RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5114
(394 letters)
>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium
falciparum [TaxId: 5833]}
Length = 89
Score = 116 bits (293), Expect = 4e-33
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 83 EEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDA 142
+ F V+ I LP+ N+L L Y Y+KQ+T G C +PS + + K++A
Sbjct: 3 AQVFEECVSFINGLPR--TINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEA 60
Query: 143 WKKLGNMGKEEAMEAYVEELKKIVETMAYND 173
WK + N+ +E+A + YV+ + +I + D
Sbjct: 61 WKSVENLNREDAQKRYVDIVSEIFPY--WQD 89
>d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus)
[TaxId: 9913]}
Length = 86
Score = 111 bits (279), Expect = 4e-31
Identities = 29/87 (33%), Positives = 53/87 (60%), Gaps = 4/87 (4%)
Query: 82 TEEKFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWD 141
++ +F A +++L +P+++ ML YS++KQAT G +P D KAKWD
Sbjct: 1 SQAEFDKAAEEVKHLKT----KPADEEMLFIYSHYKQATVGDINTERPGMLDFKGKAKWD 56
Query: 142 AWKKLGNMGKEEAMEAYVEELKKIVET 168
AW +L KE+AM+AY+++++++ +
Sbjct: 57 AWNELKGTSKEDAMKAYIDKVEELKKK 83
>d1eu8a_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Archaeon
Thermococcus litoralis [TaxId: 2265]}
Length = 407
Score = 31.8 bits (70), Expect = 0.16
Identities = 18/143 (12%), Positives = 45/143 (31%), Gaps = 5/143 (3%)
Query: 28 KFHAAVNVIRNLPKNGAYQPSNDLMLRFYSYFKQVKIQNTRLFIEDQTTPAKMTTEEKFH 87
+ P + L + N L E + ++ F
Sbjct: 266 DDSPVKGKVGVAPLPHFPGHKSAATLGGWHIGISKYSDNKALAWEFVKFVESYSVQKGFA 325
Query: 88 AAVNVI---RNLPKNGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDVVRKAKWDAWK 144
+ ++ + A + + + F+ A P P ++++K A
Sbjct: 326 MNLGWNPGRVDVYDDPAVVSKSPHLKELRAVFENAVPRPIVPYYPQLSEIIQKYVNSAL- 384
Query: 145 KLGNMGKEEAMEAYVEELKKIVE 167
G + +EA++ +E +++V+
Sbjct: 385 -AGKISPQEALDKAQKEAEELVK 406
>d1tz9a_ c.1.15.6 (A:) Mannonate dehydratase UxuA {Enterococcus
faecalis (Streptococcus faecalis) [TaxId: 1351]}
Length = 353
Score = 29.9 bits (67), Expect = 0.49
Identities = 6/56 (10%), Positives = 17/56 (30%), Gaps = 9/56 (16%)
Query: 132 WDVVRKAKWDAWKKLGNMGKEEAMEAYVEELKKI----VETMAYNDNVETFMGSLD 183
+ K G ++ ++ Y + L+ + + + Y+ F
Sbjct: 61 LLGIESVAIHDAIKAGTDQRDHYIDNYRQTLRNLGKCGISLVCYS-----FKPIFG 111
>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 160
Score = 28.9 bits (64), Expect = 0.57
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 124 CKQPKPSFWDVVRKAKWDAWKKLGNMGKEEAMEAYVEELKK 164
+ V+ +D + G M +A YV++L
Sbjct: 112 AGDARN-MAKDVQNTFYDIVAEFGPMEHTQA-VDYVKKLMT 150
>d2dofa1 a.159.2.1 (A:888-959) Transcription elongation regulator 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 27.0 bits (60), Expect = 0.76
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 125 KQPKPSFWDVVRK----AKWDAWKKLGNMGKEEAMEAYVEELKK 164
+ S+ D R +W++ L KE+ ++E L K
Sbjct: 25 RSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIEALTK 68
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 243
Score = 26.9 bits (59), Expect = 3.4
Identities = 13/64 (20%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 148 NMGKEEAMEAYVEELKKIVETMAYNDNVE-TFMGSLDSFYENVPAEELDMILGK--EKVQ 204
++ ++AM + + +E+ +N+E ++ D ++ V EEL + + E+++
Sbjct: 179 DLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIR 238
Query: 205 TLVK 208
L+K
Sbjct: 239 ELLK 242
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 26.9 bits (59), Expect = 4.6
Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 5/88 (5%)
Query: 123 PCKQPKPSFWDVVRKAKWDAWKKLGNMGKEEAMEAYVEELKKIVETMAYNDNVETFMG-S 181
P F +R D L G+ + Y+ K+ + + D
Sbjct: 164 DFVSFFPDFVWTLRDFSLD----LEADGQPLTPDEYLTYSLKLKKGTSQKDETFNLPRLC 219
Query: 182 LDSFYENVPAEELDMILGKEKVQTLVKG 209
+ F+ D + + K+ L K
Sbjct: 220 IRKFFPKKKCFVFDRPVHRRKLAQLEKL 247
>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 271
Score = 26.5 bits (58), Expect = 6.1
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 248 LVSRDAS-PSRTALNGIKTNGTASKPASKFYTTLDDQVVERG 288
+V+ + P R+ + + K A KFY + +V G
Sbjct: 180 IVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANG 221
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 25.9 bits (55), Expect = 8.6
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 138 AKWDAWKKLGNMGKEEAMEAYVEELKKIVET 168
W W++ G E E V L+ ++
Sbjct: 8 NAWSEWERNAPPGNGEQREMAVSRLRDCLDR 38
>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 114
Score = 24.9 bits (54), Expect = 8.9
Identities = 21/80 (26%), Positives = 28/80 (35%), Gaps = 14/80 (17%)
Query: 99 NGAYQPSNDLMLRFYSYFKQATEGPCKQPKPSFWDV---------VRKAKW-----DAWK 144
NG++ S D F Y Q GP + K + K K A K
Sbjct: 31 NGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGFLELKDFLPKEYIKQKGERKIFMAHK 90
Query: 145 KLGNMGKEEAMEAYVEELKK 164
GNM + EA YV+ +
Sbjct: 91 NCGNMSEIEAKVRYVKLARS 110
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.130 0.375
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,385,814
Number of extensions: 63961
Number of successful extensions: 139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 17
Length of query: 394
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 307
Effective length of database: 1,213,086
Effective search space: 372417402
Effective search space used: 372417402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.3 bits)