RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5114
(394 letters)
>gnl|CDD|216174 pfam00887, ACBP, Acyl CoA binding protein.
Length = 87
Score = 135 bits (341), Expect = 3e-39
Identities = 46/88 (52%), Positives = 63/88 (71%), Gaps = 2/88 (2%)
Query: 83 EEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDA 142
EE+F AAV ++ LPK+G +PSN+ L+ Y+ +KQATEG P+P +DV+ KAKWDA
Sbjct: 2 EEEFEAAVKFVKKLPKDG--RPSNEEKLKLYALYKQATEGDVNTPRPGMFDVIGKAKWDA 59
Query: 143 WKKLGNMGKEEAMEAYVEELKKIVETMA 170
WKKL M KEEAM+ YVE ++++VE
Sbjct: 60 WKKLKGMSKEEAMKKYVELVEELVEKYG 87
>gnl|CDD|238248 cd00435, ACBP, Acyl CoA binding protein (ACBP) binds thiol esters
of long fatty acids and coenzyme A in a one-to-one
binding mode with high specificity and affinity.
Acyl-CoAs are important intermediates in fatty lipid
synthesis and fatty acid degradation and play a role in
regulation of intermediary metabolism and gene
regulation. The suggested role of ACBP is to act as a
intracellular acyl-CoA transporter and pool former.
ACBPs are present in a large group of eukaryotic species
and several tissue-specific isoforms have been detected.
Length = 85
Score = 118 bits (297), Expect = 6e-33
Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 4/88 (4%)
Query: 83 EEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDA 142
+E+F AA ++ L PSN+ L+ YS +KQAT G C +P +D+ +AKWDA
Sbjct: 2 QEEFEAAAEKVKKLKTK----PSNEEKLQLYSLYKQATVGDCNTERPGMFDLKGRAKWDA 57
Query: 143 WKKLGNMGKEEAMEAYVEELKKIVETMA 170
W L M KE+AM+AY+ ++++++ A
Sbjct: 58 WNSLKGMSKEDAMKAYIAKVEELIAKYA 85
Score = 42.3 bits (100), Expect = 2e-05
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 26 EEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQ 61
+E+F AA ++ L PSN+ L+ YS +KQ
Sbjct: 2 QEEFEAAAEKVKKLKTK----PSNEEKLQLYSLYKQ 33
>gnl|CDD|185637 PTZ00458, PTZ00458, acyl CoA binding protein; Provisional.
Length = 90
Score = 64.8 bits (158), Expect = 2e-13
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 83 EEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDA 142
+ F V+ I +LPK S ++ L Y Y+KQ+T G C +PS + + K++A
Sbjct: 2 ADLFEECVSFINSLPKT--VNLSVEIKLDLYKYYKQSTVGNCNIKEPSMFKYQDRKKYEA 59
Query: 143 WKKLGNMGKEEAMEAYVEELKKI 165
WK + N+ +E+A + YVE + ++
Sbjct: 60 WKSIENLNREDAKKRYVEIVTEL 82
Score = 30.6 bits (69), Expect = 0.33
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 26 EEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQVKIQN 66
+ F V+ I +LPK S ++ L Y Y+KQ + N
Sbjct: 2 ADLFEECVSFINSLPKT--VNLSVEIKLDLYKYYKQSTVGN 40
>gnl|CDD|226731 COG4281, ACB, Acyl-CoA-binding protein [Lipid metabolism].
Length = 87
Score = 64.5 bits (157), Expect = 3e-13
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 86 FHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDAWKK 145
F A ++ L + +PSND +L+ Y+ FKQ + G KP F+D+V + K++AW
Sbjct: 6 FEQAQTDVKELSE----KPSNDELLKLYALFKQGSVGDNDGEKPGFFDIVGRYKYEAWAG 61
Query: 146 LGNMGKEEAMEAY---VEELK 163
L +E+A + Y VEELK
Sbjct: 62 LKGKSQEDARQEYIALVEELK 82
Score = 26.4 bits (58), Expect = 8.6
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 29 FHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQ 61
F A ++ L + +PSND +L+ Y+ FKQ
Sbjct: 6 FEQAQTDVKELSE----KPSNDELLKLYALFKQ 34
>gnl|CDD|237229 PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase; Reviewed.
Length = 282
Score = 31.0 bits (71), Expect = 1.0
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 359 WSLIRNNVPLVTFLVLWPILTQLMSLWI 386
L+R + P+ T L+LWP L +LW+
Sbjct: 9 ARLMRLDKPIGTLLLLWPT---LWALWL 33
>gnl|CDD|235438 PRK05382, PRK05382, chorismate synthase; Validated.
Length = 359
Score = 30.4 bits (70), Expect = 1.4
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 7/29 (24%)
Query: 151 KEEAMEAYVEELKK-------IVETMAYN 172
EE ME ++E KK +VE +A
Sbjct: 180 AEEEMEELIDEAKKEGDSLGGVVEVVAEG 208
>gnl|CDD|216334 pfam01153, Glypican, Glypican.
Length = 559
Score = 30.4 bits (69), Expect = 1.7
Identities = 25/143 (17%), Positives = 50/143 (34%), Gaps = 18/143 (12%)
Query: 146 LGNMGK-EEAMEAYVEELKKIVETMAYNDNVETFMGSLDS-FYENVPAEELDMILGKEKV 203
L N + Y++ L + E + N+E+ + + E + + M K+
Sbjct: 274 LANQADLDTEWRNYIDSLLLLAERLEGPFNIESVLLPIHVKISEAI----MHMQENSVKL 329
Query: 204 QTLVKGVCMVFVSIEPGPVIERVRSQPGSPLNK-SPLGSPHEKSPLVSRDASPSRTALNG 262
V C PG RS + K +P E+ + + T L+
Sbjct: 330 TAKVFQGC-GTPKPTPGR---SARSPEEASFKKRFRKYTPEERPT------TAAGTNLDR 379
Query: 263 IKTNGTAS-KPASKFYTTLDDQV 284
+ T + + F+++L D +
Sbjct: 380 LVTEFKSKLREFKSFWSSLPDTL 402
>gnl|CDD|227138 COG4801, COG4801, Predicted acyltransferase [General function
prediction only].
Length = 277
Score = 29.8 bits (67), Expect = 2.4
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 355 ENSAWSLIRNNVPLVTFLVLWPILTQLMSL 384
W +IRN VP++ FL L+ L+ L+ L
Sbjct: 106 VAKGWIVIRNPVPVLEFLFLY--LSVLLRL 133
>gnl|CDD|214604 smart00295, B41, Band 4.1 homologues. Also known as
ezrin/radixin/moesin (ERM) protein domains. Present in
myosins, ezrin, radixin, moesin, protein tyrosine
phosphatases. Plasma membrane-binding domain. These
proteins play structural and regulatory roles in the
assembly and stabilization of specialized plasmamembrane
domains. Some PDZ domain containing proteins bind one or
more of this family. Now includes JAKs.
Length = 201
Score = 29.2 bits (66), Expect = 2.9
Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 19/85 (22%)
Query: 99 NGAYQPSNDLMLRFYSYFKQATEGPCKQPK--------------PSFWDVVRKAKW---- 140
G + L + QA G + D + +W
Sbjct: 108 EGRLPCPEEEALLLAALALQAEFGDYDEELHDLRGELSLKRFLPKQLLDSRKLKEWRERI 167
Query: 141 -DAWKKLGNMGKEEAMEAYVEELKK 164
+ K+L + EEA Y+E +K
Sbjct: 168 VELHKELIGLSPEEAKLKYLELARK 192
>gnl|CDD|237565 PRK13934, PRK13934, stationary phase survival protein SurE;
Provisional.
Length = 266
Score = 29.4 bits (66), Expect = 3.0
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 271 KPAS-KFYTTLDDQVVERGKKYTELASTGVNSSPGHNSSGVLKPKTVLLDSLSDNIRNIQ 329
K A +F ++ +V RG+ Y L T + PG + VLK + + L+ N+ +
Sbjct: 186 KAAKLRFAQQVERRVDPRGRAYYWLYGTPLEPEPGTDVYVVLKEGNIAITPLTLNLNALD 245
Query: 330 TDLASISERIKRL 342
+ A+ E +KRL
Sbjct: 246 GERAADLEALKRL 258
>gnl|CDD|227363 COG5030, APS2, Clathrin adaptor complex, small subunit
[Intracellular trafficking and secretion].
Length = 152
Score = 27.8 bits (62), Expect = 6.2
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 169 MAYNDNVETFMGSLDSFYENVPAEELDMILGKEKV 203
+ + + F+ LD F+ NV ELD+I +KV
Sbjct: 78 LIILELIHNFVEILDRFFGNVC--ELDLIFNFQKV 110
>gnl|CDD|237254 PRK12899, secA, preprotein translocase subunit SecA; Reviewed.
Length = 970
Score = 28.7 bits (64), Expect = 6.7
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 23 MTTEEKFHAAVNVIRNLPKNGAYQP------SNDLMLRFYSYFKQVKIQNTRLFIEDQTT 76
MT EK+HA V I ++ + G P S ++ + +Q +I++T L ++
Sbjct: 548 MTEREKYHAIVAEIASIHRKG--NPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQ 605
Query: 77 PAKMTTEEKFHAAVNVIRNLPKNG 100
A++ AV V N+ G
Sbjct: 606 EAEIIAGAGKLGAVTVATNMAGRG 629
>gnl|CDD|219327 pfam07195, FliD_C, Flagellar hook-associated protein 2 C-terminus.
The flagellar hook-associated protein 2 (HAP2 or FliD)
forms the distal end of the flagella, and plays a role
in mucin specific adhesion of the bacteria. This
alignment covers the C-terminal region of this family of
proteins.
Length = 230
Score = 28.0 bits (63), Expect = 8.0
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 306 NSSGVLKPKTVLLDSLSDNIRNIQTDLASISERIKRLE 343
+ +G+L + DSL+ I+ + + + R+ LE
Sbjct: 177 SGNGILASRE---DSLNKQIKRLNKQIEDLDRRLDTLE 211
>gnl|CDD|179187 PRK00965, PRK00965, tetrahydromethanopterin S-methyltransferase
subunit B; Provisional.
Length = 96
Score = 26.8 bits (60), Expect = 8.2
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 310 VLKPKTVLLDSLSDNIRNIQTDLASISERIKRLEVLSKLLAVQRSENSAWSLIRNNVPLV 369
V+ P T L+ + ++I I D+ I E I +LE L+ L EN SL N PL
Sbjct: 13 VMDPDTGLIAEMREDI--IVVDMDPIEEEINKLEALADDL-----EN---SLDPRNPPLN 62
Query: 370 TF 371
++
Sbjct: 63 SY 64
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.130 0.375
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,573,123
Number of extensions: 1857827
Number of successful extensions: 1432
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1427
Number of HSP's successfully gapped: 32
Length of query: 394
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 295
Effective length of database: 6,546,556
Effective search space: 1931234020
Effective search space used: 1931234020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (26.9 bits)