Query psy5114
Match_columns 394
No_of_seqs 275 out of 1198
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 17:36:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00458 acyl CoA binding prot 100.0 4.7E-28 1E-32 200.6 10.8 87 83-171 2-88 (90)
2 cd00435 ACBP Acyl CoA binding 99.9 8.7E-28 1.9E-32 196.9 10.3 85 82-170 1-85 (85)
3 KOG0817|consensus 99.9 2.4E-27 5.2E-32 210.8 10.5 104 80-187 3-106 (142)
4 PF00887 ACBP: Acyl CoA bindin 99.9 3.3E-27 7.1E-32 193.0 9.5 86 82-169 1-86 (87)
5 COG4281 ACB Acyl-CoA-binding p 99.9 5.1E-23 1.1E-27 164.7 8.9 85 82-170 2-86 (87)
6 PTZ00458 acyl CoA binding prot 99.7 6E-18 1.3E-22 140.4 5.1 69 26-101 2-71 (90)
7 cd00435 ACBP Acyl CoA binding 99.7 3E-17 6.4E-22 134.7 5.0 68 25-101 1-69 (85)
8 KOG0817|consensus 99.7 2.7E-17 5.8E-22 146.7 5.0 82 23-113 3-85 (142)
9 PF00887 ACBP: Acyl CoA bindin 99.6 2E-16 4.4E-21 129.4 3.5 68 25-99 1-69 (87)
10 COG4281 ACB Acyl-CoA-binding p 99.6 8.5E-16 1.8E-20 123.4 4.0 67 25-100 2-69 (87)
11 KOG3878|consensus 98.8 9.7E-09 2.1E-13 102.4 7.7 91 79-170 29-122 (469)
12 smart00295 B41 Band 4.1 homolo 95.4 0.038 8.2E-07 50.1 6.3 71 100-171 113-204 (207)
13 PF00373 FERM_M: FERM central 93.5 0.19 4E-06 42.2 5.8 70 100-170 25-122 (126)
14 KOG3878|consensus 88.1 0.46 1E-05 48.6 3.4 74 24-100 31-105 (469)
15 TIGR02976 phageshock_pspB phag 83.0 2.2 4.8E-05 34.7 4.4 38 317-359 36-73 (75)
16 PF14316 DUF4381: Domain of un 82.9 1.8 3.9E-05 38.6 4.3 30 354-386 12-41 (146)
17 PF06667 PspB: Phage shock pro 80.5 3.2 7E-05 33.8 4.6 36 319-359 38-73 (75)
18 PF10393 Matrilin_ccoil: Trime 80.1 4.2 9.2E-05 30.4 4.7 31 315-345 15-45 (47)
19 KOG3530|consensus 71.8 19 0.00041 39.6 8.8 108 60-171 74-200 (616)
20 PRK09458 pspB phage shock prot 69.1 9.9 0.00021 31.1 4.6 31 324-359 43-73 (75)
21 KOG0860|consensus 51.7 49 0.0011 29.3 6.1 35 315-349 32-69 (116)
22 PF10241 KxDL: Uncharacterized 47.5 34 0.00075 28.3 4.4 28 321-348 55-82 (88)
23 TIGR01837 PHA_granule_1 poly(h 42.7 40 0.00086 29.4 4.3 35 315-349 77-115 (118)
24 PF06377 Adipokin_hormo: Adipo 39.9 45 0.00097 25.2 3.5 13 47-59 24-36 (48)
25 PF05819 NolX: NolX protein; 39.6 1.2E+02 0.0026 33.3 7.9 114 54-173 304-448 (624)
26 PF07889 DUF1664: Protein of u 38.3 51 0.0011 29.4 4.3 29 321-349 94-122 (126)
27 PF13512 TPR_18: Tetratricopep 34.9 3.5E+02 0.0076 24.6 9.2 55 27-99 24-80 (142)
28 PF10399 UCR_Fe-S_N: Ubiquitin 33.8 22 0.00047 25.8 1.0 12 370-381 27-38 (41)
29 PF11157 DUF2937: Protein of u 32.8 1.2E+02 0.0026 28.1 6.0 26 324-349 72-97 (167)
30 PF08020 DUF1706: Protein of u 32.8 3.5E+02 0.0077 25.0 9.1 87 83-169 15-119 (166)
31 PF02076 STE3: Pheromone A rec 32.8 71 0.0015 31.9 4.8 29 354-383 135-163 (283)
32 TIGR01478 STEVOR variant surfa 31.2 55 0.0012 33.2 3.7 25 369-393 265-289 (295)
33 PF05597 Phasin: Poly(hydroxya 29.8 1E+02 0.0022 27.7 4.8 35 315-349 90-128 (132)
34 PTZ00370 STEVOR; Provisional 29.1 61 0.0013 32.9 3.6 25 369-393 261-285 (296)
35 PRK14127 cell division protein 27.6 1.8E+02 0.0039 25.3 5.9 35 315-349 29-63 (109)
36 PF12325 TMF_TATA_bd: TATA ele 27.2 1.8E+02 0.0039 25.7 5.8 41 308-348 8-48 (120)
37 PF02840 Prp18: Prp18 domain; 27.0 2.2E+02 0.0048 26.0 6.5 93 50-167 38-136 (144)
38 KOG3202|consensus 26.2 1.2E+02 0.0026 29.8 5.0 34 315-349 173-206 (235)
39 PF04508 Pox_A_type_inc: Viral 25.4 73 0.0016 20.6 2.2 18 330-347 1-18 (23)
40 TIGR03141 cytochro_ccmD heme e 23.9 58 0.0013 23.7 1.8 30 358-388 9-39 (45)
41 PF09835 DUF2062: Uncharacteri 23.7 1.1E+02 0.0023 27.2 3.9 18 377-394 137-154 (154)
42 PRK10884 SH3 domain-containing 22.6 1.4E+02 0.003 28.7 4.6 40 321-361 137-176 (206)
43 PF13584 BatD: Oxygen toleranc 22.0 1.1E+02 0.0023 32.2 4.1 27 365-391 424-450 (484)
44 KOG3287|consensus 21.5 1.6E+02 0.0034 29.0 4.7 70 315-388 145-225 (236)
45 PF06031 SERTA: SERTA motif; 20.7 54 0.0012 23.6 1.1 15 319-333 24-38 (38)
46 PF12041 DELLA: Transcriptiona 20.5 92 0.002 25.5 2.5 18 330-347 14-31 (73)
47 COG4283 Uncharacterized conser 20.4 6.9E+02 0.015 23.5 8.4 88 83-170 15-123 (170)
48 TIGR02978 phageshock_pspC phag 20.1 1.4E+02 0.003 26.4 3.7 26 322-347 83-108 (121)
No 1
>PTZ00458 acyl CoA binding protein; Provisional
Probab=99.95 E-value=4.7e-28 Score=200.61 Aligned_cols=87 Identities=31% Similarity=0.624 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhhhhcccCCCCCCCCCcccHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy5114 83 EEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDAWKKLGNMGKEEAMEAYVEEL 162 (394)
Q Consensus 83 eekFeaAw~~VK~L~kega~~ps~e~~L~LYalYKQAT~Gdc~~prPg~~D~~~raKwdAW~~lggMS~eEAm~~YVe~v 162 (394)
.+.|++|++.|++++.++ .+++|++|+|||||||||+|+|+.++||+||+++|+||+||++++|||++|||++||+++
T Consensus 2 ~~~F~~A~~~v~~~~~~~--~~s~d~~L~lYalyKQAt~G~c~~~~P~~~d~~~raKw~AW~~l~~ms~~eA~~~YI~l~ 79 (90)
T PTZ00458 2 ADLFEECVSFINSLPKTV--NLSVEIKLDLYKYYKQSTVGNCNIKEPSMFKYQDRKKYEAWKSIENLNREDAKKRYVEIV 79 (90)
T ss_pred hHHHHHHHHHHHhCCCCC--CCCHHHHHHHHHHHhhhccCCCCCCCCCcccHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 367999999999988764 489999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC
Q psy5114 163 KKIVETMAY 171 (394)
Q Consensus 163 ~~ii~~~~~ 171 (394)
++++++|.-
T Consensus 80 ~~l~~~w~~ 88 (90)
T PTZ00458 80 TELFPNWEK 88 (90)
T ss_pred HHHhhcccc
Confidence 999998854
No 2
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=99.95 E-value=8.7e-28 Score=196.89 Aligned_cols=85 Identities=40% Similarity=0.809 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhhhhcccCCCCCCCCCcccHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy5114 82 TEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDAWKKLGNMGKEEAMEAYVEE 161 (394)
Q Consensus 82 leekFeaAw~~VK~L~kega~~ps~e~~L~LYalYKQAT~Gdc~~prPg~~D~~~raKwdAW~~lggMS~eEAm~~YVe~ 161 (394)
++++|+.|++.|+.++. .+++|++|+|||||||||+|||+.++||+||+++++||+||++++|||++|||+.||++
T Consensus 1 ~~~~F~~A~~~v~~~~~----~~~~~~~L~lYalyKQAt~G~~~~~~P~~~d~~~~~K~~AW~~l~~ms~~eA~~~YV~~ 76 (85)
T cd00435 1 LQEEFEAAAEKVKKLKT----KPSNEEKLQLYSLYKQATVGDCNTERPGMFDLKGRAKWDAWNSLKGMSKEDAMKAYIAK 76 (85)
T ss_pred ChHHHHHHHHHHHhCCC----CcCHHHHHHHHHHHHHhccCCCCCCCCCcccHhhHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 35789999999999985 59999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC
Q psy5114 162 LKKIVETMA 170 (394)
Q Consensus 162 v~~ii~~~~ 170 (394)
+++++++|+
T Consensus 77 ~~~l~~~~~ 85 (85)
T cd00435 77 VEELIAKYA 85 (85)
T ss_pred HHHHhhccC
Confidence 999999874
No 3
>KOG0817|consensus
Probab=99.94 E-value=2.4e-27 Score=210.83 Aligned_cols=104 Identities=44% Similarity=0.730 Sum_probs=97.4
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhhhhcccCCCCCCCCCcccHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy5114 80 MTTEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDAWKKLGNMGKEEAMEAYV 159 (394)
Q Consensus 80 mdleekFeaAw~~VK~L~kega~~ps~e~~L~LYalYKQAT~Gdc~~prPg~~D~~~raKwdAW~~lggMS~eEAm~~YV 159 (394)
+.+...|+.|.+.+++|++. |++|++|+|||||||||+|||+.++||+||+++|+||+||+++||||++|||+.||
T Consensus 3 ~~~~~~Fe~a~~~~~~l~~~----p~~ee~L~lYglyKQAt~G~~~~~kPg~~d~~~k~Kw~AW~~l~~~s~~eA~~~Yv 78 (142)
T KOG0817|consen 3 ATLEAKFEAAAEAVKNLKKK----PSNEELLKLYGLYKQATVGDCNTPKPGFFDEEGKAKWQAWNSLGGMSKEEAMEAYV 78 (142)
T ss_pred chHHHHHHHHHHHHHhcccC----CCHHHHHHHHHHHHhhccCCCCCCCCchhhHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 45678999999999999985 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcchHHhhhccccccc
Q psy5114 160 EELKKIVETMAYNDNVETFMGSLDSFYE 187 (394)
Q Consensus 160 e~v~~ii~~~~~t~~~~~~l~~~~~~y~ 187 (394)
+.+.+++++|....+..++.+..+.+++
T Consensus 79 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 106 (142)
T KOG0817|consen 79 EKVEELIPKYGAEAETEEKTELTISEDD 106 (142)
T ss_pred HHHHHHHHHhhcccccccCccccccccc
Confidence 9999999999999999888877766543
No 4
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=99.94 E-value=3.3e-27 Score=193.02 Aligned_cols=86 Identities=49% Similarity=0.877 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhhhhcccCCCCCCCCCcccHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy5114 82 TEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDAWKKLGNMGKEEAMEAYVEE 161 (394)
Q Consensus 82 leekFeaAw~~VK~L~kega~~ps~e~~L~LYalYKQAT~Gdc~~prPg~~D~~~raKwdAW~~lggMS~eEAm~~YVe~ 161 (394)
++++|+.|+++++.++.. ..+++|++|+|||||||||+|||+.++|+++|+++++||+||++++|||++|||++||++
T Consensus 1 Le~~F~~A~~~v~~~~~~--~~~~~~~~L~LYalyKQAt~Gd~~~~~P~~~d~~~~~K~~AW~~l~gms~~eA~~~Yi~~ 78 (87)
T PF00887_consen 1 LEEEFEAAVEFVSNLPKK--SQLSNDDKLELYALYKQATHGDCDTPRPGFFDIEGRAKWDAWKALKGMSKEEAMREYIEL 78 (87)
T ss_dssp HHHHHHHHHHHHHHSSSC--STS-HHHHHHHHHHHHHHHTSS--S-CTTTTCHHHHHHHHHHHTTTTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccc--CCCCHHHHHHHHHHHHHHHhCCCcCCCCcchhHHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 578999999999999975 579999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q psy5114 162 LKKIVETM 169 (394)
Q Consensus 162 v~~ii~~~ 169 (394)
+++++++|
T Consensus 79 v~~~~~~~ 86 (87)
T PF00887_consen 79 VEELIPKY 86 (87)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999987
No 5
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=99.89 E-value=5.1e-23 Score=164.72 Aligned_cols=85 Identities=29% Similarity=0.616 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhhhhcccCCCCCCCCCcccHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy5114 82 TEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDAWKKLGNMGKEEAMEAYVEE 161 (394)
Q Consensus 82 leekFeaAw~~VK~L~kega~~ps~e~~L~LYalYKQAT~Gdc~~prPg~~D~~~raKwdAW~~lggMS~eEAm~~YVe~ 161 (394)
+...|+.|...|+.|+. .|+++++|+||+||||+++||.+..+||+||++||+||+||..|+|.|+|+|.++||.+
T Consensus 2 ~s~~Feqa~~dV~~L~~----kP~~d~LLkLYAL~KQ~s~GD~~~ekPG~~d~~gr~K~eAW~~LKGksqedA~qeYial 77 (87)
T COG4281 2 LSTRFEQAQTDVKELSE----KPSNDELLKLYALFKQGSVGDNDGEKPGFFDIVGRYKYEAWAGLKGKSQEDARQEYIAL 77 (87)
T ss_pred hhhHHHHHHHHHHHhcc----CCCcHHHHHHHHHHHhccccccCCCCCCccccccchhHHHHhhccCccHHHHHHHHHHH
Confidence 45689999999999997 59999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC
Q psy5114 162 LKKIVETMA 170 (394)
Q Consensus 162 v~~ii~~~~ 170 (394)
|++++.+++
T Consensus 78 VeeLkak~~ 86 (87)
T COG4281 78 VEELKAKYG 86 (87)
T ss_pred HHHHHhhcC
Confidence 999988764
No 6
>PTZ00458 acyl CoA binding protein; Provisional
Probab=99.71 E-value=6e-18 Score=140.40 Aligned_cols=69 Identities=28% Similarity=0.462 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCChHHHHHHHhhhhhhhcccccccccccCCCCCCChHHHHH-HHHHHHhcCCCCCC
Q psy5114 26 EEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQVKIQNTRLFIEDQTTPAKMTTEEKFH-AAVNVIRNLPKNGA 101 (394)
Q Consensus 26 ee~F~~Av~~vk~L~k~g~~~psn~~~L~~YalYKQAT~Gdcn~~~~~~~~PgmmdleekFe-aAw~~VK~L~kega 101 (394)
.+.|++|+++|++++++++ ++++++|+|||||||||+|||+ ..+||++++.++++ +||+.+++++++++
T Consensus 2 ~~~F~~A~~~v~~~~~~~~--~s~d~~L~lYalyKQAt~G~c~-----~~~P~~~d~~~raKw~AW~~l~~ms~~eA 71 (90)
T PTZ00458 2 ADLFEECVSFINSLPKTVN--LSVEIKLDLYKYYKQSTVGNCN-----IKEPSMFKYQDRKKYEAWKSIENLNREDA 71 (90)
T ss_pred hHHHHHHHHHHHhCCCCCC--CCHHHHHHHHHHHhhhccCCCC-----CCCCCcccHHHHHHHHHHHHcCCCCHHHH
Confidence 4679999999999988643 8999999999999999999999 88999999999995 99999999997644
No 7
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=99.68 E-value=3e-17 Score=134.74 Aligned_cols=68 Identities=26% Similarity=0.484 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHhhhhhhhcccccccccccCCCCCCChHHHHH-HHHHHHhcCCCCCC
Q psy5114 25 TEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQVKIQNTRLFIEDQTTPAKMTTEEKFH-AAVNVIRNLPKNGA 101 (394)
Q Consensus 25 lee~F~~Av~~vk~L~k~g~~~psn~~~L~~YalYKQAT~Gdcn~~~~~~~~PgmmdleekFe-aAw~~VK~L~kega 101 (394)
+++.|++|+++|++++.. |+++++|+|||||||||+|||+ ..+||++++.++++ +||+.+++++++++
T Consensus 1 ~~~~F~~A~~~v~~~~~~----~~~~~~L~lYalyKQAt~G~~~-----~~~P~~~d~~~~~K~~AW~~l~~ms~~eA 69 (85)
T cd00435 1 LQEEFEAAAEKVKKLKTK----PSNEEKLQLYSLYKQATVGDCN-----TERPGMFDLKGRAKWDAWNSLKGMSKEDA 69 (85)
T ss_pred ChHHHHHHHHHHHhCCCC----cCHHHHHHHHHHHHHhccCCCC-----CCCCCcccHhhHHHHHHHHHcCCCCHHHH
Confidence 468999999999999866 9999999999999999999998 88999999999985 99999999987543
No 8
>KOG0817|consensus
Probab=99.68 E-value=2.7e-17 Score=146.70 Aligned_cols=82 Identities=28% Similarity=0.439 Sum_probs=71.1
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHhhhhhhhcccccccccccCCCCCCChHHHH-HHHHHHHhcCCCCCC
Q psy5114 23 MTTEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQVKIQNTRLFIEDQTTPAKMTTEEKF-HAAVNVIRNLPKNGA 101 (394)
Q Consensus 23 m~lee~F~~Av~~vk~L~k~g~~~psn~~~L~~YalYKQAT~Gdcn~~~~~~~~PgmmdleekF-eaAw~~VK~L~kega 101 (394)
+++.++|++|++.|++|+++ |+++++|+|||||||||+|||+ +.+||++++++++ ++||+.+++++++++
T Consensus 3 ~~~~~~Fe~a~~~~~~l~~~----p~~ee~L~lYglyKQAt~G~~~-----~~kPg~~d~~~k~Kw~AW~~l~~~s~~eA 73 (142)
T KOG0817|consen 3 ATLEAKFEAAAEAVKNLKKK----PSNEELLKLYGLYKQATVGDCN-----TPKPGFFDEEGKAKWQAWNSLGGMSKEEA 73 (142)
T ss_pred chHHHHHHHHHHHHHhcccC----CCHHHHHHHHHHHHhhccCCCC-----CCCCchhhHHHHHHHHHHHhcCCCCHHHH
Confidence 56789999999999999999 9999999999999999999999 9999999999998 499999999998765
Q ss_pred CCCCHHHHHHHH
Q psy5114 102 YQPSNDLMLRFY 113 (394)
Q Consensus 102 ~~ps~e~~L~LY 113 (394)
++-..+....|+
T Consensus 74 ~~~Yv~~~~~l~ 85 (142)
T KOG0817|consen 74 MEAYVEKVEELI 85 (142)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 9
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=99.62 E-value=2e-16 Score=129.40 Aligned_cols=68 Identities=32% Similarity=0.479 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHhhhhhhhcccccccccccCCCCCCChHHHHH-HHHHHHhcCCCC
Q psy5114 25 TEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQVKIQNTRLFIEDQTTPAKMTTEEKFH-AAVNVIRNLPKN 99 (394)
Q Consensus 25 lee~F~~Av~~vk~L~k~g~~~psn~~~L~~YalYKQAT~Gdcn~~~~~~~~PgmmdleekFe-aAw~~VK~L~ke 99 (394)
|+++|+.|+++|++++.. +.++++++|+|||||||||+|||+ .++||++++.++++ +||+.+++++++
T Consensus 1 Le~~F~~A~~~v~~~~~~--~~~~~~~~L~LYalyKQAt~Gd~~-----~~~P~~~d~~~~~K~~AW~~l~gms~~ 69 (87)
T PF00887_consen 1 LEEEFEAAVEFVSNLPKK--SQLSNDDKLELYALYKQATHGDCD-----TPRPGFFDIEGRAKWDAWKALKGMSKE 69 (87)
T ss_dssp HHHHHHHHHHHHHHSSSC--STS-HHHHHHHHHHHHHHHTSS-------S-CTTTTCHHHHHHHHHHHTTTTTHHH
T ss_pred CHHHHHHHHHHHHhcccc--CCCCHHHHHHHHHHHHHHHhCCCc-----CCCCcchhHHHHHHHHHHHHccCCCHH
Confidence 689999999999999985 459999999999999999999998 89999999999984 999999998864
No 10
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=99.59 E-value=8.5e-16 Score=123.40 Aligned_cols=67 Identities=21% Similarity=0.418 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHhhhhhhhcccccccccccCCCCCCChHHHHH-HHHHHHhcCCCCC
Q psy5114 25 TEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQVKIQNTRLFIEDQTTPAKMTTEEKFH-AAVNVIRNLPKNG 100 (394)
Q Consensus 25 lee~F~~Av~~vk~L~k~g~~~psn~~~L~~YalYKQAT~Gdcn~~~~~~~~PgmmdleekFe-aAw~~VK~L~keg 100 (394)
+...|++|...|+.|+++ |+|+++|+||+||||+|+||++ +.+||.+|+.++|+ +||.-+|+.+++.
T Consensus 2 ~s~~Feqa~~dV~~L~~k----P~~d~LLkLYAL~KQ~s~GD~~-----~ekPG~~d~~gr~K~eAW~~LKGksqed 69 (87)
T COG4281 2 LSTRFEQAQTDVKELSEK----PSNDELLKLYALFKQGSVGDND-----GEKPGFFDIVGRYKYEAWAGLKGKSQED 69 (87)
T ss_pred hhhHHHHHHHHHHHhccC----CCcHHHHHHHHHHHhccccccC-----CCCCCccccccchhHHHHhhccCccHHH
Confidence 456899999999999998 9999999999999999999998 99999999999995 9999999998763
No 11
>KOG3878|consensus
Probab=98.81 E-value=9.7e-09 Score=102.44 Aligned_cols=91 Identities=24% Similarity=0.424 Sum_probs=81.4
Q ss_pred CCChHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhhhhcccCCCCC---CCCCcccHHHHHHHHHHHhcCCCCHHHHH
Q psy5114 79 KMTTEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQ---PKPSFWDVVRKAKWDAWKKLGNMGKEEAM 155 (394)
Q Consensus 79 mmdleekFeaAw~~VK~L~kega~~ps~e~~L~LYalYKQAT~Gdc~~---prPg~~D~~~raKwdAW~~lggMS~eEAm 155 (394)
.+.+++-+.-|..+.|... ..++.+++|++|+|.+|.||+.+|++|+ |.-|++|++|+.+-.+|..||.||+++||
T Consensus 29 Gf~LeElY~LA~~fyKe~~-GKa~h~~YEd~lKLial~kQv~~Gp~n~d~~p~~G~lDv~GnDr~~~W~~LG~~sre~AM 107 (469)
T KOG3878|consen 29 GFPLEELYRLAFTFYKENS-GKAIHLSYEDNLKLIALKKQVALGPFNTDRAPALGVLDVIGNDRQQHWQLLGEISREQAM 107 (469)
T ss_pred CCCHHHHHHHHHHHHHhcc-CCccCCChhhhhhhhhhHhhhhcCCCCcccCcccceeecccChHHHHHHHHhcccHHHHH
Confidence 5789999999999999543 3578999999999999999999999995 34479999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q psy5114 156 EAYVEELKKIVETMA 170 (394)
Q Consensus 156 ~~YVe~v~~ii~~~~ 170 (394)
..||.+++.++..+.
T Consensus 108 ~~FV~Lldr~C~~F~ 122 (469)
T KOG3878|consen 108 EGFVDLLDRMCSAFR 122 (469)
T ss_pred HHHHHHHHhcchhhh
Confidence 999999999888764
No 12
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=95.42 E-value=0.038 Score=50.06 Aligned_cols=71 Identities=23% Similarity=0.178 Sum_probs=53.3
Q ss_pred CCCCCCHHHHHHHHHhhhhcccCCCCCCCC---C-----------cccH-------HHHHHHHHHHhcCCCCHHHHHHHH
Q psy5114 100 GAYQPSNDLMLRFYSYFKQATEGPCKQPKP---S-----------FWDV-------VRKAKWDAWKKLGNMGKEEAMEAY 158 (394)
Q Consensus 100 ga~~ps~e~~L~LYalYKQAT~Gdc~~prP---g-----------~~D~-------~~raKwdAW~~lggMS~eEAm~~Y 158 (394)
|-++.+.|+...|-||.-|+..|+++.+.. . ..+. ..+.--++|+++.|||+.+||.+|
T Consensus 113 g~~~~~~~~~~~Laal~~q~~~gd~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~a~~~y 192 (207)
T smart00295 113 GRLPCPEEEALLLAALALQAEFGDYDEELHVLLKELSLKRFLPKQLLDSEKRTLKEWRERIVSLHKELIGLSPEEAKLKY 192 (207)
T ss_pred CccCCCHHHHHHHHHHHHHHHhcCCChHhcCCccccccceeCChhhhhhccccHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 445678999999999999999999985431 1 1111 112234899999999999999999
Q ss_pred HHHHHHHHHhcCC
Q psy5114 159 VEELKKIVETMAY 171 (394)
Q Consensus 159 Ve~v~~ii~~~~~ 171 (394)
|+.++++ +.++.
T Consensus 193 l~~~~~l-p~fG~ 204 (207)
T smart00295 193 LELAEKL-PTYGV 204 (207)
T ss_pred HHHhccc-cccCc
Confidence 9999876 66654
No 13
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=93.49 E-value=0.19 Score=42.18 Aligned_cols=70 Identities=21% Similarity=0.352 Sum_probs=47.8
Q ss_pred CCCCCCHHHHHHHHHhhhhcccCCCCCC---CCCccc--------------------HHHHHHH-----HHHHhcCCCCH
Q psy5114 100 GAYQPSNDLMLRFYSYFKQATEGPCKQP---KPSFWD--------------------VVRKAKW-----DAWKKLGNMGK 151 (394)
Q Consensus 100 ga~~ps~e~~L~LYalYKQAT~Gdc~~p---rPg~~D--------------------~~~raKw-----dAW~~lggMS~ 151 (394)
|.+..+.++-++|-||.-|+..|+++.. ..+..+ ..+...| ..|+++.|||.
T Consensus 25 g~~~~~~e~a~~LAAl~~q~~~gd~~~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~~~~~I~~~~~~l~~~s~ 104 (126)
T PF00373_consen 25 GRLPCSEEDAIKLAALQLQAEYGDYNSEQEHSSGYIDPEIKEFQLENFIPKAPKLIKKMKQKEWEKRILEQHKKLRGMSP 104 (126)
T ss_dssp TSSTS-HHHHHHHHHHHHHHHHTSSTTTTTSSTTTTTGSHHCTCGHGTSSHHHHHHCCSTHHHHHHHHHHHHHHTTT--H
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCCcccccCcccccccccchhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhCCCH
Confidence 4456899999999999999999999822 111111 0122223 88999999999
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q psy5114 152 EEAMEAYVEELKKIVETMA 170 (394)
Q Consensus 152 eEAm~~YVe~v~~ii~~~~ 170 (394)
.+||..||+.+.++ +.|+
T Consensus 105 ~~a~~~fl~~~~~~-p~yG 122 (126)
T PF00373_consen 105 EEAKLQFLQICQSL-PTYG 122 (126)
T ss_dssp HHHHHHHHHHHCTS-TTTT
T ss_pred HHHHHHHHHHHhcC-CCCC
Confidence 99999999998753 4443
No 14
>KOG3878|consensus
Probab=88.06 E-value=0.46 Score=48.61 Aligned_cols=74 Identities=12% Similarity=0.119 Sum_probs=56.1
Q ss_pred ChHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHhhhhhhhcccccccccccCCCCCCChHHH-HHHHHHHHhcCCCCC
Q psy5114 24 TTEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQVKIQNTRLFIEDQTTPAKMTTEEK-FHAAVNVIRNLPKNG 100 (394)
Q Consensus 24 ~lee~F~~Av~~vk~L~k~g~~~psn~~~L~~YalYKQAT~Gdcn~~~~~~~~Pgmmdleek-FeaAw~~VK~L~keg 100 (394)
.|++-+.-|+.+.|.- ....+-+++++.|+|-+|-||+-.|+.|. ..-...|.+|..+. -..+|..+..++++.
T Consensus 31 ~LeElY~LA~~fyKe~-~GKa~h~~YEd~lKLial~kQv~~Gp~n~--d~~p~~G~lDv~GnDr~~~W~~LG~~sre~ 105 (469)
T KOG3878|consen 31 PLEELYRLAFTFYKEN-SGKAIHLSYEDNLKLIALKKQVALGPFNT--DRAPALGVLDVIGNDRQQHWQLLGEISREQ 105 (469)
T ss_pred CHHHHHHHHHHHHHhc-cCCccCCChhhhhhhhhhHhhhhcCCCCc--ccCcccceeecccChHHHHHHHHhcccHHH
Confidence 5778889999998832 22256699999999999999999999882 22345677887664 357888888888753
No 15
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=82.99 E-value=2.2 Score=34.74 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhhhccCCCcc
Q psy5114 317 LLDSLSDNIRNIQTDLASISERIKRLEVLSKLLAVQRSENSAW 359 (394)
Q Consensus 317 l~~qi~~tv~~Lq~dm~~V~~Rl~~LE~~~~~~~~~~~~p~wW 359 (394)
++++-...++.|-+..+.+.+||++||+.+++ .-|.|-
T Consensus 36 ls~~d~~~L~~L~~~a~rm~eRI~tLE~ILd~-----e~P~wR 73 (75)
T TIGR02976 36 LSTDDQALLQELYAKADRLEERIDTLERILDA-----EHPNWR 73 (75)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCcCcc
Confidence 44555666788888889999999999999997 456653
No 16
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=82.90 E-value=1.8 Score=38.62 Aligned_cols=30 Identities=23% Similarity=0.252 Sum_probs=20.3
Q ss_pred cCCCccCCCCCChhHHHHHHHHHHHHHHHHHHH
Q psy5114 354 SENSAWSLIRNNVPLVTFLVLWPILTQLMSLWI 386 (394)
Q Consensus 354 ~~p~wWpf~~~Sp~~l~~lilWPfvvq~l~~~~ 386 (394)
.-++|||. .|++.+++++-=+++-+++.++
T Consensus 12 ~~vswwP~---a~GWwll~~lll~~~~~~~~~~ 41 (146)
T PF14316_consen 12 PPVSWWPL---APGWWLLLALLLLLLILLLWRL 41 (146)
T ss_pred CCCCCCCc---cHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999 9999777766555555555333
No 17
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=80.48 E-value=3.2 Score=33.83 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhhhccCCCcc
Q psy5114 319 DSLSDNIRNIQTDLASISERIKRLEVLSKLLAVQRSENSAW 359 (394)
Q Consensus 319 ~qi~~tv~~Lq~dm~~V~~Rl~~LE~~~~~~~~~~~~p~wW 359 (394)
++=..-|+.|-+.++...+||+.||+.+++ .-|.|-
T Consensus 38 ~~d~~~L~~L~~~a~rm~eRI~tLE~ILda-----e~P~wR 73 (75)
T PF06667_consen 38 EEDEQRLQELYEQAERMEERIETLERILDA-----EHPNWR 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCCCcc
Confidence 333556777778888889999999999987 566664
No 18
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=80.10 E-value=4.2 Score=30.39 Aligned_cols=31 Identities=16% Similarity=0.403 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5114 315 TVLLDSLSDNIRNIQTDLASISERIKRLEVL 345 (394)
Q Consensus 315 ~~l~~qi~~tv~~Lq~dm~~V~~Rl~~LE~~ 345 (394)
..|+......|++|..-+.+|.+||+.||.-
T Consensus 15 v~FQ~~v~~~lq~Lt~kL~~vs~RLe~LEn~ 45 (47)
T PF10393_consen 15 VAFQNKVTSALQSLTQKLDAVSKRLEALENR 45 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999999953
No 19
>KOG3530|consensus
Probab=71.85 E-value=19 Score=39.60 Aligned_cols=108 Identities=16% Similarity=0.206 Sum_probs=73.0
Q ss_pred hhhhcccccc----cccccCCCCCCChHH---HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhhhhcccCCCCCC--CCC
Q psy5114 60 KQVKIQNTRL----FIEDQTTPAKMTTEE---KFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQP--KPS 130 (394)
Q Consensus 60 KQAT~Gdcn~----~~~~~~~Pgmmdlee---kFeaAw~~VK~L~kega~~ps~e~~L~LYalYKQAT~Gdc~~p--rPg 130 (394)
||..+|+-=+ ++.+.+-|. .+.+ ++.--...-+.+- .|-...+.+.-.+|=||-=|+-.||||.. -++
T Consensus 74 kqvK~gppytL~~rVKfY~sdP~--~Lree~tRYqfflQlKqDll-~GRL~Cp~~~AaeLaAl~lQsELGDYn~~~Ht~~ 150 (616)
T KOG3530|consen 74 KQVKIGPPYTLHLRVKFYPSDPN--NLREENTRYQFFLQLKQDLL-SGRLYCPFETAAELAALILQSELGDYNEEEHTGG 150 (616)
T ss_pred HHhccCCCeEEEEEEEeccCChh--hhhchhhHHHHHHHHHHHHh-cCCCCCchhhHHHHHHHHHHHHhcCCChhhcccc
Confidence 7888887322 344555565 3444 3333333334444 35556788999999999999999999964 333
Q ss_pred c---cc-------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy5114 131 F---WD-------VVRKAKWDAWKKLGNMGKEEAMEAYVEELKKIVETMAY 171 (394)
Q Consensus 131 ~---~D-------~~~raKwdAW~~lggMS~eEAm~~YVe~v~~ii~~~~~ 171 (394)
. |. -.+.+=.+-|+.++|+++++|+-+|.+.++ .++.|+.
T Consensus 151 yVSefRf~p~Qte~LE~~I~e~hK~~rGqspaqAElnyLnkAk-wLemYGV 200 (616)
T KOG3530|consen 151 YVSEFRFLPNQTEELEERIFELHKELRGQSPAQAELNYLNKAK-WLEMYGV 200 (616)
T ss_pred ceeeeEecccccHHHHHHHHHHHHHhcCCCHHHHHHHHHhhhh-hhhhccc
Confidence 2 22 223344689999999999999999998875 5566665
No 20
>PRK09458 pspB phage shock protein B; Provisional
Probab=69.07 E-value=9.9 Score=31.13 Aligned_cols=31 Identities=16% Similarity=0.256 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHhhhccCCCcc
Q psy5114 324 NIRNIQTDLASISERIKRLEVLSKLLAVQRSENSAW 359 (394)
Q Consensus 324 tv~~Lq~dm~~V~~Rl~~LE~~~~~~~~~~~~p~wW 359 (394)
-++.|-++-+..++|++.||+.+++ .-|.|-
T Consensus 43 ~L~~L~~~A~rm~~RI~tLE~ILDa-----e~P~WR 73 (75)
T PRK09458 43 RLAQLTEKAERMRERIQALEAILDA-----EHPNWR 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc-----cCCCcC
Confidence 3455556667778899999999997 566664
No 21
>KOG0860|consensus
Probab=51.66 E-value=49 Score=29.28 Aligned_cols=35 Identities=11% Similarity=0.198 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHhH
Q psy5114 315 TVLLDSLSDNIRNIQTDLASISERIKRLE---VLSKLL 349 (394)
Q Consensus 315 ~~l~~qi~~tv~~Lq~dm~~V~~Rl~~LE---~~~~~~ 349 (394)
+.+++||-.++.=|++.++.|++|=+.|. .....|
T Consensus 32 ~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L 69 (116)
T KOG0860|consen 32 QQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQL 69 (116)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHH
Confidence 67789999999999999999998755544 444444
No 22
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=47.47 E-value=34 Score=28.26 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q psy5114 321 LSDNIRNIQTDLASISERIKRLEVLSKL 348 (394)
Q Consensus 321 i~~tv~~Lq~dm~~V~~Rl~~LE~~~~~ 348 (394)
=..++..|+.||+.|..||++|...+..
T Consensus 55 ~~~~l~~mK~DLd~i~krir~lk~kl~~ 82 (88)
T PF10241_consen 55 HTKLLKEMKKDLDYIFKRIRSLKAKLAK 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999988764
No 23
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=42.72 E-value=40 Score=29.38 Aligned_cols=35 Identities=14% Similarity=0.366 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhHhH
Q psy5114 315 TVLLDSLSDNIRNIQ----TDLASISERIKRLEVLSKLL 349 (394)
Q Consensus 315 ~~l~~qi~~tv~~Lq----~dm~~V~~Rl~~LE~~~~~~ 349 (394)
.-+.+++..++.+|. +|++.+..||..||..+..+
T Consensus 77 ~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l 115 (118)
T TIGR01837 77 KAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEEL 115 (118)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999996 99999999999999887765
No 24
>PF06377 Adipokin_hormo: Adipokinetic hormone; InterPro: IPR010475 This family consists of several insect adipokinetic hormone as well as the related crustacean red pigment concentrating hormone (RPCH) []. Flight activity of insects comprises one of the most intense biochemical processes known in nature, and therefore provides an attractive model system to study the hormonal regulation of metabolism during physical exercise. In long-distance flying insects, such as the migratory locust, both carbohydrate and lipid reserves are utilised as fuels for sustained flight activity. The mobilisation of these energy stores in Locusta migratoria (Migratory locust) is mediated by three structurally related adipokinetic hormones (AKHs), which are all capable of stimulating the release of both carbohydrates and lipids from the fat body [].; GO: 0005179 hormone activity
Probab=39.94 E-value=45 Score=25.19 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=9.8
Q ss_pred CChHHHHHHHhhh
Q psy5114 47 PSNDLMLRFYSYF 59 (394)
Q Consensus 47 psn~~~L~~YalY 59 (394)
+++|.++.+|.+-
T Consensus 24 ~s~e~l~~iy~~i 36 (48)
T PF06377_consen 24 SSVESLLHIYKLI 36 (48)
T ss_pred CcHHHHHHHHHHH
Confidence 5778888888653
No 25
>PF05819 NolX: NolX protein; InterPro: IPR008718 This family consists of Rhizobium NolX and Xanthomonas HrpF proteins. The interaction between the plant pathogen Xanthomonas campestris pv. vesicatoria (strain 85-10) and its host plants is controlled by hrp genes (hypersensitive reaction and pathogenicity), which encode a type III protein secretion system. Among type III-secreted proteins are avirulence proteins, effectors involved in the induction of plant defence reactions. HrpF is dispensable for protein secretion but required for AvrBs3 recognition in planta, is thought to function as a translocator of effector proteins into the host cell []. NolX, a Glycine max (Soybean) cultivar specificity protein, is secreted by a type III secretion system (TTSS) and shows homology to HrpF. It is not known whether NolX functions at the bacterium-plant interface or acts inside the host cell. NolX is expressed in planta only during the early stages of nodule development [].; GO: 0009877 nodulation
Probab=39.56 E-value=1.2e+02 Score=33.25 Aligned_cols=114 Identities=24% Similarity=0.393 Sum_probs=63.7
Q ss_pred HHHhhhhhhhcccccccccccC--CC-CCCChHHHHH--HHHHHHhcC-CCCC------CCCCCHHHHHHHHHh------
Q psy5114 54 RFYSYFKQVKIQNTRLFIEDQT--TP-AKMTTEEKFH--AAVNVIRNL-PKNG------AYQPSNDLMLRFYSY------ 115 (394)
Q Consensus 54 ~~YalYKQAT~Gdcn~~~~~~~--~P-gmmdleekFe--aAw~~VK~L-~keg------a~~ps~e~~L~LYal------ 115 (394)
.||++=+|.+ |.|..+.-+.. .- .--...++|. .|-.+.++. +.++ ..-..+|.+-+||-|
T Consensus 304 lf~Aigsqgd-GkcgGKI~AkDls~fs~~H~qva~y~~~qA~~Y~qnYipSD~~~~~~psvMT~nDA~RELYrYSdyLPK 382 (624)
T PF05819_consen 304 LFYAIGSQGD-GKCGGKIKAKDLSKFSSHHPQVAEYAEQQAESYTQNYIPSDSKDNAQPSVMTENDAMRELYRYSDYLPK 382 (624)
T ss_pred HHHHhccCCC-CCcCCeechhhHHHHHhcChHHHHHHHHHhhhhhhccCCCCCCCCCCCcccchhHHHHHHHHhhhcccc
Confidence 4788888888 89975421111 00 0012335563 455555442 3322 112357778888876
Q ss_pred ------hhhcccCCCCCC-CCCcccHHHHHHH-----HHHHhc-CCCCHHHHHHHHHHHHHHHHHhcCCCc
Q psy5114 116 ------FKQATEGPCKQP-KPSFWDVVRKAKW-----DAWKKL-GNMGKEEAMEAYVEELKKIVETMAYND 173 (394)
Q Consensus 116 ------YKQAT~Gdc~~p-rPg~~D~~~raKw-----dAW~~l-ggMS~eEAm~~YVe~v~~ii~~~~~t~ 173 (394)
|||...|+..+. -|. .++..+++ |+|+++ +|=+..--+..|++.. -..|.+|.
T Consensus 383 ~L~~~~f~~IVdG~s~tgKcPP--QViAAAqyF~~hpd~W~~l~~g~~~~v~k~dflq~a---ss~m~LT~ 448 (624)
T PF05819_consen 383 NLSLEDFKQIVDGDSKTGKCPP--QVIAAAQYFVDHPDEWKQLYGGPSDKVSKEDFLQVA---SSSMHLTA 448 (624)
T ss_pred ccCHHHHHhHhcCccccCCCCH--HHHHHHHHHHhChHHHHHhcCCCccccchhHHHHHH---HhhcccCh
Confidence 799999988753 332 57778887 999999 4433333333444333 34444443
No 26
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=38.31 E-value=51 Score=29.42 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Q psy5114 321 LSDNIRNIQTDLASISERIKRLEVLSKLL 349 (394)
Q Consensus 321 i~~tv~~Lq~dm~~V~~Rl~~LE~~~~~~ 349 (394)
+...|.+++.|++.|+..|+.||.....+
T Consensus 94 v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 94 VREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788889999999999999887765
No 27
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=34.92 E-value=3.5e+02 Score=24.59 Aligned_cols=55 Identities=22% Similarity=0.315 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCCCCCCCCC--ChHHHHHHHhhhhhhhcccccccccccCCCCCCChHHHHHHHHHHHhcCCCC
Q psy5114 27 EKFHAAVNVIRNLPKNGAYQP--SNDLMLRFYSYFKQVKIQNTRLFIEDQTTPAKMTTEEKFHAAVNVIRNLPKN 99 (394)
Q Consensus 27 e~F~~Av~~vk~L~k~g~~~p--sn~~~L~~YalYKQAT~Gdcn~~~~~~~~PgmmdleekFeaAw~~VK~L~ke 99 (394)
..|+.|++.+..|..+.|+.+ .+.++-..|++||+.-- +++...+-.+|+-.|..
T Consensus 24 ~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y------------------~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 24 GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDY------------------EEAIAAYDRFIRLHPTH 80 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCH------------------HHHHHHHHHHHHhCCCC
Confidence 468999999999988887754 46677788999998653 56677777888888864
No 28
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=33.78 E-value=22 Score=25.83 Aligned_cols=12 Identities=17% Similarity=0.697 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHH
Q psy5114 370 TFLVLWPILTQL 381 (394)
Q Consensus 370 ~~lilWPfvvq~ 381 (394)
+..++||||-||
T Consensus 27 ~~~~a~Pfv~s~ 38 (41)
T PF10399_consen 27 AAAAAWPFVSSM 38 (41)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhcc
Confidence 567899999876
No 29
>PF11157 DUF2937: Protein of unknown function (DUF2937); InterPro: IPR022584 This family of proteins with unknown function appears to be found mainly in Proteobacteria.
Probab=32.82 E-value=1.2e+02 Score=28.11 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhH
Q psy5114 324 NIRNIQTDLASISERIKRLEVLSKLL 349 (394)
Q Consensus 324 tv~~Lq~dm~~V~~Rl~~LE~~~~~~ 349 (394)
.+++=-++|+.+.+|.+.|++-.+.+
T Consensus 72 ~~~~~a~~~~~~~~R~~~L~~~~~~l 97 (167)
T PF11157_consen 72 VFRARAESMQATIERYQRLSQQLQAL 97 (167)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567888888888888766655
No 30
>PF08020 DUF1706: Protein of unknown function (DUF1706) ; InterPro: IPR012550 This family contains many hypothetical proteins from bacteria and yeast.
Probab=32.79 E-value=3.5e+02 Score=25.02 Aligned_cols=87 Identities=16% Similarity=0.388 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhcCCCCCCC---------CCCHHHHHHHHHh-------hhhcccCCC-CCCCCCc-ccHHHHHHHHHHH
Q psy5114 83 EEKFHAAVNVIRNLPKNGAY---------QPSNDLMLRFYSY-------FKQATEGPC-KQPKPSF-WDVVRKAKWDAWK 144 (394)
Q Consensus 83 eekFeaAw~~VK~L~kega~---------~ps~e~~L~LYal-------YKQAT~Gdc-~~prPg~-~D~~~raKwdAW~ 144 (394)
+..|..-++.+..++.+... .-..|+...||+. ++.-..|.. ..|.||+ |+-.|.--..-|.
T Consensus 15 ~~~~~kL~~~~~~ipee~~~~~~~~~~~d~~~~DvLayl~gW~~LlL~W~~~~~~G~~~~fp~~gykWn~lg~Ln~~f~~ 94 (166)
T PF08020_consen 15 EKNYEKLISEIDSIPEEQKDTPFDFGGRDRNPRDVLAYLYGWHELLLKWEEDEQAGEEVDFPAPGYKWNQLGELNQSFYE 94 (166)
T ss_pred HHHHHHHHHHHHhCCHHHhcCccccccccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCChhhhhHHHHHHHH
Confidence 34555566666665543211 1234566666654 555566754 4677774 8888888889999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHHhc
Q psy5114 145 KLGNMGKEEAMEAYVEELKKIVETM 169 (394)
Q Consensus 145 ~lggMS~eEAm~~YVe~v~~ii~~~ 169 (394)
...+.|-+|+....-+...+|+.-+
T Consensus 95 ~y~~~sl~e~~~~l~~s~~~v~~lI 119 (166)
T PF08020_consen 95 KYQDTSLEELKALLKESHQKVIALI 119 (166)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888776654
No 31
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=32.76 E-value=71 Score=31.90 Aligned_cols=29 Identities=14% Similarity=0.416 Sum_probs=23.7
Q ss_pred cCCCccCCCCCChhHHHHHHHHHHHHHHHH
Q psy5114 354 SENSAWSLIRNNVPLVTFLVLWPILTQLMS 383 (394)
Q Consensus 354 ~~p~wWpf~~~Sp~~l~~lilWPfvvq~l~ 383 (394)
.....+.+ ..|.+++.+.++||.|+....
T Consensus 135 ~~GC~~~~-~~s~~~~~l~~iwp~i~~lia 163 (283)
T PF02076_consen 135 DVGCYPAI-YPSWPTIFLFIIWPPIFSLIA 163 (283)
T ss_pred ccCCccCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 45666777 889999999999999987654
No 32
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=31.16 E-value=55 Score=33.18 Aligned_cols=25 Identities=20% Similarity=0.631 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5114 369 VTFLVLWPILTQLMSLWIQTRRRQS 393 (394)
Q Consensus 369 l~~lilWPfvvq~l~~~~~~rrr~~ 393 (394)
.+|||+.-.|+=.|.-||.|||.+|
T Consensus 265 alvllil~vvliiLYiWlyrrRK~s 289 (295)
T TIGR01478 265 ALVLIILTVVLIILYIWLYRRRKKS 289 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3445555556666778888777654
No 33
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=29.79 E-value=1e+02 Score=27.70 Aligned_cols=35 Identities=17% Similarity=0.367 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhHhH
Q psy5114 315 TVLLDSLSDNIRNI----QTDLASISERIKRLEVLSKLL 349 (394)
Q Consensus 315 ~~l~~qi~~tv~~L----q~dm~~V~~Rl~~LE~~~~~~ 349 (394)
.-|++.+..+|.|| +.|++.+..||..|+..+..+
T Consensus 90 ~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l 128 (132)
T PF05597_consen 90 QAFDERVARALNRLGVPSRKDVEALSARIDQLTAQVERL 128 (132)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999998 799999999999999887765
No 34
>PTZ00370 STEVOR; Provisional
Probab=29.09 E-value=61 Score=32.87 Aligned_cols=25 Identities=20% Similarity=0.606 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q psy5114 369 VTFLVLWPILTQLMSLWIQTRRRQS 393 (394)
Q Consensus 369 l~~lilWPfvvq~l~~~~~~rrr~~ 393 (394)
.+|||+.-.|+=.|.-||.|||.+|
T Consensus 261 alvllil~vvliilYiwlyrrRK~s 285 (296)
T PTZ00370 261 ALVLLILAVVLIILYIWLYRRRKNS 285 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcch
Confidence 3444555555556678888777654
No 35
>PRK14127 cell division protein GpsB; Provisional
Probab=27.65 E-value=1.8e+02 Score=25.35 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Q psy5114 315 TVLLDSLSDNIRNIQTDLASISERIKRLEVLSKLL 349 (394)
Q Consensus 315 ~~l~~qi~~tv~~Lq~dm~~V~~Rl~~LE~~~~~~ 349 (394)
.+++.+|+..+.+|.....++.+++..||..++.+
T Consensus 29 D~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~ 63 (109)
T PRK14127 29 DKFLDDVIKDYEAFQKEIEELQQENARLKAQVDEL 63 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999887776
No 36
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=27.20 E-value=1.8e+02 Score=25.70 Aligned_cols=41 Identities=27% Similarity=0.443 Sum_probs=33.2
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Q psy5114 308 SGVLKPKTVLLDSLSDNIRNIQTDLASISERIKRLEVLSKL 348 (394)
Q Consensus 308 ~~~~~~~~~l~~qi~~tv~~Lq~dm~~V~~Rl~~LE~~~~~ 348 (394)
+.+..++..+-+.+..+|+++..-++.++.+|..|+..-..
T Consensus 8 ~~~~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~ 48 (120)
T PF12325_consen 8 TSSGGPSVQLVERLQSQLRRLEGELASLQEELARLEAERDE 48 (120)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444467888999999999999999999999999865443
No 37
>PF02840 Prp18: Prp18 domain; InterPro: IPR004098 The splicing factor Prp18 is required for the second step of pre-mRNA splicing. PRP18 appears to be primarily associated with the U5 snRNP. The structure of a large fragment of the Saccharomyces cerevisiae Prp18 is known []. This fragment is fully active in yeast splicing in vitro and includes the sequences of Prp18 that have been evolutionarily conserved. The core structure consists of five alpha-helices that adopt a novel fold. The most highly conserved region of Prp18, a nearly invariant stretch of 19 aa, forms part of a loop between two alpha-helices and may interact with the U5 small nuclear ribonucleoprotein particles [].; GO: 0008380 RNA splicing, 0005681 spliceosomal complex; PDB: 1DVK_A.
Probab=26.97 E-value=2.2e+02 Score=26.05 Aligned_cols=93 Identities=12% Similarity=0.268 Sum_probs=42.9
Q ss_pred HHHHHHHhhhhhhhcccccccccccCCCCCCChHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhhhhcccCCCCCCCC
Q psy5114 50 DLMLRFYSYFKQVKIQNTRLFIEDQTTPAKMTTEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKP 129 (394)
Q Consensus 50 ~~~L~~YalYKQAT~Gdcn~~~~~~~~PgmmdleekFeaAw~~VK~L~kega~~ps~e~~L~LYalYKQAT~Gdc~~prP 129 (394)
+.+-.+.-||++..-++++ ++-...-...+..+.+. +-.+-+..|.+.++|.. +-|
T Consensus 38 qtk~~l~PL~~~Lk~~~l~--------------~dil~~L~~Iv~~~q~r--------~y~~And~Yl~LsIGna--~WP 93 (144)
T PF02840_consen 38 QTKRYLKPLFKKLKKRTLP--------------EDILDSLATIVYHLQQR--------EYVKANDAYLKLSIGNA--AWP 93 (144)
T ss_dssp HHHHHHHHHHHHHHCT-S---------------HHHHHHHHHHHHHHCCC--------GHHHHHHHHHHHHTTB------
T ss_pred HHHHHHHHHHHHHHhCCCC--------------HHHHHHHHHHHHHHHHh--------HHHHHHHHHHHHHhcCC--CCc
Confidence 3444455566666655554 23344444455444432 35666778888889854 333
Q ss_pred ------CcccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy5114 130 ------SFWDVVRKAKWDAWKKLGNMGKEEAMEAYVEELKKIVE 167 (394)
Q Consensus 130 ------g~~D~~~raKwdAW~~lggMS~eEAm~~YVe~v~~ii~ 167 (394)
|.-.-.++.|-.+ +...++=-+|..++||..++.++.
T Consensus 94 IGVt~vGIHeRsareki~~-~~vAhimnDE~tRk~iq~iKRLit 136 (144)
T PF02840_consen 94 IGVTMVGIHERSAREKIFS-SNVAHIMNDETTRKYIQSIKRLIT 136 (144)
T ss_dssp SS----------------------B----HHHHHHHHHHHHHHH
T ss_pred ceeeeechhhhhHHHHHhc-cchhHHhccHHHHHHHHHHHHHHH
Confidence 4445566788888 888999999999999999998875
No 38
>KOG3202|consensus
Probab=26.16 E-value=1.2e+02 Score=29.81 Aligned_cols=34 Identities=9% Similarity=0.185 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhH
Q psy5114 315 TVLLDSLSDNIRNIQTDLASISERIKRLEVLSKLL 349 (394)
Q Consensus 315 ~~l~~qi~~tv~~Lq~dm~~V~~Rl~~LE~~~~~~ 349 (394)
.||.+| ...|..|-.+|+.+..||+..-..++-.
T Consensus 173 ~EL~~Q-~~llDdl~~e~d~t~srl~~~~~~l~~v 206 (235)
T KOG3202|consen 173 EELEEQ-GRLLDDLDNEMDRTESRLDRVMKRLAKV 206 (235)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666 4566788888888888888777666543
No 39
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=25.44 E-value=73 Score=20.59 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhhH
Q psy5114 330 TDLASISERIKRLEVLSK 347 (394)
Q Consensus 330 ~dm~~V~~Rl~~LE~~~~ 347 (394)
++|++...||..||+.+.
T Consensus 1 ~E~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 1 REMNRLRNRISDLERQLS 18 (23)
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 368899999999997765
No 40
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=23.92 E-value=58 Score=23.68 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=20.0
Q ss_pred ccCCCCCChhHHHHHHHHHHHHHHHH-HHHHH
Q psy5114 358 AWSLIRNNVPLVTFLVLWPILTQLMS-LWIQT 388 (394)
Q Consensus 358 wWpf~~~Sp~~l~~lilWPfvvq~l~-~~~~~ 388 (394)
|..+ .++.-.++.+|+|+..-++-. +-+++
T Consensus 9 W~sY-g~t~l~l~~li~~~~~~~r~~~~~l~~ 39 (45)
T TIGR03141 9 WLAY-GITALVLAGLILWSLLDRRRLLRELRR 39 (45)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555 667777888888888766554 44444
No 41
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=23.74 E-value=1.1e+02 Score=27.20 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhhcC
Q psy5114 377 ILTQLMSLWIQTRRRQSR 394 (394)
Q Consensus 377 fvvq~l~~~~~~rrr~~~ 394 (394)
|++.++++.+|+||+|+|
T Consensus 137 ~l~~~~~~~~r~~r~~~r 154 (154)
T PF09835_consen 137 FLVYFLVRKYRKRRRKRR 154 (154)
T ss_pred HHHHHHHHHHHHHHHhCc
Confidence 466677777787777766
No 42
>PRK10884 SH3 domain-containing protein; Provisional
Probab=22.56 E-value=1.4e+02 Score=28.66 Aligned_cols=40 Identities=5% Similarity=0.030 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhHhhhccCCCccCC
Q psy5114 321 LSDNIRNIQTDLASISERIKRLEVLSKLLAVQRSENSAWSL 361 (394)
Q Consensus 321 i~~tv~~Lq~dm~~V~~Rl~~LE~~~~~~~~~~~~p~wWpf 361 (394)
|..--++|++-++..++.++.||...+.+.. ...-.||-.
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~-~~~~~wf~~ 176 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQR-TIIMQWFMY 176 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3344445555555555555555555554322 233446644
No 43
>PF13584 BatD: Oxygen tolerance
Probab=22.05 E-value=1.1e+02 Score=32.18 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=16.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5114 365 NVPLVTFLVLWPILTQLMSLWIQTRRR 391 (394)
Q Consensus 365 Sp~~l~~lilWPfvvq~l~~~~~~rrr 391 (394)
...++.++++.|+++-+++.++.+|||
T Consensus 424 ~~~~~~~l~~~~~l~~~~~~~~~~~~~ 450 (484)
T PF13584_consen 424 GNWWFWLLLLLPLLLLLLLLILRRKRR 450 (484)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566676777777777755555444
No 44
>KOG3287|consensus
Probab=21.52 E-value=1.6e+02 Score=29.03 Aligned_cols=70 Identities=13% Similarity=0.274 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhH---hhh--------ccCCCccCCCCCChhHHHHHHHHHHHHHHHH
Q psy5114 315 TVLLDSLSDNIRNIQTDLASISERIKRLEVLSKLL---AVQ--------RSENSAWSLIRNNVPLVTFLVLWPILTQLMS 383 (394)
Q Consensus 315 ~~l~~qi~~tv~~Lq~dm~~V~~Rl~~LE~~~~~~---~~~--------~~~p~wWpf~~~Sp~~l~~lilWPfvvq~l~ 383 (394)
.+..+|+-.+|+...+..+.|..||...++.-+.+ ..+ =.+=.||.. ..+++.+++==+.|-.|=
T Consensus 145 ~e~~~~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr~L~esNf~rVN~WS~----vq~~vmi~v~~iQVf~lr 220 (236)
T KOG3287|consen 145 KERTEQLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDRNLQESNFDRVNFWSM----VQTLVMILVGIIQVFMLR 220 (236)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcccchhhHHHH----HHHHHHHHHhhhhhhhhH
Confidence 55667999999999999999999999999876654 110 134468865 445444444444444444
Q ss_pred HHHHH
Q psy5114 384 LWIQT 388 (394)
Q Consensus 384 ~~~~~ 388 (394)
++|+.
T Consensus 221 slFe~ 225 (236)
T KOG3287|consen 221 SLFEV 225 (236)
T ss_pred HHhcC
Confidence 66664
No 45
>PF06031 SERTA: SERTA motif; InterPro: IPR009263 This entry represents a novel motif designated as SERTA (for SEI-1, RBT1, and TARA), corresponding to the largest conserved region among TRIP-Br proteins []. The function of this motif is uncertain, but the CDK4-interacting segment of p34SEI-1 (amino acid residues 44-161) includes most of the SERTA motif [].
Probab=20.73 E-value=54 Score=23.58 Aligned_cols=15 Identities=20% Similarity=0.461 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy5114 319 DSLSDNIRNIQTDLA 333 (394)
Q Consensus 319 ~qi~~tv~~Lq~dm~ 333 (394)
--|.+|++++|++|+
T Consensus 24 VLI~Ntlr~iq~E~~ 38 (38)
T PF06031_consen 24 VLINNTLRRIQEEIR 38 (38)
T ss_pred hhhhhhHHHHHHHhC
Confidence 348999999999984
No 46
>PF12041 DELLA: Transcriptional regulator DELLA protein N terminal; InterPro: IPR021914 Gibberellins are plant hormones which have great impact on growth signalling. DELLA proteins are transcriptional regulators of growth related proteins which are downregulated when gibberellins bind to their receptor GID1. GID1 forms a complex with DELLA proteins and signals them towards 26S proteasome. The N-terminal of DELLA proteins contains conserved DELLA and VHYNP motifs which are important for GID1 binding and proteolysis of the DELLA proteins [].; PDB: 2ZSH_B 2ZSI_B.
Probab=20.50 E-value=92 Score=25.48 Aligned_cols=18 Identities=22% Similarity=0.639 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhhH
Q psy5114 330 TDLASISERIKRLEVLSK 347 (394)
Q Consensus 330 ~dm~~V~~Rl~~LE~~~~ 347 (394)
.||++|-+||+.||....
T Consensus 14 SdmadVAQkLEqLE~vmg 31 (73)
T PF12041_consen 14 SDMADVAQKLEQLEMVMG 31 (73)
T ss_dssp GGHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHc
Confidence 699999999999997744
No 47
>COG4283 Uncharacterized conserved protein [Function unknown]
Probab=20.40 E-value=6.9e+02 Score=23.52 Aligned_cols=88 Identities=14% Similarity=0.374 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhcCCCCC---CC------CCCHHHHHHHHHhhh-------hcccCCC-CCCCCCc-ccHHHHHHHHHHH
Q psy5114 83 EEKFHAAVNVIRNLPKNG---AY------QPSNDLMLRFYSYFK-------QATEGPC-KQPKPSF-WDVVRKAKWDAWK 144 (394)
Q Consensus 83 eekFeaAw~~VK~L~keg---a~------~ps~e~~L~LYalYK-------QAT~Gdc-~~prPg~-~D~~~raKwdAW~ 144 (394)
++.|+..+..+.+++.+. ++ +-..|.+..+|+... --.-|.- .+|.||+ |.-.|.--..-|+
T Consensus 15 ~~syeKl~~li~~i~ee~k~~~f~f~drdkn~rd~l~hl~eWh~LlL~W~~~e~~G~~~f~Ps~~ykWn~~geln~~F~k 94 (170)
T COG4283 15 EESYEKLLSLIESISEELKDTRFDFVDRDKNPRDNLAHLVEWHNLLLNWEQDEKRGLKVFTPSPGYKWNNLGELNQWFWK 94 (170)
T ss_pred HHHHHHHHHHHHhccHHHhcCCCChhcccCCHHHHHHHHHHHHHHHHHHHHHhhcCCcCCCCCCCCcccccHHHHHHHHH
Confidence 455666777776665432 22 234577888887643 3344644 4788875 7777777778999
Q ss_pred hcCCCCHHHHHHHHHHHHH---HHHHhcC
Q psy5114 145 KLGNMGKEEAMEAYVEELK---KIVETMA 170 (394)
Q Consensus 145 ~lggMS~eEAm~~YVe~v~---~ii~~~~ 170 (394)
...++|-.|+++..=+.+. ++|+.++
T Consensus 95 kyq~~SL~e~~~~L~k~h~~v~~lI~~~S 123 (170)
T COG4283 95 KYQHLSLKELKAKLNKNHNDVYELIDEFS 123 (170)
T ss_pred HhhhccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999987755554 5555553
No 48
>TIGR02978 phageshock_pspC phage shock protein C. All members of this protein family are the phage shock protein PspC. These proteins contain a PspC domain, as do other members of the larger family of proteins described by Pfam model pfam04024. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor, PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin overexpression, ethanol, heat shock, and protein export defects.
Probab=20.09 E-value=1.4e+02 Score=26.43 Aligned_cols=26 Identities=12% Similarity=0.452 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy5114 322 SDNIRNIQTDLASISERIKRLEVLSK 347 (394)
Q Consensus 322 ~~tv~~Lq~dm~~V~~Rl~~LE~~~~ 347 (394)
..+++++++.++++-+||+.+|.-.-
T Consensus 83 ~~~l~~~~~~~~~~e~Rl~~mE~yVT 108 (121)
T TIGR02978 83 RQALREVKREFRDLERRLRNMERYVT 108 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788999999999999999997654
Done!