RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5114
(394 letters)
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding,
structural genomics, struct genomics consortium, SGC,
lipid-binding, membrane; HET: STE COA; 1.70A {Homo
sapiens}
Length = 119
Score = 132 bits (333), Expect = 4e-38
Identities = 59/94 (62%), Positives = 77/94 (81%)
Query: 83 EEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDA 142
E +F AAV VI++LPKNG++QP+N++ML+FYS++KQATEGPCK +P FWD + + KWDA
Sbjct: 25 ETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDA 84
Query: 143 WKKLGNMGKEEAMEAYVEELKKIVETMAYNDNVE 176
W LG+M KEEAM AYVEE+KKI+ETM + VE
Sbjct: 85 WSSLGDMTKEEAMIAYVEEMKKIIETMPMTEKVE 118
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid
metabolism, lipid binding protein; HET: MES; 1.61A
{Moniliophthora perniciosa}
Length = 106
Score = 129 bits (326), Expect = 3e-37
Identities = 38/95 (40%), Positives = 57/95 (60%)
Query: 82 TEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWD 141
++ KF AV ++++LPK+G +P+ D L FY YFKQAT G +P D KAKWD
Sbjct: 4 SKAKFDKAVEIVQSLPKDGPIKPTQDEQLYFYKYFKQATVGDVNISRPGLMDFTGKAKWD 63
Query: 142 AWKKLGNMGKEEAMEAYVEELKKIVETMAYNDNVE 176
AWK + KE A + YVE+L +I++ ++ +
Sbjct: 64 AWKSVEGTSKEVAYQKYVEKLLEILKKADTEESKK 98
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing,
fatty acid metabolism, lipid transport, lipid binding
protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Length = 106
Score = 123 bits (309), Expect = 1e-34
Identities = 50/94 (53%), Positives = 69/94 (73%)
Query: 83 EEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDA 142
+++F AAV+VI+NLPKNG+Y+PS + MLRFYSY+KQAT GPC P+P FWD + + KWDA
Sbjct: 9 QKQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDA 68
Query: 143 WKKLGNMGKEEAMEAYVEELKKIVETMAYNDNVE 176
W LG M +EEAM AY+ E+K + + + +
Sbjct: 69 WNSLGKMSREEAMSAYITEMKLVAQKVIDTVPLG 102
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 116
Score = 123 bits (309), Expect = 2e-34
Identities = 38/104 (36%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
Query: 82 TEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWD 141
+++ F ++N ++ L K P N++ L+ Y+ +KQATEGPC PKP +D++ KAKWD
Sbjct: 16 SQKDFENSMNQVKLLKK----DPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWD 71
Query: 142 AWKKLGNMGKEEAMEAYVEELKKIVETMAYNDNVETFMGSLDSF 185
AW LG++ KE A + YV+ + + ++ + VE S S
Sbjct: 72 AWNALGSLPKEAARQNYVDLVSSLSPSLESSSQVEPGTDSGPSS 115
>2lbb_A Acyl COA binding protein; protein binding, structural genomi
seattle structural genomics center for infectious
disease,; NMR {Babesia bovis}
Length = 96
Score = 119 bits (301), Expect = 1e-33
Identities = 36/97 (37%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 77 PAKMTTEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVR 136
M+ + F AAV + N SND L FY Y+KQAT G C +PKP +
Sbjct: 6 HHHMS-ADDFDAAVKYVSNTTT---MMASNDDKLCFYKYYKQATVGDCNKPKPGMLQLQE 61
Query: 137 KAKWDAWKKLGNMGKEEAMEAYVEELKKIVETMAYND 173
K KW+AW L M E A EAYV+ L + + + +
Sbjct: 62 KYKWEAWNALRGMSTESAKEAYVKLLDTLAPS--WRN 96
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA
MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Length = 89
Score = 117 bits (294), Expect = 9e-33
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 83 EEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDA 142
+ F V+ I LP+ N+L L Y Y+KQ+T G C +PS + + K++A
Sbjct: 3 AQVFEECVSFINGLPRTI--NLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEA 60
Query: 143 WKKLGNMGKEEAMEAYVEELKKIVETMAYND 173
WK + N+ +E+A + YV+ + +I + D
Sbjct: 61 WKSVENLNREDAQKRYVDIVSEIFPY--WQD 89
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty
acid, acetylation, alternative splicing, lipid-binding,
transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A
1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Length = 87
Score = 117 bits (294), Expect = 9e-33
Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 82 TEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWD 141
++ +F A +R+L +PS++ ML Y ++KQAT G +P D KAKWD
Sbjct: 2 SQAEFEKAAEEVRHLKT----KPSDEEMLFIYGHYKQATVGDINTERPGMLDFTGKAKWD 57
Query: 142 AWKKLGNMGKEEAMEAYVEELKKIVE 167
AW +L KE+AM+AY+ +++++ +
Sbjct: 58 AWNELKGTSKEDAMKAYINKVEELKK 83
Score = 47.5 bits (113), Expect = 2e-07
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 25 TEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQVKIQN 66
++ +F A +R+L +PS++ ML Y ++KQ + +
Sbjct: 2 SQAEFEKAAEEVRHLKT----KPSDEEMLFIYGHYKQATVGD 39
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport
protein; NMR {Saccharomyces cerevisiae}
Length = 86
Score = 116 bits (291), Expect = 2e-32
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 83 EEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDA 142
+ F + LP +PS D +L Y+ +KQAT G + KP +++ + KW+A
Sbjct: 2 SQLFEEKAKAVNELPT----KPSTDELLELYALYKQATVGDNDKEKPGIFNMKDRYKWEA 57
Query: 143 WKKLGNMGKEEAMEAYVEELKKIVETMA 170
W+ L +E+A + Y+ + +++ +
Sbjct: 58 WENLKGKSQEDAEKEYIALVDQLIAKYS 85
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding
protein, fatty acid, lipid metabolism, structural
genomics; HET: COA PLM; 2.00A {Homo sapiens}
Length = 89
Score = 115 bits (290), Expect = 4e-32
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 80 MTTEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAK 139
M + F A +R L +P + + Y +KQA G P D+ KAK
Sbjct: 2 MALQADFDRAAEDVRKLKA----RPDDGELKELYGLYKQAIVGDINIACPGMLDLKGKAK 57
Query: 140 WDAWKKLGNMGKEEAMEAYVEELKKIVE 167
W+AW + E+A AY+ + K+++E
Sbjct: 58 WEAWNLKKGLSTEDATSAYISKAKELIE 85
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding
protein, COA binding protein, lipid binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 109
Score = 107 bits (268), Expect = 8e-29
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 76 TPAKMTTEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVV 135
+ E F A ++ L + S + +L Y+ +KQ G C PKPSF+D
Sbjct: 2 SSGSSGLAELFEKAAAHLQGLIQ----VASREQLLYLYARYKQVKVGNCNTPKPSFFDFE 57
Query: 136 RKAKWDAWKKLGNMGKEEAMEAYVEELKKIVETMAYNDNVE 176
K KW+AWK LG+ +AM+ Y+ +KK+ +N +
Sbjct: 58 GKQKWEAWKALGDSSPSQAMQEYIAVVKKLDPG--WNPQIP 96
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 2e-08
Identities = 76/442 (17%), Positives = 134/442 (30%), Gaps = 144/442 (32%)
Query: 27 EKFHAAVNVIRNLPK-----NGAYQPSN--DLMLRFYSYFKQVKIQNTRLFIEDQTTPAK 79
E+F+ LP+ +P+ +L+ +F ++ P+K
Sbjct: 35 EQFNK------ILPEPTEGFAADDEPTTPAELVGKFLG------------YVSSLVEPSK 76
Query: 80 MTT------------EEKF------HAAVNVIRNLPK-NGAYQPSNDLMLRFYSYFK--Q 118
+ E + HA + L + N +++ +Y
Sbjct: 77 VGQFDQVLNLCLTEFENCYLEGNDIHA---LAAKLLQENDTTLVKTKELIK--NYITARI 131
Query: 119 ATEGPCKQPKPS-FWDVVRKAKWDAWKKL-------GNMGKEEAMEAYVEELKKIVETMA 170
+ P + S + V + +L GN + Y EEL+ + +T
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGN----AQLVAIFGGQGNT------DDYFEELRDLYQT-- 179
Query: 171 YNDNVETFMGSLDSFYENVPAEELDMILGKEKVQTLVKGVCMVFVSIEPGPVIERVRSQP 230
Y+ V + + LD EKV T +G + +E + P
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLD----AEKVFT--QG-------LNILEWLENPSNTP 226
Query: 231 GSP-LNKSPLGSP--------HEKSPLVSRDASPS--RTALNGIKTNG----TASKPAS- 274
L P+ P H +P R+ L G + TA A
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET 286
Query: 275 ----KFYTTLDDQVVERGKKYTELASTGVNSSPGHNSSGVLK-PKTVLLDSLSDNIRNIQ 329
F+ ++ K T L GV + + P ++L DSL +N +
Sbjct: 287 DSWESFFVSVR-------KAITVLFFIGVRC---YEAYPNTSLPPSILEDSL-ENNEGVP 335
Query: 330 TDLASISERIKRLEVLSKLLAVQRS--ENS--AWSLI---RNNV---PLVTFLVLWPILT 379
+ + SIS + + +V + SL+ +N V P P
Sbjct: 336 SPMLSIS-NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP--------PQ-- 384
Query: 380 QLMSLWIQTRRR-------QSR 394
L L + R+ QSR
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSR 406
Score = 47.4 bits (112), Expect = 8e-06
Identities = 44/250 (17%), Positives = 76/250 (30%), Gaps = 78/250 (31%)
Query: 180 GSLDSFYENVP-AEELDMILGKEKVQTLVKGVCMVF--VSIEPGPVIERVRSQPGSPLNK 236
S +SF+ +V A + +G + + S+ P + + + + G P
Sbjct: 287 DSWESFFVSVRKAITVLFFIGVRCYEA--------YPNTSLPPSILEDSLENNEGVP--- 335
Query: 237 SPLGSPHEKSPLVS-RDASPSRTALNGI--KTNGTASKPASK-FYTTL---DDQVV---- 285
SP++S + ++ + KTN + PA K +L +V
Sbjct: 336 ---------SPMLSISN--LTQEQVQDYVNKTN--SHLPAGKQVEISLVNGAKNLVVSGP 382
Query: 286 ----------ERGKKYTELASTGVNSSPGHNSSGVLKPKTVLL--------DSLSDNIRN 327
R K A +G++ S S LK L L
Sbjct: 383 PQSLYGLNLTLRKAK----APSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 328 IQTDLASISERIKRLEVLSKLLAV----------QRSENSAWSLIRNNVPLVTFL-VLWP 376
I DL + +K + + R + S+ V + L V W
Sbjct: 439 INKDLVKNNVSFN-----AKDIQIPVYDTFDGSDLRVLSG--SISERIVDCIIRLPVKWE 491
Query: 377 ILTQLMSLWI 386
TQ + I
Sbjct: 492 TTTQFKATHI 501
Score = 45.8 bits (108), Expect = 2e-05
Identities = 44/285 (15%), Positives = 82/285 (28%), Gaps = 115/285 (40%)
Query: 21 AKMTTEEKF-HAAVNVIRNLPKN------GA-------------YQPSNDLMLRFYSYFK 60
A ++ + + ++++ N P N G ++ D L+ FK
Sbjct: 1649 ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFK 1708
Query: 61 QVKIQNTRLFIE------DQT--T-PAKMTTEEKFHAAVNVIRNLPKNGAYQPSNDLMLR 111
++ +T T T PA E AA ++ G P++
Sbjct: 1709 EINEHSTSYTFRSEKGLLSATQFTQPALTLME---KAAFEDLK---SKGL-IPADAT--- 1758
Query: 112 F-------YS-------YFKQATEGPCKQPKPSFWDVVR------KAKWDAWKKL----- 146
F Y+ S +V A +
Sbjct: 1759 FAGHSLGEYAALASLADVM-------------SIESLVEVVFYRGMTMQVAVPRDELGRS 1805
Query: 147 ---------GNMGK---EEAMEAYVEELKK----IVETMAYNDNVETFM----GSLDSFY 186
G + +EA++ VE + K +VE N NVE G L
Sbjct: 1806 NYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI-V-NYNVENQQYVAAGDL---- 1859
Query: 187 ENVPAEELDMILGKEKVQ--TLVKGVCMVFVSIEPGPVIERVRSQ 229
+ + + +L K+Q +++ + S+ +E V
Sbjct: 1860 RAL--DTVTNVLNFIKLQKIDIIE----LQKSLS----LEEVEGH 1894
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.1 bits (116), Expect = 2e-06
Identities = 54/418 (12%), Positives = 115/418 (27%), Gaps = 100/418 (23%)
Query: 7 WGKIYPTDKDQTTPAKMTT-----EEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQ 61
W + + +T + + + + + N+ + + K
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK-----LRIHSIQAELRRLLKS 240
Query: 62 VKIQNTRLFIEDQTTPAK------------MTTEEKFHAAVNVIRNLPKNGAYQPS-NDL 108
+N L + AK +TT K V L S +
Sbjct: 241 KPYENC-LLVLLNVQNAKAWNAFNLSCKILLTTRFK-----QVTDFLSAATTTHISLDHH 294
Query: 109 MLRFY-----SYFKQATEGPCKQ-PK------P----SFWDVVR--KAKWDAWKKLGNMG 150
+ S + + + P+ P + +R A WD WK +
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 151 KEEAMEAYVE-----ELKKIVETMA-YNDNVETFMGSLDSFYENVPAEELDMILGKEKVQ 204
+E+ + E +K+ + ++ + + L + +V ++ +++ K
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 205 TLV-KGVCMVFVSIEPG-----------------PVIERVRSQPGSPLNKSPLGSPHE-- 244
+LV K +SI P +++ + L P+
Sbjct: 415 SLVEKQPKESTISI-PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD--LIPPYLDQ 471
Query: 245 -----------KSPLVSRDASPSRTALN------GIKTNGTASKPASKFYTTLDD----- 282
R L+ I+ + TA + TL
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 283 -QVVERGKKYTELASTGVNSSPGHNSSGVLKPKTVLLD-SLSDNIRNIQTDLASISER 338
+ + KY L + ++ P + + T LL +L I + +R
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 47.2 bits (111), Expect = 9e-06
Identities = 61/459 (13%), Positives = 124/459 (27%), Gaps = 165/459 (35%)
Query: 49 NDLMLRFYSYFKQ---VKIQNTRLFIEDQTTPAKMTTEEKFH-----AAVNVIRNL---- 96
D++ F F K ++D ++ EE H AV+ L
Sbjct: 19 KDILSVFEDAFVDNFDCK------DVQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 97 ---PKNGAYQPSNDLMLRFYSYFKQATEGPCKQPK-----------------PSF--WDV 134
+ + +++ Y + + +QP F ++V
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 135 VRKAKWDAWKK---------------LGNMGKEE-AMEAYVEELKKIVETMAYNDNVETF 178
R + ++ + GK A++ + K+ M + + F
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY--KVQCKM--DFKI--F 185
Query: 179 ---MGSLDSFYENVPAEELDMILGKEKVQTLVKGVCMVFVSIEPGPVIERVRSQPGSPLN 235
+ + +S P L+M+ Q L I+P R L
Sbjct: 186 WLNLKNCNS-----PETVLEML------QKL-------LYQIDP-NWTSRSDHSSNIKLR 226
Query: 236 KSPL---------GSPHEKSPLVSRDASPSRT--ALN-GIKTNGTASKPASKFYTTLDDQ 283
+ P+E LV + ++ A N K TT Q
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI----------LLTTRFKQ 276
Query: 284 VVER--GKKYTELASTGVNSSPGHNSSGVLKPKTVLLDSLSDNIRNIQTDL--------- 332
V + T ++ H+S + + L + DL
Sbjct: 277 VTDFLSAATTTHISL-------DHHSMTLTPDEV--KSLLLKYLDCRPQDLPREVLTTNP 327
Query: 333 -------ASISERIKRLE------------VLSKLLAVQRSEN-----SAWSLIRNNV-- 366
SI + + + ++ L V S+ +
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 367 PLVTFLVLWP---------ILTQLM--SLWIQTRRRQSR 394
P + ++W ++ +L SL ++ + ++S
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSL-VEKQPKEST 425
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE;
2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A
Length = 609
Score = 34.0 bits (77), Expect = 0.083
Identities = 20/93 (21%), Positives = 35/93 (37%)
Query: 234 LNKSPLGSPHEKSPLVSRDASPSRTALNGIKTNGTASKPASKFYTTLDDQVVERGKKYTE 293
L S + E+S + S ++ N I + A Q G
Sbjct: 505 LTSSSSKTSSERSLIAGSSTSEAKGTYNTILGSLGAVADEQFAALISASQSRASGNHNLI 564
Query: 294 LASTGVNSSPGHNSSGVLKPKTVLLDSLSDNIR 326
L+S G+N++ + +G + LDSL+ I+
Sbjct: 565 LSSYGINTTGSYKVNGGFEKINWELDSLNGRIK 597
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.61
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 7/30 (23%)
Query: 60 KQV--KIQNT-RLFIEDQTTPA---KMTTE 83
KQ K+Q + +L+ D + PA K T E
Sbjct: 19 KQALKKLQASLKLY-ADDSAPALAIKATME 47
Score = 28.4 bits (62), Expect = 2.6
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Query: 337 ERIKRLEVLSKLLAVQRSENSAWSL-IRNNV 366
+ +K+L+ KL A ++SA +L I+ +
Sbjct: 20 QALKKLQASLKLYA----DDSAPALAIKATM 46
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 0.67
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 133 DVVRKAKWDAWKKLGNMGKEEAMEAYVEELKKIVETMAYNDNVETFMGSLDS 184
D K W++ EE + E+++K D + F D+
Sbjct: 102 DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD--KAFYQQPDA 151
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma
protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1
PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Length = 191
Score = 29.0 bits (64), Expect = 2.2
Identities = 10/73 (13%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 117 KQATEGPCKQPKPSFWDVVRKAKWDAWKKLGNMGKEEAMEAYVEELKKIVETMAYNDNVE 176
+ + Q W++ WD + + + ++ EEL T ++
Sbjct: 12 PELRQQTEWQSGQR-WELALGRFWDYLRWVQTLSEQ-----VQEELLSSQVTQELRALMD 65
Query: 177 TFMGSLDSFYENV 189
M L ++ +
Sbjct: 66 ETMKELKAYKSEL 78
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral
protein; HET: MLR; 2.29A {Escherichia coli}
Length = 523
Score = 28.6 bits (64), Expect = 3.9
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 2/85 (2%)
Query: 129 PSFWDVVRKAKWDAWKKLGNMGKEEAMEAYVEELKKIVETMAYNDNVETFMGSLDSFYEN 188
+FW VR A +A G + A+ A + + A + E L F
Sbjct: 338 SAFWYAVRTAVINAA--SGRQTVDAALAAAQTNAAAMDDLDALLADKEGGGMDLKPFART 395
Query: 189 VPAEELDMILGKEKVQTLVKGVCMV 213
P LD + +E + + CMV
Sbjct: 396 NPFSGLDCLWCREPLTEVDAFRCMV 420
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 28.3 bits (64), Expect = 4.5
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 132 WDVVRKAKWDAWKKLGNMGKEEAMEAYVEELKKIVETMAYNDNVETFMG 180
W+V K K D W KL ++++ +++ + + + VE G
Sbjct: 86 WNVDDKIKPD-WHKL-----VQSVQNHIKSVNWVTRVDLRDKKVEYING 128
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 28.3 bits (64), Expect = 4.6
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 132 WDVVRKAKWDAWKKLGNMGKEEAMEAYVEELKKIVETMAYNDNVETFMG 180
W+V + + + WK + EA++ +V+ L + V+ F
Sbjct: 82 WEVAQPVQHN-WKTM-----AEAVQNHVKSLNWGHRVQLQDRKVKYFNI 124
>2o11_A Chorismate synthase; shikimate pathway, LYA; 1.65A {Mycobacterium
tuberculosis} PDB: 2o12_A* 2qhf_A 2g85_A 1ztb_A
Length = 407
Score = 27.9 bits (63), Expect = 5.6
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 7/29 (24%)
Query: 151 KEEAMEAYVEELKK-------IVETMAYN 172
E M A +E KK +VE +A
Sbjct: 201 AEADMIAQIEAAKKDGDTLGGVVEAVALG 229
>1q1l_A Chorismate synthase; beta alpha beta sandwich, structural genomics,
PSI, protein structure initiative, midwest center for
structural genomics; 2.05A {Aquifex aeolicus} SCOP:
d.258.1.1
Length = 401
Score = 27.9 bits (63), Expect = 6.0
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 7/29 (24%)
Query: 151 KEEAMEAYVEELKK-------IVETMAYN 172
K+E + Y++E+K+ + E A N
Sbjct: 209 KDEEFKTYIDEVKEKGESLGGVFEVFALN 237
>4ecd_A Chorismate synthase; 4-layer sandwich, lyase; 2.50A
{Bifidobacterium longum subsp}
Length = 398
Score = 27.9 bits (63), Expect = 6.9
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 7/29 (24%)
Query: 151 KEEAMEAYVEELKK-------IVETMAYN 172
E + + E KK ++E +AY
Sbjct: 204 AEVRIIERINEAKKAADTLGGVIEVLAYG 232
>1qxo_A Chorismate synthase; beta-alpha-beta, flavoprotein, shikimate,
anti-infective, lyase; HET: FMN EPS; 2.00A
{Streptococcus pneumoniae} SCOP: d.258.1.1
Length = 388
Score = 27.5 bits (62), Expect = 7.5
Identities = 6/29 (20%), Positives = 17/29 (58%), Gaps = 7/29 (24%)
Query: 151 KEEAMEAYVEELKK-------IVETMAYN 172
+E+ ++ Y++++K+ +VET+
Sbjct: 196 REQEIKDYIDQIKRDGDTIGGVVETVVGG 224
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma,
lipid binding protein; 1.7A {Homo sapiens} SCOP:
a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Length = 165
Score = 27.0 bits (59), Expect = 8.5
Identities = 10/73 (13%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 117 KQATEGPCKQPKPSFWDVVRKAKWDAWKKLGNMGKEEAMEAYVEELKKIVETMAYNDNVE 176
+ + Q W++ WD + + + ++ EEL T ++
Sbjct: 12 PELRQQTEWQSGQR-WELALGRFWDYLRWVQTLSEQ-----VQEELLSSQVTQELRALMD 65
Query: 177 TFMGSLDSFYENV 189
M L ++ +
Sbjct: 66 ETMKELKAYKSEL 78
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 27.6 bits (62), Expect = 9.1
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 6/49 (12%)
Query: 132 WDVVRKAKWDAWKKLGNMGKEEAMEAYVEELKKIVETMAYNDNVETFMG 180
W V K D W ++ EA++ ++ L V
Sbjct: 108 WKVEETVKHD-WDRM-----IEAVQNHIGSLNWGYRVALREKKVVYENA 150
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.130 0.375
Gapped
Lambda K H
0.267 0.0816 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,688,751
Number of extensions: 335071
Number of successful extensions: 642
Number of sequences better than 10.0: 1
Number of HSP's gapped: 624
Number of HSP's successfully gapped: 46
Length of query: 394
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 298
Effective length of database: 4,021,377
Effective search space: 1198370346
Effective search space used: 1198370346
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.0 bits)