BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5114
(394 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FLV|A Chain A, The Crystal Structure Of Human Acyl-Coenzymea Binding
Domain Containing 5
pdb|3FLV|B Chain B, The Crystal Structure Of Human Acyl-Coenzymea Binding
Domain Containing 5
Length = 119
Score = 137 bits (346), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 59/94 (62%), Positives = 77/94 (81%)
Query: 83 EEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDA 142
E +F AAV VI++LPKNG++QP+N++ML+FYS++KQATEGPCK +P FWD + + KWDA
Sbjct: 25 ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDA 84
Query: 143 WKKLGNMGKEEAMEAYVEELKKIVETMAYNDNVE 176
W LG+M KEEAM AYVEE+KKI+ETM + VE
Sbjct: 85 WSSLGDMTKEEAMIAYVEEMKKIIETMPMTEKVE 118
>pdb|2WH5|A Chain A, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|B Chain B, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|C Chain C, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|D Chain D, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|E Chain E, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
pdb|2WH5|F Chain F, Crystal Structure Of Human Acyl-Coa Binding Domain 4
Complexed With Stearoyl-Coa
Length = 106
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 73/99 (73%), Gaps = 4/99 (4%)
Query: 82 TEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWD 141
+++F AAV+VI+NLPKNG+Y+PS + MLRFYSY+KQAT GPC P+P FWD + + KWD
Sbjct: 8 CQKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWD 67
Query: 142 AWKKLGNMGKEEAMEAYVEELK----KIVETMAYNDNVE 176
AW LG M +EEAM AY+ E+K K+++T+ + E
Sbjct: 68 AWNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLGEVAE 106
>pdb|3FP5|A Chain A, Crystal Structure Of Acbp From Moniliophthora Perniciosa
Length = 106
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 51/82 (62%)
Query: 85 KFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDAWK 144
KF AV ++++LPK+G +P+ D L FY YFKQAT G +P D KAKWDAWK
Sbjct: 7 KFDKAVEIVQSLPKDGPIKPTQDEQLYFYKYFKQATVGDVNISRPGLMDFTGKAKWDAWK 66
Query: 145 KLGNMGKEEAMEAYVEELKKIV 166
+ KE A + YVE+L +I+
Sbjct: 67 SVEGTSKEVAYQKYVEKLLEIL 88
>pdb|2CQU|A Chain A, Solution Structure Of Rsgi Ruh-045, A Human Acyl-Coa
Binding Protein
Length = 116
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 55/83 (66%), Gaps = 4/83 (4%)
Query: 78 AKMTTEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRK 137
A +++ F ++N ++ L K+ P N++ L+ Y+ +KQATEGPC PKP +D++ K
Sbjct: 12 AMRASQKDFENSMNQVKLLKKD----PGNEVKLKLYALYKQATEGPCNMPKPGVFDLINK 67
Query: 138 AKWDAWKKLGNMGKEEAMEAYVE 160
AKWDAW LG++ KE A + YV+
Sbjct: 68 AKWDAWNALGSLPKEAARQNYVD 90
>pdb|2LBB|A Chain A, Solution Structure Of Acyl Coa Binding Protein From
Babesia Bovis T2bo
Length = 96
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 82 TEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWD 141
+ + F AAV + N A SND L FY Y+KQAT G C +PKP + K KW+
Sbjct: 10 SADDFDAAVKYVSNTTTMMA---SNDDKLCFYKYYKQATVGDCNKPKPGMLQLQEKYKWE 66
Query: 142 AWKKLGNMGKEEAMEAYVEELKKIVETMA 170
AW L M E A EAYV K+++T+A
Sbjct: 67 AWNALRGMSTESAKEAYV----KLLDTLA 91
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 25 TEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQVKIQNTRLFIEDQTTPAKMTTEE 84
+ + F AAV + N A SND L FY Y+KQ + + ++ P + +E
Sbjct: 10 SADDFDAAVKYVSNTTTMMA---SNDDKLCFYKYYKQATVGDC-----NKPKPGMLQLQE 61
Query: 85 KFH-AAVNVIRNLPKNGA 101
K+ A N +R + A
Sbjct: 62 KYKWEAWNALRGMSTESA 79
>pdb|2FDQ|A Chain A, Crystal Structure Of Acbp From Armadillo Harderian Gland
pdb|2FDQ|B Chain B, Crystal Structure Of Acbp From Armadillo Harderian Gland
pdb|2FDQ|C Chain C, Crystal Structure Of Acbp From Armadillo Harderian Gland
Length = 86
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 7/86 (8%)
Query: 82 TEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWD 141
++ +F A ++NL +P++D ML YS++KQAT G +P D KAKWD
Sbjct: 1 SQAEFDKAAEEVKNLKT----KPADDEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWD 56
Query: 142 AWKKLGNMGKEEAMEAY---VEELKK 164
AW +L KE+AM++Y VEELKK
Sbjct: 57 AWNQLKGTSKEDAMKSYIDKVEELKK 82
>pdb|2CB8|A Chain A, High Resolution Crystal Structure Of Liganded Human L-Acbp
pdb|2CB8|B Chain B, High Resolution Crystal Structure Of Liganded Human L-Acbp
Length = 87
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 7/86 (8%)
Query: 82 TEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWD 141
++ +F A +R+L +PS++ ML Y ++KQAT G +P D KAKWD
Sbjct: 2 SQAEFEKAAEEVRHLKT----KPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWD 57
Query: 142 AWKKLGNMGKEEAMEAY---VEELKK 164
AW +L KE+AM+AY VEELKK
Sbjct: 58 AWNELKGTSKEDAMKAYINKVEELKK 83
>pdb|2FJ9|A Chain A, High Resolution Crystal Structure Of The Unliganded Human
Acbp
Length = 86
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 7/86 (8%)
Query: 82 TEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWD 141
++ +F A +R+L +PS++ ML Y ++KQAT G +P D KAKWD
Sbjct: 1 SQAEFEKAAEEVRHLKT----KPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWD 56
Query: 142 AWKKLGNMGKEEAMEAY---VEELKK 164
AW +L KE+AM+AY VEELKK
Sbjct: 57 AWNELKGTSKEDAMKAYINKVEELKK 82
>pdb|1HB6|A Chain A, Structure Of Bovine Acyl-Coa Binding Protein In
Orthorhombic Crystal Form
pdb|1HB8|A Chain A, Structure Of Bovine Acyl-Coa Binding Protein In Tetragonal
Crystal Form
pdb|1HB8|B Chain B, Structure Of Bovine Acyl-Coa Binding Protein In Tetragonal
Crystal Form
pdb|1HB8|C Chain C, Structure Of Bovine Acyl-Coa Binding Protein In Tetragonal
Crystal Form
pdb|1NTI|A Chain A, Rdc-Refined Nmr Structure Of Bovine Acyl-Coenzyme A
Binding Protein, Acbp
pdb|1NVL|A Chain A, Rdc-Refined Nmr Structure Of Bovine Acyl-Coenzyme A
Binding Protein, Acbp, In Complex With
Palmitoyl-Coenzyme A
pdb|1ACA|A Chain A, Three-Dimensional Structure Of The Complex Between
Acyl-Coenzyme A Binding Protein And Palmitoyl-Coenzyme A
pdb|2ABD|A Chain A, The Three-Dimensional Structure Of Acyl-Coenzyme A Binding
Protein From Bovine Liver. Structural Refinement Using
Heteronuclear Multidimensional Nmr Spectroscopy
Length = 86
Score = 62.0 bits (149), Expect = 5e-10, Method: Composition-based stats.
Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 7/86 (8%)
Query: 82 TEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWD 141
++ +F A +++L +P+++ ML YS++KQAT G +P D KAKWD
Sbjct: 1 SQAEFDKAAEEVKHLKT----KPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWD 56
Query: 142 AWKKLGNMGKEEAMEAY---VEELKK 164
AW +L KE+AM+AY VEELKK
Sbjct: 57 AWNELKGTSKEDAMKAYIDKVEELKK 82
>pdb|2COP|A Chain A, Solution Structure Of Rsgi Ruh-040, An Acbp Domain From
Human Cdna
Length = 109
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%)
Query: 105 SNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDAWKKLGNMGKEEAMEAYVEELKK 164
S + +L Y+ +KQ G C PKPSF+D K KW+AWK LG+ +AM+ Y+ +KK
Sbjct: 27 SREQLLYLYARYKQVKVGNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVKK 86
Query: 165 I 165
+
Sbjct: 87 L 87
>pdb|1HBK|A Chain A, Acyl-Coa Binding Protein From Plasmodium Falciparum
Length = 89
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 86 FHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDAWKK 145
F V+ I LP+ N+L L Y Y+KQ+T G C +PS + + K++AWK
Sbjct: 6 FEECVSFINGLPR--TINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEAWKS 63
Query: 146 LGNMGKEEAMEAYVEELKKI 165
+ N+ +E+A + YV+ + +I
Sbjct: 64 VENLNREDAQKRYVDIVSEI 83
>pdb|1ST7|A Chain A, Solution Structure Of Acyl Coenzyme A Binding Protein From
Yeast
Length = 86
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 86 FHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDAWKK 145
F + LP +PS D +L Y+ +KQAT G + KP +++ + KW+AW+
Sbjct: 5 FEEKAKAVNELPT----KPSTDELLELYALYKQATVGDNDKEKPGIFNMKDRYKWEAWEN 60
Query: 146 LGNMGKEEAMEAYV 159
L +E+A + Y+
Sbjct: 61 LKGKSQEDAEKEYI 74
>pdb|3EPY|A Chain A, Crystal Structure Of Human Acyl-Coa Binding Domain 7
Complexed With Palmitoyl-Coa
pdb|3EPY|B Chain B, Crystal Structure Of Human Acyl-Coa Binding Domain 7
Complexed With Palmitoyl-Coa
Length = 89
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 80 MTTEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAK 139
M + F A +R L +P + + Y +KQA G P D+ KAK
Sbjct: 2 MALQADFDRAAEDVRKLKA----RPDDGELKELYGLYKQAIVGDINIACPGMLDLKGKAK 57
Query: 140 WDAWKKLGNMGKEEAMEAYVEELKKIVE 167
W+AW + E+A AY+ + K+++E
Sbjct: 58 WEAWNLKKGLSTEDATSAYISKAKELIE 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,746,187
Number of Sequences: 62578
Number of extensions: 484904
Number of successful extensions: 865
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 841
Number of HSP's gapped (non-prelim): 29
length of query: 394
length of database: 14,973,337
effective HSP length: 101
effective length of query: 293
effective length of database: 8,652,959
effective search space: 2535316987
effective search space used: 2535316987
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)