Query psy5115
Match_columns 171
No_of_seqs 233 out of 1560
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 17:38:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5115.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5115hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ri7_A Nucleosome-remodeling f 100.0 5.1E-50 1.8E-54 289.5 7.9 162 3-164 12-173 (174)
2 3o36_A Transcription intermedi 100.0 9.8E-43 3.4E-47 253.3 17.9 159 2-163 5-182 (184)
3 3u5n_A E3 ubiquitin-protein li 100.0 1.4E-41 4.9E-46 251.3 17.3 161 2-165 8-202 (207)
4 2ro1_A Transcription intermedi 100.0 4.4E-41 1.5E-45 244.9 14.1 158 2-166 3-179 (189)
5 3lqh_A Histone-lysine N-methyl 100.0 2.6E-36 8.9E-41 217.2 8.6 150 3-164 7-165 (183)
6 3g0l_A Hwalp4, bromodomain adj 100.0 3.6E-33 1.2E-37 188.9 14.1 110 56-165 6-115 (117)
7 2d9e_A Peregrin; four-helix bu 100.0 1.5E-32 5.1E-37 186.6 14.1 109 62-170 6-114 (121)
8 3d7c_A General control of amin 100.0 2.2E-32 7.5E-37 183.6 11.9 103 61-163 5-107 (112)
9 3q2e_A Bromodomain and WD repe 100.0 7.3E-32 2.5E-36 183.8 13.1 109 61-169 8-117 (123)
10 2i7k_A Bromodomain-containing 100.0 1.3E-31 4.6E-36 180.6 12.7 101 63-163 8-108 (117)
11 1e6i_A Transcriptional activat 100.0 5.7E-32 1.9E-36 183.8 10.9 102 63-164 13-114 (121)
12 4alg_A Bromodomain-containing 100.0 3.7E-32 1.2E-36 191.7 10.0 114 57-170 26-141 (154)
13 2oss_A HUNK1 protein, bromodom 100.0 1.1E-31 3.9E-36 183.6 12.1 108 57-164 15-124 (127)
14 3rcw_A Bromodomain-containing 100.0 2.8E-31 9.5E-36 183.8 14.1 108 63-170 13-120 (135)
15 3jvl_A Bromodomain-containing 100.0 1.5E-32 5.1E-37 186.6 7.6 110 58-167 4-118 (120)
16 3mb3_A PH-interacting protein; 100.0 2.4E-31 8.1E-36 184.2 13.1 109 61-169 19-128 (135)
17 3nxb_A CAT eye syndrome critic 100.0 1.5E-31 5.2E-36 180.6 11.7 101 62-162 15-115 (116)
18 3iu5_A Protein polybromo-1; PB 100.0 1.3E-31 4.5E-36 180.9 11.3 106 60-165 2-113 (116)
19 2grc_A Probable global transcr 100.0 3.8E-31 1.3E-35 181.6 13.7 111 57-167 5-122 (129)
20 3mb4_A Protein polybromo-1; PB 100.0 1.2E-31 4.2E-36 183.0 11.1 108 57-164 9-122 (124)
21 3mqm_A Probable histone-lysine 100.0 2E-31 6.8E-36 182.5 12.1 109 62-170 8-122 (126)
22 2dat_A Possible global transcr 100.0 1.4E-31 4.8E-36 182.4 11.2 107 59-165 9-121 (123)
23 3p1f_A CREB-binding protein; s 100.0 3E-31 1E-35 179.9 12.5 106 62-167 10-118 (119)
24 2yyn_A Transcription intermedi 100.0 4.6E-31 1.6E-35 182.5 13.3 107 58-165 15-123 (135)
25 2ouo_A HUNK1 protein, bromodom 100.0 1.4E-31 4.8E-36 183.9 9.4 106 60-165 19-129 (130)
26 3ljw_A Protein polybromo-1; al 100.0 7.9E-31 2.7E-35 178.0 12.9 107 61-167 6-118 (120)
27 3hme_A Bromodomain-containing 100.0 8.8E-31 3E-35 178.4 12.6 103 62-164 12-114 (123)
28 3fkm_X Signaling protein; brom 100.0 1.2E-30 4E-35 186.2 12.7 107 58-164 16-124 (166)
29 3k2j_A Protein polybromo-1; PB 100.0 1.8E-30 6E-35 178.3 13.1 106 61-166 15-126 (130)
30 3uv4_A Second bromodomain of h 100.0 1.3E-30 4.4E-35 184.3 11.5 108 63-170 25-137 (158)
31 3dai_A ATPase family AAA domai 100.0 2.5E-29 8.5E-34 172.8 12.1 106 62-167 9-119 (130)
32 3tlp_A Protein polybromo-1; PB 100.0 4.3E-29 1.5E-33 175.7 10.2 103 63-165 24-133 (150)
33 3uv5_A Transcription initiatio 100.0 7.4E-28 2.5E-32 183.9 12.7 107 63-169 14-120 (265)
34 2dkw_A Hypothetical protein KI 99.9 3.7E-27 1.3E-31 161.7 11.2 98 59-161 8-109 (131)
35 3uv5_A Transcription initiatio 99.9 3.3E-27 1.1E-31 180.3 12.1 96 75-170 149-244 (265)
36 3aad_A Transcription initiatio 99.9 1.9E-26 6.6E-31 178.1 12.1 97 74-170 181-277 (292)
37 3aad_A Transcription initiatio 99.9 7E-27 2.4E-31 180.6 7.6 106 63-168 47-152 (292)
38 2r0y_A Chromatin structure-rem 99.9 2.2E-25 7.6E-30 173.2 10.3 85 78-162 178-262 (311)
39 2r10_A Chromatin structure-rem 99.9 6.5E-25 2.2E-29 174.0 10.8 85 78-162 228-312 (361)
40 3iu6_A Protein polybromo-1; PB 99.9 6.9E-22 2.4E-26 136.2 13.9 102 61-166 5-112 (147)
41 2r0y_A Chromatin structure-rem 99.9 2.1E-22 7.3E-27 156.4 9.2 98 64-163 29-129 (311)
42 2r10_A Chromatin structure-rem 99.9 2.2E-22 7.6E-27 159.5 8.7 97 65-163 80-179 (361)
43 1we9_A PHD finger family prote 99.5 2.8E-15 9.6E-20 90.2 3.0 47 3-49 11-57 (64)
44 2kgg_A Histone demethylase jar 99.5 2.6E-15 8.9E-20 86.5 2.3 45 3-48 7-52 (52)
45 1wep_A PHF8; structural genomi 99.5 2.1E-14 7.3E-19 89.8 3.5 48 3-50 16-63 (79)
46 3o7a_A PHD finger protein 13 v 99.5 2E-14 6.7E-19 82.8 2.8 44 3-49 8-51 (52)
47 3kqi_A GRC5, PHD finger protei 99.5 8.7E-15 3E-19 90.7 1.4 46 3-48 14-59 (75)
48 3o70_A PHD finger protein 13; 99.4 7.2E-14 2.5E-18 84.6 3.1 44 3-49 23-66 (68)
49 2vpb_A Hpygo1, pygopus homolog 99.4 9.3E-15 3.2E-19 87.7 -2.3 46 3-48 13-64 (65)
50 1wee_A PHD finger family prote 99.4 2.9E-13 9.8E-18 83.2 3.0 45 3-48 20-64 (72)
51 2xb1_A Pygopus homolog 2, B-ce 99.3 9.7E-14 3.3E-18 91.2 -0.8 46 3-48 8-59 (105)
52 1wew_A DNA-binding family prot 99.3 6E-13 2E-17 82.9 2.0 45 3-48 20-70 (78)
53 2lv9_A Histone-lysine N-methyl 99.3 2E-12 6.8E-17 84.0 3.3 44 3-49 32-75 (98)
54 1wem_A Death associated transc 99.3 4.2E-13 1.4E-17 83.3 -0.6 45 3-48 20-68 (76)
55 1wen_A Inhibitor of growth fam 99.2 9.6E-12 3.3E-16 75.8 4.6 41 4-49 21-64 (71)
56 2g6q_A Inhibitor of growth pro 99.2 4E-12 1.4E-16 75.5 2.7 40 4-48 16-58 (62)
57 2k16_A Transcription initiatio 99.2 5.1E-12 1.7E-16 78.2 3.2 44 3-48 23-66 (75)
58 3c6w_A P28ING5, inhibitor of g 99.2 4.7E-12 1.6E-16 74.5 2.7 40 4-48 14-56 (59)
59 1weu_A Inhibitor of growth fam 99.2 1.4E-11 4.6E-16 78.4 4.1 41 4-49 41-84 (91)
60 2rsd_A E3 SUMO-protein ligase 99.2 9.1E-12 3.1E-16 75.5 2.8 44 4-48 15-63 (68)
61 2vnf_A ING 4, P29ING4, inhibit 99.2 9.9E-12 3.4E-16 73.4 2.7 41 3-48 14-57 (60)
62 3kv4_A PHD finger protein 8; e 99.1 8.4E-12 2.9E-16 100.8 -0.6 46 3-48 9-54 (447)
63 3kv5_D JMJC domain-containing 99.1 1.3E-11 4.6E-16 100.9 0.1 46 3-48 41-86 (488)
64 2jmi_A Protein YNG1, ING1 homo 99.1 7.2E-11 2.5E-15 74.9 3.0 40 4-48 31-74 (90)
65 1f62_A Transcription factor WS 99.0 1.4E-10 4.9E-15 66.2 3.8 45 4-49 3-49 (51)
66 1x4i_A Inhibitor of growth pro 99.0 3.6E-11 1.2E-15 73.1 1.1 40 4-48 11-53 (70)
67 1mm2_A MI2-beta; PHD, zinc fin 99.0 2.3E-10 7.8E-15 67.7 4.6 46 2-49 10-55 (61)
68 2l5u_A Chromodomain-helicase-D 99.0 1.1E-10 3.6E-15 69.2 3.0 45 2-48 12-56 (61)
69 1xwh_A Autoimmune regulator; P 99.0 1.4E-10 4.9E-15 69.8 3.4 45 2-48 9-53 (66)
70 1fp0_A KAP-1 corepressor; PHD 99.0 5.7E-10 1.9E-14 70.3 6.1 47 2-50 26-72 (88)
71 2puy_A PHD finger protein 21A; 99.0 2.3E-10 7.8E-15 67.6 3.1 45 2-48 6-50 (60)
72 2yql_A PHD finger protein 21A; 99.0 2.7E-10 9.1E-15 66.3 3.3 45 2-48 10-54 (56)
73 2lri_C Autoimmune regulator; Z 99.0 3.3E-10 1.1E-14 67.9 3.2 45 3-49 14-58 (66)
74 2lbm_A Transcriptional regulat 98.9 6.4E-10 2.2E-14 76.3 3.8 66 2-77 64-135 (142)
75 2ku3_A Bromodomain-containing 98.9 3.1E-10 1.1E-14 69.1 1.9 43 3-48 18-64 (71)
76 3pur_A Lysine-specific demethy 98.9 3.9E-10 1.3E-14 91.9 3.0 41 8-48 52-92 (528)
77 3asl_A E3 ubiquitin-protein li 98.9 1.8E-09 6E-14 65.6 4.9 38 10-48 29-67 (70)
78 2e6r_A Jumonji/ARID domain-con 98.9 1E-09 3.5E-14 70.2 3.2 45 3-48 18-64 (92)
79 2e6s_A E3 ubiquitin-protein li 98.8 4.5E-09 1.5E-13 64.9 4.8 44 4-48 29-75 (77)
80 2yt5_A Metal-response element- 98.8 1.4E-09 4.9E-14 65.3 2.2 46 3-48 8-59 (66)
81 4gne_A Histone-lysine N-methyl 98.8 4E-09 1.4E-13 69.1 4.3 44 2-49 16-61 (107)
82 2l43_A N-teminal domain from h 98.8 1.2E-09 4.1E-14 69.3 1.6 43 3-48 27-73 (88)
83 1wev_A Riken cDNA 1110020M19; 98.8 2.8E-09 9.7E-14 67.6 2.7 47 2-48 17-70 (88)
84 3shb_A E3 ubiquitin-protein li 98.7 1.7E-08 5.9E-13 62.2 4.5 37 11-48 38-75 (77)
85 3ql9_A Transcriptional regulat 98.7 3.4E-09 1.2E-13 71.5 1.2 64 2-75 58-127 (129)
86 3v43_A Histone acetyltransfera 98.6 5E-08 1.7E-12 64.7 4.9 45 3-48 63-110 (112)
87 2kwj_A Zinc finger protein DPF 98.5 4.6E-08 1.6E-12 65.0 3.3 45 3-48 60-106 (114)
88 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.4 9.6E-08 3.3E-12 65.2 1.5 36 14-49 2-43 (140)
89 2ysm_A Myeloid/lymphoid or mix 98.3 3.7E-07 1.3E-11 60.3 3.2 45 4-49 57-103 (111)
90 4bbq_A Lysine-specific demethy 98.3 2.5E-07 8.5E-12 61.7 1.7 44 6-49 67-113 (117)
91 2ysm_A Myeloid/lymphoid or mix 98.2 1.5E-06 5.2E-11 57.3 4.5 45 3-48 9-55 (111)
92 3rsn_A SET1/ASH2 histone methy 98.2 3E-06 1E-10 59.9 5.7 72 3-76 9-83 (177)
93 2kwj_A Zinc finger protein DPF 97.9 2.1E-06 7.3E-11 56.9 1.3 38 11-48 20-59 (114)
94 3v43_A Histone acetyltransfera 97.9 3.1E-06 1.1E-10 55.9 1.0 39 10-48 22-62 (112)
95 1wil_A KIAA1045 protein; ring 97.1 0.00027 9.2E-09 43.4 2.6 46 3-49 17-75 (89)
96 3a1b_A DNA (cytosine-5)-methyl 96.1 0.0022 7.6E-08 44.4 1.9 49 2-51 80-135 (159)
97 2pv0_B DNA (cytosine-5)-methyl 95.2 0.0045 1.6E-07 48.9 0.9 49 2-51 94-149 (386)
98 6rxn_A Rubredoxin; electron tr 93.9 0.053 1.8E-06 29.5 2.8 34 15-49 5-38 (46)
99 1iym_A EL5; ring-H2 finger, ub 93.0 0.067 2.3E-06 29.6 2.5 40 4-48 11-50 (55)
100 4rxn_A Rubredoxin; electron tr 93.0 0.12 3.9E-06 29.1 3.4 36 15-50 4-45 (54)
101 2l7p_A Histone-lysine N-methyl 92.3 0.076 2.6E-06 33.8 2.3 38 8-47 22-59 (100)
102 2v3b_B Rubredoxin 2, rubredoxi 92.0 0.18 6.3E-06 28.4 3.4 38 15-52 4-47 (55)
103 2kn9_A Rubredoxin; metalloprot 92.0 0.19 6.3E-06 30.7 3.7 39 14-52 27-71 (81)
104 1e8j_A Rubredoxin; iron-sulfur 92.0 0.27 9.3E-06 27.4 4.0 36 15-50 4-45 (52)
105 2d8s_A Cellular modulator of i 91.2 0.069 2.4E-06 32.6 1.2 38 9-49 26-66 (80)
106 2e61_A Zinc finger CW-type PWW 90.7 0.28 9.5E-06 29.0 3.4 34 10-46 14-49 (69)
107 1dx8_A Rubredoxin; electron tr 90.6 0.29 1E-05 29.0 3.4 37 14-50 7-49 (70)
108 1yk4_A Rubredoxin, RD; electro 90.1 0.26 9E-06 27.4 2.8 36 15-50 3-44 (52)
109 2ecm_A Ring finger and CHY zin 89.8 0.097 3.3E-06 28.9 0.8 34 10-48 17-50 (55)
110 1s24_A Rubredoxin 2; electron 89.4 0.39 1.3E-05 29.7 3.4 38 14-51 35-78 (87)
111 2ecl_A Ring-box protein 2; RNF 88.0 0.073 2.5E-06 32.4 -0.6 35 10-49 38-72 (81)
112 1jm7_A BRCA1, breast cancer ty 87.8 1.1 3.6E-05 28.5 5.0 44 4-50 24-67 (112)
113 1v87_A Deltex protein 2; ring- 87.0 0.16 5.6E-06 32.7 0.7 36 14-49 55-90 (114)
114 2lq6_A Bromodomain-containing 86.7 0.29 9.8E-06 30.3 1.6 26 4-29 20-48 (87)
115 3lrq_A E3 ubiquitin-protein li 86.5 0.36 1.2E-05 30.4 2.1 44 3-50 24-67 (100)
116 2ysl_A Tripartite motif-contai 84.6 0.55 1.9E-05 27.3 2.2 43 4-49 23-65 (73)
117 3nw0_A Non-structural maintena 84.3 0.43 1.5E-05 35.2 1.9 45 2-49 181-225 (238)
118 2ct0_A Non-SMC element 1 homol 83.9 0.54 1.8E-05 28.1 1.8 44 3-49 17-60 (74)
119 2l0b_A E3 ubiquitin-protein li 80.5 0.45 1.5E-05 29.4 0.6 36 8-49 50-85 (91)
120 2ep4_A Ring finger protein 24; 79.8 0.57 2E-05 27.4 0.9 36 8-49 25-60 (74)
121 1x4j_A Ring finger protein 38; 79.4 0.47 1.6E-05 27.9 0.5 29 16-49 40-68 (75)
122 4gne_A Histone-lysine N-methyl 79.0 1.6 5.4E-05 28.0 2.9 29 15-44 70-98 (107)
123 2ect_A Ring finger protein 126 78.6 1.6 5.3E-05 25.7 2.6 26 19-49 35-60 (78)
124 1uw0_A DNA ligase III; DNA rep 77.0 2.3 7.8E-05 27.7 3.3 56 21-81 48-103 (117)
125 2ckl_B Ubiquitin ligase protei 76.8 0.66 2.3E-05 31.9 0.6 43 3-49 56-98 (165)
126 1chc_A Equine herpes virus-1 r 75.7 0.88 3E-05 26.0 0.9 41 4-49 8-48 (68)
127 1weq_A PHD finger protein 7; s 75.2 6.4 0.00022 24.1 4.7 35 12-50 44-79 (85)
128 2yur_A Retinoblastoma-binding 74.9 1 3.5E-05 26.4 1.1 43 4-49 18-60 (74)
129 2ct2_A Tripartite motif protei 74.2 0.87 3E-05 27.4 0.6 29 19-49 36-64 (88)
130 3kxe_C Antitoxin protein PARD- 73.9 5 0.00017 24.7 4.1 29 106-134 15-43 (88)
131 2kiz_A E3 ubiquitin-protein li 73.5 0.84 2.9E-05 26.2 0.4 29 16-49 31-59 (69)
132 2ysj_A Tripartite motif-contai 73.3 0.97 3.3E-05 25.5 0.6 27 19-47 37-63 (63)
133 2djb_A Polycomb group ring fin 70.4 2.4 8.3E-05 24.5 2.0 41 4-49 18-58 (72)
134 1bor_A Transcription factor PM 70.1 5.3 0.00018 21.8 3.3 24 19-50 23-46 (56)
135 2d8t_A Dactylidin, ring finger 69.0 1.7 5.7E-05 25.2 1.0 40 4-49 18-57 (71)
136 2ckl_A Polycomb group ring fin 68.1 1.6 5.4E-05 27.6 0.8 41 4-49 18-58 (108)
137 2ecw_A Tripartite motif-contai 67.9 2 6.7E-05 25.5 1.2 45 4-49 22-67 (85)
138 2y43_A E3 ubiquitin-protein li 67.0 1.9 6.6E-05 26.7 1.1 41 4-49 25-65 (99)
139 3dpl_R Ring-box protein 1; ubi 64.8 1.2 4E-05 28.5 -0.3 30 15-49 68-97 (106)
140 1qf8_A Casein kinase II; casei 64.6 2.3 7.9E-05 30.0 1.2 31 19-49 108-142 (182)
141 2ecj_A Tripartite motif-contai 64.0 2.4 8.2E-05 23.1 1.0 27 19-47 32-58 (58)
142 2ecv_A Tripartite motif-contai 63.5 1.4 4.8E-05 26.1 -0.1 31 19-49 36-67 (85)
143 4dgl_A Casein kinase II subuni 62.5 1.9 6.6E-05 31.2 0.4 31 19-49 108-142 (215)
144 1faq_A RAF-1; transferase, ser 61.5 5.6 0.00019 21.4 2.2 19 14-32 27-45 (52)
145 2egp_A Tripartite motif-contai 60.4 3.3 0.00011 24.2 1.2 31 19-49 29-61 (79)
146 1jm7_B BARD1, BRCA1-associated 59.9 6.7 0.00023 25.0 2.7 40 4-50 25-64 (117)
147 1fr2_B Colicin E9; protein-pro 59.9 8.9 0.0003 25.5 3.3 31 107-137 36-66 (134)
148 2jb0_B Colicin E7; hydrolase/i 59.7 9 0.00031 25.4 3.3 31 107-137 33-63 (131)
149 2ecy_A TNF receptor-associated 59.6 1.3 4.6E-05 25.1 -0.7 28 18-49 31-58 (66)
150 2l9z_A PR domain zinc finger p 58.8 4.6 0.00016 20.7 1.4 18 12-29 9-26 (39)
151 4cpa_I Metallocarboxypeptidase 58.3 7.4 0.00025 19.4 2.0 29 24-52 4-32 (38)
152 1v9x_A Poly (ADP-ribose) polym 57.8 2.7 9.3E-05 27.3 0.5 47 21-79 51-97 (114)
153 4a0k_B E3 ubiquitin-protein li 57.7 2.2 7.4E-05 27.8 0.0 27 18-49 82-108 (117)
154 4ayc_A E3 ubiquitin-protein li 57.6 3.1 0.00011 27.5 0.8 40 4-49 56-95 (138)
155 2csy_A Zinc finger protein 183 56.6 2.7 9.1E-05 24.9 0.3 27 18-49 31-57 (81)
156 3fl2_A E3 ubiquitin-protein li 56.3 3.3 0.00011 26.8 0.7 41 4-49 55-95 (124)
157 3ng2_A RNF4, snurf, ring finge 56.0 1.9 6.6E-05 24.7 -0.4 31 14-49 29-59 (71)
158 1z60_A TFIIH basal transcripti 55.7 6.3 0.00021 22.3 1.7 39 4-48 21-59 (59)
159 3l11_A E3 ubiquitin-protein li 54.9 7.9 0.00027 24.5 2.4 28 19-50 32-59 (115)
160 1kbe_A Kinase suppressor of RA 53.8 16 0.00055 19.7 3.2 17 15-31 28-44 (49)
161 2ecn_A Ring finger protein 141 53.3 1.5 5.2E-05 25.2 -1.2 38 4-48 18-55 (70)
162 2ea6_A Ring finger protein 4; 52.7 2.3 7.8E-05 24.1 -0.5 31 14-49 34-64 (69)
163 3k1l_B Fancl; UBC, ring, RWD, 52.7 3.9 0.00013 32.0 0.7 15 15-29 327-343 (381)
164 2dmj_A Poly (ADP-ribose) polym 52.4 11 0.00038 23.9 2.8 43 21-74 56-98 (106)
165 2xeu_A Ring finger protein 4; 51.8 1.8 6.2E-05 24.1 -1.0 31 14-49 22-52 (64)
166 1v5n_A PDI-like hypothetical p 51.1 7.7 0.00026 23.8 1.8 23 10-32 57-79 (89)
167 2w0t_A Lethal(3)malignant brai 51.1 9.9 0.00034 20.0 1.9 15 9-23 1-15 (43)
168 1e4u_A Transcriptional repress 50.0 4 0.00014 24.3 0.3 27 19-49 32-58 (78)
169 2con_A RUH-035 protein, NIN on 49.0 24 0.00083 21.1 3.7 27 12-50 13-39 (79)
170 1vyx_A ORF K3, K3RING; zinc-bi 48.7 0.91 3.1E-05 25.8 -2.6 42 4-48 9-54 (60)
171 2ytg_A ZFP-95, zinc finger pro 48.4 16 0.00054 18.1 2.6 35 13-47 11-46 (46)
172 2a3d_A Protein (de novo three- 48.3 34 0.0012 19.0 5.2 43 106-148 11-55 (73)
173 2k1p_A Zinc finger RAN-binding 47.9 7.8 0.00027 19.0 1.2 10 39-48 4-13 (33)
174 2ibf_B Invasin IPAA, 70 kDa an 47.2 14 0.00049 16.5 1.8 21 142-162 1-21 (26)
175 1z6u_A NP95-like ring finger p 43.7 6.9 0.00024 26.4 0.8 41 4-49 81-121 (150)
176 3ztg_A E3 ubiquitin-protein li 43.4 3.7 0.00013 24.9 -0.6 30 18-50 30-59 (92)
177 2lk0_A RNA-binding protein 5; 42.8 5.2 0.00018 19.5 0.0 10 39-48 3-12 (32)
178 1g25_A CDK-activating kinase a 42.0 7.6 0.00026 21.7 0.7 28 18-49 24-51 (65)
179 7cei_B Protein (colicin E7 imm 41.4 24 0.00082 25.0 3.2 32 103-135 105-136 (206)
180 3ga8_A HTH-type transcriptiona 40.9 17 0.00059 21.4 2.2 32 41-80 36-67 (78)
181 2enz_A NPKC-theta, protein kin 40.4 18 0.00062 20.4 2.2 19 13-31 39-57 (65)
182 1vd4_A Transcription initiatio 40.3 10 0.00035 20.8 1.0 35 13-49 13-47 (62)
183 2m0d_A Zinc finger and BTB dom 40.0 15 0.00051 15.7 1.5 12 15-26 4-15 (30)
184 2jrp_A Putative cytoplasmic pr 39.7 13 0.00046 22.4 1.5 45 4-48 8-58 (81)
185 2epr_A POZ-, at HOOK-, and zin 39.4 17 0.00059 18.3 1.9 37 12-48 10-47 (48)
186 2dlo_A Thyroid receptor-intera 39.1 14 0.00049 21.6 1.6 44 2-48 5-48 (81)
187 1ptq_A Protein kinase C delta 39.0 11 0.00039 19.9 1.0 19 13-31 27-45 (50)
188 2ctu_A Zinc finger protein 483 38.0 34 0.0012 18.6 3.2 32 12-49 16-47 (73)
189 2kdx_A HYPA, hydrogenase/ureas 37.8 41 0.0014 21.5 3.9 27 14-51 73-100 (119)
190 3ro3_B Minsc, peptide of prote 37.1 20 0.00068 15.7 1.4 15 118-132 7-21 (22)
191 2enn_A NPKC-theta, protein kin 35.9 22 0.00076 20.9 2.1 19 13-31 50-68 (77)
192 3b4s_A Protein LUXT; APC91483. 35.3 53 0.0018 20.3 3.8 45 117-162 31-75 (94)
193 2kvh_A Zinc finger and BTB dom 35.2 16 0.00055 15.4 1.1 11 15-25 4-14 (27)
194 1ard_A Yeast transcription fac 35.2 13 0.00046 15.8 0.8 9 16-24 4-12 (29)
195 1t1h_A Gspef-atpub14, armadill 34.7 12 0.00042 21.6 0.8 27 19-49 25-51 (78)
196 2dmi_A Teashirt homolog 3; zin 34.3 39 0.0013 20.6 3.3 8 41-48 80-87 (115)
197 3uej_A NPKC-delta, protein kin 34.3 19 0.00066 20.3 1.6 19 13-31 36-54 (65)
198 1rik_A E6APC1 peptide; E6-bind 34.2 17 0.00057 15.5 1.1 11 15-25 3-13 (29)
199 2db6_A SH3 and cysteine rich d 33.6 20 0.00068 20.9 1.6 19 13-31 44-62 (74)
200 2em0_A Zinc finger protein 224 33.6 13 0.00045 18.5 0.7 13 14-26 12-24 (46)
201 2eli_A Protein kinase C alpha 33.3 27 0.00091 21.0 2.2 19 13-31 44-62 (85)
202 2y1n_A E3 ubiquitin-protein li 32.9 9.4 0.00032 30.2 0.1 42 3-49 334-375 (389)
203 1rmd_A RAG1; V(D)J recombinati 32.8 11 0.00036 23.9 0.3 41 4-49 26-66 (116)
204 2elm_A Zinc finger protein 406 32.5 25 0.00085 16.4 1.7 11 14-24 9-19 (37)
205 2kvf_A Zinc finger and BTB dom 32.2 23 0.00078 14.9 1.4 11 15-25 4-14 (28)
206 2gmg_A Hypothetical protein PF 32.0 49 0.0017 20.9 3.3 25 16-50 69-93 (105)
207 2yuu_A NPKC-delta, protein kin 31.9 26 0.00087 20.9 1.9 19 13-31 44-62 (83)
208 1srk_A Zinc finger protein ZFP 31.5 25 0.00086 15.9 1.6 10 15-24 8-17 (35)
209 2ct7_A Ring finger protein 31; 31.4 31 0.0011 20.7 2.3 16 14-29 43-58 (86)
210 3hct_A TNF receptor-associated 31.0 10 0.00035 24.2 -0.0 41 4-49 21-61 (118)
211 2elq_A Zinc finger protein 406 30.9 25 0.00084 16.1 1.5 10 15-24 10-19 (36)
212 1wim_A KIAA0161 protein; ring 30.8 12 0.0004 22.8 0.2 46 4-49 8-60 (94)
213 1znf_A 31ST zinc finger from X 30.8 17 0.00057 15.2 0.8 8 17-24 4-11 (27)
214 1paa_A Yeast transcription fac 30.6 18 0.0006 15.6 0.8 9 16-24 4-12 (30)
215 2fnf_X Putative RAS effector N 30.5 30 0.001 20.1 2.0 19 13-31 48-66 (72)
216 2kvg_A Zinc finger and BTB dom 30.4 17 0.00059 15.4 0.8 11 15-25 4-14 (27)
217 2els_A Zinc finger protein 406 30.0 31 0.0011 15.7 1.8 7 42-48 10-16 (36)
218 2kw0_A CCMH protein; oxidoredu 29.9 29 0.00099 21.4 1.9 13 40-52 22-34 (90)
219 4ic3_A E3 ubiquitin-protein li 29.5 27 0.00093 20.1 1.7 37 3-49 26-63 (74)
220 2gpv_G Nuclear receptor corepr 29.4 43 0.0015 15.1 1.9 20 103-122 2-21 (26)
221 1zbd_B Rabphilin-3A; G protein 29.3 22 0.00074 23.6 1.4 34 14-48 72-105 (134)
222 1x63_A Skeletal muscle LIM-pro 29.3 29 0.00098 20.1 1.9 23 2-25 4-26 (82)
223 1pp5_A Microcin J25; lariat, p 28.8 11 0.00037 16.9 -0.1 15 92-106 5-19 (26)
224 2pk7_A Uncharacterized protein 28.5 26 0.00088 20.4 1.4 13 14-26 26-38 (69)
225 2zet_C Melanophilin; complex, 28.5 19 0.00066 24.4 1.0 31 14-48 85-115 (153)
226 2lvu_A Zinc finger and BTB dom 34.4 12 0.00042 15.7 0.0 9 16-24 4-12 (26)
227 1y8f_A UNC-13 homolog A, MUNC1 28.1 24 0.00083 20.0 1.3 19 13-31 40-58 (66)
228 1rfh_A RAS association (ralgds 28.0 22 0.00076 19.7 1.1 19 13-31 35-53 (59)
229 3ray_A PR domain-containing pr 28.0 23 0.00079 25.9 1.4 24 5-29 22-45 (237)
230 2m0f_A Zinc finger and BTB dom 27.8 30 0.001 14.4 1.4 9 16-24 4-12 (29)
231 2elv_A Zinc finger protein 406 27.8 42 0.0014 15.2 2.1 8 41-48 9-16 (36)
232 1weo_A Cellulose synthase, cat 27.7 11 0.00039 23.2 -0.2 43 2-48 17-65 (93)
233 3vhs_A ATPase wrnip1; zinc fin 27.6 30 0.001 15.9 1.2 9 13-21 5-13 (29)
234 2elp_A Zinc finger protein 406 27.4 32 0.0011 15.8 1.6 10 15-24 10-19 (37)
235 2elt_A Zinc finger protein 406 27.4 31 0.001 15.6 1.5 7 42-48 10-16 (36)
236 2hl7_A Cytochrome C-type bioge 26.6 35 0.0012 20.7 1.8 12 41-52 26-37 (84)
237 2ctd_A Zinc finger protein 512 26.5 13 0.00044 22.6 -0.1 35 14-49 34-70 (96)
238 4ap4_A E3 ubiquitin ligase RNF 26.4 12 0.00042 23.9 -0.3 29 16-49 28-56 (133)
239 1xn7_A Hypothetical protein YH 26.4 1E+02 0.0035 18.0 4.1 21 104-124 2-22 (78)
240 2lvt_A Zinc finger and BTB dom 32.3 14 0.00048 15.9 0.0 9 16-24 4-12 (29)
241 2elx_A Zinc finger protein 406 26.1 35 0.0012 15.3 1.5 7 42-48 8-14 (35)
242 2js4_A UPF0434 protein BB2007; 25.5 24 0.00084 20.5 1.0 14 14-27 26-39 (70)
243 2jny_A Uncharacterized BCR; st 25.5 25 0.00084 20.3 1.0 13 14-26 28-40 (67)
244 4b6d_A RAC GTPase-activating p 25.2 49 0.0017 18.5 2.2 20 12-31 33-52 (61)
245 2hf1_A Tetraacyldisaccharide-1 25.0 25 0.00087 20.3 1.0 13 14-26 26-38 (68)
246 3od8_A Poly [ADP-ribose] polym 25.0 12 0.00042 24.2 -0.5 43 21-74 69-111 (116)
247 3gj3_B Nuclear pore complex pr 24.9 17 0.00057 17.9 0.1 11 38-48 4-14 (33)
248 2jr6_A UPF0434 protein NMA0874 24.8 26 0.00088 20.3 1.0 13 14-26 26-38 (68)
249 3a43_A HYPD, hydrogenase nicke 24.8 64 0.0022 21.3 3.1 14 14-27 70-83 (139)
250 1klr_A Zinc finger Y-chromosom 24.7 22 0.00074 15.1 0.5 8 17-24 5-12 (30)
251 1yop_A KTI11P; zinc finger, me 24.5 41 0.0014 20.3 1.9 18 11-28 42-59 (83)
252 2el5_A Zinc finger protein 268 24.5 36 0.0012 16.2 1.5 13 14-26 10-22 (42)
253 2eof_A Zinc finger protein 268 24.4 39 0.0013 16.2 1.6 13 14-26 12-24 (44)
254 3mjh_B Early endosome antigen 23.8 14 0.0005 18.3 -0.2 8 41-48 5-12 (34)
255 2lvr_A Zinc finger and BTB dom 29.1 17 0.00059 15.6 0.0 10 16-25 5-14 (30)
256 2elr_A Zinc finger protein 406 23.0 29 0.00098 15.8 0.8 13 14-26 9-21 (36)
257 2a20_A Regulating synaptic mem 22.6 19 0.00065 20.3 0.1 45 3-48 14-58 (62)
258 2m0e_A Zinc finger and BTB dom 22.5 28 0.00095 14.5 0.7 9 16-24 4-12 (29)
259 2ept_A Zinc finger protein 32; 22.4 46 0.0016 15.7 1.6 12 14-25 10-21 (41)
260 2en2_A B-cell lymphoma 6 prote 22.2 45 0.0015 15.8 1.6 11 15-25 12-22 (42)
261 2elo_A Zinc finger protein 406 21.7 27 0.00094 16.0 0.6 7 42-48 10-16 (37)
262 1njq_A Superman protein; zinc- 21.6 48 0.0016 15.4 1.6 7 42-48 7-13 (39)
263 2ebr_A Nuclear pore complex pr 21.5 54 0.0018 17.5 1.8 12 37-48 7-18 (47)
264 2emi_A Zinc finger protein 484 21.3 47 0.0016 16.2 1.6 13 14-26 12-24 (46)
265 2c6a_A Ubiquitin-protein ligas 21.3 24 0.00083 18.8 0.3 10 39-48 11-20 (46)
266 1p7a_A BF3, BKLF, kruppel-like 20.9 31 0.0011 15.8 0.7 8 41-48 11-18 (37)
267 4h22_A Leucine-rich repeat fli 20.9 32 0.0011 21.7 0.9 18 130-147 14-31 (103)
268 3s93_A Tudor domain-containing 20.8 36 0.0012 21.4 1.1 58 63-132 7-65 (102)
269 2epc_A Zinc finger protein 32; 20.7 50 0.0017 15.5 1.6 10 15-24 12-21 (42)
270 2xzl_A ATP-dependent helicase 20.7 40 0.0014 29.2 1.7 19 10-28 21-39 (802)
271 2eow_A Zinc finger protein 347 20.5 53 0.0018 15.9 1.7 13 14-26 12-24 (46)
272 2jne_A Hypothetical protein YF 20.3 21 0.00073 22.3 -0.0 35 14-48 48-88 (101)
273 2e2z_A TIM15; protein import, 20.2 32 0.0011 21.6 0.8 21 6-27 30-50 (100)
274 2epv_A Zinc finger protein 268 20.1 51 0.0018 15.9 1.5 10 15-24 13-22 (44)
275 1nj3_A NPL4; NZF domain, rubre 20.1 29 0.001 16.4 0.5 9 40-48 5-13 (31)
276 2jr7_A DPH3 homolog; DESR1, CS 20.1 56 0.0019 20.0 1.9 17 12-28 43-59 (89)
277 2ep3_A Zinc finger protein 484 20.0 51 0.0018 16.0 1.5 15 14-28 12-26 (46)
No 1
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=100.00 E-value=5.1e-50 Score=289.54 Aligned_cols=162 Identities=57% Similarity=1.143 Sum_probs=148.3
Q ss_pred ccccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCCCCcccccccCCChhHHHHHHHHHHHHHhCcCCC
Q psy5115 3 FHTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNSSSNLANMKNLTPRDFESLRKLMKQIQAHKSAW 82 (171)
Q Consensus 3 ~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~~~~~ 82 (171)
.|.+++|++|+||+||.|++|||..|+|++....+..+.|.||.|...........++++.+++.|..+|+.|.+++.++
T Consensus 12 ~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~l~~~~~~~l~~il~~l~~~~~~~ 91 (174)
T 2ri7_A 12 ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDAMTVLTPLTEKDYEGLKRVLRSLQAHKMAW 91 (174)
T ss_dssp TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHHHHHTTTSBCCHHHHHHHHHHHHHHHTSGGGT
T ss_pred eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchhccccccccCCHHHHHHHHHHHHHHHhhhhhh
Confidence 47888888999999999999999999999876666678999999985433333446799999999999999999999999
Q ss_pred CCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHH
Q psy5115 83 PFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVKI 162 (171)
Q Consensus 83 ~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yn~~~s~~~~~a~~l~~~f~~~~~~ 162 (171)
+|..||++..+|+|+++|++||||++|++||++|.|.|+++|.+||+|||+||.+||+++|.++++|..|++.|++.+++
T Consensus 92 ~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~ 171 (174)
T 2ri7_A 92 PFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKG 171 (174)
T ss_dssp TTSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTT
T ss_pred hhhcCCCcccCCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred HH
Q psy5115 163 LR 164 (171)
Q Consensus 163 ~~ 164 (171)
++
T Consensus 172 ~~ 173 (174)
T 2ri7_A 172 FK 173 (174)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 2
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=100.00 E-value=9.8e-43 Score=253.33 Aligned_cols=159 Identities=30% Similarity=0.570 Sum_probs=139.3
Q ss_pred CccccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCCCCcc-----------------cccccCCChhH
Q psy5115 2 KFHTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNSSSN-----------------LANMKNLTPRD 64 (171)
Q Consensus 2 ~~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~~~~~-----------------~~~~~~l~~~~ 64 (171)
.+|.+|.+++. +++||+|+++||..|+++... ..+.+.|+||.|+..... ......+++.+
T Consensus 5 ~~C~~C~~~g~-ll~Cd~C~~~~H~~C~~p~l~-~~p~~~W~C~~C~~~~~~~~e~dc~~~~~~s~~~~~~~~~~l~~~~ 82 (184)
T 3o36_A 5 DWCAVCQNGGE-LLCCEKCPKVFHLSCHVPTLT-NFPSGEWICTFCRDLSKPEVEYDCDAPSHNSEKKKTEGLVKLTPID 82 (184)
T ss_dssp SSCTTTCCCSS-CEECSSSSCEECTTTSSSCCS-SCCSSCCCCTTTSCSSSCSSCCGGGCCSSCTTTSCCTTCCCCCHHH
T ss_pred CccccCCCCCe-eeecCCCCcccCccccCCCCC-CCCCCCEECccccCccccccccccccccccccccccccccccCHHH
Confidence 47999987765 999999999999999965433 234568999999943210 01123588999
Q ss_pred HHHHHHHHHHHHhCcCCCCCccCCCCCCCCccccccCCCCCHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHhhhCCCC
Q psy5115 65 FESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQ--QRYKKLSEFIGDMTKIFDNCRYYNPRE 142 (171)
Q Consensus 65 ~~~~~~~l~~l~~~~~~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~--~~Y~s~~~f~~Dv~li~~Na~~yn~~~ 142 (171)
++.|..+|..|..++.+++|..||+.. +|+|+++|++||||++|++||++ |.|.++++|.+||+|||+||.+||+++
T Consensus 83 ~~~c~~il~~l~~~~~s~~F~~Pv~~~-~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~ 161 (184)
T 3o36_A 83 KRKCERLLLFLYCHEMSLAFQDPVPLT-VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPD 161 (184)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHSCCCTT-STTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhchhhhhhccccccC-CCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 999999999999999999999999865 89999999999999999999998 799999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q psy5115 143 SPFFKHAHQLEMFFVQKVKIL 163 (171)
Q Consensus 143 s~~~~~a~~l~~~f~~~~~~~ 163 (171)
|.++++|..|++.|++.++++
T Consensus 162 s~v~~~a~~L~~~f~~~~~~~ 182 (184)
T 3o36_A 162 SEVANAGIKLENYFEELLKNL 182 (184)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999876
No 3
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=100.00 E-value=1.4e-41 Score=251.29 Aligned_cols=161 Identities=24% Similarity=0.545 Sum_probs=140.4
Q ss_pred CccccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCCCCc--------------ccccccCCChhHHHH
Q psy5115 2 KFHTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNSSS--------------NLANMKNLTPRDFES 67 (171)
Q Consensus 2 ~~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~~~~--------------~~~~~~~l~~~~~~~ 67 (171)
.+|..|.+++. ||+||+|++|||..|+++... ..+.+.|+||.|..... .......|++.+++.
T Consensus 8 ~~C~~C~~~g~-ll~Cd~C~~~~H~~Cl~p~l~-~~p~~~W~C~~C~~~~~~~~~~~c~~~~~s~k~~~~~~ls~~~~~~ 85 (207)
T 3u5n_A 8 DWCAVCQNGGD-LLCCEKCPKVFHLTCHVPTLL-SFPSGDWICTFCRDIGKPEVEYDCDNLQHSKKGKTAQGLSPVDQRK 85 (207)
T ss_dssp SSBTTTCCCEE-EEECSSSSCEECTTTSSSCCS-SCCSSCCCCTTTSCSSSCSSCCSCC----------CCSSCHHHHHH
T ss_pred CCCCCCCCCCc-eEEcCCCCCccCCccCCCCCC-CCCCCCEEeCceeCccccccccccccccchhhhhhhhcccHHHHHH
Confidence 46889987654 999999999999999965332 33567899999994321 112235789999999
Q ss_pred HHHHHHHHHhCcCCCCCccCCCCCCCCccccccCCCCCHHHHHHHHhc---CCCCCHHHHHHHHHHHHHHHhhhCC----
Q psy5115 68 LRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQ---QRYKKLSEFIGDMTKIFDNCRYYNP---- 140 (171)
Q Consensus 68 ~~~~l~~l~~~~~~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~---~~Y~s~~~f~~Dv~li~~Na~~yn~---- 140 (171)
|..+|..|.+++.+++|..||+. .+|+|+++|++||||++|++||++ |.|.++++|.+||+|||+||++||+
T Consensus 86 c~~il~~l~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~ 164 (207)
T 3u5n_A 86 CERLLLYLYCHELSIEFQEPVPA-SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEMMKV 164 (207)
T ss_dssp HHHHHHHHHTSTTCGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccchhhhhccCCh-hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHHHHHHHCCCcch
Confidence 99999999999999999999987 699999999999999999999997 7999999999999999999999999
Q ss_pred -------------CCCHHHHHHHHHHHHHHHHHHHHHH
Q psy5115 141 -------------RESPFFKHAHQLEMFFVQKVKILRE 165 (171)
Q Consensus 141 -------------~~s~~~~~a~~l~~~f~~~~~~~~~ 165 (171)
++|.++++|..|+..|++.|+++..
T Consensus 165 v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p 202 (207)
T 3u5n_A 165 VQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYS 202 (207)
T ss_dssp HC----------CCCCHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999998754
No 4
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=100.00 E-value=4.4e-41 Score=244.87 Aligned_cols=158 Identities=15% Similarity=0.310 Sum_probs=136.5
Q ss_pred CccccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCCCCc--------------ccccccCCChhHHHH
Q psy5115 2 KFHTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNSSS--------------NLANMKNLTPRDFES 67 (171)
Q Consensus 2 ~~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~~~~--------------~~~~~~~l~~~~~~~ 67 (171)
.+|.+|.+++. +++||+|+++||..|+.+... ..+.+.|.|+.|..... ......+|++.+++.
T Consensus 3 ~~C~~C~~~g~-ll~Cd~C~~~~H~~Cl~p~l~-~~p~g~W~C~~C~~~~~~~~~~g~~s~~~~~~~~~~~~m~~~~~~~ 80 (189)
T 2ro1_A 3 TICRVCQKPGD-LVMCNQCEFCFHLDCHLPALQ-DVPGEEWSCSLCHVLPDLKEEDGSLSLDGADSTGVVAKLSPANQRK 80 (189)
T ss_dssp CCBTTTCCCSS-CCCCTTTCCBCCSTTSTTCCS-SCCCTTCCTTTTSCSCCTTCSCSSCCSSSSSSSCSSCSSCHHHHHH
T ss_pred CcCccCCCCCc-eeECCCCCchhccccCCCCcc-cCCCCCCCCcCccCCCCCCccccccccccccccccccCCCHHHHHH
Confidence 47999998765 999999999999999954322 23467899999994321 011234689999999
Q ss_pred HHHHHHHHHhCcCCCCCccCCCCCCCCccccccC--CCCCHHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHhhhCCCC
Q psy5115 68 LRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVK--EPMDLKTIELRIAQQ---RYKKLSEFIGDMTKIFDNCRYYNPRE 142 (171)
Q Consensus 68 ~~~~l~~l~~~~~~~~F~~pv~~~~~p~Y~~~i~--~Pmdl~~I~~kl~~~---~Y~s~~~f~~Dv~li~~Na~~yn~~~ 142 (171)
|..+|..|..++.+++|.+||+ |+||.+|+ +||||+||++||++| .|.++++|.+||+|||+||++|| ++
T Consensus 81 c~~iL~~l~~~~~s~pF~~pV~----~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Lif~N~~~yN-~~ 155 (189)
T 2ro1_A 81 CERVLLALFCHEPCRPLHQLAT----DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLT-ED 155 (189)
T ss_dssp HHHHHHHHHHSTTHHHHHSCSC----CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHHHHHHHHHC-CS
T ss_pred HHHHHhhcccCccchhhcCCCC----hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHC-CC
Confidence 9999999999999999999997 67999998 899999999999999 99999999999999999999999 58
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Q psy5115 143 SPFFKHAHQLEMFFVQKVKILREK 166 (171)
Q Consensus 143 s~~~~~a~~l~~~f~~~~~~~~~~ 166 (171)
+.++.+|..|++.|++.|+++...
T Consensus 156 s~~~~~a~~L~~~Fe~~~~~~~~~ 179 (189)
T 2ro1_A 156 KADVQSIIGLQRFFETRMNEAFGD 179 (189)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCc
Confidence 888999999999999999988643
No 5
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=100.00 E-value=2.6e-36 Score=217.21 Aligned_cols=150 Identities=17% Similarity=0.376 Sum_probs=126.7
Q ss_pred ccccccCCCce---eEecCCCCceecccccCccccCcC------CCCCCCCCccCCCCcccccccCCChhHHHHHHHHHH
Q psy5115 3 FHTLAVIEPKF---YICCDTCQDWFHGRCVGILQSEAD------NIDEYICPNCNNSSSNLANMKNLTPRDFESLRKLMK 73 (171)
Q Consensus 3 ~~~~~~~~~~~---~i~C~~C~r~~H~~C~~~~~~~~~------~~~~~~Cp~C~~~~~~~~~~~~l~~~~~~~~~~~l~ 73 (171)
.|.++|+++.+ ||+||.|.+|||+.|+|++....+ +...|.||.|........+ ..++.++.+.+..||.
T Consensus 7 iC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~~~~-~~~~~el~~~l~~vl~ 85 (183)
T 3lqh_A 7 LCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPAEWR-LALEKELQISLKQVLT 85 (183)
T ss_dssp TTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSCHHH-HHHHHHHHHHHHHHHH
T ss_pred CCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCHHHH-HHHHHHHHHHHHHHHH
Confidence 48999998764 999999999999999999763211 1237999999865443322 2456677788999999
Q ss_pred HHHhCcCCCCCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q psy5115 74 QIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDNCRYYNPRESPFFKHAHQLE 153 (171)
Q Consensus 74 ~l~~~~~~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yn~~~s~~~~~a~~l~ 153 (171)
.|..++.++||... .++.||||++|++||++|.|.|+.+|+.||.+||+||..||++++++.+++..|+
T Consensus 86 ~L~~~~~s~~~~~y-----------~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~~~~~e~~~ag~~l~ 154 (183)
T 3lqh_A 86 ALLNSRTTSHLLRY-----------RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSDGGQPEIKKANSMVK 154 (183)
T ss_dssp HHHTCHHHHHHHTC-----------CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHhccccHhhhhh-----------hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhccCCChhhhhhhhHHH
Confidence 99999999999873 2599999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy5115 154 MFFVQKVKILR 164 (171)
Q Consensus 154 ~~f~~~~~~~~ 164 (171)
..|++.++++-
T Consensus 155 ~~f~~~l~~vf 165 (183)
T 3lqh_A 155 SFFIRQMERVF 165 (183)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHC
Confidence 99999999864
No 6
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=100.00 E-value=3.6e-33 Score=188.89 Aligned_cols=110 Identities=28% Similarity=0.571 Sum_probs=105.1
Q ss_pred cccCCChhHHHHHHHHHHHHHhCcCCCCCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy5115 56 NMKNLTPRDFESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDNC 135 (171)
Q Consensus 56 ~~~~l~~~~~~~~~~~l~~l~~~~~~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na 135 (171)
+.++.++.+++.|..+++.|.+++.+++|..||++..+|+|+++|++||||++|++||++|.|.++++|.+||+|||+||
T Consensus 6 k~~~~~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 85 (117)
T 3g0l_A 6 KPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNC 85 (117)
T ss_dssp CCCCCCTTHHHHHHHHHHHHHTSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHhCCCchhhcCcCChhhcCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy5115 136 RYYNPRESPFFKHAHQLEMFFVQKVKILRE 165 (171)
Q Consensus 136 ~~yn~~~s~~~~~a~~l~~~f~~~~~~~~~ 165 (171)
..||+++|.++.+|..|++.|++.|+++-.
T Consensus 86 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 86 ETFNEDDSDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp HHHSCSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999998753
No 7
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=1.5e-32 Score=186.56 Aligned_cols=109 Identities=28% Similarity=0.466 Sum_probs=104.2
Q ss_pred hhHHHHHHHHHHHHHhCcCCCCCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC
Q psy5115 62 PRDFESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDNCRYYNPR 141 (171)
Q Consensus 62 ~~~~~~~~~~l~~l~~~~~~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yn~~ 141 (171)
......|..+|+.|.+++.+++|..||++..+|+|+++|++||||++|++||++|.|.++++|.+||+|||+||.+||++
T Consensus 6 ~pl~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 85 (121)
T 2d9e_A 6 SGFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAK 85 (121)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCT
T ss_pred cHHHHHHHHHHHHHHcCCccHhhCCcCCccccCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy5115 142 ESPFFKHAHQLEMFFVQKVKILREKLVEL 170 (171)
Q Consensus 142 ~s~~~~~a~~l~~~f~~~~~~~~~~~~~~ 170 (171)
+|.++++|..|++.|++.++++++.+++.
T Consensus 86 ~s~~~~~A~~L~~~~~~~l~~~~~~~~~~ 114 (121)
T 2d9e_A 86 DTIFYRAAVRLREQGGAVLRQARRQAEKM 114 (121)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999988764
No 8
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=100.00 E-value=2.2e-32 Score=183.62 Aligned_cols=103 Identities=43% Similarity=0.797 Sum_probs=99.1
Q ss_pred ChhHHHHHHHHHHHHHhCcCCCCCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q psy5115 61 TPRDFESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDNCRYYNP 140 (171)
Q Consensus 61 ~~~~~~~~~~~l~~l~~~~~~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yn~ 140 (171)
+.+....|..+++.|.+++.+++|..||++..+|+|+++|++||||+||++||++|.|.++++|.+||+|||+||..||+
T Consensus 5 ~~~l~~~~~~il~~l~~~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~ 84 (112)
T 3d7c_A 5 PDQLYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNP 84 (112)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhcCCCCcccccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHCC
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q psy5115 141 RESPFFKHAHQLEMFFVQKVKIL 163 (171)
Q Consensus 141 ~~s~~~~~a~~l~~~f~~~~~~~ 163 (171)
++|.++.+|..|++.|++.++++
T Consensus 85 ~~s~~~~~A~~L~~~f~~~~~~~ 107 (112)
T 3d7c_A 85 PDSEYCRCASALEKFFYFKLKEG 107 (112)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999875
No 9
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.98 E-value=7.3e-32 Score=183.85 Aligned_cols=109 Identities=27% Similarity=0.465 Sum_probs=103.0
Q ss_pred ChhHHHHHHHHHHHHHhCcCCCCCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q psy5115 61 TPRDFESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDNCRYYNP 140 (171)
Q Consensus 61 ~~~~~~~~~~~l~~l~~~~~~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yn~ 140 (171)
...+++.|..+|+.|..++.+++|..||++..+|+|+++|++||||++|++||++|.|.++++|..||+|||+||..||+
T Consensus 8 ~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 87 (123)
T 3q2e_A 8 ESNWKKQCKELVNLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYTP 87 (123)
T ss_dssp --CHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhCCCcHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5115 141 R-ESPFFKHAHQLEMFFVQKVKILREKLVE 169 (171)
Q Consensus 141 ~-~s~~~~~a~~l~~~f~~~~~~~~~~~~~ 169 (171)
+ +|.++.+|..|++.|++.++++.+++.+
T Consensus 88 ~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~ 117 (123)
T 3q2e_A 88 NKRSKIYSMTLRLSALFEEKMKKISSDFKI 117 (123)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 8999999999999999999999988765
No 10
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.97 E-value=1.3e-31 Score=180.65 Aligned_cols=101 Identities=27% Similarity=0.398 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHHHHhCcCCCCCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q psy5115 63 RDFESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDNCRYYNPRE 142 (171)
Q Consensus 63 ~~~~~~~~~l~~l~~~~~~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yn~~~ 142 (171)
.....|..+++.|.+++.+++|..||++..+|+|+++|++||||+||++||++|.|.|+++|.+||+|||.||.+||+++
T Consensus 8 ~l~~~l~~il~~L~~~~~~~~F~~PVd~~~~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~ 87 (117)
T 2i7k_A 8 PLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPE 87 (117)
T ss_dssp HHHHHHHHHHHHHHTSSGGGTSSSCCCTTTSSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHHHHhCcccHHhcCCCCccccCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q psy5115 143 SPFFKHAHQLEMFFVQKVKIL 163 (171)
Q Consensus 143 s~~~~~a~~l~~~f~~~~~~~ 163 (171)
|.++++|..|++.|++.++..
T Consensus 88 s~i~~~A~~L~~~f~~~~~~~ 108 (117)
T 2i7k_A 88 TIYYKAAKKLLHSGMKILSQE 108 (117)
T ss_dssp SSHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998864
No 11
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.97 E-value=5.7e-32 Score=183.75 Aligned_cols=102 Identities=40% Similarity=0.883 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHHHHhCcCCCCCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q psy5115 63 RDFESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDNCRYYNPRE 142 (171)
Q Consensus 63 ~~~~~~~~~l~~l~~~~~~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yn~~~ 142 (171)
.....|..+|+.|.+++.+++|..||++..+|+|+++|++||||++|++||++|.|.|+++|.+||+|||+||.+||+++
T Consensus 13 ~~~~~~~~il~~l~~~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 92 (121)
T 1e6i_A 13 PHDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGEN 92 (121)
T ss_dssp TTHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHcCCCchhhCCCCChhhCcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q psy5115 143 SPFFKHAHQLEMFFVQKVKILR 164 (171)
Q Consensus 143 s~~~~~a~~l~~~f~~~~~~~~ 164 (171)
|.++++|..|++.|++.+++++
T Consensus 93 s~i~~~A~~L~~~f~~~~~~~p 114 (121)
T 1e6i_A 93 TSYYKYANRLEKFFNNKVKEIP 114 (121)
T ss_dssp SHHHHHHHHHHHHHHHHHHTSG
T ss_pred CHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999998874
No 12
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.97 E-value=3.7e-32 Score=191.72 Aligned_cols=114 Identities=34% Similarity=0.549 Sum_probs=106.1
Q ss_pred ccCCChhHHHHHHHHHHHHHhCcCCCCCccCCCCC--CCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy5115 57 MKNLTPRDFESLRKLMKQIQAHKSAWPFMEPVDPH--EAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDN 134 (171)
Q Consensus 57 ~~~l~~~~~~~~~~~l~~l~~~~~~~~F~~pv~~~--~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~N 134 (171)
.+.++.+....+..+|+.|.+++.+++|..||++. .+|+|+++|++||||+||++||++|.|.++++|..||+|||.|
T Consensus 26 ~~r~t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N 105 (154)
T 4alg_A 26 PGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTN 105 (154)
T ss_dssp CCCCBHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 34677888888888999999999999999999988 6999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy5115 135 CRYYNPRESPFFKHAHQLEMFFVQKVKILREKLVEL 170 (171)
Q Consensus 135 a~~yn~~~s~~~~~a~~l~~~f~~~~~~~~~~~~~~ 170 (171)
|.+||+++|.++.+|..|++.|++.+++++....++
T Consensus 106 a~~YN~~~s~i~~~A~~L~~~f~~~~~~l~~~~~e~ 141 (154)
T 4alg_A 106 CYIYNKPTDDIVLMAQTLEKIFLQKVASMPQEEQEL 141 (154)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHTTSCSSCCBC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCchhccc
Confidence 999999999999999999999999999887665543
No 13
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.97 E-value=1.1e-31 Score=183.63 Aligned_cols=108 Identities=37% Similarity=0.620 Sum_probs=101.6
Q ss_pred ccCCChhHHHHHHHHHHHHHhCcCCCCCccCCCCC--CCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy5115 57 MKNLTPRDFESLRKLMKQIQAHKSAWPFMEPVDPH--EAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDN 134 (171)
Q Consensus 57 ~~~l~~~~~~~~~~~l~~l~~~~~~~~F~~pv~~~--~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~N 134 (171)
.+.++.+....|..+|+.|.+++.+++|..||++. .+|+|+++|++||||++|++||++|.|.++++|.+||+|||+|
T Consensus 15 ~~r~~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~N 94 (127)
T 2oss_A 15 PKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTN 94 (127)
T ss_dssp CCCCCHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 34677788888888999999999999999999975 7999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy5115 135 CRYYNPRESPFFKHAHQLEMFFVQKVKILR 164 (171)
Q Consensus 135 a~~yn~~~s~~~~~a~~l~~~f~~~~~~~~ 164 (171)
|.+||+++|.++.+|..|++.|++.+++++
T Consensus 95 a~~yN~~~s~i~~~A~~L~~~f~~~~~~lp 124 (127)
T 2oss_A 95 CYIYNKPGDDIVLMAEALEKLFLQKINELP 124 (127)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999998764
No 14
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.97 E-value=2.8e-31 Score=183.80 Aligned_cols=108 Identities=33% Similarity=0.523 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHHHhCcCCCCCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q psy5115 63 RDFESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDNCRYYNPRE 142 (171)
Q Consensus 63 ~~~~~~~~~l~~l~~~~~~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yn~~~ 142 (171)
.....|..+|+.|.+++.+++|..||++..+|+|+++|++||||++|++||++|.|.++++|.+||+|||+||..||+++
T Consensus 13 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 92 (135)
T 3rcw_A 13 PLTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARD 92 (135)
T ss_dssp HHHHHHHHHHHHHHHTCTTCSSSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHhCCcchhhcCCCChhhcCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy5115 143 SPFFKHAHQLEMFFVQKVKILREKLVEL 170 (171)
Q Consensus 143 s~~~~~a~~l~~~f~~~~~~~~~~~~~~ 170 (171)
|.++++|..|++.|++.++++++.++++
T Consensus 93 s~~~~~A~~L~~~~~~~~~~~~~~~~~~ 120 (135)
T 3rcw_A 93 TVFYRAAVRLRDQGGVVLRQARREVDSI 120 (135)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999998877653
No 15
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.97 E-value=1.5e-32 Score=186.64 Aligned_cols=110 Identities=28% Similarity=0.584 Sum_probs=102.3
Q ss_pred cCCChhHHHHHHHHHHHHHhCcC---CCCCccCCCCCC--CCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy5115 58 KNLTPRDFESLRKLMKQIQAHKS---AWPFMEPVDPHE--APDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIF 132 (171)
Q Consensus 58 ~~l~~~~~~~~~~~l~~l~~~~~---~~~F~~pv~~~~--~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~ 132 (171)
+...+++++.|..+|..|..++. +++|..||++.. +|+|+++|++||||++|++||++|.|.++++|.+||+|||
T Consensus 4 ~~~~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~ 83 (120)
T 3jvl_A 4 GSKISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMF 83 (120)
T ss_dssp SCSSCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHH
Confidence 35677889999999999998887 899999999986 9999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5115 133 DNCRYYNPRESPFFKHAHQLEMFFVQKVKILREKL 167 (171)
Q Consensus 133 ~Na~~yn~~~s~~~~~a~~l~~~f~~~~~~~~~~~ 167 (171)
+||.+||+++|.++.+|..|++.|++.+++++...
T Consensus 84 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~p~~~ 118 (120)
T 3jvl_A 84 SNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEP 118 (120)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHTTCCC--
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCcCCC
Confidence 99999999999999999999999999999876543
No 16
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.97 E-value=2.4e-31 Score=184.15 Aligned_cols=109 Identities=25% Similarity=0.440 Sum_probs=104.5
Q ss_pred ChhHHHHHHHHHHHHHhCcCCCCCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCC
Q psy5115 61 TPRDFESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDNCRYYNP 140 (171)
Q Consensus 61 ~~~~~~~~~~~l~~l~~~~~~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yn~ 140 (171)
.+...+.|..+|+.|..++.+++|..||++..+|+|+++|++||||+||++||++|.|.++++|..||+|||+||..||+
T Consensus 19 ~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~ 98 (135)
T 3mb3_A 19 IQAWKKQCEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAYTP 98 (135)
T ss_dssp SSTHHHHHHHHHHHHHHSGGGGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhCCCChhhcCCCChhhCCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5115 141 R-ESPFFKHAHQLEMFFVQKVKILREKLVE 169 (171)
Q Consensus 141 ~-~s~~~~~a~~l~~~f~~~~~~~~~~~~~ 169 (171)
+ +|.++.+|..|++.|++.++++.+++..
T Consensus 99 ~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~ 128 (135)
T 3mb3_A 99 SKRSRIYSMSLRLSAFFEEHISSVLSDYKS 128 (135)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 8999999999999999999999887764
No 17
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.97 E-value=1.5e-31 Score=180.60 Aligned_cols=101 Identities=38% Similarity=0.762 Sum_probs=97.4
Q ss_pred hhHHHHHHHHHHHHHhCcCCCCCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC
Q psy5115 62 PRDFESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDNCRYYNPR 141 (171)
Q Consensus 62 ~~~~~~~~~~l~~l~~~~~~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yn~~ 141 (171)
.+..+.|..+|+.|.+++.+++|..||++..+|+|+++|++||||++|++||++|.|.++++|..||+|||+||..||++
T Consensus 15 ~~~~~~~~~il~~l~~~~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 94 (116)
T 3nxb_A 15 DDDFTAMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGE 94 (116)
T ss_dssp CCHHHHHHHHHHHHHHSTTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCcCChhhccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q psy5115 142 ESPFFKHAHQLEMFFVQKVKI 162 (171)
Q Consensus 142 ~s~~~~~a~~l~~~f~~~~~~ 162 (171)
+|.++.+|..|++.|++.|.+
T Consensus 95 ~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 95 SSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp TCHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998864
No 18
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.97 E-value=1.3e-31 Score=180.86 Aligned_cols=106 Identities=24% Similarity=0.443 Sum_probs=101.0
Q ss_pred CChhHHHHHHHHHHHHHhCc------CCCCCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy5115 60 LTPRDFESLRKLMKQIQAHK------SAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFD 133 (171)
Q Consensus 60 l~~~~~~~~~~~l~~l~~~~------~~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~ 133 (171)
|+.++++.|..+++.|.+++ .+++|..||+...+|+|+++|++||||++|++||++|.|.++++|.+||+|||+
T Consensus 2 m~~~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 81 (116)
T 3iu5_A 2 MTVDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFN 81 (116)
T ss_dssp CSCCHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 67788999999999999884 489999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy5115 134 NCRYYNPRESPFFKHAHQLEMFFVQKVKILRE 165 (171)
Q Consensus 134 Na~~yn~~~s~~~~~a~~l~~~f~~~~~~~~~ 165 (171)
||..||+++|.++++|..|++.|++.++++.+
T Consensus 82 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~ 113 (116)
T 3iu5_A 82 NAKSYYKPDSPEYKAACKLWDLYLRTRNEFVQ 113 (116)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998764
No 19
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.97 E-value=3.8e-31 Score=181.57 Aligned_cols=111 Identities=20% Similarity=0.412 Sum_probs=103.7
Q ss_pred ccCCChhHHHHHHHHHHHHHhCc-------CCCCCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHH
Q psy5115 57 MKNLTPRDFESLRKLMKQIQAHK-------SAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMT 129 (171)
Q Consensus 57 ~~~l~~~~~~~~~~~l~~l~~~~-------~~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~ 129 (171)
+.+-.+...+.|..+|+.|.+++ .+++|..||+...+|+|+++|++||||+||++||++|.|.|+++|.+||+
T Consensus 5 ~~~~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~ 84 (129)
T 2grc_A 5 LSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVM 84 (129)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 34567788999999999999875 58899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5115 130 KIFDNCRYYNPRESPFFKHAHQLEMFFVQKVKILREKL 167 (171)
Q Consensus 130 li~~Na~~yn~~~s~~~~~a~~l~~~f~~~~~~~~~~~ 167 (171)
|||+||.+||+++|.++.+|..|++.|++.++++...-
T Consensus 85 Li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~~ 122 (129)
T 2grc_A 85 LLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKED 122 (129)
T ss_dssp HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999999999999987643
No 20
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.97 E-value=1.2e-31 Score=182.95 Aligned_cols=108 Identities=22% Similarity=0.427 Sum_probs=101.1
Q ss_pred ccCCChhHHHHHHHHHHHHHh------CcCCCCCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Q psy5115 57 MKNLTPRDFESLRKLMKQIQA------HKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTK 130 (171)
Q Consensus 57 ~~~l~~~~~~~~~~~l~~l~~------~~~~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~l 130 (171)
...+.+...+.|..+++.|.+ ++.+++|..||+...+|+|+++|++||||++|++||++|.|.++++|..||+|
T Consensus 9 ~~k~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~l 88 (124)
T 3mb4_A 9 KSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVM 88 (124)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred ccccChHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 346677888999999999998 45579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy5115 131 IFDNCRYYNPRESPFFKHAHQLEMFFVQKVKILR 164 (171)
Q Consensus 131 i~~Na~~yn~~~s~~~~~a~~l~~~f~~~~~~~~ 164 (171)
||+||..||+++|.++++|..|++.|++.++++.
T Consensus 89 i~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 89 MFNNACTYNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998875
No 21
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.97 E-value=2e-31 Score=182.46 Aligned_cols=109 Identities=27% Similarity=0.421 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHHHHHhCcC------CCCCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy5115 62 PRDFESLRKLMKQIQAHKS------AWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDNC 135 (171)
Q Consensus 62 ~~~~~~~~~~l~~l~~~~~------~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na 135 (171)
....+.|..+++.|.++.. +++|..||++..+|+|+++|++||||++|++||++|.|.++++|.+||+|||+||
T Consensus 8 ~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na 87 (126)
T 3mqm_A 8 ARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNA 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 4567788899999988754 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy5115 136 RYYNPRESPFFKHAHQLEMFFVQKVKILREKLVEL 170 (171)
Q Consensus 136 ~~yn~~~s~~~~~a~~l~~~f~~~~~~~~~~~~~~ 170 (171)
..||+++|.++++|..|++.|++.++++.+.+.++
T Consensus 88 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~l~~i 122 (126)
T 3mqm_A 88 EKYYGRKSPVGRDVCRLRKAYYNARHEASAQIDEI 122 (126)
T ss_dssp HHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998875
No 22
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.97 E-value=1.4e-31 Score=182.38 Aligned_cols=107 Identities=20% Similarity=0.393 Sum_probs=100.7
Q ss_pred CCChhHHHHHHHHHHHHHhCc------CCCCCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy5115 59 NLTPRDFESLRKLMKQIQAHK------SAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIF 132 (171)
Q Consensus 59 ~l~~~~~~~~~~~l~~l~~~~------~~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~ 132 (171)
...+...+.|..+++.|.+++ .+++|..||+...+|+|+++|++||||++|++||++|.|.++++|.+||+|||
T Consensus 9 ~~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 88 (123)
T 2dat_A 9 PNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLC 88 (123)
T ss_dssp CCCHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 356788899999999999886 58999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy5115 133 DNCRYYNPRESPFFKHAHQLEMFFVQKVKILRE 165 (171)
Q Consensus 133 ~Na~~yn~~~s~~~~~a~~l~~~f~~~~~~~~~ 165 (171)
+||.+||+++|.++.+|..|++.|++.++++++
T Consensus 89 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ps 121 (123)
T 2dat_A 89 HNAQTFNLEGSQIYEDSIVLQSVFKSARQSGPS 121 (123)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999987653
No 23
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.97 E-value=3e-31 Score=179.92 Aligned_cols=106 Identities=28% Similarity=0.569 Sum_probs=99.5
Q ss_pred hhHHHHHHHHHHHHHh-CcCCCCCccCCCCC--CCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhh
Q psy5115 62 PRDFESLRKLMKQIQA-HKSAWPFMEPVDPH--EAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDNCRYY 138 (171)
Q Consensus 62 ~~~~~~~~~~l~~l~~-~~~~~~F~~pv~~~--~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~y 138 (171)
.+..+.|..++..|.+ ++.+++|..||++. ++|+|+++|++||||++|++||++|.|.++++|.+||+|||+||..|
T Consensus 10 ~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 89 (119)
T 3p1f_A 10 EELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLY 89 (119)
T ss_dssp HHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3556779999999988 56999999999987 79999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5115 139 NPRESPFFKHAHQLEMFFVQKVKILREKL 167 (171)
Q Consensus 139 n~~~s~~~~~a~~l~~~f~~~~~~~~~~~ 167 (171)
|+++|.++++|..|++.|++.++++...+
T Consensus 90 N~~~s~i~~~A~~L~~~f~~~~~~~~~~l 118 (119)
T 3p1f_A 90 NRKTSRVYKFCSKLAEVFEQEIDPVMQSL 118 (119)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999987764
No 24
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.97 E-value=4.6e-31 Score=182.45 Aligned_cols=107 Identities=34% Similarity=0.601 Sum_probs=101.8
Q ss_pred cCCChhHHHHHHHHHHHHHhCcCCCCCccCCCCCCCCccccccCCCCCHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHH
Q psy5115 58 KNLTPRDFESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQ--QRYKKLSEFIGDMTKIFDNC 135 (171)
Q Consensus 58 ~~l~~~~~~~~~~~l~~l~~~~~~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~--~~Y~s~~~f~~Dv~li~~Na 135 (171)
..|++.+++.|..+|..|++++.+++|..||+. .+|+|+++|++||||++|++||++ |.|.++++|.+||+|||+||
T Consensus 15 ~~m~p~~~~~c~~il~~L~~~~~s~~F~~Pv~~-~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na 93 (135)
T 2yyn_A 15 VKLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNC 93 (135)
T ss_dssp -CCCHHHHHHHHHHHHHHHTSGGGGGGSSCCCT-TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhCccchhhcCCCcc-cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999987 699999999999999999999998 59999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy5115 136 RYYNPRESPFFKHAHQLEMFFVQKVKILRE 165 (171)
Q Consensus 136 ~~yn~~~s~~~~~a~~l~~~f~~~~~~~~~ 165 (171)
.+||+++|.++.+|..|++.|++.++++..
T Consensus 94 ~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 123 (135)
T 2yyn_A 94 AEFNEPDSEVANAGIKLENYFEELLKNLYP 123 (135)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999998754
No 25
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.97 E-value=1.4e-31 Score=183.90 Aligned_cols=106 Identities=29% Similarity=0.608 Sum_probs=98.4
Q ss_pred CChhHHHHHHHHHHHHHhCcC---CCCCccCCCCC--CCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy5115 60 LTPRDFESLRKLMKQIQAHKS---AWPFMEPVDPH--EAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDN 134 (171)
Q Consensus 60 l~~~~~~~~~~~l~~l~~~~~---~~~F~~pv~~~--~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~N 134 (171)
..+.+++.|..+|+.|..++. +++|..||++. .+|+|+++|++||||+||++||++|.|.++++|.+||+|||+|
T Consensus 19 ~~~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~N 98 (130)
T 2ouo_A 19 KVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSN 98 (130)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 345677899999999998764 89999999987 4999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy5115 135 CRYYNPRESPFFKHAHQLEMFFVQKVKILRE 165 (171)
Q Consensus 135 a~~yn~~~s~~~~~a~~l~~~f~~~~~~~~~ 165 (171)
|.+||+++|.++.+|..|++.|++.+++++.
T Consensus 99 a~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~ 129 (130)
T 2ouo_A 99 CYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 129 (130)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999987653
No 26
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.97 E-value=7.9e-31 Score=177.99 Aligned_cols=107 Identities=29% Similarity=0.434 Sum_probs=100.9
Q ss_pred ChhHHHHHHHHHHHHHhCcC------CCCCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy5115 61 TPRDFESLRKLMKQIQAHKS------AWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDN 134 (171)
Q Consensus 61 ~~~~~~~~~~~l~~l~~~~~------~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~N 134 (171)
...+...|..+++.|.+.+. +++|..||+...+|+|+++|++||||++|++||++|.|.++++|..||+|||+|
T Consensus 6 p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 85 (120)
T 3ljw_A 6 PAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKN 85 (120)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 45667789999999998876 999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5115 135 CRYYNPRESPFFKHAHQLEMFFVQKVKILREKL 167 (171)
Q Consensus 135 a~~yn~~~s~~~~~a~~l~~~f~~~~~~~~~~~ 167 (171)
|..||+++|.++++|..|++.|++.++++++..
T Consensus 86 a~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~~~ 118 (120)
T 3ljw_A 86 AKTYNEPGSQVFKDANSIKKIFYMKKAEIEHHE 118 (120)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999998754
No 27
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.97 E-value=8.8e-31 Score=178.37 Aligned_cols=103 Identities=26% Similarity=0.394 Sum_probs=98.4
Q ss_pred hhHHHHHHHHHHHHHhCcCCCCCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC
Q psy5115 62 PRDFESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDNCRYYNPR 141 (171)
Q Consensus 62 ~~~~~~~~~~l~~l~~~~~~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yn~~ 141 (171)
......|..+++.|.+++.+++|..||++..+|+|+++|++||||++|++||++|.|.++++|..||+|||+||..||++
T Consensus 12 ~p~~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 91 (123)
T 3hme_A 12 TPIQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTYNRP 91 (123)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCSSSSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCT
T ss_pred CHHHHHHHHHHHHHHhCCccHhhcCCCChhhccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 44577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q psy5115 142 ESPFFKHAHQLEMFFVQKVKILR 164 (171)
Q Consensus 142 ~s~~~~~a~~l~~~f~~~~~~~~ 164 (171)
+|.++++|..|++.|++.+.+.+
T Consensus 92 ~s~~~~~A~~L~~~~~~~~~~~~ 114 (123)
T 3hme_A 92 DTVYYKLAKKILHAGFKMMSKER 114 (123)
T ss_dssp TSHHHHHHHHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988654
No 28
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.97 E-value=1.2e-30 Score=186.17 Aligned_cols=107 Identities=26% Similarity=0.496 Sum_probs=100.1
Q ss_pred cCCChhHHHHHHHHHHHHHhCcCCCCCccCCCCC--CCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy5115 58 KNLTPRDFESLRKLMKQIQAHKSAWPFMEPVDPH--EAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDNC 135 (171)
Q Consensus 58 ~~l~~~~~~~~~~~l~~l~~~~~~~~F~~pv~~~--~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na 135 (171)
.++..+++..|..+|..|++++.+++|..||++. .+|+|+++|++||||+||++||++|.|.++++|..||+|||.||
T Consensus 16 ~p~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na 95 (166)
T 3fkm_X 16 FQGNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNC 95 (166)
T ss_dssp -CTTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 4788899999999999999999999999999976 59999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy5115 136 RYYNPRESPFFKHAHQLEMFFVQKVKILR 164 (171)
Q Consensus 136 ~~yn~~~s~~~~~a~~l~~~f~~~~~~~~ 164 (171)
.+||+++|.++.+|..|++.|++.|+++.
T Consensus 96 ~~yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 96 SLYNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp HHSSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999998753
No 29
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.97 E-value=1.8e-30 Score=178.26 Aligned_cols=106 Identities=25% Similarity=0.464 Sum_probs=98.7
Q ss_pred ChhHHHHHHHHHHHHHhCcC------CCCCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy5115 61 TPRDFESLRKLMKQIQAHKS------AWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDN 134 (171)
Q Consensus 61 ~~~~~~~~~~~l~~l~~~~~------~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~N 134 (171)
.......+..+++.+.+... +++|..||+...+|+|+++|++||||++|++||++|.|.|+++|..||+|||+|
T Consensus 15 ~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~N 94 (130)
T 3k2j_A 15 TENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFEN 94 (130)
T ss_dssp HHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 34567778888888887654 899999999999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy5115 135 CRYYNPRESPFFKHAHQLEMFFVQKVKILREK 166 (171)
Q Consensus 135 a~~yn~~~s~~~~~a~~l~~~f~~~~~~~~~~ 166 (171)
|..||+++|.++++|..|++.|++.++++.++
T Consensus 95 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 126 (130)
T 3k2j_A 95 AKRYNVPNSAIYKRVLKLQQVMQAKKKELARR 126 (130)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999998765
No 30
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.97 E-value=1.3e-30 Score=184.34 Aligned_cols=108 Identities=31% Similarity=0.569 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHH-----HHhCcCCCCCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy5115 63 RDFESLRKLMKQ-----IQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDNCRY 137 (171)
Q Consensus 63 ~~~~~~~~~l~~-----l~~~~~~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~ 137 (171)
.....|..+|.. +..++.+++|..||++..+|+|+++|++||||+||++||++|.|.++++|..||+|||+||.+
T Consensus 25 d~~~~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~ 104 (158)
T 3uv4_A 25 DDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVK 104 (158)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHcCCCchhhcCcCChhhcccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 344555555544 455788999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy5115 138 YNPRESPFFKHAHQLEMFFVQKVKILREKLVEL 170 (171)
Q Consensus 138 yn~~~s~~~~~a~~l~~~f~~~~~~~~~~~~~~ 170 (171)
||+++|.++++|..|.+.|++.++++++.+.++
T Consensus 105 yN~~~s~i~~~A~~L~~~~~~~l~e~~~~l~~l 137 (158)
T 3uv4_A 105 YNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQL 137 (158)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888765
No 31
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.96 E-value=2.5e-29 Score=172.79 Aligned_cols=106 Identities=30% Similarity=0.465 Sum_probs=95.9
Q ss_pred hhHHHHHHHHHHHHHhCcCCCCCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCC
Q psy5115 62 PRDFESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDNCRYYNPR 141 (171)
Q Consensus 62 ~~~~~~~~~~l~~l~~~~~~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yn~~ 141 (171)
.+....|..+++.|..++.+++|..||++..+|+|+++|++||||+||++||++|.|.++++|.+||+|||+||..||++
T Consensus 9 ~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~ 88 (130)
T 3dai_A 9 RELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPD 88 (130)
T ss_dssp HHHHHHHHHHHHHHHTSGGGGGGSSCCCTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHcCCccHhhcCCCChhhcCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 34566788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHH----HHHHHHHHHHHHHHHH-HHHHHh
Q psy5115 142 ESPF----FKHAHQLEMFFVQKVK-ILREKL 167 (171)
Q Consensus 142 ~s~~----~~~a~~l~~~f~~~~~-~~~~~~ 167 (171)
+|++ +..|..|++.+...++ ++.+++
T Consensus 89 ~s~~~~~i~~~A~~L~~~~~~~i~~el~~~~ 119 (130)
T 3dai_A 89 RDPGDRLIRHRACALRDTAYAIIKEELDEDF 119 (130)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9876 6888889988888885 444444
No 32
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.96 E-value=4.3e-29 Score=175.70 Aligned_cols=103 Identities=32% Similarity=0.494 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHHHHhCcC-------CCCCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy5115 63 RDFESLRKLMKQIQAHKS-------AWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDNC 135 (171)
Q Consensus 63 ~~~~~~~~~l~~l~~~~~-------~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na 135 (171)
.....|..++..+.+... +++|..||+...+|+|+++|++||||++|++||++|.|.++++|..||+|||+||
T Consensus 24 ~~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 103 (150)
T 3tlp_A 24 IRKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNA 103 (150)
T ss_dssp HHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 345667777777776654 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy5115 136 RYYNPRESPFFKHAHQLEMFFVQKVKILRE 165 (171)
Q Consensus 136 ~~yn~~~s~~~~~a~~l~~~f~~~~~~~~~ 165 (171)
..||+++|.++++|..|++.|++.++++..
T Consensus 104 ~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 133 (150)
T 3tlp_A 104 RHYNEEGSQVYNDAHILEKLLKEKRKELGP 133 (150)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHccC
Confidence 999999999999999999999999998763
No 33
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.95 E-value=7.4e-28 Score=183.86 Aligned_cols=107 Identities=22% Similarity=0.419 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHHHhCcCCCCCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q psy5115 63 RDFESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDNCRYYNPRE 142 (171)
Q Consensus 63 ~~~~~~~~~l~~l~~~~~~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yn~~~ 142 (171)
.....|..+|..|..++.+++|..||++..+|+|+.+|++||||+||++||++|.|.++++|..||+|||+||.+||+++
T Consensus 14 ~l~~~l~~il~~l~~~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~ 93 (265)
T 3uv5_A 14 TLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPK 93 (265)
T ss_dssp HHHHHHHHHHHHHHTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHcCCCchhhhCCCChhhcCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCCCC
Confidence 66778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5115 143 SPFFKHAHQLEMFFVQKVKILREKLVE 169 (171)
Q Consensus 143 s~~~~~a~~l~~~f~~~~~~~~~~~~~ 169 (171)
|.++.+|..|.+.|++.++++...+.+
T Consensus 94 s~i~~~A~~l~~~~~~~~~~~~~~~~~ 120 (265)
T 3uv5_A 94 HSLTQISQSMLDLCDEKLKEKEDKLAR 120 (265)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999988766654
No 34
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.95 E-value=3.7e-27 Score=161.70 Aligned_cols=98 Identities=30% Similarity=0.420 Sum_probs=89.8
Q ss_pred CCChhHHHHHHHHHHHHHhCcCCCCCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhh
Q psy5115 59 NLTPRDFESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDNCRYY 138 (171)
Q Consensus 59 ~l~~~~~~~~~~~l~~l~~~~~~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~y 138 (171)
....+....|..+++.|.+++.+++|..| +|+|+++|++||||+||++||++|.|.++++|..||+|||+||..|
T Consensus 8 ~~~~~L~~~~~~il~~l~~~~~~~~F~~P-----~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~y 82 (131)
T 2dkw_A 8 NTLRELRLFLRDVTKRLATDKRFNIFSKP-----VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEY 82 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHSGGGCTTSSC-----CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhCccchhhcCc-----CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34456777899999999999999999998 7999999999999999999999999999999999999999999999
Q ss_pred CCCCCH----HHHHHHHHHHHHHHHHH
Q psy5115 139 NPRESP----FFKHAHQLEMFFVQKVK 161 (171)
Q Consensus 139 n~~~s~----~~~~a~~l~~~f~~~~~ 161 (171)
|+++|+ ++.+|..|++.|...++
T Consensus 83 N~~~s~~~~~i~~~A~~L~~~~~~~l~ 109 (131)
T 2dkw_A 83 NPDKDPGDKIIRHRACTLKDTAHAIIA 109 (131)
T ss_dssp CCCSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 999985 57889999998888774
No 35
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.95 E-value=3.3e-27 Score=180.31 Aligned_cols=96 Identities=34% Similarity=0.618 Sum_probs=92.1
Q ss_pred HHhCcCCCCCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q psy5115 75 IQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDNCRYYNPRESPFFKHAHQLEM 154 (171)
Q Consensus 75 l~~~~~~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yn~~~s~~~~~a~~l~~ 154 (171)
+..++.+++|..||++..+|+|+++|++||||+||++||++|.|.++++|..||+|||+||..||+++|.++.+|..|++
T Consensus 149 l~~~~~~~~F~~pv~~~~~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~s~~~~~A~~l~~ 228 (265)
T 3uv5_A 149 MMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVN 228 (265)
T ss_dssp TTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHhhhhhHHHhCCCChhHhCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 66778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q psy5115 155 FFVQKVKILREKLVEL 170 (171)
Q Consensus 155 ~f~~~~~~~~~~~~~~ 170 (171)
.|++.++++.+.+.++
T Consensus 229 ~~~~~~~~~~~~~~~~ 244 (265)
T 3uv5_A 229 VCYQTLTEYDEHLTQL 244 (265)
T ss_dssp HHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998887654
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.94 E-value=1.9e-26 Score=178.07 Aligned_cols=97 Identities=34% Similarity=0.617 Sum_probs=92.7
Q ss_pred HHHhCcCCCCCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q psy5115 74 QIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDNCRYYNPRESPFFKHAHQLE 153 (171)
Q Consensus 74 ~l~~~~~~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yn~~~s~~~~~a~~l~ 153 (171)
.|..++.+++|..||++..+|+|+++|++||||++|++||++|.|.|+++|..||+|||+||..||+++|.++.+|..|+
T Consensus 181 ~l~~~~~s~~F~~pvd~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A~~L~ 260 (292)
T 3aad_A 181 KMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIV 260 (292)
T ss_dssp TGGGSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHH
T ss_pred hhhcCcchhHHHhcccccccccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 36778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhc
Q psy5115 154 MFFVQKVKILREKLVEL 170 (171)
Q Consensus 154 ~~f~~~~~~~~~~~~~~ 170 (171)
+.|++.++++.+.+.++
T Consensus 261 ~~~~~~~~~~~~~l~~l 277 (292)
T 3aad_A 261 NVCYQTLTEYDEHLTQL 277 (292)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998887765
No 37
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.93 E-value=7e-27 Score=180.56 Aligned_cols=106 Identities=23% Similarity=0.421 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHHHHhCcCCCCCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCC
Q psy5115 63 RDFESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDNCRYYNPRE 142 (171)
Q Consensus 63 ~~~~~~~~~l~~l~~~~~~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yn~~~ 142 (171)
.....|..+|+.|..++.+++|..||++..+|+|+++|++||||+||++||++|.|.++.+|..||+|||+||.+||+++
T Consensus 47 ~l~~~~~~il~~l~~~~~a~~F~~pV~~~~~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~ 126 (292)
T 3aad_A 47 TLSSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNGPK 126 (292)
T ss_dssp HHHHHHHHHHHHHSSSTTCGGGSSSCCTTTSTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHhCCcchhhcCCCCchhcccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCCc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy5115 143 SPFFKHAHQLEMFFVQKVKILREKLV 168 (171)
Q Consensus 143 s~~~~~a~~l~~~f~~~~~~~~~~~~ 168 (171)
|.++.+|..|.+.|++.++++.+.+.
T Consensus 127 s~i~~~A~~L~~~~~~~~~~~~~~~~ 152 (292)
T 3aad_A 127 HSLTQISQSMLDLCDEKLKEKEDKLA 152 (292)
T ss_dssp SHHHHHHTHHHHTTTTTGGGSHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhcchhhhh
Confidence 99999999999999998887666544
No 38
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.92 E-value=2.2e-25 Score=173.22 Aligned_cols=85 Identities=33% Similarity=0.590 Sum_probs=82.8
Q ss_pred CcCCCCCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHH
Q psy5115 78 HKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFV 157 (171)
Q Consensus 78 ~~~~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yn~~~s~~~~~a~~l~~~f~ 157 (171)
++.+++|..||++..+|+|+++|++||||+||++||++|.|.++++|.+||+|||+||++||+++|.++.+|..|++.|+
T Consensus 178 ~~~s~~F~~pvd~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~ 257 (311)
T 2r0y_A 178 VKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFN 257 (311)
T ss_dssp SCTTGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CccHHHHhCCCChhhcccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q psy5115 158 QKVKI 162 (171)
Q Consensus 158 ~~~~~ 162 (171)
+.+++
T Consensus 258 ~~~~~ 262 (311)
T 2r0y_A 258 YLIQK 262 (311)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99987
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.92 E-value=6.5e-25 Score=173.97 Aligned_cols=85 Identities=33% Similarity=0.590 Sum_probs=82.7
Q ss_pred CcCCCCCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHH
Q psy5115 78 HKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFV 157 (171)
Q Consensus 78 ~~~~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yn~~~s~~~~~a~~l~~~f~ 157 (171)
++.+++|..||++..+|+||++|++||||++|++||++|.|.++++|..||+|||+||++||+++|.++.+|..|++.|+
T Consensus 228 ~~~s~~F~~pvd~~~~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~ 307 (361)
T 2r10_A 228 VKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFN 307 (361)
T ss_dssp SCTTGGGSSCCCTTTCTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CcchhcccCCCChhhcccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q psy5115 158 QKVKI 162 (171)
Q Consensus 158 ~~~~~ 162 (171)
+.+++
T Consensus 308 ~~~~~ 312 (361)
T 2r10_A 308 YLIQK 312 (361)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99987
No 40
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.88 E-value=6.9e-22 Score=136.17 Aligned_cols=102 Identities=23% Similarity=0.392 Sum_probs=92.8
Q ss_pred ChhHHHHHHHHHHHHHhCc------CCCCCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy5115 61 TPRDFESLRKLMKQIQAHK------SAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDN 134 (171)
Q Consensus 61 ~~~~~~~~~~~l~~l~~~~------~~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~N 134 (171)
+...+..+..++..+.++. .+.+|...|+.. |+||. ++||+|.+|++|+++|.|+++++|..|+.+||+|
T Consensus 5 ~~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~N 80 (147)
T 3iu6_A 5 TLLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD--PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLER 80 (147)
T ss_dssp CCHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC--TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC--ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 4556778888999998875 367899998877 78998 9999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy5115 135 CRYYNPRESPFFKHAHQLEMFFVQKVKILREK 166 (171)
Q Consensus 135 a~~yn~~~s~~~~~a~~l~~~f~~~~~~~~~~ 166 (171)
|++||.+||+|+++|..|++.|.+..+++..+
T Consensus 81 Ar~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 81 ARRMNRTDSEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999998765
No 41
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.87 E-value=2.1e-22 Score=156.44 Aligned_cols=98 Identities=21% Similarity=0.297 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHhC--cCCCCCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHhhhCC
Q psy5115 64 DFESLRKLMKQIQAH--KSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYK-KLSEFIGDMTKIFDNCRYYNP 140 (171)
Q Consensus 64 ~~~~~~~~l~~l~~~--~~~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~-s~~~f~~Dv~li~~Na~~yn~ 140 (171)
....+..+|..+.+. ..+++|..||+...+|+||++|++||||+||++|+ +.|. ++++|..||+|||+||.+||+
T Consensus 29 ~~~~~~~~L~~~~~~~r~~~~~F~~p~~~~~~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na~~yN~ 106 (311)
T 2r0y_A 29 FNRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNE 106 (311)
T ss_dssp HHHHHHHHHHHHHHHSHHHHGGGSSCCCTTTCHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHcCCchhHHhcCCCCcccCCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHHHHccC
Confidence 334444455555432 36889999999999999999999999999999998 5555 899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q psy5115 141 RESPFFKHAHQLEMFFVQKVKIL 163 (171)
Q Consensus 141 ~~s~~~~~a~~l~~~f~~~~~~~ 163 (171)
++|.++++|..|++.|++.|.+.
T Consensus 107 ~~s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 107 YDSLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999988765
No 42
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.87 E-value=2.2e-22 Score=159.46 Aligned_cols=97 Identities=22% Similarity=0.316 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhC--cCCCCCccCCCCCCCCccccccCCCCCHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHHhhhCCC
Q psy5115 65 FESLRKLMKQIQAH--KSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYK-KLSEFIGDMTKIFDNCRYYNPR 141 (171)
Q Consensus 65 ~~~~~~~l~~l~~~--~~~~~F~~pv~~~~~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~-s~~~f~~Dv~li~~Na~~yn~~ 141 (171)
...|..+|+.+.+. ..+++|..||+...+|+||++|++||||+||++|| +.|. ++++|..||+|||+||..||++
T Consensus 80 ~~~~~~~l~~l~~~~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na~~yN~~ 157 (361)
T 2r10_A 80 NRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEY 157 (361)
T ss_dssp HHHHHHHHHHHHHHTHHHHGGGSSCCCTTTCTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHHHHHBCS
T ss_pred HHHHHHHHHHHHHcCCcccHHhcCCCCcccCCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHHhhcCCC
Confidence 34566777777553 35799999999999999999999999999999998 4555 8999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q psy5115 142 ESPFFKHAHQLEMFFVQKVKIL 163 (171)
Q Consensus 142 ~s~~~~~a~~l~~~f~~~~~~~ 163 (171)
+|.++.+|..|++.|++.|.+.
T Consensus 158 ~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 158 DSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999988765
No 43
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.53 E-value=2.8e-15 Score=90.20 Aligned_cols=47 Identities=43% Similarity=1.081 Sum_probs=41.5
Q ss_pred ccccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 3 FHTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 3 ~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
.|.++++++++||+||.|.+|||..|++++....+..+.|+|+.|..
T Consensus 11 ~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 11 ACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 57999998899999999999999999999876655568999999973
No 44
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=99.53 E-value=2.6e-15 Score=86.45 Aligned_cols=45 Identities=33% Similarity=0.819 Sum_probs=38.6
Q ss_pred ccccccCCCceeEecC-CCCceecccccCccccCcCCCCCCCCCccC
Q psy5115 3 FHTLAVIEPKFYICCD-TCQDWFHGRCVGILQSEADNIDEYICPNCN 48 (171)
Q Consensus 3 ~~~~~~~~~~~~i~C~-~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~ 48 (171)
.|++||+++++||+|| .|.+|||..|+|++..... .+.|+||.|.
T Consensus 7 ~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~-~~~~~C~~C~ 52 (52)
T 2kgg_A 7 NCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAE-NEDYICINCA 52 (52)
T ss_dssp TCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHH-HSCCCCSCC-
T ss_pred CCcCccCCCCcEEEeCCCCCccCcccccCCCccccC-CCCEECCCCC
Confidence 5899999999999999 8999999999999865432 3789999994
No 45
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.47 E-value=2.1e-14 Score=89.82 Aligned_cols=48 Identities=44% Similarity=0.936 Sum_probs=42.1
Q ss_pred ccccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCCC
Q psy5115 3 FHTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNS 50 (171)
Q Consensus 3 ~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~~ 50 (171)
+|.+++|++++||+||.|..|||..|++++......++.|+|+.|...
T Consensus 16 ~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 16 LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 478999888999999999999999999998776655789999999853
No 46
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=99.47 E-value=2e-14 Score=82.78 Aligned_cols=44 Identities=25% Similarity=0.688 Sum_probs=37.0
Q ss_pred ccccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 3 FHTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 3 ~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
+|+++++ +++||+||.|..|||..|+|++... .++.|+||.|..
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~--~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSN--VPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGG--CCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCccc--CCCcEECcCCCC
Confidence 4688877 6679999999999999999998653 357999999963
No 47
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=99.46 E-value=8.7e-15 Score=90.68 Aligned_cols=46 Identities=50% Similarity=1.107 Sum_probs=41.2
Q ss_pred ccccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccC
Q psy5115 3 FHTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCN 48 (171)
Q Consensus 3 ~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~ 48 (171)
+|.+++|++++||+||.|..|||..|++++.......+.|+|+.|.
T Consensus 14 iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~ 59 (75)
T 3kqi_A 14 VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCE 59 (75)
T ss_dssp TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHH
T ss_pred ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCc
Confidence 5799999899999999999999999999987765556789999998
No 48
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=99.42 E-value=7.2e-14 Score=84.64 Aligned_cols=44 Identities=25% Similarity=0.698 Sum_probs=36.8
Q ss_pred ccccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 3 FHTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 3 ~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
+|+++++ +++||+||.|..|||..|+|++.. ..++.|+||.|..
T Consensus 23 iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~--~~~~~~~C~~C~~ 66 (68)
T 3o70_A 23 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKS--NVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCCT-TCCEEECTTTCCEEETTTTTCCTT--SCCSSCCCHHHHT
T ss_pred ECCCcCC-CCCEEECCCCCccccccccCcCcc--cCCCcEECCCCCC
Confidence 4677777 567999999999999999999865 3467999999963
No 49
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=99.39 E-value=9.3e-15 Score=87.70 Aligned_cols=46 Identities=28% Similarity=0.668 Sum_probs=39.3
Q ss_pred ccccccCCCceeEecC-CCCceecccccCccccCc-----CCCCCCCCCccC
Q psy5115 3 FHTLAVIEPKFYICCD-TCQDWFHGRCVGILQSEA-----DNIDEYICPNCN 48 (171)
Q Consensus 3 ~~~~~~~~~~~~i~C~-~C~r~~H~~C~~~~~~~~-----~~~~~~~Cp~C~ 48 (171)
.|.+|++++.+||+|| .|.+|||..|+|++.... ++...|+||.|.
T Consensus 13 ~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 13 ICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp TTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred cCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 5899999999999999 999999999999987532 234589999994
No 50
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.36 E-value=2.9e-13 Score=83.16 Aligned_cols=45 Identities=24% Similarity=0.605 Sum_probs=38.4
Q ss_pred ccccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccC
Q psy5115 3 FHTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCN 48 (171)
Q Consensus 3 ~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~ 48 (171)
.|.++++++++||+||.|.+|||..|++++... ..++.|+||.|.
T Consensus 20 ~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~-~~~~~~~C~~C~ 64 (72)
T 1wee_A 20 KCGTKDDDGERMLACDGCGVWHHTRCIGINNAD-ALPSKFLCFRCI 64 (72)
T ss_dssp TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTS-CCCSCCCCHHHH
T ss_pred eCCCccCCCCcEEECCCCCCccCCeeeccCccc-cCCCcEECCCcc
Confidence 367888777789999999999999999997643 356899999997
No 51
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=99.32 E-value=9.7e-14 Score=91.23 Aligned_cols=46 Identities=28% Similarity=0.652 Sum_probs=39.3
Q ss_pred ccccccCCCceeEecC-CCCceecccccCccccCc-----CCCCCCCCCccC
Q psy5115 3 FHTLAVIEPKFYICCD-TCQDWFHGRCVGILQSEA-----DNIDEYICPNCN 48 (171)
Q Consensus 3 ~~~~~~~~~~~~i~C~-~C~r~~H~~C~~~~~~~~-----~~~~~~~Cp~C~ 48 (171)
.|++||++++.||+|| .|.+|||..|+|++.... +..+.|+||.|.
T Consensus 8 iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~ 59 (105)
T 2xb1_A 8 ACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCL 59 (105)
T ss_dssp TTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECcccc
Confidence 5899998888999998 999999999999986432 234789999998
No 52
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.30 E-value=6e-13 Score=82.93 Aligned_cols=45 Identities=22% Similarity=0.521 Sum_probs=37.0
Q ss_pred ccccccCCCceeEecC--CCCceecccccCccccCc----CCCCCCCCCccC
Q psy5115 3 FHTLAVIEPKFYICCD--TCQDWFHGRCVGILQSEA----DNIDEYICPNCN 48 (171)
Q Consensus 3 ~~~~~~~~~~~~i~C~--~C~r~~H~~C~~~~~~~~----~~~~~~~Cp~C~ 48 (171)
+|.++ +++|+||+|| .|..|||..|++++.... +.++.|+|+.|.
T Consensus 20 iC~~~-~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~ 70 (78)
T 1wew_A 20 VCGNS-LETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICR 70 (78)
T ss_dssp SSCCC-CCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHH
T ss_pred ECCCc-CCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCC
Confidence 35666 4567899999 999999999999987643 457899999997
No 53
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=99.27 E-value=2e-12 Score=83.98 Aligned_cols=44 Identities=32% Similarity=0.829 Sum_probs=35.4
Q ss_pred ccccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 3 FHTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 3 ~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
+|.++.++ |.||+||.|.+|||..|+++... ..++.|+||.|+.
T Consensus 32 iC~~~~~~-~~mi~Cd~C~~w~H~~C~~~~~~--~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 32 ICGFTHDD-GYMICCDKCSVWQHIDCMGIDRQ--HIPDTYLCERCQP 75 (98)
T ss_dssp TTSCCSCS-SCEEEBTTTCBEEETTTTTCCTT--SCCSSBCCTTTSS
T ss_pred ECCCccCC-CcEEEcCCCCCcCcCcCCCCCcc--CCCCCEECCCCcC
Confidence 36777654 56999999999999999998643 3456899999973
No 54
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.25 E-value=4.2e-13 Score=83.30 Aligned_cols=45 Identities=47% Similarity=1.192 Sum_probs=36.5
Q ss_pred ccccccCCCceeEecCCCCceecccccCccccCcC----CCCCCCCCccC
Q psy5115 3 FHTLAVIEPKFYICCDTCQDWFHGRCVGILQSEAD----NIDEYICPNCN 48 (171)
Q Consensus 3 ~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~----~~~~~~Cp~C~ 48 (171)
+|.++++ +++||+||.|.+|||..|++++..... .++.|+|+.|.
T Consensus 20 ~C~~~~~-~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~ 68 (76)
T 1wem_A 20 ICRQPHN-NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCT 68 (76)
T ss_dssp TTCCCCC-SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHH
T ss_pred ECCCccC-CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCc
Confidence 4688877 457999999999999999999765321 35689999997
No 55
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=99.23 E-value=9.6e-12 Score=75.83 Aligned_cols=41 Identities=32% Similarity=0.839 Sum_probs=32.5
Q ss_pred cccccCCCceeEecCC--CC-ceecccccCccccCcCCCCCCCCCccCC
Q psy5115 4 HTLAVIEPKFYICCDT--CQ-DWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 4 ~~~~~~~~~~~i~C~~--C~-r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
|+++.+ |+||+||. |+ .|||..|++++.. +.+.|+||.|..
T Consensus 21 C~~~~~--g~MI~CD~~~C~~~wfH~~Cvgl~~~---p~g~w~Cp~C~~ 64 (71)
T 1wen_A 21 CHQVSY--GEMIGCDNPDCSIEWFHFACVGLTTK---PRGKWFCPRCSQ 64 (71)
T ss_dssp TCCCSC--SSEECCSCSSCSCCCEETTTTTCSSC---CSSCCCCTTTSS
T ss_pred CCCCCC--CCEeEeeCCCCCCccEecccCCcCcC---CCCCEECCCCCc
Confidence 455543 67999999 88 6999999998644 346899999974
No 56
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=99.22 E-value=4e-12 Score=75.46 Aligned_cols=40 Identities=30% Similarity=0.782 Sum_probs=32.3
Q ss_pred cccccCCCceeEecCC--CC-ceecccccCccccCcCCCCCCCCCccC
Q psy5115 4 HTLAVIEPKFYICCDT--CQ-DWFHGRCVGILQSEADNIDEYICPNCN 48 (171)
Q Consensus 4 ~~~~~~~~~~~i~C~~--C~-r~~H~~C~~~~~~~~~~~~~~~Cp~C~ 48 (171)
|+++.+ |+||+||. |+ +|||..|++++.. +.+.|+||.|.
T Consensus 16 C~~~~~--g~MI~CD~c~C~~~WfH~~Cvgl~~~---p~~~w~Cp~C~ 58 (62)
T 2g6q_A 16 CNQVSY--GEMIGCDNEQCPIEWFHFSCVSLTYK---PKGKWYCPKCR 58 (62)
T ss_dssp TTEECC--SEEEECSCTTCSSCEEETGGGTCSSC---CSSCCCCHHHH
T ss_pred CCCCCC--CCeeeeeCCCCCcccEecccCCcCcC---CCCCEECcCcc
Confidence 556543 57999999 66 9999999998754 35789999996
No 57
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=99.22 E-value=5.1e-12 Score=78.18 Aligned_cols=44 Identities=32% Similarity=0.741 Sum_probs=35.1
Q ss_pred ccccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccC
Q psy5115 3 FHTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCN 48 (171)
Q Consensus 3 ~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~ 48 (171)
.|.++++ +++||+||.|.+|||..|++++.... ..+.|+||.|.
T Consensus 23 ~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~-~~~~w~C~~C~ 66 (75)
T 2k16_A 23 GCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPP-EEMQWFCPKCA 66 (75)
T ss_dssp TTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCC-SSSCCCCTTTH
T ss_pred CCCCCCC-CCCEEEcCCCCcccccccCCCCccCC-CCCCEEChhcc
Confidence 3566655 45699999999999999999876543 35789999996
No 58
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=99.21 E-value=4.7e-12 Score=74.46 Aligned_cols=40 Identities=30% Similarity=0.753 Sum_probs=32.1
Q ss_pred cccccCCCceeEecCC--CC-ceecccccCccccCcCCCCCCCCCccC
Q psy5115 4 HTLAVIEPKFYICCDT--CQ-DWFHGRCVGILQSEADNIDEYICPNCN 48 (171)
Q Consensus 4 ~~~~~~~~~~~i~C~~--C~-r~~H~~C~~~~~~~~~~~~~~~Cp~C~ 48 (171)
|++++ .|+||+||. |+ .|||..|+|++.. +.++|+||.|.
T Consensus 14 C~~~~--~g~mi~CD~~~C~~~wfH~~Cvgl~~~---p~~~w~Cp~C~ 56 (59)
T 3c6w_A 14 CHQVS--YGEMIGCDNPDCPIEWFHFACVDLTTK---PKGKWFCPRCV 56 (59)
T ss_dssp TTEEC--CSEEEECSCTTCSSCEEETGGGTCSSC---CSSCCCCHHHH
T ss_pred CCCCC--CCCeeEeeCCCCCCCCEecccCCcccC---CCCCEECcCcc
Confidence 56664 367999999 88 6999999998754 34689999996
No 59
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.19 E-value=1.4e-11 Score=78.42 Aligned_cols=41 Identities=32% Similarity=0.839 Sum_probs=32.7
Q ss_pred cccccCCCceeEecCC--CC-ceecccccCccccCcCCCCCCCCCccCC
Q psy5115 4 HTLAVIEPKFYICCDT--CQ-DWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 4 ~~~~~~~~~~~i~C~~--C~-r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
|+++++ |+||+||. |+ .|||..|++++.. +.++|+||.|..
T Consensus 41 C~~~~~--g~MI~CD~~dC~~~WfH~~CVgl~~~---p~g~W~Cp~C~~ 84 (91)
T 1weu_A 41 CHQVSY--GEMIGCDNPDCSIEWFHFACVGLTTK---PRGKWFCPRCSQ 84 (91)
T ss_dssp TCCBCC--SCCCCCSCSSCSCCCCCSTTTTCSSC---CCSSCCCTTTCC
T ss_pred CCCCCC--CCEeEecCCCCCCCCEecccCCcCcC---CCCCEECcCccC
Confidence 455553 67999999 87 7999999998754 346899999974
No 60
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=99.18 E-value=9.1e-12 Score=75.50 Aligned_cols=44 Identities=25% Similarity=0.554 Sum_probs=34.0
Q ss_pred cccccCCCceeEecC--CCCceecccccCccccCcC---CCCCCCCCccC
Q psy5115 4 HTLAVIEPKFYICCD--TCQDWFHGRCVGILQSEAD---NIDEYICPNCN 48 (171)
Q Consensus 4 ~~~~~~~~~~~i~C~--~C~r~~H~~C~~~~~~~~~---~~~~~~Cp~C~ 48 (171)
|..+.+ +|+||+|| .|..|||..|+|++..... .++.|+||.|+
T Consensus 15 C~~~~~-~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr 63 (68)
T 2rsd_A 15 CSSTMV-NDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCR 63 (68)
T ss_dssp TCCCSC-CSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHH
T ss_pred CCCCcC-CCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCcc
Confidence 455444 56799999 5999999999999765433 35689999996
No 61
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=99.17 E-value=9.9e-12 Score=73.37 Aligned_cols=41 Identities=32% Similarity=0.849 Sum_probs=32.4
Q ss_pred ccccccCCCceeEecCC--CC-ceecccccCccccCcCCCCCCCCCccC
Q psy5115 3 FHTLAVIEPKFYICCDT--CQ-DWFHGRCVGILQSEADNIDEYICPNCN 48 (171)
Q Consensus 3 ~~~~~~~~~~~~i~C~~--C~-r~~H~~C~~~~~~~~~~~~~~~Cp~C~ 48 (171)
+|+++.+ |+||+||+ |+ +|||..|++++.. +.+.|+||.|.
T Consensus 14 ~C~~~~~--g~mi~CD~cdC~~~wfH~~Cvgl~~~---p~g~w~C~~C~ 57 (60)
T 2vnf_A 14 LCHQVSY--GEMIGCDNPDCSIEWFHFACVGLTTK---PRGKWFCPRCS 57 (60)
T ss_dssp TTTEECC--SEEEECSCTTCSSCEEETGGGTCSSC---CSSCCCCHHHH
T ss_pred ECCCcCC--CCEEEeCCCCCCCceEehhcCCCCcC---CCCCEECcCcc
Confidence 3566643 67999999 77 8999999998643 34789999995
No 62
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=99.08 E-value=8.4e-12 Score=100.83 Aligned_cols=46 Identities=50% Similarity=1.105 Sum_probs=41.5
Q ss_pred ccccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccC
Q psy5115 3 FHTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCN 48 (171)
Q Consensus 3 ~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~ 48 (171)
+|++++|++++||+||.|..|||..|+|++.......+.|+||.|.
T Consensus 9 iC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~ 54 (447)
T 3kv4_A 9 LCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCE 54 (447)
T ss_dssp TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHH
T ss_pred eCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCc
Confidence 4799999899999999999999999999987765556889999998
No 63
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=99.07 E-value=1.3e-11 Score=100.89 Aligned_cols=46 Identities=46% Similarity=0.999 Sum_probs=41.4
Q ss_pred ccccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccC
Q psy5115 3 FHTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCN 48 (171)
Q Consensus 3 ~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~ 48 (171)
+|.+++|++++||+||.|..|||..|+|++.......+.|+|+.|.
T Consensus 41 ~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~ 86 (488)
T 3kv5_D 41 VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCA 86 (488)
T ss_dssp TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHH
T ss_pred eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCc
Confidence 4799999899999999999999999999987765556789999998
No 64
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=99.06 E-value=7.2e-11 Score=74.93 Aligned_cols=40 Identities=28% Similarity=0.698 Sum_probs=31.6
Q ss_pred cccccCCCceeEecCCCC---ceecccccCccccCcCCCCCCCCCc-cC
Q psy5115 4 HTLAVIEPKFYICCDTCQ---DWFHGRCVGILQSEADNIDEYICPN-CN 48 (171)
Q Consensus 4 ~~~~~~~~~~~i~C~~C~---r~~H~~C~~~~~~~~~~~~~~~Cp~-C~ 48 (171)
|+++.+ |+||+||.|. .|||..|++++... .+.|+||. |.
T Consensus 31 C~~~~~--g~MI~CD~c~C~~eWfH~~CVgl~~~p---~~~W~Cp~cC~ 74 (90)
T 2jmi_A 31 CRNVSY--GPMVACDNPACPFEWFHYGCVGLKQAP---KGKWYCSKDCK 74 (90)
T ss_dssp TTCCCS--SSEECCCSSSCSCSCEETTTSSCSSCT---TSCCCSSHHHH
T ss_pred eCCCCC--CCEEEecCCCCccccCcCccCCCCcCC---CCCccCChhhc
Confidence 455544 4699999966 89999999987543 46899999 96
No 65
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.05 E-value=1.4e-10 Score=66.21 Aligned_cols=45 Identities=24% Similarity=0.454 Sum_probs=32.8
Q ss_pred cccccCC--CceeEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 4 HTLAVIE--PKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 4 ~~~~~~~--~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
|.++..+ ++.||.||+|++|||..|+++... ..+.+.|+|+.|..
T Consensus 3 C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~-~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALY-EVPDGEWQCPACQP 49 (51)
T ss_dssp CTTTCCSSCCSCCEECTTTCCEECHHHHCTTCC-SCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCEEECCCCChhhCcccCCCCcC-CCCCCcEECcCccc
Confidence 4444432 456999999999999999965322 23456899999973
No 66
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=3.6e-11 Score=73.06 Aligned_cols=40 Identities=28% Similarity=0.741 Sum_probs=32.2
Q ss_pred cccccCCCceeEecCCCC---ceecccccCccccCcCCCCCCCCCccC
Q psy5115 4 HTLAVIEPKFYICCDTCQ---DWFHGRCVGILQSEADNIDEYICPNCN 48 (171)
Q Consensus 4 ~~~~~~~~~~~i~C~~C~---r~~H~~C~~~~~~~~~~~~~~~Cp~C~ 48 (171)
|+++. .|+||+||.|. .|||..|++++.. +.+.|+||.|.
T Consensus 11 C~~~~--~g~MI~CD~cdC~~~WfH~~Cvgl~~~---p~~~w~Cp~C~ 53 (70)
T 1x4i_A 11 CNQVS--YGEMVGCDNQDCPIEWFHYGCVGLTEA---PKGKWYCPQCT 53 (70)
T ss_dssp TSCCC--CSSEECCSCTTCSCCCEEHHHHTCSSC---CSSCCCCHHHH
T ss_pred cCCCC--CCCEeEeCCCCCCccCCcccccccCcC---CCCCEECCCCC
Confidence 45553 44899999974 9999999998753 36789999996
No 67
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.04 E-value=2.3e-10 Score=67.73 Aligned_cols=46 Identities=26% Similarity=0.625 Sum_probs=36.6
Q ss_pred CccccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 2 KFHTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 2 ~~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
.+|.+|.+++ .||.||.|+++||..|+++... ..+.+.|+|+.|..
T Consensus 10 ~~C~vC~~~g-~ll~Cd~C~~~fH~~Cl~ppl~-~~p~g~W~C~~C~~ 55 (61)
T 1mm2_A 10 EFCRVCKDGG-ELLCCDTCPSSYHIHCLNPPLP-EIPNGEWLCPRCTC 55 (61)
T ss_dssp SSCTTTCCCS-SCBCCSSSCCCBCSSSSSSCCS-SCCSSCCCCTTTTT
T ss_pred CcCCCCCCCC-CEEEcCCCCHHHcccccCCCcC-cCCCCccCChhhcC
Confidence 3688888765 5999999999999999985433 23457899999974
No 68
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.04 E-value=1.1e-10 Score=69.20 Aligned_cols=45 Identities=22% Similarity=0.510 Sum_probs=36.2
Q ss_pred CccccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccC
Q psy5115 2 KFHTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCN 48 (171)
Q Consensus 2 ~~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~ 48 (171)
.+|..|.++ +.||.||.|++|||..|+++... ..+.+.|+|+.|.
T Consensus 12 ~~C~vC~~~-g~ll~CD~C~~~fH~~Cl~p~l~-~~p~g~W~C~~C~ 56 (61)
T 2l5u_A 12 DYCEVCQQG-GEIILCDTCPRAYHMVCLDPDME-KAPEGKWSCPHCE 56 (61)
T ss_dssp SSCTTTSCC-SSEEECSSSSCEEEHHHHCTTCC-SCCCSSCCCTTGG
T ss_pred CCCccCCCC-CcEEECCCCChhhhhhccCCCCC-CCCCCceECcccc
Confidence 368888875 46999999999999999987433 2356789999996
No 69
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.03 E-value=1.4e-10 Score=69.75 Aligned_cols=45 Identities=22% Similarity=0.413 Sum_probs=36.1
Q ss_pred CccccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccC
Q psy5115 2 KFHTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCN 48 (171)
Q Consensus 2 ~~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~ 48 (171)
.+|.+|.+++ .||.||.|++|||..|+++... ..+.+.|+|+.|.
T Consensus 9 ~~C~vC~~~g-~ll~CD~C~~~fH~~Cl~ppl~-~~P~g~W~C~~C~ 53 (66)
T 1xwh_A 9 DECAVCRDGG-ELICCDGCPRAFHLACLSPPLR-EIPSGTWRCSSCL 53 (66)
T ss_dssp CSBSSSSCCS-SCEECSSCCCEECTTTSSSCCS-SCCSSCCCCHHHH
T ss_pred CCCccCCCCC-CEEEcCCCChhhcccccCCCcC-cCCCCCeECcccc
Confidence 3688888765 5999999999999999985333 2345789999997
No 70
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.02 E-value=5.7e-10 Score=70.33 Aligned_cols=47 Identities=17% Similarity=0.326 Sum_probs=37.2
Q ss_pred CccccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCCC
Q psy5115 2 KFHTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNS 50 (171)
Q Consensus 2 ~~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~~ 50 (171)
.+|.+|.+++. +|.||.|++.||..|+.+... ..+.+.|+|+.|...
T Consensus 26 ~~C~vC~~~g~-LL~CD~C~~~fH~~Cl~PpL~-~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 26 TICRVCQKPGD-LVMCNQCEFCFHLDCHLPALQ-DVPGEEWSCSLCHVL 72 (88)
T ss_dssp SCCSSSCSSSC-CEECTTSSCEECTTSSSTTCC-CCCSSSCCCCSCCCC
T ss_pred CcCcCcCCCCC-EEECCCCCCceecccCCCCCC-CCcCCCcCCccccCC
Confidence 47889998764 999999999999999954322 235678999999843
No 71
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.99 E-value=2.3e-10 Score=67.57 Aligned_cols=45 Identities=24% Similarity=0.566 Sum_probs=35.9
Q ss_pred CccccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccC
Q psy5115 2 KFHTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCN 48 (171)
Q Consensus 2 ~~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~ 48 (171)
.+|.+|.+++ .||.||.|++|||..|+++... ..+.+.|+||.|.
T Consensus 6 ~~C~vC~~~g-~ll~Cd~C~~~fH~~Cl~ppl~-~~p~g~W~C~~C~ 50 (60)
T 2puy_A 6 DFCSVCRKSG-QLLMCDTCSRVYHLDCLDPPLK-TIPKGMWICPRCQ 50 (60)
T ss_dssp SSCTTTCCCS-SCEECSSSSCEECGGGSSSCCS-SCCCSCCCCHHHH
T ss_pred CCCcCCCCCC-cEEEcCCCCcCEECCcCCCCcC-CCCCCceEChhcc
Confidence 3688888764 6999999999999999985333 2345789999996
No 72
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=2.7e-10 Score=66.31 Aligned_cols=45 Identities=24% Similarity=0.566 Sum_probs=35.7
Q ss_pred CccccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccC
Q psy5115 2 KFHTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCN 48 (171)
Q Consensus 2 ~~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~ 48 (171)
.+|.++.+++ .||.||.|++|||..|+++... ..+.+.|+||.|.
T Consensus 10 ~~C~vC~~~g-~ll~Cd~C~~~~H~~Cl~ppl~-~~p~g~W~C~~C~ 54 (56)
T 2yql_A 10 DFCSVCRKSG-QLLMCDTCSRVYHLDCLDPPLK-TIPKGMWICPRCQ 54 (56)
T ss_dssp CSCSSSCCSS-CCEECSSSSCEECSSSSSSCCC-SCCCSSCCCHHHH
T ss_pred CCCccCCCCC-eEEEcCCCCcceECccCCCCcC-CCCCCceEChhhh
Confidence 3688888764 6999999999999999985333 2345789999995
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=98.97 E-value=3.3e-10 Score=67.95 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=35.3
Q ss_pred ccccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 3 FHTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 3 ~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
-|..|.+++. ||.||.|+++||..|+.+... ..+.+.|+|+.|..
T Consensus 14 ~C~vC~~~~~-ll~Cd~C~~~~H~~Cl~P~l~-~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 14 RCGVCGDGTD-VLRCTHCAAAFHWRCHFPAGT-SRPGTGLRCRSCSG 58 (66)
T ss_dssp CCTTTSCCTT-CEECSSSCCEECHHHHCTTTC-CCCSSSCCCTTTTT
T ss_pred CcCCCCCCCe-EEECCCCCCceecccCCCccC-cCCCCCEECccccC
Confidence 4788887655 999999999999999965322 23456899999973
No 74
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.92 E-value=6.4e-10 Score=76.29 Aligned_cols=66 Identities=15% Similarity=0.367 Sum_probs=48.0
Q ss_pred CccccccCCCceeEecCCCCceecccccCccccC----c--CCCCCCCCCccCCCCcccccccCCChhHHHHHHHHHHHH
Q psy5115 2 KFHTLAVIEPKFYICCDTCQDWFHGRCVGILQSE----A--DNIDEYICPNCNNSSSNLANMKNLTPRDFESLRKLMKQI 75 (171)
Q Consensus 2 ~~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~----~--~~~~~~~Cp~C~~~~~~~~~~~~l~~~~~~~~~~~l~~l 75 (171)
.+|+.|.++++ +++||.|+|+||..|+.+.... . .+.+.|.|+.|... .....++.+..+++.+
T Consensus 64 d~C~vC~~GG~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~---------pl~~l~~~c~~~~~~~ 133 (142)
T 2lbm_A 64 EQCRWCAEGGN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE---------PLLDLVTACNSVFENL 133 (142)
T ss_dssp CSCSSSCCCSS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC---------TTHHHHHHHHHHHHHH
T ss_pred CeecccCCCCc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc---------cHHHHHHHHHHHHHHH
Confidence 47999999887 9999999999999999643221 0 35678999999732 2244556677776666
Q ss_pred Hh
Q psy5115 76 QA 77 (171)
Q Consensus 76 ~~ 77 (171)
..
T Consensus 134 ~~ 135 (142)
T 2lbm_A 134 EQ 135 (142)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 75
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.92 E-value=3.1e-10 Score=69.07 Aligned_cols=43 Identities=19% Similarity=0.510 Sum_probs=35.0
Q ss_pred ccccccCCC----ceeEecCCCCceecccccCccccCcCCCCCCCCCccC
Q psy5115 3 FHTLAVIEP----KFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCN 48 (171)
Q Consensus 3 ~~~~~~~~~----~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~ 48 (171)
.|..|.+++ +.||.||+|++|||..|+++.. .+.+.|+|+.|.
T Consensus 18 ~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~---vP~g~W~C~~C~ 64 (71)
T 2ku3_A 18 VCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY---IPEGQWLCRHCL 64 (71)
T ss_dssp SCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS---CCSSCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc---CCCCCcCCccCc
Confidence 577776553 6799999999999999998753 345789999996
No 76
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=98.92 E-value=3.9e-10 Score=91.95 Aligned_cols=41 Identities=34% Similarity=0.792 Sum_probs=36.6
Q ss_pred cCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccC
Q psy5115 8 VIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCN 48 (171)
Q Consensus 8 ~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~ 48 (171)
.+.+.+||+||.|..|||..|+|++....+..+.|+||.|.
T Consensus 52 ~n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~ 92 (528)
T 3pur_A 52 KKNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCV 92 (528)
T ss_dssp TTSTTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTH
T ss_pred CCcCCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCc
Confidence 45677899999999999999999998776667899999999
No 77
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=98.90 E-value=1.8e-09 Score=65.59 Aligned_cols=38 Identities=32% Similarity=0.741 Sum_probs=30.3
Q ss_pred CCceeEecCCCCceecccccCccccCcCCCC-CCCCCccC
Q psy5115 10 EPKFYICCDTCQDWFHGRCVGILQSEADNID-EYICPNCN 48 (171)
Q Consensus 10 ~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~-~~~Cp~C~ 48 (171)
+++.||.||+|+++||..|+++..... +.+ .|+||.|.
T Consensus 29 ~~~~ll~CD~C~~~yH~~Cl~Ppl~~~-P~g~~W~C~~C~ 67 (70)
T 3asl_A 29 DPDKQLMCDECDMAFHIYCLDPPLSSV-PSEDEWYCPECR 67 (70)
T ss_dssp CGGGEEECTTTCCEEEGGGSSSCCSSC-CSSSCCCCTTTS
T ss_pred CCCCEEEcCCCCCceecccCCCCcCCC-CCCCCcCCcCcc
Confidence 466799999999999999998543322 345 89999997
No 78
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.87 E-value=1e-09 Score=70.24 Aligned_cols=45 Identities=20% Similarity=0.384 Sum_probs=35.0
Q ss_pred ccccccCCC--ceeEecCCCCceecccccCccccCcCCCCCCCCCccC
Q psy5115 3 FHTLAVIEP--KFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCN 48 (171)
Q Consensus 3 ~~~~~~~~~--~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~ 48 (171)
.|.+|..++ +.||.||.|++|||..|+++... ..+.+.|+||.|.
T Consensus 18 ~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~-~~P~g~W~C~~C~ 64 (92)
T 2e6r_A 18 ICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLP-EIPRGIWRCPKCI 64 (92)
T ss_dssp CCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCS-SCCSSCCCCHHHH
T ss_pred CCccCCCcCCCCCEEEcCCCCchhccccCCCCcc-cCCCCCcCCccCc
Confidence 576776654 46999999999999999985333 2345789999996
No 79
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=4.5e-09 Score=64.90 Aligned_cols=44 Identities=23% Similarity=0.538 Sum_probs=32.6
Q ss_pred cccccC--CCceeEecCCCCceecccccCccccCcCCCC-CCCCCccC
Q psy5115 4 HTLAVI--EPKFYICCDTCQDWFHGRCVGILQSEADNID-EYICPNCN 48 (171)
Q Consensus 4 ~~~~~~--~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~-~~~Cp~C~ 48 (171)
|.++.. +++.||.||.|+++||..|+++.... .+.+ .|+||.|.
T Consensus 29 C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~-~P~g~~W~C~~C~ 75 (77)
T 2e6s_A 29 CRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDK-VPEEEYWYCPSCK 75 (77)
T ss_dssp CSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSS-CCCSSCCCCTTTC
T ss_pred CcCcCCcCCCCCEEEcCCCCccccccccCCCccC-CCCCCCcCCcCcc
Confidence 445543 45669999999999999999853332 2345 89999996
No 80
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.81 E-value=1.4e-09 Score=65.35 Aligned_cols=46 Identities=24% Similarity=0.572 Sum_probs=35.3
Q ss_pred ccccccCC----CceeEecCCCCceecccccCccccCc--CCCCCCCCCccC
Q psy5115 3 FHTLAVIE----PKFYICCDTCQDWFHGRCVGILQSEA--DNIDEYICPNCN 48 (171)
Q Consensus 3 ~~~~~~~~----~~~~i~C~~C~r~~H~~C~~~~~~~~--~~~~~~~Cp~C~ 48 (171)
.|.+|..+ ++.||.||+|+++||..|+++..... .+.+.|+|+.|.
T Consensus 8 ~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~ 59 (66)
T 2yt5_A 8 VCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCV 59 (66)
T ss_dssp CBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCc
Confidence 56667655 47799999999999999998743221 145689999997
No 81
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.80 E-value=4e-09 Score=69.09 Aligned_cols=44 Identities=18% Similarity=0.385 Sum_probs=35.3
Q ss_pred CccccccCCCceeEecC--CCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 2 KFHTLAVIEPKFYICCD--TCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 2 ~~~~~~~~~~~~~i~C~--~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
.+|..+.++ |.||.|| .|++|||..|+++.. .+.+.|+||.|..
T Consensus 16 ~~C~~C~~~-G~ll~CD~~~Cp~~fH~~Cl~L~~---~P~g~W~Cp~c~C 61 (107)
T 4gne_A 16 DYCFQCGDG-GELVMCDKKDCPKAYHLLCLNLTQ---PPYGKWECPWHQC 61 (107)
T ss_dssp SSCTTTCCC-SEEEECCSTTCCCEECTGGGTCSS---CCSSCCCCGGGBC
T ss_pred CCCCcCCCC-CcEeEECCCCCCcccccccCcCCc---CCCCCEECCCCCC
Confidence 468888855 5699999 899999999998653 2457899998873
No 82
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.80 E-value=1.2e-09 Score=69.33 Aligned_cols=43 Identities=19% Similarity=0.510 Sum_probs=35.1
Q ss_pred ccccccCCC----ceeEecCCCCceecccccCccccCcCCCCCCCCCccC
Q psy5115 3 FHTLAVIEP----KFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCN 48 (171)
Q Consensus 3 ~~~~~~~~~----~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~ 48 (171)
.|.+|.+++ +.||.||+|++|||..|+++.. .+.+.|+|+.|.
T Consensus 27 ~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~---vP~g~W~C~~C~ 73 (88)
T 2l43_A 27 VCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY---IPEGQWLCRHCL 73 (88)
T ss_dssp CCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS---CCSSCCCCHHHH
T ss_pred cCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc---cCCCceECcccc
Confidence 577777654 5799999999999999998753 345789999997
No 83
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.77 E-value=2.8e-09 Score=67.62 Aligned_cols=47 Identities=15% Similarity=0.379 Sum_probs=36.6
Q ss_pred CccccccCC----CceeEecCCCCceecccccCccccC---cCCCCCCCCCccC
Q psy5115 2 KFHTLAVIE----PKFYICCDTCQDWFHGRCVGILQSE---ADNIDEYICPNCN 48 (171)
Q Consensus 2 ~~~~~~~~~----~~~~i~C~~C~r~~H~~C~~~~~~~---~~~~~~~~Cp~C~ 48 (171)
.+|.+|..+ ++.||.||+|++.||..|+++.... ..+.+.|+|+.|.
T Consensus 17 ~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~ 70 (88)
T 1wev_A 17 LACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCT 70 (88)
T ss_dssp CSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHH
T ss_pred CcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCcccc
Confidence 367778766 3679999999999999999764321 1356789999997
No 84
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=98.70 E-value=1.7e-08 Score=62.20 Aligned_cols=37 Identities=30% Similarity=0.702 Sum_probs=28.9
Q ss_pred CceeEecCCCCceecccccCccccCcCCCCC-CCCCccC
Q psy5115 11 PKFYICCDTCQDWFHGRCVGILQSEADNIDE-YICPNCN 48 (171)
Q Consensus 11 ~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~-~~Cp~C~ 48 (171)
++.||.||.|+++||..|+++.-.. .+.+. |+|+.|+
T Consensus 38 ~~~ll~CD~C~~~yH~~Cl~PpL~~-~P~g~~W~C~~C~ 75 (77)
T 3shb_A 38 PDKQLMCDECDMAFHIYCLDPPLSS-VPSEDEWYCPECR 75 (77)
T ss_dssp GGGEEECTTTCCEEETTTSSSCCSS-CCSSSCCCCTTTC
T ss_pred CcceeEeCCCCCccCcccCCCcccC-CCCCCceECcCcc
Confidence 4569999999999999999754332 23445 9999996
No 85
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=98.69 E-value=3.4e-09 Score=71.46 Aligned_cols=64 Identities=16% Similarity=0.352 Sum_probs=45.7
Q ss_pred CccccccCCCceeEecCCCCceecccccCcccc-----C-cCCCCCCCCCccCCCCcccccccCCChhHHHHHHHHHHHH
Q psy5115 2 KFHTLAVIEPKFYICCDTCQDWFHGRCVGILQS-----E-ADNIDEYICPNCNNSSSNLANMKNLTPRDFESLRKLMKQI 75 (171)
Q Consensus 2 ~~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~-----~-~~~~~~~~Cp~C~~~~~~~~~~~~l~~~~~~~~~~~l~~l 75 (171)
.+|+.|.|+++ +++||.|+|+||..|+.+... . ..+.+.|.|+.|... -...++..|..+++.|
T Consensus 58 ~~C~vC~dGG~-LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~---------pl~~L~~~C~~v~~~~ 127 (129)
T 3ql9_A 58 EQCRWCAEGGN-LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE---------PLLDLVTACNSVYENL 127 (129)
T ss_dssp SSCTTTCCCSE-EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG---------GGHHHHHHHHHHHTTC
T ss_pred CcCeecCCCCe-eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH---------HHHHHHHHHHHHHHHh
Confidence 47999998866 999999999999999864311 1 125678999999632 2245566677766543
No 86
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.60 E-value=5e-08 Score=64.66 Aligned_cols=45 Identities=20% Similarity=0.395 Sum_probs=33.9
Q ss_pred ccccccC---CCceeEecCCCCceecccccCccccCcCCCCCCCCCccC
Q psy5115 3 FHTLAVI---EPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCN 48 (171)
Q Consensus 3 ~~~~~~~---~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~ 48 (171)
.|..+.+ +++.||.||.|+++||..|+.+... ..+.+.|+|+.|+
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~-~~P~~~W~C~~C~ 110 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLT-RMPKGMWICQICR 110 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCS-SCCSSCCCCTTTS
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCC-CCCCCCeECCCCC
Confidence 4555554 3467999999999999999965322 2355689999997
No 87
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.53 E-value=4.6e-08 Score=65.03 Aligned_cols=45 Identities=18% Similarity=0.352 Sum_probs=33.9
Q ss_pred ccccccCC--CceeEecCCCCceecccccCccccCcCCCCCCCCCccC
Q psy5115 3 FHTLAVIE--PKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCN 48 (171)
Q Consensus 3 ~~~~~~~~--~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~ 48 (171)
.|..+... ++.||.||+|+++||..|+++... ..+.+.|+|+.|.
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~-~~P~g~W~C~~C~ 106 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVA-EPPEGSWSCHLCW 106 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCS-SCCSSCCCCHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCcc-CCCCCCeECcccc
Confidence 35555543 566999999999999999985322 3355789999996
No 88
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.36 E-value=9.6e-08 Score=65.16 Aligned_cols=36 Identities=25% Similarity=0.812 Sum_probs=28.9
Q ss_pred eEecCCCCceecccccCcccc------CcCCCCCCCCCccCC
Q psy5115 14 YICCDTCQDWFHGRCVGILQS------EADNIDEYICPNCNN 49 (171)
Q Consensus 14 ~i~C~~C~r~~H~~C~~~~~~------~~~~~~~~~Cp~C~~ 49 (171)
||+||.|.+|||..|+++++. .......|.||.|..
T Consensus 2 mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~ 43 (140)
T 2ku7_A 2 MMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTE 43 (140)
T ss_dssp CCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTT
T ss_pred ccccccCCCccCCcccccCHHHHHHHhhccccceeeCccccc
Confidence 899999999999999998752 222344799999983
No 89
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.30 E-value=3.7e-07 Score=60.33 Aligned_cols=45 Identities=20% Similarity=0.441 Sum_probs=32.9
Q ss_pred cccccCCC--ceeEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 4 HTLAVIEP--KFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 4 ~~~~~~~~--~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
|..+...+ ..|+.||.|+++||..|+.+... ..+.+.|+||.|..
T Consensus 57 C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~-~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 57 CQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMK-SVPTNGWKCKNCRI 103 (111)
T ss_dssp CTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCS-SCCSSCCCCHHHHC
T ss_pred ccccCccCCCCCeeECCCCCcHHhHHhcCCccc-cCCCCCcCCcCCcC
Confidence 44444433 35999999999999999975433 23457899999973
No 90
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=98.26 E-value=2.5e-07 Score=61.71 Aligned_cols=44 Identities=18% Similarity=0.375 Sum_probs=33.5
Q ss_pred cccCCCceeEecCCCCceecccccCccccC---cCCCCCCCCCccCC
Q psy5115 6 LAVIEPKFYICCDTCQDWFHGRCVGILQSE---ADNIDEYICPNCNN 49 (171)
Q Consensus 6 ~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~---~~~~~~~~Cp~C~~ 49 (171)
..++.+..|++|+.|.+|||..|+++.... .+.++.|.||.|..
T Consensus 67 ~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 67 ETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp HHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred cccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 345667779999999999999999875432 23455699999974
No 91
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.20 E-value=1.5e-06 Score=57.34 Aligned_cols=45 Identities=22% Similarity=0.521 Sum_probs=35.0
Q ss_pred ccccccCCCc--eeEecCCCCceecccccCccccCcCCCCCCCCCccC
Q psy5115 3 FHTLAVIEPK--FYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCN 48 (171)
Q Consensus 3 ~~~~~~~~~~--~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~ 48 (171)
.|..+.++++ .||.|+.|++.||..|+++.... .....|.|+.|.
T Consensus 9 ~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~-~~~~~W~C~~C~ 55 (111)
T 2ysm_A 9 NCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTP-LKRAGWQCPECK 55 (111)
T ss_dssp CBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCT-TTSTTCCCTTTC
T ss_pred CCcCCCCCCCCcCCeECCCCCCCcChHHhCCcccc-ccccCccCCcCC
Confidence 5777777654 36999999999999999876542 235689999986
No 92
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=98.17 E-value=3e-06 Score=59.92 Aligned_cols=72 Identities=15% Similarity=0.213 Sum_probs=44.6
Q ss_pred ccccccCCCceeEecCCCCceecccccCccccCcCC---CCCCCCCccCCCCcccccccCCChhHHHHHHHHHHHHH
Q psy5115 3 FHTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADN---IDEYICPNCNNSSSNLANMKNLTPRDFESLRKLMKQIQ 76 (171)
Q Consensus 3 ~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~---~~~~~Cp~C~~~~~~~~~~~~l~~~~~~~~~~~l~~l~ 76 (171)
||..+++-+..|++|+.|.+|||..|+........+ .=.+.|..|......... ++.....+.+.-+|-.|.
T Consensus 9 YCG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~g~E~f~--R~~~~w~~v~~laLyNL~ 83 (177)
T 3rsn_A 9 DEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSGNTYFL--RKQANLKEMCLSALANLT 83 (177)
T ss_dssp --CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTSTTSSCEEE--ECCCCHHHHHHHHHHHHH
T ss_pred EcCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCCCCcceeE--eccCCHHHHHHHHHHhhh
Confidence 678888888889999999999999999643221111 115779999754433222 334445555554444443
No 93
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.94 E-value=2.1e-06 Score=56.89 Aligned_cols=38 Identities=21% Similarity=0.500 Sum_probs=29.2
Q ss_pred CceeEecCCCCceecccccCccccC--cCCCCCCCCCccC
Q psy5115 11 PKFYICCDTCQDWFHGRCVGILQSE--ADNIDEYICPNCN 48 (171)
Q Consensus 11 ~~~~i~C~~C~r~~H~~C~~~~~~~--~~~~~~~~Cp~C~ 48 (171)
++.||.|+.|++.||..|+++.... ......|.|+.|.
T Consensus 20 ~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 20 PEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 4679999999999999999875321 1134579999885
No 94
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.87 E-value=3.1e-06 Score=55.95 Aligned_cols=39 Identities=21% Similarity=0.484 Sum_probs=30.1
Q ss_pred CCceeEecCCCCceecccccCccccCc--CCCCCCCCCccC
Q psy5115 10 EPKFYICCDTCQDWFHGRCVGILQSEA--DNIDEYICPNCN 48 (171)
Q Consensus 10 ~~~~~i~C~~C~r~~H~~C~~~~~~~~--~~~~~~~Cp~C~ 48 (171)
.++.||.|+.|++.||..|+++.+... .....|.|+.|+
T Consensus 22 ~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 22 KPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 456799999999999999997643221 135689999996
No 95
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=97.13 E-value=0.00027 Score=43.40 Aligned_cols=46 Identities=22% Similarity=0.512 Sum_probs=31.1
Q ss_pred cccccc--CCCceeEecCCCCceecccccCc---cc--------cCcCCCCCCCCCccCC
Q psy5115 3 FHTLAV--IEPKFYICCDTCQDWFHGRCVGI---LQ--------SEADNIDEYICPNCNN 49 (171)
Q Consensus 3 ~~~~~~--~~~~~~i~C~~C~r~~H~~C~~~---~~--------~~~~~~~~~~Cp~C~~ 49 (171)
.|.+|. +. +.++.|-.|.|+||..|... .. .......-|.|+.|.+
T Consensus 17 ~C~VC~~~t~-~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 17 MCDVCEVWTA-ESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCTTTCCCCS-SCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred ccCccccccc-cceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 466665 43 44999999999999999622 11 1112345799999973
No 96
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=96.11 E-value=0.0022 Score=44.42 Aligned_cols=49 Identities=22% Similarity=0.449 Sum_probs=36.7
Q ss_pred CccccccCCCceeEecC--CCCceecccccCcccc-----CcCCCCCCCCCccCCCC
Q psy5115 2 KFHTLAVIEPKFYICCD--TCQDWFHGRCVGILQS-----EADNIDEYICPNCNNSS 51 (171)
Q Consensus 2 ~~~~~~~~~~~~~i~C~--~C~r~~H~~C~~~~~~-----~~~~~~~~~Cp~C~~~~ 51 (171)
.||+-|-+++ .++.|+ .|.|.|...|+..... .....+.|.|=.|...+
T Consensus 80 ~yC~wC~~Gg-~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~ 135 (159)
T 3a1b_A 80 SYCTICCGGR-EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 135 (159)
T ss_dssp SSCTTTSCCS-EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred ceeeEecCCC-eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCcc
Confidence 4788888876 499999 8999999999722211 12356799999998544
No 97
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=95.24 E-value=0.0045 Score=48.92 Aligned_cols=49 Identities=18% Similarity=0.494 Sum_probs=36.9
Q ss_pred CccccccCCCceeEecC--CCCceecccccCccccC-----cCCCCCCCCCccCCCC
Q psy5115 2 KFHTLAVIEPKFYICCD--TCQDWFHGRCVGILQSE-----ADNIDEYICPNCNNSS 51 (171)
Q Consensus 2 ~~~~~~~~~~~~~i~C~--~C~r~~H~~C~~~~~~~-----~~~~~~~~Cp~C~~~~ 51 (171)
.||+-|-+++. ++.|| .|.|+|...|+...... ....+.|.|=.|...+
T Consensus 94 ~yCr~C~~Gg~-l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 94 SYCSICCSGET-LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp CSCTTTCCCSS-CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred ccceEcCCCCe-EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 47888988765 99999 99999999997332211 1245789999998544
No 98
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=93.87 E-value=0.053 Score=29.46 Aligned_cols=34 Identities=18% Similarity=0.416 Sum_probs=23.2
Q ss_pred EecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 15 ICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 15 i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
-+|..|+-+|...=-..+ ...+.++.|.||.|..
T Consensus 5 y~C~vCGyvyd~~~Gd~t-~f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 5 YVCNVCGYEYDPAEHDNV-PFDQLPDDWCCPVCGV 38 (46)
T ss_dssp EEETTTCCEECGGGGTTC-CGGGSCTTCBCTTTCC
T ss_pred EECCCCCeEEeCCcCCCc-chhhCCCCCcCcCCCC
Confidence 478899988875422222 2345688899999984
No 99
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=93.05 E-value=0.067 Score=29.60 Aligned_cols=40 Identities=20% Similarity=0.406 Sum_probs=26.3
Q ss_pred cccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccC
Q psy5115 4 HTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCN 48 (171)
Q Consensus 4 ~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~ 48 (171)
|...+.++...+.-..|...||..|+..-.. ....||.|+
T Consensus 11 C~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-----~~~~CP~Cr 50 (55)
T 1iym_A 11 CLAELEDGEEARFLPRCGHGFHAECVDMWLG-----SHSTCPLCR 50 (55)
T ss_dssp TCCCCCTTSCCEECSSSCCEECTTHHHHTTT-----TCCSCSSSC
T ss_pred CCccccCCCceEECCCCCCcccHHHHHHHHH-----cCCcCcCCC
Confidence 4444444444666667999999999843211 135899997
No 100
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=93.01 E-value=0.12 Score=29.14 Aligned_cols=36 Identities=22% Similarity=0.516 Sum_probs=24.1
Q ss_pred EecCCCCceeccccc----Cc--cccCcCCCCCCCCCccCCC
Q psy5115 15 ICCDTCQDWFHGRCV----GI--LQSEADNIDEYICPNCNNS 50 (171)
Q Consensus 15 i~C~~C~r~~H~~C~----~~--~~~~~~~~~~~~Cp~C~~~ 50 (171)
-.|..|.-+|...=- ++ .....+.++.|.||.|...
T Consensus 4 y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 4 YTCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVG 45 (54)
T ss_dssp EEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred eECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCCc
Confidence 478899988876531 11 1123456889999999853
No 101
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=92.29 E-value=0.076 Score=33.82 Aligned_cols=38 Identities=21% Similarity=0.529 Sum_probs=25.0
Q ss_pred cCCCceeEecCCCCceecccccCccccCcCCCCCCCCCcc
Q psy5115 8 VIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNC 47 (171)
Q Consensus 8 ~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C 47 (171)
+.....+|||+.|.+|=-.. .+.. .....++.|+|..-
T Consensus 22 ~~~~~~WVQCD~C~KWRrLP-~~~~-~~~~~pd~W~C~mN 59 (100)
T 2l7p_A 22 YSTESAWVRCDDCFKWRRIP-ASVV-GSIDESSRWICMNN 59 (100)
T ss_dssp CSSSSEEEECTTTCCEEEEC-HHHH-TTSTTSSCCCGGGS
T ss_pred CCCCCeEEeeCCCCccccCC-hhHc-cccCCCCCceeCCC
Confidence 44467799999999996554 2221 11235689999764
No 102
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=92.02 E-value=0.18 Score=28.39 Aligned_cols=38 Identities=21% Similarity=0.424 Sum_probs=24.1
Q ss_pred EecCCCCceeccccc----Cc--cccCcCCCCCCCCCccCCCCc
Q psy5115 15 ICCDTCQDWFHGRCV----GI--LQSEADNIDEYICPNCNNSSS 52 (171)
Q Consensus 15 i~C~~C~r~~H~~C~----~~--~~~~~~~~~~~~Cp~C~~~~~ 52 (171)
-.|..|.-+|...=- ++ -....+.++.|.||.|.....
T Consensus 4 y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga~K~ 47 (55)
T 2v3b_B 4 WQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVGKI 47 (55)
T ss_dssp EEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCCCGG
T ss_pred EEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCCCHH
Confidence 468889888876431 11 112344688999999985433
No 103
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=92.02 E-value=0.19 Score=30.74 Aligned_cols=39 Identities=26% Similarity=0.464 Sum_probs=25.7
Q ss_pred eEecCCCCceeccccc----Cc--cccCcCCCCCCCCCccCCCCc
Q psy5115 14 YICCDTCQDWFHGRCV----GI--LQSEADNIDEYICPNCNNSSS 52 (171)
Q Consensus 14 ~i~C~~C~r~~H~~C~----~~--~~~~~~~~~~~~Cp~C~~~~~ 52 (171)
.-.|..|.-+|...=- ++ -.+..+.++.|.||.|.....
T Consensus 27 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~K~ 71 (81)
T 2kn9_A 27 LFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKS 71 (81)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCCGG
T ss_pred eEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCCHH
Confidence 5779999988876431 11 112345688999999985443
No 104
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=91.95 E-value=0.27 Score=27.35 Aligned_cols=36 Identities=28% Similarity=0.504 Sum_probs=22.5
Q ss_pred EecCCCCceeccccc----Cc--cccCcCCCCCCCCCccCCC
Q psy5115 15 ICCDTCQDWFHGRCV----GI--LQSEADNIDEYICPNCNNS 50 (171)
Q Consensus 15 i~C~~C~r~~H~~C~----~~--~~~~~~~~~~~~Cp~C~~~ 50 (171)
-.|..|.-+|...=- ++ .....+.++.|.||.|...
T Consensus 4 y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 4 YVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGAS 45 (52)
T ss_dssp EECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCCC
T ss_pred EEeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCCCCCCc
Confidence 468888877764321 11 1123446889999999853
No 105
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.23 E-value=0.069 Score=32.59 Aligned_cols=38 Identities=18% Similarity=0.380 Sum_probs=22.5
Q ss_pred CCCceeEe---cCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 9 IEPKFYIC---CDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 9 ~~~~~~i~---C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
++++.++. |.+...+||..|+..=.. ..+...||.|+.
T Consensus 26 ~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~---~~~~~~CplCr~ 66 (80)
T 2d8s_A 26 DDESPLITPCHCTGSLHFVHQACLQQWIK---SSDTRCCELCKY 66 (80)
T ss_dssp CSSSCEECSSSCCSSSCCEETTHHHHHHH---HHCCSBCSSSCC
T ss_pred cCCCeeEeccccCCcCCeeCHHHHHHHHh---hCCCCCCCCCCC
Confidence 33444542 334469999999832111 122469999984
No 106
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=90.70 E-value=0.28 Score=29.02 Aligned_cols=34 Identities=18% Similarity=0.394 Sum_probs=22.0
Q ss_pred CCceeEecC--CCCceecccccCccccCcCCCCCCCCCc
Q psy5115 10 EPKFYICCD--TCQDWFHGRCVGILQSEADNIDEYICPN 46 (171)
Q Consensus 10 ~~~~~i~C~--~C~r~~H~~C~~~~~~~~~~~~~~~Cp~ 46 (171)
....+|||| .|.+|=-..= ++.. ...++.|+|..
T Consensus 14 ~~~~WVQCd~p~C~KWR~LP~-~~~~--~~lpd~W~C~m 49 (69)
T 2e61_A 14 QCLVWVQCSFPNCGKWRRLCG-NIDP--SVLPDNWSCDQ 49 (69)
T ss_dssp CCCCEEECSSTTTCCEEECCS-SCCT--TTSCTTCCGGG
T ss_pred CCCeEEEeCccccCcccCCcc-cccc--ccCCCcCEeCC
Confidence 345699999 9999955422 1111 22567999975
No 107
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=90.56 E-value=0.29 Score=29.00 Aligned_cols=37 Identities=24% Similarity=0.543 Sum_probs=24.1
Q ss_pred eEecCCCCceeccccc----Cc--cccCcCCCCCCCCCccCCC
Q psy5115 14 YICCDTCQDWFHGRCV----GI--LQSEADNIDEYICPNCNNS 50 (171)
Q Consensus 14 ~i~C~~C~r~~H~~C~----~~--~~~~~~~~~~~~Cp~C~~~ 50 (171)
.-.|..|.-+|...=- ++ -.+..+.++.|.||.|...
T Consensus 7 ~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 7 KYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp CEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred eEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCC
Confidence 4678999988875431 11 1123446889999999853
No 108
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=90.08 E-value=0.26 Score=27.40 Aligned_cols=36 Identities=25% Similarity=0.579 Sum_probs=22.7
Q ss_pred EecCCCCceeccccc----Cc--cccCcCCCCCCCCCccCCC
Q psy5115 15 ICCDTCQDWFHGRCV----GI--LQSEADNIDEYICPNCNNS 50 (171)
Q Consensus 15 i~C~~C~r~~H~~C~----~~--~~~~~~~~~~~~Cp~C~~~ 50 (171)
-.|..|.-+|...=- ++ .....+.++.|.||.|...
T Consensus 3 ~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 3 LSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAP 44 (52)
T ss_dssp EEESSSSCEEETTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred EEeCCCCeEECCCcCCcccCcCCCCCHhHCCCCCcCCCCCCC
Confidence 468888888765421 11 1123456889999999843
No 109
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=89.76 E-value=0.097 Score=28.87 Aligned_cols=34 Identities=24% Similarity=0.568 Sum_probs=23.2
Q ss_pred CCceeEecCCCCceecccccCccccCcCCCCCCCCCccC
Q psy5115 10 EPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCN 48 (171)
Q Consensus 10 ~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~ 48 (171)
+++..+..-.|...||..|+..-... ...||.|+
T Consensus 17 ~~~~~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr 50 (55)
T 2ecm_A 17 TSRVVAHVLPCGHLLHRTCYEEMLKE-----GYRCPLCS 50 (55)
T ss_dssp TTTSCEEECTTSCEEETTHHHHHHHH-----TCCCTTSC
T ss_pred CCCcCeEecCCCCcccHHHHHHHHHc-----CCcCCCCC
Confidence 33345666779999999998432111 26899997
No 110
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=89.36 E-value=0.39 Score=29.70 Aligned_cols=38 Identities=24% Similarity=0.500 Sum_probs=24.8
Q ss_pred eEecCCCCceeccccc----Cc--cccCcCCCCCCCCCccCCCC
Q psy5115 14 YICCDTCQDWFHGRCV----GI--LQSEADNIDEYICPNCNNSS 51 (171)
Q Consensus 14 ~i~C~~C~r~~H~~C~----~~--~~~~~~~~~~~~Cp~C~~~~ 51 (171)
.-.|..|.-+|...=- ++ -....+.++.|.||.|....
T Consensus 35 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~K 78 (87)
T 1s24_A 35 KWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGATK 78 (87)
T ss_dssp EEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCCG
T ss_pred eEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCCH
Confidence 5679999988876421 11 11234568899999998543
No 111
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.03 E-value=0.073 Score=32.36 Aligned_cols=35 Identities=20% Similarity=0.606 Sum_probs=22.6
Q ss_pred CCceeEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 10 EPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 10 ~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
+++..+.-..|...||..|+..=-. . .-.||.|+.
T Consensus 38 ~~~~~~~~~~C~H~FH~~Ci~~Wl~--~---~~~CP~CR~ 72 (81)
T 2ecl_A 38 QEDCVVVWGECNHSFHNCCMSLWVK--Q---NNRCPLCQQ 72 (81)
T ss_dssp TTTCCEEEETTSCEEEHHHHHHHTT--T---CCBCTTTCC
T ss_pred CCceEEEeCCCCCccChHHHHHHHH--h---CCCCCCcCC
Confidence 3443444457999999999843211 1 238999983
No 112
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=87.78 E-value=1.1 Score=28.47 Aligned_cols=44 Identities=20% Similarity=0.347 Sum_probs=25.7
Q ss_pred cccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCCC
Q psy5115 4 HTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNS 50 (171)
Q Consensus 4 ~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~~ 50 (171)
|..|.+.-...+. -.|+..||..|+...-. .......||.|+..
T Consensus 24 C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~--~~~~~~~CP~Cr~~ 67 (112)
T 1jm7_A 24 CPICLELIKEPVS-TKCDHIFCKFCMLKLLN--QKKGPSQCPLCKND 67 (112)
T ss_dssp CSSSCCCCSSCCB-CTTSCCCCSHHHHHHHH--SSSSSCCCTTTSCC
T ss_pred CcccChhhcCeEE-CCCCCHHHHHHHHHHHH--hCCCCCCCcCCCCc
Confidence 4444443322222 37999999999843211 12335789999953
No 113
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=87.03 E-value=0.16 Score=32.65 Aligned_cols=36 Identities=19% Similarity=0.434 Sum_probs=22.7
Q ss_pred eEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 14 YICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 14 ~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
.+.--.|..+||..|+..-...........||.|+.
T Consensus 55 ~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~ 90 (114)
T 1v87_A 55 VGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKT 90 (114)
T ss_dssp CEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCC
T ss_pred ceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCC
Confidence 444567999999999843211111123569999984
No 114
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=86.73 E-value=0.29 Score=30.33 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=20.7
Q ss_pred cccccCC-CceeEecCC--CCceeccccc
Q psy5115 4 HTLAVIE-PKFYICCDT--CQDWFHGRCV 29 (171)
Q Consensus 4 ~~~~~~~-~~~~i~C~~--C~r~~H~~C~ 29 (171)
|..|... .|--|+|.. |.+.||..|.
T Consensus 20 C~iC~~~~~GAciqC~~~~C~~~fHv~CA 48 (87)
T 2lq6_A 20 CYLCKQKGVGASIQCHKANCYTAFHVTCA 48 (87)
T ss_dssp BTTTTBCCSSCEEECSCTTTCCEEEHHHH
T ss_pred CcCCCCCCCcEeEecCCCCCCCcCcHHHH
Confidence 5566554 477999985 9999999996
No 115
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=86.52 E-value=0.36 Score=30.38 Aligned_cols=44 Identities=16% Similarity=0.329 Sum_probs=30.3
Q ss_pred ccccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCCC
Q psy5115 3 FHTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNS 50 (171)
Q Consensus 3 ~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~~ 50 (171)
.|..|.+.-...+.|..|+..||..|+..--... ...||.|+..
T Consensus 24 ~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~----~~~CP~Cr~~ 67 (100)
T 3lrq_A 24 RCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ----RAQCPHCRAP 67 (100)
T ss_dssp BCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT----CSBCTTTCCB
T ss_pred CCccCCccccCccccCCCCChhhHHHHHHHHHHC----cCCCCCCCCc
Confidence 3556666655578889999999999984321111 2689999943
No 116
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.59 E-value=0.55 Score=27.31 Aligned_cols=43 Identities=14% Similarity=0.346 Sum_probs=26.4
Q ss_pred cccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 4 HTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 4 ~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
|..|.+.-...+.- .|...||..|+..... .......||.|+.
T Consensus 23 C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~--~~~~~~~CP~Cr~ 65 (73)
T 2ysl_A 23 CPICLDILQKPVTI-DCGHNFCLKCITQIGE--TSCGFFKCPLCKT 65 (73)
T ss_dssp CTTTCSBCSSEEEC-TTCCEEEHHHHHHHCS--SSCSCCCCSSSCC
T ss_pred eccCCcccCCeEEc-CCCChhhHHHHHHHHH--cCCCCCCCCCCCC
Confidence 44455443333333 8999999999843211 1234679999984
No 117
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=84.33 E-value=0.43 Score=35.23 Aligned_cols=45 Identities=27% Similarity=0.421 Sum_probs=32.0
Q ss_pred CccccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 2 KFHTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 2 ~~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
+.|..|++==..=+.|..|..-||..|+..-- .....-.||.|..
T Consensus 181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~---~~~~~~~CP~C~~ 225 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYF---QSNAEPRCPHCND 225 (238)
T ss_dssp CBCTTTCSBCSSCEECSSSCCEECHHHHHHHT---TTCSSCBCTTTCC
T ss_pred CcCcchhhHHhCCcccCccChHHHHHHHHHHH---HhCCCCCCCCCCC
Confidence 45777777655558899999999999983311 1223468999984
No 118
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.87 E-value=0.54 Score=28.14 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=27.4
Q ss_pred ccccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 3 FHTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 3 ~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
.|..|++-=..=+.|..|..-||..|+.-- .. ....-.||.|+.
T Consensus 17 ~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kW--l~-~~~~~~CP~Cr~ 60 (74)
T 2ct0_A 17 ICNICHSLLIQGQSCETCGIRMHLPCVAKY--FQ-SNAEPRCPHCND 60 (74)
T ss_dssp BCSSSCCBCSSSEECSSSCCEECHHHHHHH--ST-TCSSCCCTTTCS
T ss_pred cCcchhhHcccCCccCCCCchhhHHHHHHH--HH-hcCCCCCCCCcC
Confidence 344455443333678899999999998321 11 111258999984
No 119
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=80.50 E-value=0.45 Score=29.36 Aligned_cols=36 Identities=25% Similarity=0.588 Sum_probs=22.1
Q ss_pred cCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 8 VIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 8 ~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
+..+...+.- .|...||..|+..--. ....||.|+.
T Consensus 50 ~~~~~~~~~l-~C~H~Fh~~Ci~~wl~-----~~~~CP~Cr~ 85 (91)
T 2l0b_A 50 YVKGDVATEL-PCHHYFHKPCVSIWLQ-----KSGTCPVCRC 85 (91)
T ss_dssp CCTTCEEEEE-TTTEEEEHHHHHHHHT-----TTCBCTTTCC
T ss_pred hcCCCcEEec-CCCChHHHHHHHHHHH-----cCCcCcCcCc
Confidence 3333334333 4999999999843211 1348999983
No 120
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.77 E-value=0.57 Score=27.41 Aligned_cols=36 Identities=25% Similarity=0.528 Sum_probs=22.0
Q ss_pred cCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 8 VIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 8 ~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
+..+..++.. .|...||..|+..-... ...||.|+.
T Consensus 25 ~~~~~~~~~~-~C~H~f~~~Ci~~~~~~-----~~~CP~Cr~ 60 (74)
T 2ep4_A 25 FKPRDELGIC-PCKHAFHRKCLIKWLEV-----RKVCPLCNM 60 (74)
T ss_dssp CCSSSCEEEE-TTTEEEEHHHHHHHHHH-----CSBCTTTCC
T ss_pred cCCCCcEEEc-CCCCEecHHHHHHHHHc-----CCcCCCcCc
Confidence 3333334333 59999999998432111 238999984
No 121
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.44 E-value=0.47 Score=27.92 Aligned_cols=29 Identities=28% Similarity=0.637 Sum_probs=19.6
Q ss_pred ecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 16 CCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 16 ~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
..-.|...||..|+..-... ...||.|+.
T Consensus 40 ~~l~C~H~fh~~Ci~~w~~~-----~~~CP~Cr~ 68 (75)
T 1x4j_A 40 RVLPCNHEFHAKCVDKWLKA-----NRTCPICRA 68 (75)
T ss_dssp EEETTTEEEETTHHHHHHHH-----CSSCTTTCC
T ss_pred EEECCCCHhHHHHHHHHHHc-----CCcCcCcCC
Confidence 33359999999998432111 258999983
No 122
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=79.02 E-value=1.6 Score=28.04 Aligned_cols=29 Identities=14% Similarity=0.314 Sum_probs=22.2
Q ss_pred EecCCCCceecccccCccccCcCCCCCCCC
Q psy5115 15 ICCDTCQDWFHGRCVGILQSEADNIDEYIC 44 (171)
Q Consensus 15 i~C~~C~r~~H~~C~~~~~~~~~~~~~~~C 44 (171)
+.|..|++.||..|...... ....+.|+|
T Consensus 70 ~~C~~Cp~sfC~~c~~g~l~-~~~~~~~~c 98 (107)
T 4gne_A 70 SFCEFCPHSFCKDHEKGALV-PSALEGRLC 98 (107)
T ss_dssp EECSSSSCEECTTTCTTSCE-ECTTTTCEE
T ss_pred cCcCCCCcchhhhccCCcce-ecCCCCcee
Confidence 88999999999999955433 335667876
No 123
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=78.59 E-value=1.6 Score=25.72 Aligned_cols=26 Identities=27% Similarity=0.740 Sum_probs=18.7
Q ss_pred CCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 19 TCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 19 ~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
.|...||..|+..-.. ....||.|+.
T Consensus 35 ~C~H~fc~~Ci~~~~~-----~~~~CP~Cr~ 60 (78)
T 2ect_A 35 PCNHLFHDSCIVPWLE-----QHDSCPVCRK 60 (78)
T ss_dssp TTSCEEETTTTHHHHT-----TTCSCTTTCC
T ss_pred CCCCeecHHHHHHHHH-----cCCcCcCcCC
Confidence 5899999999843211 1258999984
No 124
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=77.02 E-value=2.3 Score=27.71 Aligned_cols=56 Identities=14% Similarity=0.353 Sum_probs=33.4
Q ss_pred CceecccccCccccCcCCCCCCCCCccCCCCcccccccCCChhHHHHHHHHHHHHHhCcCC
Q psy5115 21 QDWFHGRCVGILQSEADNIDEYICPNCNNSSSNLANMKNLTPRDFESLRKLMKQIQAHKSA 81 (171)
Q Consensus 21 ~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~~~~ 81 (171)
.+|||..|.............+. ...........|..+++..+...+..+.....+
T Consensus 48 ~~W~H~~Cf~~k~~~~r~~~~~~-----~~~~~i~G~~~L~~eDQ~~I~~~i~~~~~~~~~ 103 (117)
T 1uw0_A 48 KEWYHIKCMFEKLERARATTKKI-----EDLTELEGWEELEDNEKEQITQHIADLSSKAAG 103 (117)
T ss_dssp CCBCCHHHHHHHHHHSCSSSCCS-----CTTSSSBSTTTSCHHHHHHHHHHHHHHHCCSSS
T ss_pred CeeECcccchhHHhhhhhhccCC-----CChHHCcChHHCCHHHHHHHHHHHHHhhccCCC
Confidence 68999999742111000000010 112234445678999999999999998876555
No 125
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=76.79 E-value=0.66 Score=31.89 Aligned_cols=43 Identities=16% Similarity=0.352 Sum_probs=29.2
Q ss_pred ccccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 3 FHTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 3 ~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
.|..|.+.-...+....|+.+||..|+...-. .....||.|+.
T Consensus 56 ~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~ 98 (165)
T 2ckl_B 56 MCPICLDMLKNTMTTKECLHRFCADCIITALR----SGNKECPTCRK 98 (165)
T ss_dssp BCTTTSSBCSSEEEETTTCCEEEHHHHHHHHH----TTCCBCTTTCC
T ss_pred CCcccChHhhCcCEeCCCCChhHHHHHHHHHH----hCcCCCCCCCC
Confidence 35566665555666678999999999843211 12468999984
No 126
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=75.73 E-value=0.88 Score=26.02 Aligned_cols=41 Identities=20% Similarity=0.401 Sum_probs=26.1
Q ss_pred cccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 4 HTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 4 ~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
|..|.+.-..-+.--.|...||..|+..-.. ....||.|+.
T Consensus 8 C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~-----~~~~CP~Cr~ 48 (68)
T 1chc_A 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIR-----QNPTCPLCKV 48 (68)
T ss_dssp CSSCCSCCCSCEEETTTTEEESTTHHHHHHH-----HSCSTTTTCC
T ss_pred CeeCCccccCCcEecCCCCeeHHHHHHHHHh-----CcCcCcCCCh
Confidence 5555555443334557999999999843211 1258999984
No 127
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=75.24 E-value=6.4 Score=24.10 Aligned_cols=35 Identities=26% Similarity=0.525 Sum_probs=27.9
Q ss_pred ceeEecCCCC-ceecccccCccccCcCCCCCCCCCccCCC
Q psy5115 12 KFYICCDTCQ-DWFHGRCVGILQSEADNIDEYICPNCNNS 50 (171)
Q Consensus 12 ~~~i~C~~C~-r~~H~~C~~~~~~~~~~~~~~~Cp~C~~~ 50 (171)
=.+|.|..|. .-.|..|..+. ...+.|.|..|...
T Consensus 44 W~L~lC~~Cgs~gtH~~Cs~l~----~~~~~weC~~C~~v 79 (85)
T 1weq_A 44 WRLILCATCGSHGTHRDCSSLR----PNSKKWECNECLPA 79 (85)
T ss_dssp TBCEECSSSCCCEECSGGGTCC----TTCSCCCCTTTSCC
T ss_pred EEEEeCcccCCchhHHHHhCCc----CCCCCEECCcCccc
Confidence 3499999997 88999999764 24558999999843
No 128
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=74.93 E-value=1 Score=26.40 Aligned_cols=43 Identities=16% Similarity=0.340 Sum_probs=25.8
Q ss_pred cccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 4 HTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 4 ~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
|..|.+.-...+.-..|...||..|+..... ..+...||.|+.
T Consensus 18 C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~---~~~~~~CP~Cr~ 60 (74)
T 2yur_A 18 CLICKDIMTDAVVIPCCGNSYCDECIRTALL---ESDEHTCPTCHQ 60 (74)
T ss_dssp CSSSCCCCTTCEECSSSCCEECTTHHHHHHH---HSSSSCCSSSCC
T ss_pred CcCCChHHhCCeEcCCCCCHHHHHHHHHHHH---hcCCCcCCCCCC
Confidence 3344443333444445999999999843221 122468999985
No 129
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.19 E-value=0.87 Score=27.44 Aligned_cols=29 Identities=24% Similarity=0.618 Sum_probs=20.0
Q ss_pred CCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 19 TCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 19 ~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
.|...||..|+..... .......||.|+.
T Consensus 36 ~CgH~fC~~Ci~~~~~--~~~~~~~CP~Cr~ 64 (88)
T 2ct2_A 36 HCGHTICRQCLEKLLA--SSINGVRCPFCSK 64 (88)
T ss_dssp SSSCEEEHHHHHHHHH--HCSSCBCCTTTCC
T ss_pred CCCChhhHHHHHHHHH--cCCCCcCCCCCCC
Confidence 6999999999843211 1123579999984
No 130
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=73.91 E-value=5 Score=24.69 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy5115 106 LKTIELRIAQQRYKKLSEFIGDMTKIFDN 134 (171)
Q Consensus 106 l~~I~~kl~~~~Y~s~~~f~~Dv~li~~N 134 (171)
..-|...+.+|.|.|..++++|.-..+..
T Consensus 15 ~~~i~~~V~sG~Y~s~SEviR~~lR~l~~ 43 (88)
T 3kxe_C 15 QAFIDSQVADGRYGSASEVIRAGLRLLEE 43 (88)
T ss_dssp HHHHHHHHTTTSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 35788999999999999999997776654
No 131
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=73.48 E-value=0.84 Score=26.23 Aligned_cols=29 Identities=28% Similarity=0.500 Sum_probs=19.3
Q ss_pred ecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 16 CCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 16 ~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
..-.|...||..|+..-... ...||.|+.
T Consensus 31 ~~~~C~H~fc~~Ci~~~~~~-----~~~CP~Cr~ 59 (69)
T 2kiz_A 31 RRLPCMHLFHQVCVDQWLIT-----NKKCPICRV 59 (69)
T ss_dssp EECTTSCEEEHHHHHHHHHH-----CSBCTTTCS
T ss_pred EEeCCCCHHHHHHHHHHHHc-----CCCCcCcCc
Confidence 33469999999998432111 236999983
No 132
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.31 E-value=0.97 Score=25.46 Aligned_cols=27 Identities=22% Similarity=0.636 Sum_probs=17.5
Q ss_pred CCCceecccccCccccCcCCCCCCCCCcc
Q psy5115 19 TCQDWFHGRCVGILQSEADNIDEYICPNC 47 (171)
Q Consensus 19 ~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C 47 (171)
.|...||..|+..... .......||.|
T Consensus 37 ~CgH~fC~~Ci~~~~~--~~~~~~~CP~C 63 (63)
T 2ysj_A 37 DCGHNFCLKCITQIGE--TSCGFFKCPLC 63 (63)
T ss_dssp TTSSEECHHHHHHHHH--HCSSCCCCSCC
T ss_pred CCCCcchHHHHHHHHH--cCCCCCcCcCC
Confidence 7899999999733211 11235688887
No 133
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.39 E-value=2.4 Score=24.48 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=26.7
Q ss_pred cccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 4 HTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 4 ~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
|..|.+.-...+.-..|...||..|+...-.. ...||.|+.
T Consensus 18 C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-----~~~CP~Cr~ 58 (72)
T 2djb_A 18 CSICKGYLIDATTITECLHTFCKSCIVRHFYY-----SNRCPKCNI 58 (72)
T ss_dssp CTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-----CSSCTTTCC
T ss_pred CCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-----CCcCCCcCc
Confidence 44555554434555689999999998432111 368999984
No 134
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=70.08 E-value=5.3 Score=21.84 Aligned_cols=24 Identities=21% Similarity=0.624 Sum_probs=17.7
Q ss_pred CCCceecccccCccccCcCCCCCCCCCccCCC
Q psy5115 19 TCQDWFHGRCVGILQSEADNIDEYICPNCNNS 50 (171)
Q Consensus 19 ~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~~ 50 (171)
.|...|+..|+.. ....||.|+..
T Consensus 23 ~CgH~fC~~Ci~~--------~~~~CP~Cr~~ 46 (56)
T 1bor_A 23 PCLHTLCSGCLEA--------SGMQCPICQAP 46 (56)
T ss_dssp TTSCCSBTTTCSS--------SSSSCSSCCSS
T ss_pred CCCCcccHHHHcc--------CCCCCCcCCcE
Confidence 4788888888843 24689999843
No 135
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.99 E-value=1.7 Score=25.16 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=24.5
Q ss_pred cccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 4 HTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 4 ~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
|..|.+.-...+.- .|...||..|+..-.. ....||.|+.
T Consensus 18 C~IC~~~~~~~~~~-~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~ 57 (71)
T 2d8t_A 18 CAICLQTCVHPVSL-PCKHVFCYLCVKGASW-----LGKRCALCRQ 57 (71)
T ss_dssp CSSSSSBCSSEEEE-TTTEEEEHHHHHHCTT-----CSSBCSSSCC
T ss_pred CccCCcccCCCEEc-cCCCHHHHHHHHHHHH-----CCCcCcCcCc
Confidence 44444443333333 5999999999843211 1268999983
No 136
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=68.05 E-value=1.6 Score=27.59 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=27.2
Q ss_pred cccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 4 HTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 4 ~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
|..|.+.-..-+....|+..||..|+...-.. ...||.|+.
T Consensus 18 C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-----~~~CP~Cr~ 58 (108)
T 2ckl_A 18 CVLCGGYFIDATTIIECLHSFCKTCIVRYLET-----SKYCPICDV 58 (108)
T ss_dssp CTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-----CSBCTTTCC
T ss_pred CccCChHHhCcCEeCCCCChhhHHHHHHHHHh-----CCcCcCCCc
Confidence 55555554445566689999999998432111 268999984
No 137
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=67.87 E-value=2 Score=25.47 Aligned_cols=45 Identities=16% Similarity=0.303 Sum_probs=25.6
Q ss_pred cccccCCCceeEecCCCCceecccccCccccC-cCCCCCCCCCccCC
Q psy5115 4 HTLAVIEPKFYICCDTCQDWFHGRCVGILQSE-ADNIDEYICPNCNN 49 (171)
Q Consensus 4 ~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~-~~~~~~~~Cp~C~~ 49 (171)
|..|.+.-...+.- .|...||..|+...... ........||.|+.
T Consensus 22 C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~ 67 (85)
T 2ecw_A 22 CPICLELLKEPVSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRV 67 (85)
T ss_dssp CTTTCSCCSSCEEC-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCC
T ss_pred CcCCChhhCcceeC-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCC
Confidence 44444443333333 59999999997321111 11233689999984
No 138
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=67.03 E-value=1.9 Score=26.69 Aligned_cols=41 Identities=15% Similarity=0.305 Sum_probs=26.0
Q ss_pred cccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 4 HTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 4 ~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
|..|.+.-..-+....|+..||..|+...-. ....||.|+.
T Consensus 25 C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~ 65 (99)
T 2y43_A 25 CGICFEYFNIAMIIPQCSHNYCSLCIRKFLS-----YKTQCPTCCV 65 (99)
T ss_dssp CTTTCSBCSSEEECTTTCCEEEHHHHHHHHT-----TCCBCTTTCC
T ss_pred cccCChhhCCcCEECCCCCHhhHHHHHHHHH-----CCCCCCCCCC
Confidence 4445444333444567999999999843211 1368999984
No 139
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=64.82 E-value=1.2 Score=28.51 Aligned_cols=30 Identities=23% Similarity=0.548 Sum_probs=20.6
Q ss_pred EecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 15 ICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 15 i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
+.--.|...||..|+..-.. ..-.||.|+.
T Consensus 68 ~~~~~C~H~FH~~Ci~~Wl~-----~~~~CP~Cr~ 97 (106)
T 3dpl_R 68 VAWGVCNHAFHFHCISRWLK-----TRQVCPLDNR 97 (106)
T ss_dssp EEEETTSCEEEHHHHHHHHT-----TCSBCSSSCS
T ss_pred EeecccCcEECHHHHHHHHH-----cCCcCcCCCC
Confidence 33347999999999843211 1358999984
No 140
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=64.63 E-value=2.3 Score=29.99 Aligned_cols=31 Identities=16% Similarity=0.547 Sum_probs=23.5
Q ss_pred CCCceecccc----cCccccCcCCCCCCCCCccCC
Q psy5115 19 TCQDWFHGRC----VGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 19 ~C~r~~H~~C----~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
.|+|++...+ +|+++......-+.+||.|..
T Consensus 108 ~CPRv~C~~q~~LPvGlSd~pg~~~VKlyCP~C~D 142 (182)
T 1qf8_A 108 YCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMD 142 (182)
T ss_dssp BCCBGGGTTCBCEEECSCSSTTSCBCEEECTTTCC
T ss_pred CCCccccCCCcccCCccCCCCCCCceEEECCCccc
Confidence 6999997655 366666666677899999994
No 141
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.00 E-value=2.4 Score=23.11 Aligned_cols=27 Identities=26% Similarity=0.635 Sum_probs=16.8
Q ss_pred CCCceecccccCccccCcCCCCCCCCCcc
Q psy5115 19 TCQDWFHGRCVGILQSEADNIDEYICPNC 47 (171)
Q Consensus 19 ~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C 47 (171)
.|...||..|+...-. .......||.|
T Consensus 32 ~CgH~fC~~Ci~~~~~--~~~~~~~CP~C 58 (58)
T 2ecj_A 32 ECGHNFCKACITRWWE--DLERDFPCPVC 58 (58)
T ss_dssp SSCCCCCHHHHHHHTT--SSCCSCCCSCC
T ss_pred CCCCccCHHHHHHHHH--hcCCCCCCCCC
Confidence 5888899999743211 11235688887
No 142
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.51 E-value=1.4 Score=26.13 Aligned_cols=31 Identities=23% Similarity=0.473 Sum_probs=19.6
Q ss_pred CCCceecccccCccccC-cCCCCCCCCCccCC
Q psy5115 19 TCQDWFHGRCVGILQSE-ADNIDEYICPNCNN 49 (171)
Q Consensus 19 ~C~r~~H~~C~~~~~~~-~~~~~~~~Cp~C~~ 49 (171)
.|...||..|+...... ........||.|+.
T Consensus 36 ~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~ 67 (85)
T 2ecv_A 36 DCGHSFCQACLTANHKKSMLDKGESSCPVCRI 67 (85)
T ss_dssp SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCC
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCC
Confidence 68999999998331111 00123579999984
No 143
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=62.54 E-value=1.9 Score=31.20 Aligned_cols=31 Identities=16% Similarity=0.494 Sum_probs=23.1
Q ss_pred CCCceeccccc----CccccCcCCCCCCCCCccCC
Q psy5115 19 TCQDWFHGRCV----GILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 19 ~C~r~~H~~C~----~~~~~~~~~~~~~~Cp~C~~ 49 (171)
.|+|+++..+. |+++......-+-+||.|..
T Consensus 108 ~CPRv~C~~q~~LPvGlSD~pg~~~VKlyCP~C~D 142 (215)
T 4dgl_A 108 YCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMD 142 (215)
T ss_dssp BCCBGGGTSCBCEEEESCSSTTSCBEEEECTTTCC
T ss_pred cCCccccCCCceeccccCCCCCccceeEeCCCccc
Confidence 69999988663 55555555666889999993
No 144
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=61.46 E-value=5.6 Score=21.40 Aligned_cols=19 Identities=32% Similarity=0.628 Sum_probs=16.1
Q ss_pred eEecCCCCceecccccCcc
Q psy5115 14 YICCDTCQDWFHGRCVGIL 32 (171)
Q Consensus 14 ~i~C~~C~r~~H~~C~~~~ 32 (171)
-+.|..|.-..|..|+...
T Consensus 27 G~~C~~C~~~~H~~C~~~v 45 (52)
T 1faq_A 27 GFRCQTCGYKFHEHCSTKV 45 (52)
T ss_dssp EEECTTTTCCBCSTTSSSS
T ss_pred CCEeCCCCCeEChhHHhhC
Confidence 4789999999999998543
No 145
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=60.39 E-value=3.3 Score=24.19 Aligned_cols=31 Identities=19% Similarity=0.470 Sum_probs=20.2
Q ss_pred CCCceecccccCccccC--cCCCCCCCCCccCC
Q psy5115 19 TCQDWFHGRCVGILQSE--ADNIDEYICPNCNN 49 (171)
Q Consensus 19 ~C~r~~H~~C~~~~~~~--~~~~~~~~Cp~C~~ 49 (171)
.|+..||..|+...-.. ........||.|+.
T Consensus 29 ~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~ 61 (79)
T 2egp_A 29 DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGI 61 (79)
T ss_dssp SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCC
T ss_pred CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCC
Confidence 68999999998432111 11133679999984
No 146
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=59.89 E-value=6.7 Score=25.01 Aligned_cols=40 Identities=20% Similarity=0.390 Sum_probs=24.5
Q ss_pred cccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCCC
Q psy5115 4 HTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNS 50 (171)
Q Consensus 4 ~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~~ 50 (171)
|..|.+.-...+.-..|+..|+..|+..... ..||.|+..
T Consensus 25 C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-------~~CP~Cr~~ 64 (117)
T 1jm7_B 25 CSRCTNILREPVCLGGCEHIFCSNCVSDCIG-------TGCPVCYTP 64 (117)
T ss_dssp CSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-------TBCSSSCCB
T ss_pred CCCCChHhhCccEeCCCCCHHHHHHHHHHhc-------CCCcCCCCc
Confidence 4444444333333336899999999843211 589999843
No 147
>1fr2_B Colicin E9; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: d.4.1.1 PDB: 1bxi_B 1emv_B 1fsj_B 2gyk_B 2gze_B 2gzf_B 2gzg_B 2gzi_B 2gzj_B 2k5x_B 2vlo_B 2wpt_B 2vlp_B 2vln_B 2vlq_B 1v13_A 1v14_A 1v15_A 3u43_B 1znv_B ...
Probab=59.88 E-value=8.9 Score=25.53 Aligned_cols=31 Identities=10% Similarity=0.174 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy5115 107 KTIELRIAQQRYKKLSEFIGDMTKIFDNCRY 137 (171)
Q Consensus 107 ~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~ 137 (171)
+.|.+||+...|.|.++|...+.+-+.|--.
T Consensus 36 ~~IAdkLRGr~F~sFd~FR~afW~eVs~Dpe 66 (134)
T 1fr2_B 36 DRIADKLRDKEFKSFDDFRKAVWEEVSKDPE 66 (134)
T ss_dssp HHHHHHHTTCEESSHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHhcCCcCCCHHHHHHHHHHHHhcCHH
Confidence 6799999999999999999999998887443
No 148
>2jb0_B Colicin E7; hydrolase/inhibitor, hydrolase/inhibitor complex, zinc, toxin, plasmid, nuclease, hydrolase, antibiotic, H-N-H motif, bacteriocin; 1.91A {Escherichia coli} SCOP: d.4.1.1 PDB: 3fbd_A 2jaz_B 2jbg_B 3gkl_A 3gjn_B 1pt3_A 2ivh_A 1ujz_B 2erh_B
Probab=59.74 E-value=9 Score=25.39 Aligned_cols=31 Identities=10% Similarity=0.193 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy5115 107 KTIELRIAQQRYKKLSEFIGDMTKIFDNCRY 137 (171)
Q Consensus 107 ~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~ 137 (171)
+.|.+||+...|.|.++|...+.+-+.|--.
T Consensus 33 ~qIAdkLRGr~F~sFd~FR~afW~eVs~Dpe 63 (131)
T 2jb0_B 33 DRIANKLRDKEFKSFDDFRKKFWEEVSKDPE 63 (131)
T ss_dssp HHHHHHHTTCEESSHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHcCCcCCCHHHHHHHHHHHHhcCHH
Confidence 6799999999999999999999988887443
No 149
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.59 E-value=1.3 Score=25.15 Aligned_cols=28 Identities=25% Similarity=0.589 Sum_probs=19.2
Q ss_pred CCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 18 DTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 18 ~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
-.|+..||..|+...-. .....||.|+.
T Consensus 31 ~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~ 58 (66)
T 2ecy_A 31 TECGHRFCESCMAALLS----SSSPKCTACQE 58 (66)
T ss_dssp CSSSCCCCHHHHHHHHT----TSSCCCTTTCC
T ss_pred CCCCCHHHHHHHHHHHH----hCcCCCCCCCc
Confidence 37889999999843211 23468999983
No 150
>2l9z_A PR domain zinc finger protein 4; zinc-binding domain, transcription; NMR {Homo sapiens}
Probab=58.78 E-value=4.6 Score=20.74 Aligned_cols=18 Identities=28% Similarity=0.713 Sum_probs=15.6
Q ss_pred ceeEecCCCCceeccccc
Q psy5115 12 KFYICCDTCQDWFHGRCV 29 (171)
Q Consensus 12 ~~~i~C~~C~r~~H~~C~ 29 (171)
-+.+-|+.|.+.|-..|-
T Consensus 9 ~~yl~CE~C~~~~~~~Cp 26 (39)
T 2l9z_A 9 LFTIWCTLCDRAYPSDCP 26 (39)
T ss_dssp SCSEEEGGGTEEESSSBT
T ss_pred hhhhHHHHHhhhchhhch
Confidence 357889999999999995
No 151
>4cpa_I Metallocarboxypeptidase inhibitor; hydrolase (C-terminal peptidase); 2.50A {Solanum tuberosum} SCOP: g.3.2.1 PDB: 1h20_A
Probab=58.32 E-value=7.4 Score=19.40 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=18.4
Q ss_pred ecccccCccccCcCCCCCCCCCccCCCCc
Q psy5115 24 FHGRCVGILQSEADNIDEYICPNCNNSSS 52 (171)
Q Consensus 24 ~H~~C~~~~~~~~~~~~~~~Cp~C~~~~~ 52 (171)
|.+.|.++-....+-++.|+|..|-+.+.
T Consensus 4 yD~~C~KPC~T~DDCS~gw~CqaC~nfa~ 32 (38)
T 4cpa_I 4 ADPICNKPCKTHDDCSGAWFCQACWNSAR 32 (38)
T ss_dssp SCTTTTCBCSSSSSSCCCSSCCEEETTTT
T ss_pred cccccCCCccCccccccchHHHHHHhhcc
Confidence 44566655444444577899999975543
No 152
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=57.83 E-value=2.7 Score=27.27 Aligned_cols=47 Identities=17% Similarity=0.313 Sum_probs=30.2
Q ss_pred CceecccccCccccCcCCCCCCCCCccCCCCcccccccCCChhHHHHHHHHHHHHHhCc
Q psy5115 21 QDWFHGRCVGILQSEADNIDEYICPNCNNSSSNLANMKNLTPRDFESLRKLMKQIQAHK 79 (171)
Q Consensus 21 ~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~~ 79 (171)
.+|||..|....... ............|..+++..+..+++.....+
T Consensus 51 ~~W~H~~Cf~~~~~~------------i~~~~~I~G~~~L~~eDQ~~I~~~i~~~~~~~ 97 (114)
T 1v9x_A 51 PMWNHASCILKKTKQ------------IKSVDDVEGIESLRWEDQQKIRKYVESGAGSN 97 (114)
T ss_dssp CEEEEHHHHHTSSSC------------CSCGGGEETTTTSCHHHHHHHHHHHSSCSSST
T ss_pred ceeECccccchhhcc------------CCChHHCCChHHCCHHHHHHHHHHHHHcCCCC
Confidence 679999998432110 01223444556789999999988887755544
No 153
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=57.68 E-value=2.2 Score=27.85 Aligned_cols=27 Identities=26% Similarity=0.576 Sum_probs=0.0
Q ss_pred CCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 18 DTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 18 ~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
-.|...||..|+..-... .-.||.|+.
T Consensus 82 ~~C~H~FH~~CI~~Wl~~-----~~~CP~Cr~ 108 (117)
T 4a0k_B 82 GVCNHAFHFHCISRWLKT-----RQVCPLDNR 108 (117)
T ss_dssp --------------------------------
T ss_pred CCcCceEcHHHHHHHHHc-----CCcCCCCCC
Confidence 479999999998442111 347999983
No 154
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=57.57 E-value=3.1 Score=27.53 Aligned_cols=40 Identities=15% Similarity=0.270 Sum_probs=24.0
Q ss_pred cccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 4 HTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 4 ~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
|..|.+.-...+.. .|+..||..|+..-- .....||.|+.
T Consensus 56 C~iC~~~~~~~~~~-~CgH~fc~~Ci~~~~-----~~~~~CP~Cr~ 95 (138)
T 4ayc_A 56 CIICSEYFIEAVTL-NCAHSFCSYCINEWM-----KRKIECPICRK 95 (138)
T ss_dssp CTTTCSBCSSEEEE-TTSCEEEHHHHHHHT-----TTCSBCTTTCC
T ss_pred CcccCcccCCceEC-CCCCCccHHHHHHHH-----HcCCcCCCCCC
Confidence 44455443333333 589999999984221 11357999984
No 155
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.64 E-value=2.7 Score=24.91 Aligned_cols=27 Identities=19% Similarity=0.448 Sum_probs=19.2
Q ss_pred CCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 18 DTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 18 ~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
-.|...||..|+..... ....||.|+.
T Consensus 31 ~~CgH~fC~~Ci~~~~~-----~~~~CP~Cr~ 57 (81)
T 2csy_A 31 TKCRHYFCESCALEHFR-----ATPRCYICDQ 57 (81)
T ss_dssp CTTSCEEEHHHHHHHHH-----HCSBCSSSCC
T ss_pred ccCCCHhHHHHHHHHHH-----CCCcCCCcCc
Confidence 47899999999843211 1468999984
No 156
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=56.30 E-value=3.3 Score=26.78 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=24.7
Q ss_pred cccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 4 HTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 4 ~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
|..|.+.-...+.- .|+..||..|+...-. .....||.|+.
T Consensus 55 C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~ 95 (124)
T 3fl2_A 55 CICCQELVFRPITT-VCQHNVCKDCLDRSFR----AQVFSCPACRY 95 (124)
T ss_dssp CTTTSSBCSSEEEC-TTSCEEEHHHHHHHHH----TTCCBCTTTCC
T ss_pred CCcCChHHcCcEEe-eCCCcccHHHHHHHHh----HCcCCCCCCCc
Confidence 44444432222332 7999999999843211 23469999994
No 157
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=56.02 E-value=1.9 Score=24.66 Aligned_cols=31 Identities=23% Similarity=0.602 Sum_probs=21.5
Q ss_pred eEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 14 YICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 14 ~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
.+.--.|+..||..|+..-... .-.||.|+.
T Consensus 29 ~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~ 59 (71)
T 3ng2_A 29 LIVSTECGHVFCSQCLRDSLKN-----ANTCPTCRK 59 (71)
T ss_dssp CEEECTTSCEEEHHHHHHHHHH-----CSBCTTTCC
T ss_pred CeEeCCCCChHhHHHHHHHHHc-----CCCCCCCCC
Confidence 4455689999999998432111 248999984
No 158
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=55.68 E-value=6.3 Score=22.33 Aligned_cols=39 Identities=21% Similarity=0.427 Sum_probs=24.4
Q ss_pred cccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccC
Q psy5115 4 HTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCN 48 (171)
Q Consensus 4 ~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~ 48 (171)
|+++-.+.+ ...|..|...|..+|.... ...-..||.|.
T Consensus 21 C~~~~~~~~-~y~C~~C~~~FC~dCD~fi-----He~Lh~CPgC~ 59 (59)
T 1z60_A 21 CQGELKDQH-VYVCAVCQNVFCVDCDVFV-----HDSLHSCPGCI 59 (59)
T ss_dssp TTEECTTSE-EECCTTTTCCBCHHHHHTT-----TTTSCSSSTTC
T ss_pred cCcccCCCc-cEECCccCcCcccchhHHH-----HhhccCCcCCC
Confidence 344443333 4679999999999986332 22246888873
No 159
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=54.94 E-value=7.9 Score=24.49 Aligned_cols=28 Identities=18% Similarity=0.462 Sum_probs=20.3
Q ss_pred CCCceecccccCccccCcCCCCCCCCCccCCC
Q psy5115 19 TCQDWFHGRCVGILQSEADNIDEYICPNCNNS 50 (171)
Q Consensus 19 ~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~~ 50 (171)
.|+..||..|+..... .....||.|+..
T Consensus 32 ~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~~ 59 (115)
T 3l11_A 32 PCNHTLCKPCFQSTVE----KASLCCPFCRRR 59 (115)
T ss_dssp TTSCEECHHHHCCCCC----TTTSBCTTTCCB
T ss_pred CCCCHHhHHHHHHHHh----HCcCCCCCCCcc
Confidence 7999999999844321 224799999953
No 160
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=53.84 E-value=16 Score=19.66 Aligned_cols=17 Identities=24% Similarity=0.657 Sum_probs=14.8
Q ss_pred EecCCCCceecccccCc
Q psy5115 15 ICCDTCQDWFHGRCVGI 31 (171)
Q Consensus 15 i~C~~C~r~~H~~C~~~ 31 (171)
+.|+.|.--.|..|...
T Consensus 28 ~kC~~Ck~~cH~kC~~~ 44 (49)
T 1kbe_A 28 VKCKHCRLKCHNKCTKE 44 (49)
T ss_dssp EEETTTTEEESSSCTTT
T ss_pred CCCCCCCCccchhhcCc
Confidence 78999999999999853
No 161
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.33 E-value=1.5 Score=25.17 Aligned_cols=38 Identities=16% Similarity=0.336 Sum_probs=23.5
Q ss_pred cccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccC
Q psy5115 4 HTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCN 48 (171)
Q Consensus 4 ~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~ 48 (171)
|..|.+.-.. .--.|...||..|+..-.. ....||.|+
T Consensus 18 C~IC~~~~~~--~~~~CgH~fc~~Ci~~~~~-----~~~~CP~Cr 55 (70)
T 2ecn_A 18 CCICMDGRAD--LILPCAHSFCQKCIDKWSD-----RHRNCPICR 55 (70)
T ss_dssp CSSSCCSCCS--EEETTTEEECHHHHHHSSC-----CCSSCHHHH
T ss_pred CeeCCcCccC--cccCCCCcccHHHHHHHHH-----CcCcCCCcC
Confidence 4444444333 1236899999999843211 357899998
No 162
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.74 E-value=2.3 Score=24.08 Aligned_cols=31 Identities=23% Similarity=0.602 Sum_probs=21.0
Q ss_pred eEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 14 YICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 14 ~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
.+.--.|...||..|+..-... ...||.|+.
T Consensus 34 ~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~ 64 (69)
T 2ea6_A 34 LIVSTECGHVFCSQCLRDSLKN-----ANTCPTCRK 64 (69)
T ss_dssp CEEECSSSCEEEHHHHHHHHHH-----CSSCTTTCC
T ss_pred CeEeCCCCChhcHHHHHHHHHc-----CCCCCCCCC
Confidence 3445589999999998432111 358999983
No 163
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=52.71 E-value=3.9 Score=32.02 Aligned_cols=15 Identities=33% Similarity=0.866 Sum_probs=13.4
Q ss_pred EecC--CCCceeccccc
Q psy5115 15 ICCD--TCQDWFHGRCV 29 (171)
Q Consensus 15 i~C~--~C~r~~H~~C~ 29 (171)
..|+ .|..-||..|+
T Consensus 327 k~C~n~~C~h~FH~~CL 343 (381)
T 3k1l_B 327 VSCDNAKCVLKCHAVCL 343 (381)
T ss_dssp BCCSCTTCCCCBCSGGG
T ss_pred ccccCCccCCccchHHH
Confidence 4688 89999999997
No 164
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=52.44 E-value=11 Score=23.90 Aligned_cols=43 Identities=14% Similarity=0.323 Sum_probs=27.2
Q ss_pred CceecccccCccccCcCCCCCCCCCccCCCCcccccccCCChhHHHHHHHHHHH
Q psy5115 21 QDWFHGRCVGILQSEADNIDEYICPNCNNSSSNLANMKNLTPRDFESLRKLMKQ 74 (171)
Q Consensus 21 ~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~l~~~~~~~~~~~l~~ 74 (171)
.+|||..|........ ............|..+++..+..+++.
T Consensus 56 ~~W~H~~Cf~~~~~~~-----------~~~~~~i~G~~~L~~eDq~~i~~~~e~ 98 (106)
T 2dmj_A 56 PHWYHFSCFWKVGHSI-----------RHPDVEVDGFSELRWDDQQKVKKTAEA 98 (106)
T ss_dssp EEEEETTHHHHTTCCC-----------SCTTTSEETTTTSCHHHHHHHHHHHHH
T ss_pred CEeECcCccchhhccC-----------CCChhhCCChHHCCHHHHHHHHHHHHh
Confidence 5799999984321100 011223445567899999999888876
No 165
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=51.81 E-value=1.8 Score=24.12 Aligned_cols=31 Identities=23% Similarity=0.602 Sum_probs=21.2
Q ss_pred eEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 14 YICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 14 ~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
.+.-..|+..||..|+..-... ...||.|+.
T Consensus 22 ~~~~~~CgH~fc~~Ci~~~~~~-----~~~CP~Cr~ 52 (64)
T 2xeu_A 22 LIVSTECGHVFCSQCLRDSLKN-----ANTCPTCRK 52 (64)
T ss_dssp CEEEETTSCEEEHHHHHHHHHH-----CSBCTTTCC
T ss_pred CEEeCCCCCchhHHHHHHHHHc-----CCCCCCCCc
Confidence 3444589999999998432111 358999983
No 166
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=51.09 E-value=7.7 Score=23.79 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=18.5
Q ss_pred CCceeEecCCCCceecccccCcc
Q psy5115 10 EPKFYICCDTCQDWFHGRCVGIL 32 (171)
Q Consensus 10 ~~~~~i~C~~C~r~~H~~C~~~~ 32 (171)
..++.-.|+.|.-..|..|+...
T Consensus 57 ~~~~~Y~C~~C~f~lH~~Ca~~p 79 (89)
T 1v5n_A 57 GTIWSYHCDECDFDLHAKCALNE 79 (89)
T ss_dssp CCSCEEECTTTCCCCCHHHHHCS
T ss_pred CCCcEEEcCCCCCeEcHHhcCCC
Confidence 45667889999999999998543
No 167
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=51.09 E-value=9.9 Score=20.02 Aligned_cols=15 Identities=13% Similarity=0.093 Sum_probs=11.3
Q ss_pred CCCceeEecCCCCce
Q psy5115 9 IEPKFYICCDTCQDW 23 (171)
Q Consensus 9 ~~~~~~i~C~~C~r~ 23 (171)
|+...|+.|+.|...
T Consensus 1 ~~~~~~~~CE~CG~~ 15 (43)
T 2w0t_A 1 GSGSEPAVCEMCGIV 15 (43)
T ss_dssp CCSCCEEECTTTCCE
T ss_pred CCCCceehhhhhcCc
Confidence 344559999999976
No 168
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=49.95 E-value=4 Score=24.34 Aligned_cols=27 Identities=22% Similarity=0.543 Sum_probs=18.6
Q ss_pred CCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 19 TCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 19 ~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
.|+..|+..|....-. .....||.|+.
T Consensus 32 ~CGH~fC~~Cl~~~~~----~~~~~CP~CR~ 58 (78)
T 1e4u_A 32 TCGYQICRFCWHRIRT----DENGLCPACRK 58 (78)
T ss_dssp TTSCCCCHHHHHHHTT----SSCSBCTTTCC
T ss_pred CCCCCcCHHHHHHHHh----cCCCCCCCCCC
Confidence 5888888888733211 13589999994
No 169
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=49.01 E-value=24 Score=21.13 Aligned_cols=27 Identities=19% Similarity=0.669 Sum_probs=19.3
Q ss_pred ceeEecCCCCceecccccCccccCcCCCCCCCCCccCCC
Q psy5115 12 KFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNS 50 (171)
Q Consensus 12 ~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~~ 50 (171)
..++.|..|.... .+...-+||.|.+.
T Consensus 13 ~~iLrC~aCf~~t------------~~~~k~FCp~CGn~ 39 (79)
T 2con_A 13 SYILRCHGCFKTT------------SDMNRVFCGHCGNK 39 (79)
T ss_dssp CEEEECSSSCCEE------------SCSSCCSCSSSCCS
T ss_pred eeeeEecccceEC------------CCcccccccccCcc
Confidence 4578888888774 23446799999964
No 170
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=48.71 E-value=0.91 Score=25.81 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=23.5
Q ss_pred cccccCCCc--eeEec--CCCCceecccccCccccCcCCCCCCCCCccC
Q psy5115 4 HTLAVIEPK--FYICC--DTCQDWFHGRCVGILQSEADNIDEYICPNCN 48 (171)
Q Consensus 4 ~~~~~~~~~--~~i~C--~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~ 48 (171)
|+-|.++++ .+..| .+..++||..|+..=.. ..+...||.|+
T Consensus 9 CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~---~~~~~~C~~C~ 54 (60)
T 1vyx_A 9 CWICNEELGNERFRACGCTGELENVHRSCLSTWLT---ISRNTACQICG 54 (60)
T ss_dssp ETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHH---HHTCSBCTTTC
T ss_pred eEEeecCCCCceecCcCCCCchhhhHHHHHHHHHH---hCCCCccCCCC
Confidence 444443322 23444 44556999999732111 12247999997
No 171
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.45 E-value=16 Score=18.15 Aligned_cols=35 Identities=11% Similarity=-0.003 Sum_probs=18.7
Q ss_pred eeEecCCCCceecccccCc-cccCcCCCCCCCCCcc
Q psy5115 13 FYICCDTCQDWFHGRCVGI-LQSEADNIDEYICPNC 47 (171)
Q Consensus 13 ~~i~C~~C~r~~H~~C~~~-~~~~~~~~~~~~Cp~C 47 (171)
....|+.|++.|-..-.-. -.........|.|+.|
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C 46 (46)
T 2ytg_A 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG 46 (46)
T ss_dssp CSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred CCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence 3578899988876544200 0000112235788877
No 172
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=48.30 E-value=34 Score=19.04 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=33.5
Q ss_pred HHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHH
Q psy5115 106 LKTIELRIAQ--QRYKKLSEFIGDMTKIFDNCRYYNPRESPFFKH 148 (171)
Q Consensus 106 l~~I~~kl~~--~~Y~s~~~f~~Dv~li~~Na~~yn~~~s~~~~~ 148 (171)
|..|+.||+. |.-..+..|...+.-.-+.-..|.+.+.+-...
T Consensus 11 laaiktrlqalggseaelaafekeiaafeselqaykgkgnpevea 55 (73)
T 2a3d_A 11 LAAIKTRLQALGGSEAELAAFEKEIAAFESELQAYKGKGNPEVEA 55 (73)
T ss_dssp HHHHHHHHHHCSSGGGTHHHHHHHHHHHHHHHHHSSSCCSSTTTH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhccCCChHHHH
Confidence 5678888864 556778899999999888889999887765443
No 173
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=47.94 E-value=7.8 Score=19.00 Aligned_cols=10 Identities=20% Similarity=1.002 Sum_probs=8.5
Q ss_pred CCCCCCCccC
Q psy5115 39 IDEYICPNCN 48 (171)
Q Consensus 39 ~~~~~Cp~C~ 48 (171)
++.|.|+.|.
T Consensus 4 ~gDW~C~~C~ 13 (33)
T 2k1p_A 4 ANDWQCKTCS 13 (33)
T ss_dssp SSSCBCSSSC
T ss_pred CCCcccCCCC
Confidence 4579999998
No 174
>2ibf_B Invasin IPAA, 70 kDa antigen; cell adhesion, structural protein; 3.20A {Shigella flexneri} PDB: 2hsq_B
Probab=47.20 E-value=14 Score=16.47 Aligned_cols=21 Identities=5% Similarity=0.200 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q psy5115 142 ESPFFKHAHQLEMFFVQKVKI 162 (171)
Q Consensus 142 ~s~~~~~a~~l~~~f~~~~~~ 162 (171)
++.+++.|+.+...+.+.+.+
T Consensus 1 nhaiyekakevssalskvlsk 21 (26)
T 2ibf_B 1 NHAIYEKAKEVSSALSKVLSK 21 (26)
T ss_dssp CCSHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHHh
Confidence 356788888887777666654
No 175
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=43.73 E-value=6.9 Score=26.39 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=25.0
Q ss_pred cccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 4 HTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 4 ~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
|..|.+.-..-+. -.|...||..|+..... .....||.|+.
T Consensus 81 C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~ 121 (150)
T 1z6u_A 81 CVCCQELVYQPVT-TECFHNVCKDCLQRSFK----AQVFSCPACRH 121 (150)
T ss_dssp CTTTSSBCSSEEE-CTTSCEEEHHHHHHHHH----TTCCBCTTTCC
T ss_pred eecCChhhcCCEE-cCCCCchhHHHHHHHHH----hCCCcCCCCCc
Confidence 4444444332333 48999999999843221 13468999984
No 176
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=43.42 E-value=3.7 Score=24.86 Aligned_cols=30 Identities=23% Similarity=0.657 Sum_probs=19.7
Q ss_pred CCCCceecccccCccccCcCCCCCCCCCccCCC
Q psy5115 18 DTCQDWFHGRCVGILQSEADNIDEYICPNCNNS 50 (171)
Q Consensus 18 ~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~~ 50 (171)
..|+..|+..|+...-. ..+...||.|+..
T Consensus 30 ~~CgH~fC~~Ci~~~~~---~~~~~~CP~Cr~~ 59 (92)
T 3ztg_A 30 PCCGNSYCDECIRTALL---ESDEHTCPTCHQN 59 (92)
T ss_dssp TTTCCEECHHHHHHHHH---HCTTCCCTTTCCS
T ss_pred CCCCCHHHHHHHHHHHH---hcCCCcCcCCCCc
Confidence 34899999999733211 1234799999954
No 177
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=42.77 E-value=5.2 Score=19.51 Aligned_cols=10 Identities=20% Similarity=1.145 Sum_probs=8.2
Q ss_pred CCCCCCCccC
Q psy5115 39 IDEYICPNCN 48 (171)
Q Consensus 39 ~~~~~Cp~C~ 48 (171)
++.|.|+.|.
T Consensus 3 ~gDW~C~~C~ 12 (32)
T 2lk0_A 3 FEDWLCNKCC 12 (32)
T ss_dssp CSEEECTTTC
T ss_pred CCCCCcCcCc
Confidence 3579999997
No 178
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=42.04 E-value=7.6 Score=21.68 Aligned_cols=28 Identities=25% Similarity=0.605 Sum_probs=19.9
Q ss_pred CCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 18 DTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 18 ~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
..|+..||..|+..... .....||.|+.
T Consensus 24 ~~CgH~fC~~Ci~~~~~----~~~~~CP~Cr~ 51 (65)
T 1g25_A 24 NVCGHTLCESCVDLLFV----RGAGNCPECGT 51 (65)
T ss_dssp CTTCCCEEHHHHHHHHH----TTSSSCTTTCC
T ss_pred CCCCCHhHHHHHHHHHH----cCCCcCCCCCC
Confidence 48999999999843211 12468999984
No 179
>7cei_B Protein (colicin E7 immunity protein); DNAse, E-group colicins, protein-protein interaction, protei recognition, immune system; 2.30A {Escherichia coli str} SCOP: d.4.1.1
Probab=41.43 E-value=24 Score=24.98 Aligned_cols=32 Identities=13% Similarity=0.296 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy5115 103 PMDLKTIELRIAQQRYKKLSEFIGDMTKIFDNC 135 (171)
Q Consensus 103 Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~~Na 135 (171)
|| -+.|..||+.+.|.|.++|...+.+-+.|-
T Consensus 105 PI-PsqIADKLRGR~F~sFD~FR~AFWkeVa~D 136 (206)
T 7cei_B 105 PV-PDRIANKLRDKEFKSFDDFRKKFWEEVSKD 136 (206)
T ss_dssp CC-BHHHHHHHTTCBCSSHHHHHHHHHHHHTTC
T ss_pred CC-CHHHHHHhcCCcCCCHHHHHHHHHHHHccC
Confidence 44 367999999999999999999999988873
No 180
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=40.93 E-value=17 Score=21.39 Aligned_cols=32 Identities=13% Similarity=0.351 Sum_probs=24.2
Q ss_pred CCCCCccCCCCcccccccCCChhHHHHHHHHHHHHHhCcC
Q psy5115 41 EYICPNCNNSSSNLANMKNLTPRDFESLRKLMKQIQAHKS 80 (171)
Q Consensus 41 ~~~Cp~C~~~~~~~~~~~~l~~~~~~~~~~~l~~l~~~~~ 80 (171)
-|.|+.|.. .-++.+..+++.+++..+.+.-.
T Consensus 36 ~~~C~~CGE--------~~~~~e~~~~~~~~~~~f~~~vd 67 (78)
T 3ga8_A 36 GLYCVHCEE--------SIMNKEESDAFMAQVKAFRASVN 67 (78)
T ss_dssp EEEETTTCC--------EECCHHHHHHHHHHHHHHHHHHH
T ss_pred eEECCCCCC--------EEECHHHHHHHHHHHHHHHHHHh
Confidence 599999973 34677888888888888876544
No 181
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=40.40 E-value=18 Score=20.43 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=16.4
Q ss_pred eeEecCCCCceecccccCc
Q psy5115 13 FYICCDTCQDWFHGRCVGI 31 (171)
Q Consensus 13 ~~i~C~~C~r~~H~~C~~~ 31 (171)
+-+.|..|....|..|+..
T Consensus 39 qg~~C~~C~~~~Hk~C~~~ 57 (65)
T 2enz_A 39 QGLKCDACGMNVHHRCQTK 57 (65)
T ss_dssp CSEEESSSCCEECTTTTTT
T ss_pred cccccCCCCCccCHhHHhh
Confidence 4578999999999999854
No 182
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=40.32 E-value=10 Score=20.78 Aligned_cols=35 Identities=14% Similarity=0.271 Sum_probs=21.7
Q ss_pred eeEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 13 FYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 13 ~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
....|+.|++.|-..-.-. ........|.|+.|..
T Consensus 13 k~~~C~~C~k~F~~~~~l~--~~H~~~k~~~C~~C~k 47 (62)
T 1vd4_A 13 ASFKCPVCSSTFTDLEANQ--LFDPMTGTFRCTFCHT 47 (62)
T ss_dssp SEEECSSSCCEEEHHHHHH--HEETTTTEEBCSSSCC
T ss_pred CCccCCCCCchhccHHHhH--hhcCCCCCEECCCCCC
Confidence 3678999999885433211 1111234699999984
No 183
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=39.97 E-value=15 Score=15.73 Aligned_cols=12 Identities=33% Similarity=0.694 Sum_probs=7.9
Q ss_pred EecCCCCceecc
Q psy5115 15 ICCDTCQDWFHG 26 (171)
Q Consensus 15 i~C~~C~r~~H~ 26 (171)
..|+.|++.|..
T Consensus 4 ~~C~~C~~~f~~ 15 (30)
T 2m0d_A 4 YQCDYCGRSFSD 15 (30)
T ss_dssp EECTTTCCEESC
T ss_pred ccCCCCCcccCC
Confidence 467777777653
No 184
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=39.67 E-value=13 Score=22.42 Aligned_cols=45 Identities=22% Similarity=0.317 Sum_probs=27.6
Q ss_pred cccccCCCceeEecCCCC-----ceecccccCccccCcC-CCCCCCCCccC
Q psy5115 4 HTLAVIEPKFYICCDTCQ-----DWFHGRCVGILQSEAD-NIDEYICPNCN 48 (171)
Q Consensus 4 ~~~~~~~~~~~i~C~~C~-----r~~H~~C~~~~~~~~~-~~~~~~Cp~C~ 48 (171)
|+++.+.++....|+.|. ..|.++|....+.... -...|+|+.|.
T Consensus 8 C~~~l~~~~~~~~C~~C~~~~~~~afCPeCgq~Le~lkACGA~~yFC~~C~ 58 (81)
T 2jrp_A 8 CHHALERNGDTAHCETCAKDFSLQALCPDCRQPLQVLKACGAVDYFCQNGH 58 (81)
T ss_dssp SCSCCEECSSEEECTTTCCEEEEEEECSSSCSCCCEEEETTEEEECCTTTT
T ss_pred CCCccccCCCceECccccccCCCcccCcchhhHHHHHHhcCCcCeeeccCC
Confidence 445555556578899997 4567788644322111 12368899887
No 185
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=39.44 E-value=17 Score=18.31 Aligned_cols=37 Identities=11% Similarity=0.184 Sum_probs=20.9
Q ss_pred ceeEecCCCCceecccccC-ccccCcCCCCCCCCCccC
Q psy5115 12 KFYICCDTCQDWFHGRCVG-ILQSEADNIDEYICPNCN 48 (171)
Q Consensus 12 ~~~i~C~~C~r~~H~~C~~-~~~~~~~~~~~~~Cp~C~ 48 (171)
.....|+.|.+.|-..-.- .-.........|.|+.|.
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~ 47 (48)
T 2epr_A 10 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47 (48)
T ss_dssp CCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCC
T ss_pred CcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCC
Confidence 3467899999888654420 000001122358999985
No 186
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.14 E-value=14 Score=21.56 Aligned_cols=44 Identities=16% Similarity=0.251 Sum_probs=24.8
Q ss_pred CccccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccC
Q psy5115 2 KFHTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCN 48 (171)
Q Consensus 2 ~~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~ 48 (171)
-||..+|. .+.-.|..|...+-..-+.... ..-.++-+.|..|.
T Consensus 5 ~yC~~~y~--~~~~~C~~C~~~I~~~~~~a~~-~~~H~~CF~C~~C~ 48 (81)
T 2dlo_A 5 SSGEGCYV--ATLEKCATCSQPILDRILRAMG-KAYHPGCFTCVVCH 48 (81)
T ss_dssp CCCCCCCC--SSCCBCTTTCCBCCSCCEEETT-EEECTTTCBCSSSC
T ss_pred EECHHHhh--cCCCccccCCCeecceeEEECC-ccccHHhcCcccCC
Confidence 47888887 3567899998766543221100 01123445677776
No 187
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=39.04 E-value=11 Score=19.88 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=16.5
Q ss_pred eeEecCCCCceecccccCc
Q psy5115 13 FYICCDTCQDWFHGRCVGI 31 (171)
Q Consensus 13 ~~i~C~~C~r~~H~~C~~~ 31 (171)
+-+.|..|.-..|..|+..
T Consensus 27 qg~~C~~C~~~~H~~C~~~ 45 (50)
T 1ptq_A 27 QGLKCEDCGMNVHHKCREK 45 (50)
T ss_dssp CEEEETTTCCEECHHHHTT
T ss_pred ccCEeCCCCCeECHHHhhh
Confidence 4688999999999999854
No 188
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.01 E-value=34 Score=18.59 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=22.8
Q ss_pred ceeEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 12 KFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 12 ~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
.....|+.|++.|-..-.-.. ...|.|+.|..
T Consensus 16 ~~~~~C~~C~k~f~~~~~l~~------~~~~~C~~C~~ 47 (73)
T 2ctu_A 16 DRSQKCSKCGIIFIRRSTLSR------RKTPMCEKCRK 47 (73)
T ss_dssp CSEEECSSSCCEEECCCCCCC------SSSCCCHHHHH
T ss_pred CCCeeCCcccchhCCHHHhCc------CCCCCCCCCCh
Confidence 346889999999977554222 34699999973
No 189
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=37.84 E-value=41 Score=21.45 Aligned_cols=27 Identities=22% Similarity=0.742 Sum_probs=17.7
Q ss_pred eEecCCCCceecccccCccccCcCCCCCC-CCCccCCCC
Q psy5115 14 YICCDTCQDWFHGRCVGILQSEADNIDEY-ICPNCNNSS 51 (171)
Q Consensus 14 ~i~C~~C~r~~H~~C~~~~~~~~~~~~~~-~Cp~C~~~~ 51 (171)
...|..|+..|... .... .||.|....
T Consensus 73 ~~~C~~CG~~~e~~-----------~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 73 ELECKDCSHVFKPN-----------ALDYGVCEKCHSKN 100 (119)
T ss_dssp EEECSSSSCEECSC-----------CSTTCCCSSSSSCC
T ss_pred eEEcCCCCCEEeCC-----------CCCCCcCccccCCC
Confidence 56677787776651 1146 899998543
No 190
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=37.11 E-value=20 Score=15.66 Aligned_cols=15 Identities=7% Similarity=0.290 Sum_probs=11.4
Q ss_pred CCCHHHHHHHHHHHH
Q psy5115 118 YKKLSEFIGDMTKIF 132 (171)
Q Consensus 118 Y~s~~~f~~Dv~li~ 132 (171)
-.|+..|..|+++|-
T Consensus 7 vDSV~rWmeDLr~MT 21 (22)
T 3ro3_B 7 VDSVQRWMEDLKLMT 21 (26)
T ss_pred hHHHHHHHHHHHhhc
Confidence 357788888988873
No 191
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=35.93 E-value=22 Score=20.88 Aligned_cols=19 Identities=21% Similarity=0.545 Sum_probs=16.3
Q ss_pred eeEecCCCCceecccccCc
Q psy5115 13 FYICCDTCQDWFHGRCVGI 31 (171)
Q Consensus 13 ~~i~C~~C~r~~H~~C~~~ 31 (171)
+-+.|+.|.-..|..|+..
T Consensus 50 qG~~C~~C~~~~Hk~C~~~ 68 (77)
T 2enn_A 50 QGYQCRQCNAAIHKKCIDK 68 (77)
T ss_dssp CEEECSSSCCEEESGGGSS
T ss_pred cccCcCCCCCcCCHhHHhh
Confidence 3578999999999999854
No 192
>3b4s_A Protein LUXT; APC91483.1, LUXT domain, structural genomics, PSI-2, protein structure initiative; 3.10A {Vibrio parahaemolyticus rimd 2210633}
Probab=35.28 E-value=53 Score=20.33 Aligned_cols=45 Identities=9% Similarity=0.048 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHH
Q psy5115 117 RYKKLSEFIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVKI 162 (171)
Q Consensus 117 ~Y~s~~~f~~Dv~li~~Na~~yn~~~s~~~~~a~~l~~~f~~~~~~ 162 (171)
.+.+. +|..=++|+|+|...+..+.....+.-.++.+.....+.+
T Consensus 31 Al~~~-eF~aIlrL~F~hi~~~~~~~~f~~~~i~~l~~~~~~~~G~ 75 (94)
T 3b4s_A 31 ALEDS-EFLAILRLLFHHIVTSESAHEFAANGIDRLYKMVESQFGS 75 (94)
T ss_dssp HTTSH-HHHHHHHHHHHHHHHSCCHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHhCH-HHHHHHHHHHHHHHccCCccHHHHhHHHHHHHHHHHHhCc
Confidence 35544 6999999999999988765555555555555555555543
No 193
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=35.22 E-value=16 Score=15.44 Aligned_cols=11 Identities=18% Similarity=0.613 Sum_probs=7.2
Q ss_pred EecCCCCceec
Q psy5115 15 ICCDTCQDWFH 25 (171)
Q Consensus 15 i~C~~C~r~~H 25 (171)
..|+.|++.|-
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvh_A 4 FSCSLCPQRSR 14 (27)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCcChhhC
Confidence 45777776664
No 194
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=35.18 E-value=13 Score=15.84 Aligned_cols=9 Identities=33% Similarity=1.065 Sum_probs=4.6
Q ss_pred ecCCCCcee
Q psy5115 16 CCDTCQDWF 24 (171)
Q Consensus 16 ~C~~C~r~~ 24 (171)
.|+.|++.|
T Consensus 4 ~C~~C~~~f 12 (29)
T 1ard_A 4 VCEVCTRAF 12 (29)
T ss_dssp BCTTTCCBC
T ss_pred ECCCCCccc
Confidence 355555544
No 195
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=34.67 E-value=12 Score=21.57 Aligned_cols=27 Identities=7% Similarity=0.231 Sum_probs=19.3
Q ss_pred CCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 19 TCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 19 ~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
.|+..||..|+...-. .+...||.|+.
T Consensus 25 ~CgH~fc~~Ci~~~~~----~~~~~CP~C~~ 51 (78)
T 1t1h_A 25 STGQTYERSSIQKWLD----AGHKTCPKSQE 51 (78)
T ss_dssp TTTEEEEHHHHHHHHT----TTCCBCTTTCC
T ss_pred CCCCeecHHHHHHHHH----HCcCCCCCCcC
Confidence 6999999999833211 12578999984
No 196
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.35 E-value=39 Score=20.56 Aligned_cols=8 Identities=25% Similarity=0.650 Sum_probs=5.2
Q ss_pred CCCCCccC
Q psy5115 41 EYICPNCN 48 (171)
Q Consensus 41 ~~~Cp~C~ 48 (171)
.|.|+.|.
T Consensus 80 ~~~C~~C~ 87 (115)
T 2dmi_A 80 VLKCMYCG 87 (115)
T ss_dssp SCBCSSSC
T ss_pred ceECCCCC
Confidence 46677775
No 197
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=34.29 E-value=19 Score=20.29 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=16.2
Q ss_pred eeEecCCCCceecccccCc
Q psy5115 13 FYICCDTCQDWFHGRCVGI 31 (171)
Q Consensus 13 ~~i~C~~C~r~~H~~C~~~ 31 (171)
+-+.|..|.-..|..|...
T Consensus 36 qg~~C~~C~~~~Hk~C~~~ 54 (65)
T 3uej_A 36 QGLKCEDCGMNVHHKCREK 54 (65)
T ss_dssp CEEEETTTCCEECHHHHTT
T ss_pred eeeECCCCCCeEchhHhhh
Confidence 4588999999999999854
No 198
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=34.24 E-value=17 Score=15.52 Aligned_cols=11 Identities=27% Similarity=0.851 Sum_probs=6.5
Q ss_pred EecCCCCceec
Q psy5115 15 ICCDTCQDWFH 25 (171)
Q Consensus 15 i~C~~C~r~~H 25 (171)
..|+.|++.|-
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 1rik_A 3 FACPECPKRFM 13 (29)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCchhC
Confidence 35666666654
No 199
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.65 E-value=20 Score=20.91 Aligned_cols=19 Identities=26% Similarity=0.737 Sum_probs=16.4
Q ss_pred eeEecCCCCceecccccCc
Q psy5115 13 FYICCDTCQDWFHGRCVGI 31 (171)
Q Consensus 13 ~~i~C~~C~r~~H~~C~~~ 31 (171)
+-++|..|....|..|+..
T Consensus 44 qG~~C~~C~~~~Hk~C~~~ 62 (74)
T 2db6_A 44 FGLRCKNCKTNIHEHCQSY 62 (74)
T ss_dssp EEEEESSSCCEECTTTTGG
T ss_pred CccccCCCCCccChhHHhh
Confidence 3578999999999999854
No 200
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=33.58 E-value=13 Score=18.48 Aligned_cols=13 Identities=23% Similarity=0.483 Sum_probs=7.8
Q ss_pred eEecCCCCceecc
Q psy5115 14 YICCDTCQDWFHG 26 (171)
Q Consensus 14 ~i~C~~C~r~~H~ 26 (171)
...|+.|++.|-.
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2em0_A 12 TWKCRECDMCFSQ 24 (46)
T ss_dssp CCCCSSSCCCCSS
T ss_pred CeECCCCCcccCC
Confidence 4556777666544
No 201
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.35 E-value=27 Score=20.98 Aligned_cols=19 Identities=37% Similarity=0.557 Sum_probs=16.5
Q ss_pred eeEecCCCCceecccccCc
Q psy5115 13 FYICCDTCQDWFHGRCVGI 31 (171)
Q Consensus 13 ~~i~C~~C~r~~H~~C~~~ 31 (171)
+-+.|..|.-..|..|+..
T Consensus 44 qG~~C~~C~~~~Hk~C~~~ 62 (85)
T 2eli_A 44 QGMKCDTCDMNVHKQCVIN 62 (85)
T ss_dssp CEEECSSSCCEEETTTTTT
T ss_pred CCCcCCCcCCccCHhHHhh
Confidence 4588999999999999854
No 202
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=32.86 E-value=9.4 Score=30.21 Aligned_cols=42 Identities=17% Similarity=0.324 Sum_probs=28.0
Q ss_pred ccccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 3 FHTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 3 ~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
.|..|.+.....+. -.|+..||..|+..-.. ...-.||.|+.
T Consensus 334 ~C~ICle~~~~pv~-lpCGH~FC~~Ci~~wl~----~~~~~CP~CR~ 375 (389)
T 2y1n_A 334 LCKICAENDKDVKI-EPCGHLMCTSCLTSWQE----SEGQGCPFCRC 375 (389)
T ss_dssp BCTTTSSSBCCEEE-ETTCCEECHHHHHHHHH----HTCSBCTTTCC
T ss_pred CCCccCcCCCCeEE-eCCCChhhHHHHHHHHh----cCCCCCCCCCC
Confidence 57777777654433 47999999999832211 12458999984
No 203
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=32.77 E-value=11 Score=23.91 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=24.6
Q ss_pred cccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 4 HTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 4 ~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
|..|.+.-...+. -.|+..||..|+...-.. ....||.|+.
T Consensus 26 C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~----~~~~CP~Cr~ 66 (116)
T 1rmd_A 26 CQICEHILADPVE-TSCKHLFCRICILRCLKV----MGSYCPSCRY 66 (116)
T ss_dssp CTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHH----TCSBCTTTCC
T ss_pred CCCCCcHhcCcEE-cCCCCcccHHHHHHHHhH----CcCcCCCCCC
Confidence 4444444333344 379999999998432111 1358999984
No 204
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.47 E-value=25 Score=16.41 Aligned_cols=11 Identities=18% Similarity=0.443 Sum_probs=6.1
Q ss_pred eEecCCCCcee
Q psy5115 14 YICCDTCQDWF 24 (171)
Q Consensus 14 ~i~C~~C~r~~ 24 (171)
...|+.|++.|
T Consensus 9 ~~~C~~C~k~f 19 (37)
T 2elm_A 9 LYYCSQCHYSS 19 (37)
T ss_dssp EEECSSSSCEE
T ss_pred CeECCCCCccc
Confidence 34566665555
No 205
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=32.17 E-value=23 Score=14.94 Aligned_cols=11 Identities=27% Similarity=0.836 Sum_probs=6.1
Q ss_pred EecCCCCceec
Q psy5115 15 ICCDTCQDWFH 25 (171)
Q Consensus 15 i~C~~C~r~~H 25 (171)
..|+.|++.|-
T Consensus 4 ~~C~~C~k~f~ 14 (28)
T 2kvf_A 4 YSCSVCGKRFS 14 (28)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCCCcccC
Confidence 34666665553
No 206
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=32.03 E-value=49 Score=20.94 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=16.7
Q ss_pred ecCCCCceecccccCccccCcCCCCCCCCCccCCC
Q psy5115 16 CCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNS 50 (171)
Q Consensus 16 ~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~~ 50 (171)
.|..|+..| +-++ ...-.||.|+..
T Consensus 69 ~C~~CG~~F---~~~~-------~kPsrCP~CkSe 93 (105)
T 2gmg_A 69 QCRKCGFVF---KAEI-------NIPSRCPKCKSE 93 (105)
T ss_dssp BBTTTCCBC---CCCS-------SCCSSCSSSCCC
T ss_pred ChhhCcCee---cccC-------CCCCCCcCCCCC
Confidence 399999998 2211 223689999843
No 207
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.93 E-value=26 Score=20.91 Aligned_cols=19 Identities=21% Similarity=0.538 Sum_probs=16.4
Q ss_pred eeEecCCCCceecccccCc
Q psy5115 13 FYICCDTCQDWFHGRCVGI 31 (171)
Q Consensus 13 ~~i~C~~C~r~~H~~C~~~ 31 (171)
+-+.|..|....|..|+..
T Consensus 44 qg~~C~~C~~~~Hk~C~~~ 62 (83)
T 2yuu_A 44 QGYKCRQCNAAIHKKCIDK 62 (83)
T ss_dssp CEEEETTTCCEECTTGGGT
T ss_pred cccccCCcCCeeChhhhhh
Confidence 4588999999999999854
No 208
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=31.48 E-value=25 Score=15.91 Aligned_cols=10 Identities=30% Similarity=0.846 Sum_probs=4.8
Q ss_pred EecCCCCcee
Q psy5115 15 ICCDTCQDWF 24 (171)
Q Consensus 15 i~C~~C~r~~ 24 (171)
..|+.|++.|
T Consensus 8 ~~C~~C~k~f 17 (35)
T 1srk_A 8 FVCRICLSAF 17 (35)
T ss_dssp EECSSSCCEE
T ss_pred eeCCCCCccc
Confidence 3455555444
No 209
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=31.42 E-value=31 Score=20.69 Aligned_cols=16 Identities=31% Similarity=0.704 Sum_probs=10.3
Q ss_pred eEecCCCCceeccccc
Q psy5115 14 YICCDTCQDWFHGRCV 29 (171)
Q Consensus 14 ~i~C~~C~r~~H~~C~ 29 (171)
.+.|..|.+.|...|.
T Consensus 43 ~v~C~~C~~~FC~~C~ 58 (86)
T 2ct7_A 43 EATCPQCHQTFCVRCK 58 (86)
T ss_dssp CEECTTTCCEECSSSC
T ss_pred ceEeCCCCCccccccC
Confidence 4666666666666665
No 210
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=31.00 E-value=10 Score=24.17 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=23.9
Q ss_pred cccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 4 HTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 4 ~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
|..|.+.-..-+.. .|+..||..|+...-... ...||.|+.
T Consensus 21 C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~----~~~CP~Cr~ 61 (118)
T 3hct_A 21 CPICLMALREAVQT-PCGHRFCKACIIKSIRDA----GHKCPVDNE 61 (118)
T ss_dssp CTTTCSBCSSEEEC-TTSCEEEHHHHHHHHHHH----CSBCTTTCC
T ss_pred CCcCChhhcCeEEC-CcCChhhHHHHHHHHhhC----CCCCCCCCC
Confidence 33444433333444 699999999984321111 238999984
No 211
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.85 E-value=25 Score=16.12 Aligned_cols=10 Identities=20% Similarity=0.451 Sum_probs=4.5
Q ss_pred EecCCCCcee
Q psy5115 15 ICCDTCQDWF 24 (171)
Q Consensus 15 i~C~~C~r~~ 24 (171)
..|+.|.+.|
T Consensus 10 ~~C~~C~k~f 19 (36)
T 2elq_A 10 FKCSLCEYAT 19 (36)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCCCchh
Confidence 3444444444
No 212
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=30.79 E-value=12 Score=22.78 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=26.7
Q ss_pred cccccCC--CceeEecCCCCceecccccCccccC---cCCCCCCCCCc--cCC
Q psy5115 4 HTLAVIE--PKFYICCDTCQDWFHGRCVGILQSE---ADNIDEYICPN--CNN 49 (171)
Q Consensus 4 ~~~~~~~--~~~~i~C~~C~r~~H~~C~~~~~~~---~~~~~~~~Cp~--C~~ 49 (171)
|..|.+. +..++.-..|...|...|....-.. ........||. |+.
T Consensus 8 C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~ 60 (94)
T 1wim_A 8 CKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPK 60 (94)
T ss_dssp CSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSS
T ss_pred CcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCC
Confidence 5555554 2236666679999999996221110 11112478999 974
No 213
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=30.79 E-value=17 Score=15.22 Aligned_cols=8 Identities=38% Similarity=1.119 Sum_probs=3.4
Q ss_pred cCCCCcee
Q psy5115 17 CDTCQDWF 24 (171)
Q Consensus 17 C~~C~r~~ 24 (171)
|+.|++.|
T Consensus 4 C~~C~k~f 11 (27)
T 1znf_A 4 CGLCERSF 11 (27)
T ss_dssp CSSSCCBC
T ss_pred CCCCCCcC
Confidence 44444433
No 214
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=30.62 E-value=18 Score=15.61 Aligned_cols=9 Identities=33% Similarity=0.966 Sum_probs=4.8
Q ss_pred ecCCCCcee
Q psy5115 16 CCDTCQDWF 24 (171)
Q Consensus 16 ~C~~C~r~~ 24 (171)
.|+.|++.|
T Consensus 4 ~C~~C~k~f 12 (30)
T 1paa_A 4 ACGLCNRAF 12 (30)
T ss_dssp BCTTTCCBC
T ss_pred CCcccCccc
Confidence 355555554
No 215
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=30.53 E-value=30 Score=20.13 Aligned_cols=19 Identities=21% Similarity=0.548 Sum_probs=16.2
Q ss_pred eeEecCCCCceecccccCc
Q psy5115 13 FYICCDTCQDWFHGRCVGI 31 (171)
Q Consensus 13 ~~i~C~~C~r~~H~~C~~~ 31 (171)
+-++|..|.-..|..|...
T Consensus 48 qG~kC~~C~~~cHkkC~~~ 66 (72)
T 2fnf_X 48 QALRCANCKFTCHSECRSL 66 (72)
T ss_dssp CCEECTTSSCEECTGGGGG
T ss_pred CcCccCCCCCeechhhhcc
Confidence 3578999999999999854
No 216
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=30.41 E-value=17 Score=15.45 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=7.0
Q ss_pred EecCCCCceec
Q psy5115 15 ICCDTCQDWFH 25 (171)
Q Consensus 15 i~C~~C~r~~H 25 (171)
..|+.|++.|-
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvg_A 4 YRCPLCRAGCP 14 (27)
T ss_dssp EEETTTTEEES
T ss_pred cCCCCCCcccC
Confidence 45777776663
No 217
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.02 E-value=31 Score=15.71 Aligned_cols=7 Identities=43% Similarity=1.398 Sum_probs=3.4
Q ss_pred CCCCccC
Q psy5115 42 YICPNCN 48 (171)
Q Consensus 42 ~~Cp~C~ 48 (171)
|.|+.|.
T Consensus 10 ~~C~~C~ 16 (36)
T 2els_A 10 FTCEYCN 16 (36)
T ss_dssp EECTTTC
T ss_pred EECCCCC
Confidence 4455554
No 218
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=29.92 E-value=29 Score=21.36 Aligned_cols=13 Identities=46% Similarity=1.053 Sum_probs=9.7
Q ss_pred CCCCCCccCCCCc
Q psy5115 40 DEYICPNCNNSSS 52 (171)
Q Consensus 40 ~~~~Cp~C~~~~~ 52 (171)
.+..||.|++.+.
T Consensus 22 ~~LRCpvCqnqsI 34 (90)
T 2kw0_A 22 EELRCPKCQNNSI 34 (90)
T ss_dssp HSSBCSCTTSCTT
T ss_pred HcCcCCCCCCCch
Confidence 3689999996544
No 219
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=29.46 E-value=27 Score=20.06 Aligned_cols=37 Identities=14% Similarity=0.363 Sum_probs=24.1
Q ss_pred ccccccCCCceeEecCCCCce-ecccccCccccCcCCCCCCCCCccCC
Q psy5115 3 FHTLAVIEPKFYICCDTCQDW-FHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 3 ~~~~~~~~~~~~i~C~~C~r~-~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
.|..|++.....+.= .|... |+..|+... ..||.|+.
T Consensus 26 ~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~---------~~CP~Cr~ 63 (74)
T 4ic3_A 26 LCKICMDRNIAIVFV-PCGHLVTCKQCAEAV---------DKCPMCYT 63 (74)
T ss_dssp BCTTTSSSBCCEEEE-TTCCBCCCHHHHTTC---------SBCTTTCC
T ss_pred CCCCCCCCCCCEEEc-CCCChhHHHHhhhcC---------ccCCCcCc
Confidence 355666654443332 67877 888887432 68999984
No 220
>2gpv_G Nuclear receptor corepressor 2; estrogen related receptor, ERR, ERRG, ESRRG, nuclear recepto steroid receptor, SMRT, tamoxifen, transcription; HET: OHT; 2.85A {Homo sapiens}
Probab=29.41 E-value=43 Score=15.12 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHhcCCCCCHH
Q psy5115 103 PMDLKTIELRIAQQRYKKLS 122 (171)
Q Consensus 103 Pmdl~~I~~kl~~~~Y~s~~ 122 (171)
-|-|+.|-+|.--|.|...+
T Consensus 2 n~gleaiirkalmg~yd~~e 21 (26)
T 2gpv_G 2 NMGLEAIIRKALMGKYDQWE 21 (26)
T ss_pred ccCHHHHHHHHHccchhhHh
Confidence 36788888888888887654
No 221
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=29.31 E-value=22 Score=23.58 Aligned_cols=34 Identities=15% Similarity=0.441 Sum_probs=25.2
Q ss_pred eEecCCCCceecccccCccccCcCCCCCCCCCccC
Q psy5115 14 YICCDTCQDWFHGRCVGILQSEADNIDEYICPNCN 48 (171)
Q Consensus 14 ~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~ 48 (171)
-..|..|..-+...|-+.... ......|.|..|.
T Consensus 72 g~~C~~C~~~VC~~C~~~~~~-~~~~~~W~C~vC~ 105 (134)
T 1zbd_B 72 SVVCEDCKKNVCTKCGVETSN-NRPHPVWLCKICL 105 (134)
T ss_dssp EEECTTTCCEEETTSEEECCC-SSSSCCEEEHHHH
T ss_pred CCCCCCCCcccccccCCccCC-CCCccceechhhH
Confidence 378999999999999754421 1234579999996
No 222
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.29 E-value=29 Score=20.15 Aligned_cols=23 Identities=9% Similarity=0.023 Sum_probs=16.0
Q ss_pred CccccccCCCceeEecCCCCceec
Q psy5115 2 KFHTLAVIEPKFYICCDTCQDWFH 25 (171)
Q Consensus 2 ~~~~~~~~~~~~~i~C~~C~r~~H 25 (171)
-||..+|.... .-.|..|...+.
T Consensus 4 ~yC~~cy~~~~-~~~C~~C~~~I~ 26 (82)
T 1x63_A 4 GSSGKCTTRED-SPKCKGCFKAIV 26 (82)
T ss_dssp CCCCCCCSCCC-SCBCSSSCCBCC
T ss_pred cCchhHHcccc-CCcCccCCcccc
Confidence 36888887643 467888877665
No 223
>1pp5_A Microcin J25; lariat, protoknot, backbone-sidechain amide linkage, structu genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: j.5.1.1 PDB: 1q71_A
Probab=28.78 E-value=11 Score=16.86 Aligned_cols=15 Identities=20% Similarity=0.727 Sum_probs=12.3
Q ss_pred CCCccccccCCCCCH
Q psy5115 92 EAPDYYNVVKEPMDL 106 (171)
Q Consensus 92 ~~p~Y~~~i~~Pmdl 106 (171)
.+|+|+.-|-.|+++
T Consensus 5 hvpeyfvgigtpisf 19 (26)
T 1pp5_A 5 HVPEYFVGIGTPISF 19 (26)
T ss_dssp SEECCCSSSSCCCSE
T ss_pred cCcceeEecCCCeEE
Confidence 468899999999876
No 224
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=28.52 E-value=26 Score=20.37 Aligned_cols=13 Identities=0% Similarity=-0.256 Sum_probs=8.6
Q ss_pred eEecCCCCceecc
Q psy5115 14 YICCDTCQDWFHG 26 (171)
Q Consensus 14 ~i~C~~C~r~~H~ 26 (171)
.+.|..|.++|=-
T Consensus 26 ~LiC~~cg~~YPI 38 (69)
T 2pk7_A 26 ELISKGAGLAYPI 38 (69)
T ss_dssp EEEETTTTEEEEE
T ss_pred EEEcCCCCcEecC
Confidence 5667777777643
No 225
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=28.47 E-value=19 Score=24.44 Aligned_cols=31 Identities=16% Similarity=0.470 Sum_probs=24.1
Q ss_pred eEecCCCCceecccccCccccCcCCCCCCCCCccC
Q psy5115 14 YICCDTCQDWFHGRCVGILQSEADNIDEYICPNCN 48 (171)
Q Consensus 14 ~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~ 48 (171)
-..|..|..-+...|-.... ....|.|..|.
T Consensus 85 g~~C~~C~~~VC~~C~~~~~----~~~~W~C~vC~ 115 (153)
T 2zet_C 85 RRQCLECSLFVCKSCSHAHP----EEQGWLCDPCH 115 (153)
T ss_dssp CEECTTTCCEECGGGEECCS----SSSSCEEHHHH
T ss_pred CCcCCCCCchhhcccccccC----CCCcEeeHHHH
Confidence 37899999999999974332 34579999996
No 226
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=34.38 E-value=12 Score=15.68 Aligned_cols=9 Identities=33% Similarity=1.125 Sum_probs=4.6
Q ss_pred ecCCCCcee
Q psy5115 16 CCDTCQDWF 24 (171)
Q Consensus 16 ~C~~C~r~~ 24 (171)
.|+.|++.|
T Consensus 4 ~C~~C~k~f 12 (26)
T 2lvu_A 4 VCERCGKRF 12 (26)
Confidence 355555544
No 227
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=28.10 E-value=24 Score=19.97 Aligned_cols=19 Identities=21% Similarity=0.513 Sum_probs=16.3
Q ss_pred eeEecCCCCceecccccCc
Q psy5115 13 FYICCDTCQDWFHGRCVGI 31 (171)
Q Consensus 13 ~~i~C~~C~r~~H~~C~~~ 31 (171)
+-+.|..|....|..|+..
T Consensus 40 qg~~C~~C~~~~Hk~C~~~ 58 (66)
T 1y8f_A 40 QGMRCTECGVKCHEKCQDL 58 (66)
T ss_dssp EEEEETTTCCEECTTHHHH
T ss_pred ceeEcCCCCCeeCHHHHhh
Confidence 4588999999999999843
No 228
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=28.00 E-value=22 Score=19.70 Aligned_cols=19 Identities=21% Similarity=0.548 Sum_probs=15.6
Q ss_pred eeEecCCCCceecccccCc
Q psy5115 13 FYICCDTCQDWFHGRCVGI 31 (171)
Q Consensus 13 ~~i~C~~C~r~~H~~C~~~ 31 (171)
+-++|+.|.-..|..|...
T Consensus 35 qg~kC~~C~~~cH~kC~~~ 53 (59)
T 1rfh_A 35 QALRCANCKFTCHSECRSL 53 (59)
T ss_dssp CCEECTTTSCEECHHHHTT
T ss_pred CccEeCCCCCeEehhhhhh
Confidence 3578999999999999854
No 229
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}
Probab=27.99 E-value=23 Score=25.94 Aligned_cols=24 Identities=21% Similarity=0.724 Sum_probs=15.3
Q ss_pred ccccCCCceeEecCCCCceeccccc
Q psy5115 5 TLAVIEPKFYICCDTCQDWFHGRCV 29 (171)
Q Consensus 5 ~~~~~~~~~~i~C~~C~r~~H~~C~ 29 (171)
.+++.++. .+-|+.|...|=..|.
T Consensus 22 ~~~~~~~d-~~~Ce~C~~~~~~~C~ 45 (237)
T 3ray_A 22 PKSFQQVD-FWFCESCQEYFVDECP 45 (237)
T ss_dssp -------C-CEEETTTTEEESSSBT
T ss_pred CCCCCCCC-EEEchHhCccccccch
Confidence 46677777 5889999999999995
No 230
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=27.80 E-value=30 Score=14.44 Aligned_cols=9 Identities=33% Similarity=0.874 Sum_probs=4.3
Q ss_pred ecCCCCcee
Q psy5115 16 CCDTCQDWF 24 (171)
Q Consensus 16 ~C~~C~r~~ 24 (171)
.|+.|++.|
T Consensus 4 ~C~~C~k~f 12 (29)
T 2m0f_A 4 KCRECGKQF 12 (29)
T ss_dssp ECTTTSCEE
T ss_pred cCCCCCCcc
Confidence 345554444
No 231
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.77 E-value=42 Score=15.18 Aligned_cols=8 Identities=38% Similarity=0.883 Sum_probs=4.7
Q ss_pred CCCCCccC
Q psy5115 41 EYICPNCN 48 (171)
Q Consensus 41 ~~~Cp~C~ 48 (171)
.|.|+.|.
T Consensus 9 ~~~C~~C~ 16 (36)
T 2elv_A 9 LYDCHICE 16 (36)
T ss_dssp CEECSSSC
T ss_pred CeECCCCC
Confidence 35666665
No 232
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=27.69 E-value=11 Score=23.19 Aligned_cols=43 Identities=19% Similarity=0.472 Sum_probs=30.6
Q ss_pred CccccccCC------CceeEecCCCCceecccccCccccCcCCCCCCCCCccC
Q psy5115 2 KFHTLAVIE------PKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCN 48 (171)
Q Consensus 2 ~~~~~~~~~------~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~ 48 (171)
+.|+.|.|+ ++..|.|..|..-....|.-- +. ....-.||.|.
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEY---Er-keG~q~CpqCk 65 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEY---ER-REGTQNCPQCK 65 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHH---HH-HTSCSSCTTTC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHH---HH-hccCccccccC
Confidence 578888877 446888999998877777622 12 23456899998
No 233
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=27.63 E-value=30 Score=15.91 Aligned_cols=9 Identities=44% Similarity=1.147 Sum_probs=3.8
Q ss_pred eeEecCCCC
Q psy5115 13 FYICCDTCQ 21 (171)
Q Consensus 13 ~~i~C~~C~ 21 (171)
|-++|..|+
T Consensus 5 f~vqcpvcq 13 (29)
T 3vhs_A 5 FQVQCPVCQ 13 (29)
T ss_dssp CEEECTTTC
T ss_pred eeeeChHHH
Confidence 344444443
No 234
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.44 E-value=32 Score=15.80 Aligned_cols=10 Identities=30% Similarity=0.919 Sum_probs=4.5
Q ss_pred EecCCCCcee
Q psy5115 15 ICCDTCQDWF 24 (171)
Q Consensus 15 i~C~~C~r~~ 24 (171)
..|+.|++.|
T Consensus 10 ~~C~~C~k~f 19 (37)
T 2elp_A 10 MKCPYCDFYF 19 (37)
T ss_dssp EECSSSSCEE
T ss_pred eECCCCChhh
Confidence 3444444444
No 235
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.37 E-value=31 Score=15.64 Aligned_cols=7 Identities=57% Similarity=1.801 Sum_probs=3.3
Q ss_pred CCCCccC
Q psy5115 42 YICPNCN 48 (171)
Q Consensus 42 ~~Cp~C~ 48 (171)
|.|+.|.
T Consensus 10 ~~C~~C~ 16 (36)
T 2elt_A 10 YKCPQCS 16 (36)
T ss_dssp EECSSSS
T ss_pred CCCCCCC
Confidence 4455554
No 236
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=26.63 E-value=35 Score=20.68 Aligned_cols=12 Identities=42% Similarity=0.999 Sum_probs=9.0
Q ss_pred CCCCCccCCCCc
Q psy5115 41 EYICPNCNNSSS 52 (171)
Q Consensus 41 ~~~Cp~C~~~~~ 52 (171)
+-.||.|++.+.
T Consensus 26 ~LRCp~Cqnqsi 37 (84)
T 2hl7_A 26 ELRCPKCQNQDI 37 (84)
T ss_dssp HEECTTSSSCBT
T ss_pred cCcCCCCCCCch
Confidence 578999996443
No 237
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=26.46 E-value=13 Score=22.62 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=19.7
Q ss_pred eEecCCCCcee-ccccc-CccccCcCCCCCCCCCccCC
Q psy5115 14 YICCDTCQDWF-HGRCV-GILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 14 ~i~C~~C~r~~-H~~C~-~~~~~~~~~~~~~~Cp~C~~ 49 (171)
...|+.|.+.| -..-. ..-.... ....|.|+.|..
T Consensus 34 ~~~C~~C~k~F~~~~~~L~~H~~~h-~~k~~~C~~Cgk 70 (96)
T 2ctd_A 34 SVSCPTCQAVGRKTIEGLKKHMENC-KQEMFTCHHCGK 70 (96)
T ss_dssp CEECTTTCSCEESSHHHHHHHHHHH-CCCCCCCSSSCC
T ss_pred CcCCCCCCCCcccCHHHHHHHHHHH-CCCCeECCCCCC
Confidence 46899999999 33221 0000001 123589999983
No 238
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=26.42 E-value=12 Score=23.87 Aligned_cols=29 Identities=21% Similarity=0.612 Sum_probs=19.9
Q ss_pred ecCCCCceecccccCccccCcCCCCCCCCCccCC
Q psy5115 16 CCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49 (171)
Q Consensus 16 ~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~ 49 (171)
.--.|+..||..|+..--. ....||.|+.
T Consensus 28 ~~~~CgH~fc~~Ci~~~~~-----~~~~CP~Cr~ 56 (133)
T 4ap4_A 28 VSTECGHVFCSQCLRDSLK-----NANTCPTCRK 56 (133)
T ss_dssp EEETTCCEEEHHHHHHHHT-----TCSBCTTTCC
T ss_pred EecCCCChhhHHHHHHHHH-----hCCCCCCCCC
Confidence 3448999999999843211 1248999984
No 239
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=26.38 E-value=1e+02 Score=18.04 Aligned_cols=21 Identities=10% Similarity=0.061 Sum_probs=15.9
Q ss_pred CCHHHHHHHHhcCCCCCHHHH
Q psy5115 104 MDLKTIELRIAQQRYKKLSEF 124 (171)
Q Consensus 104 mdl~~I~~kl~~~~Y~s~~~f 124 (171)
|.|..|.+-|+.....++.+.
T Consensus 2 m~L~~Il~~L~~~g~vsv~eL 22 (78)
T 1xn7_A 2 ASLIQVRDLLALRGRMEAAQI 22 (78)
T ss_dssp CCHHHHHHHHHHSCSBCHHHH
T ss_pred chHHHHHHHHHHcCCCcHHHH
Confidence 678888888887777776665
No 240
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=32.31 E-value=14 Score=15.92 Aligned_cols=9 Identities=33% Similarity=0.741 Sum_probs=4.8
Q ss_pred ecCCCCcee
Q psy5115 16 CCDTCQDWF 24 (171)
Q Consensus 16 ~C~~C~r~~ 24 (171)
.|+.|++.|
T Consensus 4 ~C~~C~k~f 12 (29)
T 2lvt_A 4 QCVMCGKAF 12 (29)
Confidence 455555554
No 241
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.06 E-value=35 Score=15.25 Aligned_cols=7 Identities=43% Similarity=1.341 Sum_probs=4.0
Q ss_pred CCCCccC
Q psy5115 42 YICPNCN 48 (171)
Q Consensus 42 ~~Cp~C~ 48 (171)
|.|+.|.
T Consensus 8 ~~C~~C~ 14 (35)
T 2elx_A 8 YVCALCL 14 (35)
T ss_dssp EECSSSC
T ss_pred eECCCCc
Confidence 5555554
No 242
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=25.52 E-value=24 Score=20.53 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=9.7
Q ss_pred eEecCCCCceeccc
Q psy5115 14 YICCDTCQDWFHGR 27 (171)
Q Consensus 14 ~i~C~~C~r~~H~~ 27 (171)
.+.|..|.++|=-.
T Consensus 26 ~LiC~~cg~~YPI~ 39 (70)
T 2js4_A 26 ELVCNADRLAFPVR 39 (70)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEEcCCCCceecCC
Confidence 56688888877543
No 243
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=25.45 E-value=25 Score=20.34 Aligned_cols=13 Identities=0% Similarity=-0.092 Sum_probs=9.2
Q ss_pred eEecCCCCceecc
Q psy5115 14 YICCDTCQDWFHG 26 (171)
Q Consensus 14 ~i~C~~C~r~~H~ 26 (171)
.+.|..|.++|=-
T Consensus 28 ~LvC~~c~~~YPI 40 (67)
T 2jny_A 28 LLVNERLNLAYRI 40 (67)
T ss_dssp EEEETTTTEEEEE
T ss_pred EEEcCCCCccccC
Confidence 5668888887744
No 244
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=25.20 E-value=49 Score=18.53 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=16.6
Q ss_pred ceeEecCCCCceecccccCc
Q psy5115 12 KFYICCDTCQDWFHGRCVGI 31 (171)
Q Consensus 12 ~~~i~C~~C~r~~H~~C~~~ 31 (171)
.+.+.|..|.-..|..|...
T Consensus 33 kq~~kC~dC~~~cH~~C~~~ 52 (61)
T 4b6d_A 33 KLSLKCRDCRVVSHPECRDR 52 (61)
T ss_dssp CEEEEESSSSCEECGGGGGG
T ss_pred eEeeECCCCCCeEchhHhhc
Confidence 35788999999999999744
No 245
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=25.05 E-value=25 Score=20.34 Aligned_cols=13 Identities=15% Similarity=0.054 Sum_probs=8.1
Q ss_pred eEecCCCCceecc
Q psy5115 14 YICCDTCQDWFHG 26 (171)
Q Consensus 14 ~i~C~~C~r~~H~ 26 (171)
.+.|..|.++|=-
T Consensus 26 ~LiC~~cg~~YPI 38 (68)
T 2hf1_A 26 ELICKGDRLAFPI 38 (68)
T ss_dssp EEEETTTTEEEEE
T ss_pred EEEcCCCCcEecC
Confidence 4567777777643
No 246
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=24.97 E-value=12 Score=24.24 Aligned_cols=43 Identities=14% Similarity=0.319 Sum_probs=25.8
Q ss_pred CceecccccCccccCcCCCCCCCCCccCCCCcccccccCCChhHHHHHHHHHHH
Q psy5115 21 QDWFHGRCVGILQSEADNIDEYICPNCNNSSSNLANMKNLTPRDFESLRKLMKQ 74 (171)
Q Consensus 21 ~r~~H~~C~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~l~~~~~~~~~~~l~~ 74 (171)
.+|||..|........ . ...........|..+++..+.+.++.
T Consensus 69 ~~WyH~~Cf~~~~~~~---~--------~~~~~I~Gfd~L~~eDQekIkk~ie~ 111 (116)
T 3od8_A 69 PHWYHFSCFWKVGHSI---R--------HPDVEVDGFSELRWDDQQKVKKTAEA 111 (116)
T ss_dssp EEEEEHHHHHHTCCCC---S--------CHHHHEETGGGSCHHHHHHHHHHHHC
T ss_pred CeeECCccChhhhhcc---C--------CChhhCcChHHCCHHHHHHHHHHHHc
Confidence 4799999974321110 0 01123445567889999998887754
No 247
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=24.89 E-value=17 Score=17.89 Aligned_cols=11 Identities=18% Similarity=0.567 Sum_probs=8.1
Q ss_pred CCCCCCCCccC
Q psy5115 38 NIDEYICPNCN 48 (171)
Q Consensus 38 ~~~~~~Cp~C~ 48 (171)
..+.|.|+.|.
T Consensus 4 ~~g~W~C~~C~ 14 (33)
T 3gj3_B 4 GSGTWDCDTCL 14 (33)
T ss_dssp --CCEECTTTC
T ss_pred CCCceeCCccc
Confidence 35689999997
No 248
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=24.80 E-value=26 Score=20.31 Aligned_cols=13 Identities=0% Similarity=-0.182 Sum_probs=8.2
Q ss_pred eEecCCCCceecc
Q psy5115 14 YICCDTCQDWFHG 26 (171)
Q Consensus 14 ~i~C~~C~r~~H~ 26 (171)
.+.|..|.++|=-
T Consensus 26 ~LiC~~cg~~YPI 38 (68)
T 2jr6_A 26 ELWSRQAKLAYPI 38 (68)
T ss_dssp EEEETTTTEEEEE
T ss_pred EEEcCCCCcEecC
Confidence 4567777777643
No 249
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=24.77 E-value=64 Score=21.31 Aligned_cols=14 Identities=14% Similarity=0.392 Sum_probs=10.0
Q ss_pred eEecCCCCceeccc
Q psy5115 14 YICCDTCQDWFHGR 27 (171)
Q Consensus 14 ~i~C~~C~r~~H~~ 27 (171)
...|..|+..|-..
T Consensus 70 ~~~C~~CG~~~~~~ 83 (139)
T 3a43_A 70 VFKCRNCNYEWKLK 83 (139)
T ss_dssp EEEETTTCCEEEGG
T ss_pred cEECCCCCCEEecc
Confidence 56788888776653
No 250
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=24.66 E-value=22 Score=15.12 Aligned_cols=8 Identities=25% Similarity=0.617 Sum_probs=3.4
Q ss_pred cCCCCcee
Q psy5115 17 CDTCQDWF 24 (171)
Q Consensus 17 C~~C~r~~ 24 (171)
|+.|++.|
T Consensus 5 C~~C~k~f 12 (30)
T 1klr_A 5 CQYCEFRS 12 (30)
T ss_dssp CSSSSCCC
T ss_pred CCCCCCcc
Confidence 44444433
No 251
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=24.54 E-value=41 Score=20.30 Aligned_cols=18 Identities=11% Similarity=0.163 Sum_probs=13.7
Q ss_pred CceeEecCCCCceecccc
Q psy5115 11 PKFYICCDTCQDWFHGRC 28 (171)
Q Consensus 11 ~~~~i~C~~C~r~~H~~C 28 (171)
+..+++|+.|.-|....-
T Consensus 42 ge~iv~C~sCSL~I~V~~ 59 (83)
T 1yop_A 42 GEKVAVCPSCSLMIDVVF 59 (83)
T ss_dssp TCCEEECSSSCCEEECBC
T ss_pred CCEEEECCCCccEEEEEE
Confidence 345899999999886544
No 252
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=24.48 E-value=36 Score=16.16 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=7.6
Q ss_pred eEecCCCCceecc
Q psy5115 14 YICCDTCQDWFHG 26 (171)
Q Consensus 14 ~i~C~~C~r~~H~ 26 (171)
...|+.|++.|-.
T Consensus 10 ~~~C~~C~k~f~~ 22 (42)
T 2el5_A 10 PYECSECGKAFNR 22 (42)
T ss_dssp SEECSSSCCEESS
T ss_pred CccCCCcChhhCC
Confidence 4566666666543
No 253
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.40 E-value=39 Score=16.20 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=7.7
Q ss_pred eEecCCCCceecc
Q psy5115 14 YICCDTCQDWFHG 26 (171)
Q Consensus 14 ~i~C~~C~r~~H~ 26 (171)
...|+.|++.|-.
T Consensus 12 ~~~C~~C~k~f~~ 24 (44)
T 2eof_A 12 PYECNECQKAFNT 24 (44)
T ss_dssp SEECTTTCCEESC
T ss_pred CeECCCCCcccCC
Confidence 4566666666544
No 254
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=23.78 E-value=14 Score=18.30 Aligned_cols=8 Identities=50% Similarity=1.555 Sum_probs=6.9
Q ss_pred CCCCCccC
Q psy5115 41 EYICPNCN 48 (171)
Q Consensus 41 ~~~Cp~C~ 48 (171)
-+.||.|.
T Consensus 5 GFiCP~C~ 12 (34)
T 3mjh_B 5 GFICPQCM 12 (34)
T ss_dssp EEECTTTC
T ss_pred ccCCcHHH
Confidence 48999997
No 255
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=29.07 E-value=17 Score=15.60 Aligned_cols=10 Identities=40% Similarity=0.826 Sum_probs=5.7
Q ss_pred ecCCCCceec
Q psy5115 16 CCDTCQDWFH 25 (171)
Q Consensus 16 ~C~~C~r~~H 25 (171)
.|+.|++.|-
T Consensus 5 ~C~~C~k~f~ 14 (30)
T 2lvr_A 5 VCIHCQRQFA 14 (30)
Confidence 4666665553
No 256
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.96 E-value=29 Score=15.75 Aligned_cols=13 Identities=31% Similarity=0.654 Sum_probs=8.5
Q ss_pred eEecCCCCceecc
Q psy5115 14 YICCDTCQDWFHG 26 (171)
Q Consensus 14 ~i~C~~C~r~~H~ 26 (171)
...|+.|.+.|-.
T Consensus 9 ~~~C~~C~k~f~~ 21 (36)
T 2elr_A 9 THLCDMCGKKFKS 21 (36)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeecCcCCCCcCc
Confidence 4567778776643
No 257
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=22.64 E-value=19 Score=20.33 Aligned_cols=45 Identities=22% Similarity=0.400 Sum_probs=29.9
Q ss_pred ccccccCCCceeEecCCCCceecccccCccccCcCCCCCCCCCccC
Q psy5115 3 FHTLAVIEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCN 48 (171)
Q Consensus 3 ~~~~~~~~~~~~i~C~~C~r~~H~~C~~~~~~~~~~~~~~~Cp~C~ 48 (171)
+|.+-+=.+|-=-.|.-|.+-+.+.|-+-... .....-|.|..|+
T Consensus 14 iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~l-r~~k~~WvC~lC~ 58 (62)
T 2a20_A 14 ICHKTKFADGCGHNCSYCQTKFCARCGGRVSL-RSNKVMWVCNLCR 58 (62)
T ss_dssp SSSCSCCCSSCCEEBTTTCCEECTTSEEEEES-STTCEEEEEHHHH
T ss_pred hhccceeccCCCccccccCCeeecccCCEeee-cCCeEEEEehhhh
Confidence 34444434443467999999999999754332 2234469999996
No 258
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.52 E-value=28 Score=14.53 Aligned_cols=9 Identities=33% Similarity=0.892 Sum_probs=4.5
Q ss_pred ecCCCCcee
Q psy5115 16 CCDTCQDWF 24 (171)
Q Consensus 16 ~C~~C~r~~ 24 (171)
.|+.|++.|
T Consensus 4 ~C~~C~~~f 12 (29)
T 2m0e_A 4 KCPHCDKKF 12 (29)
T ss_dssp CCSSCCCCC
T ss_pred cCCCCCccc
Confidence 355555544
No 259
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.37 E-value=46 Score=15.68 Aligned_cols=12 Identities=25% Similarity=0.633 Sum_probs=6.9
Q ss_pred eEecCCCCceec
Q psy5115 14 YICCDTCQDWFH 25 (171)
Q Consensus 14 ~i~C~~C~r~~H 25 (171)
...|+.|++.|-
T Consensus 10 ~~~C~~C~k~f~ 21 (41)
T 2ept_A 10 VYECQECGKSFR 21 (41)
T ss_dssp CEECSSSCCEES
T ss_pred CeECCCCCCCcC
Confidence 455666666553
No 260
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.19 E-value=45 Score=15.79 Aligned_cols=11 Identities=36% Similarity=0.812 Sum_probs=5.7
Q ss_pred EecCCCCceec
Q psy5115 15 ICCDTCQDWFH 25 (171)
Q Consensus 15 i~C~~C~r~~H 25 (171)
..|+.|++.|-
T Consensus 12 ~~C~~C~k~f~ 22 (42)
T 2en2_A 12 YKCETCGARFV 22 (42)
T ss_dssp EECTTTCCEES
T ss_pred EeCCCcChhhC
Confidence 44555555543
No 261
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.73 E-value=27 Score=16.01 Aligned_cols=7 Identities=57% Similarity=1.678 Sum_probs=3.5
Q ss_pred CCCCccC
Q psy5115 42 YICPNCN 48 (171)
Q Consensus 42 ~~Cp~C~ 48 (171)
|.|+.|.
T Consensus 10 ~~C~~C~ 16 (37)
T 2elo_A 10 YSCPVCE 16 (37)
T ss_dssp CEETTTT
T ss_pred cCCCCCC
Confidence 4455554
No 262
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=21.60 E-value=48 Score=15.43 Aligned_cols=7 Identities=43% Similarity=1.345 Sum_probs=3.9
Q ss_pred CCCCccC
Q psy5115 42 YICPNCN 48 (171)
Q Consensus 42 ~~Cp~C~ 48 (171)
|.|+.|.
T Consensus 7 ~~C~~C~ 13 (39)
T 1njq_A 7 YTCSFCK 13 (39)
T ss_dssp EECTTTC
T ss_pred eECCCCC
Confidence 5555554
No 263
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.50 E-value=54 Score=17.45 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=9.6
Q ss_pred CCCCCCCCCccC
Q psy5115 37 DNIDEYICPNCN 48 (171)
Q Consensus 37 ~~~~~~~Cp~C~ 48 (171)
...+.|.|+.|-
T Consensus 7 ~~~gsW~C~~C~ 18 (47)
T 2ebr_A 7 GPEGSWDCELCL 18 (47)
T ss_dssp SCCSSCCCSSSC
T ss_pred CCCCeeECCeee
Confidence 346689999998
No 264
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.33 E-value=47 Score=16.15 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=7.7
Q ss_pred eEecCCCCceecc
Q psy5115 14 YICCDTCQDWFHG 26 (171)
Q Consensus 14 ~i~C~~C~r~~H~ 26 (171)
...|+.|++.|-.
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2emi_A 12 HYECSECGKAFIQ 24 (46)
T ss_dssp CEECSSSCCEESS
T ss_pred CCCCCCCCcccCC
Confidence 4566667666543
No 265
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=21.26 E-value=24 Score=18.77 Aligned_cols=10 Identities=40% Similarity=1.032 Sum_probs=7.2
Q ss_pred CCCCCCCccC
Q psy5115 39 IDEYICPNCN 48 (171)
Q Consensus 39 ~~~~~Cp~C~ 48 (171)
.+.|.|+.|.
T Consensus 11 ~D~WkC~~C~ 20 (46)
T 2c6a_A 11 ADYWKCTSCN 20 (46)
T ss_dssp GGCEECTTTC
T ss_pred cceEeccccc
Confidence 4568888886
No 266
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=20.94 E-value=31 Score=15.81 Aligned_cols=8 Identities=38% Similarity=1.568 Sum_probs=5.1
Q ss_pred CCCCCccC
Q psy5115 41 EYICPNCN 48 (171)
Q Consensus 41 ~~~Cp~C~ 48 (171)
.|.|+.|.
T Consensus 11 ~~~C~~C~ 18 (37)
T 1p7a_A 11 PFQCPDCD 18 (37)
T ss_dssp SBCCTTTC
T ss_pred CccCCCCC
Confidence 36677775
No 267
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=20.88 E-value=32 Score=21.72 Aligned_cols=18 Identities=11% Similarity=0.314 Sum_probs=14.0
Q ss_pred HHHHHHhhhCCCCCHHHH
Q psy5115 130 KIFDNCRYYNPRESPFFK 147 (171)
Q Consensus 130 li~~Na~~yn~~~s~~~~ 147 (171)
-|+.||...|...+.+|.
T Consensus 14 AMVsnAQLDNEKsal~Yq 31 (103)
T 4h22_A 14 AMVSNAQLDNEKTNFMYQ 31 (103)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHH
Confidence 589999999976665554
No 268
>3s93_A Tudor domain-containing protein 5; structural genomics consortium, SGC, transcription; 2.28A {Homo sapiens}
Probab=20.77 E-value=36 Score=21.35 Aligned_cols=58 Identities=24% Similarity=0.418 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHhCcCCCCCccCCCCCC-CCccccccCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy5115 63 RDFESLRKLMKQIQAHKSAWPFMEPVDPHE-APDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIF 132 (171)
Q Consensus 63 ~~~~~~~~~l~~l~~~~~~~~F~~pv~~~~-~p~Y~~~i~~Pmdl~~I~~kl~~~~Y~s~~~f~~Dv~li~ 132 (171)
+.++.+..+|..+.-... .+++... ..+|...+-.|+.+. +-.|.++++|+.++--++
T Consensus 7 ~~l~~vkk~irslLiS~K-----~gvtl~~L~~dYr~~~G~~iP~r-------~lGy~sl~~fL~sipdvv 65 (102)
T 3s93_A 7 RIQECLRKEIRSLLISTK-----DGLSPQELEKEYLLMVGNHLPLR-------ILGYRSTMELVLDMPDVV 65 (102)
T ss_dssp HHHHHHHHHHHHHHHSSS-----SCBCHHHHHHHHHHHHSSCCCTG-------GGTCSSHHHHHHTCTTTE
T ss_pred HHHHHHHHHHHHhheeCC-----CCcCHHHHHHHHHHHcCCcCCch-------hcCcCCHHHHHHcCCCeE
Confidence 345566677777665422 1222221 357888888888775 457999999999887544
No 269
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=20.72 E-value=50 Score=15.54 Aligned_cols=10 Identities=30% Similarity=0.803 Sum_probs=4.5
Q ss_pred EecCCCCcee
Q psy5115 15 ICCDTCQDWF 24 (171)
Q Consensus 15 i~C~~C~r~~ 24 (171)
..|+.|++.|
T Consensus 12 ~~C~~C~k~f 21 (42)
T 2epc_A 12 YLCGQCGKSF 21 (42)
T ss_dssp EECSSSCCEE
T ss_pred eECCCCCccc
Confidence 3444444444
No 270
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=20.66 E-value=40 Score=29.19 Aligned_cols=19 Identities=32% Similarity=0.859 Sum_probs=15.3
Q ss_pred CCceeEecCCCCceecccc
Q psy5115 10 EPKFYICCDTCQDWFHGRC 28 (171)
Q Consensus 10 ~~~~~i~C~~C~r~~H~~C 28 (171)
++.-++.|-.|.+||+.--
T Consensus 21 ~~~~~~~c~~~~~wfcn~~ 39 (802)
T 2xzl_A 21 SAKCVIKCNSCKKWFCNTK 39 (802)
T ss_dssp CTTTEEEETTTCCEEECCC
T ss_pred CCceEEEeCCCCcEecCCC
Confidence 3455999999999998754
No 271
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.51 E-value=53 Score=15.89 Aligned_cols=13 Identities=23% Similarity=0.577 Sum_probs=7.2
Q ss_pred eEecCCCCceecc
Q psy5115 14 YICCDTCQDWFHG 26 (171)
Q Consensus 14 ~i~C~~C~r~~H~ 26 (171)
...|+.|++.|-.
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eow_A 12 PYKCNECGKAFRA 24 (46)
T ss_dssp CEECTTSCCEESS
T ss_pred CeeccccCChhcC
Confidence 4556666665543
No 272
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=20.34 E-value=21 Score=22.33 Aligned_cols=35 Identities=20% Similarity=0.419 Sum_probs=17.7
Q ss_pred eEecCCCCc-----eecccccCccccCcC-CCCCCCCCccC
Q psy5115 14 YICCDTCQD-----WFHGRCVGILQSEAD-NIDEYICPNCN 48 (171)
Q Consensus 14 ~i~C~~C~r-----~~H~~C~~~~~~~~~-~~~~~~Cp~C~ 48 (171)
...|+.|.. .+.++|..+.+.... -...|+|..|.
T Consensus 48 ~~hC~~C~~~f~~~a~CPdC~q~LevLkACGAvdYFC~~ch 88 (101)
T 2jne_A 48 HARCRSCGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHGH 88 (101)
T ss_dssp EEEETTTCCEEEEEEECTTTCSBCEEEEETTEEEEEETTTT
T ss_pred EEECccccchhhccccCcchhhHHHHHHHhcCcchhhccCC
Confidence 556888863 445556543322111 12346666665
No 273
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=20.24 E-value=32 Score=21.62 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=15.6
Q ss_pred cccCCCceeEecCCCCceeccc
Q psy5115 6 LAVIEPKFYICCDTCQDWFHGR 27 (171)
Q Consensus 6 ~~~~~~~~~i~C~~C~r~~H~~ 27 (171)
+.|..+--.|+|++|..+ |..
T Consensus 30 ~aY~~GvViv~C~gC~n~-HlI 50 (100)
T 2e2z_A 30 QAYEKGTVLISCPHCKVR-HLI 50 (100)
T ss_dssp HHHHTSEEEEECTTTCCE-EES
T ss_pred HHhhCCEEEEEcCCCccc-eEe
Confidence 456677778899999876 554
No 274
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.11 E-value=51 Score=15.89 Aligned_cols=10 Identities=30% Similarity=0.810 Sum_probs=5.3
Q ss_pred EecCCCCcee
Q psy5115 15 ICCDTCQDWF 24 (171)
Q Consensus 15 i~C~~C~r~~ 24 (171)
..|+.|++.|
T Consensus 13 ~~C~~C~k~F 22 (44)
T 2epv_A 13 YECNECGKAF 22 (44)
T ss_dssp EECSSSCCEE
T ss_pred eECCCCCccc
Confidence 4455555554
No 275
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=20.07 E-value=29 Score=16.37 Aligned_cols=9 Identities=22% Similarity=0.944 Sum_probs=7.7
Q ss_pred CCCCCCccC
Q psy5115 40 DEYICPNCN 48 (171)
Q Consensus 40 ~~~~Cp~C~ 48 (171)
..|.||.|.
T Consensus 5 ~~W~C~~CT 13 (31)
T 1nj3_A 5 AMWACQHCT 13 (31)
T ss_dssp CCEECSSSC
T ss_pred ccccCCccc
Confidence 479999997
No 276
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=20.06 E-value=56 Score=20.00 Aligned_cols=17 Identities=12% Similarity=0.157 Sum_probs=13.3
Q ss_pred ceeEecCCCCceecccc
Q psy5115 12 KFYICCDTCQDWFHGRC 28 (171)
Q Consensus 12 ~~~i~C~~C~r~~H~~C 28 (171)
..+++|+.|.-|.-..-
T Consensus 43 e~iv~C~sCSL~IkV~y 59 (89)
T 2jr7_A 43 EDVATCPSCSLIIKVIY 59 (89)
T ss_dssp CCEEECTTTCCEEEEEC
T ss_pred CEEEECCCCccEEEEEE
Confidence 34899999999986544
No 277
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.01 E-value=51 Score=16.00 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=10.0
Q ss_pred eEecCCCCceecccc
Q psy5115 14 YICCDTCQDWFHGRC 28 (171)
Q Consensus 14 ~i~C~~C~r~~H~~C 28 (171)
...|+.|++.|-..-
T Consensus 12 ~~~C~~C~k~f~~~~ 26 (46)
T 2ep3_A 12 PYRCAECGKAFTDRS 26 (46)
T ss_dssp SEECSSSCCEESSHH
T ss_pred CeECCCCCchhCCHH
Confidence 567888887765433
Done!