RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5115
(171 letters)
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger,
alpha-helical bundle, dimethyl-lysine, bromodom
chromatin regulator, metal-binding, nucleus; HET: MLY;
1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A*
3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Length = 174
Score = 190 bits (483), Expect = 1e-62
Identities = 93/155 (60%), Positives = 125/155 (80%)
Query: 10 EPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNSSSNLANMKNLTPRDFESLR 69
E KFYI CD CQ+W+HGRCVGILQSEA+ IDEY+CP C ++ + + LT +D+E L+
Sbjct: 19 ESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDAMTVLTPLTEKDYEGLK 78
Query: 70 KLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMT 129
++++ +QAHK AWPF+EPVDP++APDYY V+KEPMDL T+E R+ ++ Y+KL+EF+ DMT
Sbjct: 79 RVLRSLQAHKMAWPFLEPVDPNDAPDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMT 138
Query: 130 KIFDNCRYYNPRESPFFKHAHQLEMFFVQKVKILR 164
KIFDNCRYYNP +SPF++ A LE FFVQK+K +
Sbjct: 139 KIFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGFK 173
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain,
histone binding, N-acetyl lysine; HET: ALY; 1.87A
{Saccharomyces cerevisiae} SCOP: a.29.2.1
Length = 121
Score = 146 bits (370), Expect = 4e-46
Identities = 45/113 (39%), Positives = 76/113 (67%), Gaps = 1/113 (0%)
Query: 53 NLANMKNLTPRDFESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELR 112
N+A P +++ ++ ++Q H +AWPF++PV+ E PDYY+ +KEPMDL T+E++
Sbjct: 4 NIAQRPKRGP-HDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIK 62
Query: 113 IAQQRYKKLSEFIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVKILRE 165
+ +Y+K+ +FI D +F+NCR YN + ++K+A++LE FF KVK + E
Sbjct: 63 LESNKYQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKEIPE 115
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 121
Score = 142 bits (360), Expect = 1e-44
Identities = 31/110 (28%), Positives = 54/110 (49%)
Query: 61 TPRDFESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKK 120
+ LRK ++Q+Q + F EPV E PDY + +K+PMD T++ + RY
Sbjct: 5 SSGFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLN 64
Query: 121 LSEFIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVKILREKLVEL 170
+F D I NC YN +++ F++ A +L ++ R + ++
Sbjct: 65 FDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKM 114
>3d7c_A General control of amino acid synthesis protein 5; GCN5,
bromodomain, structural genomics consortium, SGC,
HOST-virus interaction, nucleus; 2.06A {Homo sapiens}
SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A*
1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Length = 112
Score = 142 bits (359), Expect = 1e-44
Identities = 44/98 (44%), Positives = 64/98 (65%)
Query: 64 DFESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSE 123
+ +L+ L+ QI++H SAWPFMEPV EAPDYY V++ P+DLKT+ R+ + Y
Sbjct: 8 LYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKL 67
Query: 124 FIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVK 161
F+ D+ ++ NCR YNP +S + + A LE FF K+K
Sbjct: 68 FVADLQRVIANCREYNPPDSEYCRCASALEKFFYFKLK 105
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2,
KIAA1 WALP4, structural genomics consortium, SGC,
transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Length = 117
Score = 140 bits (356), Expect = 4e-44
Identities = 32/115 (27%), Positives = 58/115 (50%)
Query: 51 SSNLANMKNLTPRDFESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIE 110
S ++ K +D ++ +++ H+ AWPF+ PV+ P Y V+K+PMD TI
Sbjct: 1 SMSVKKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIR 60
Query: 111 LRIAQQRYKKLSEFIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVKILRE 165
+++ +Y L F D+ +FDNC +N +S + H + +F +K +
Sbjct: 61 EKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKWTDTFK 115
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics
consortium, SGC, CECR2, CAT eye syndrome chromosome
region candidate 2, bromodomain; 1.83A {Homo sapiens}
Length = 116
Score = 140 bits (354), Expect = 9e-44
Identities = 38/99 (38%), Positives = 60/99 (60%)
Query: 63 RDFESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLS 122
DF ++ K++ ++AHK +WPF+EPVD AP+YY ++K PMD+ ++E ++ Y
Sbjct: 16 DDFTAMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKE 75
Query: 123 EFIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVK 161
EF+ DM +F NCR YN S + K + LE F + +
Sbjct: 76 EFVNDMKTMFRNCRKYNGESSEYTKMSDNLERCFHRAMM 114
>3rcw_A Bromodomain-containing protein 1; transcription, structural
genomics, structural consortium, SGC; 2.21A {Homo
sapiens}
Length = 135
Score = 139 bits (353), Expect = 2e-43
Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 54 LANMKNLTPRDFESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRI 113
+A LTP LR ++ Q+Q A F +PV E PDY + +K PMD T+ R+
Sbjct: 5 VAMELRLTP-LTVLLRSVLDQLQDKDPARIFAQPVSLKEVPDYLDHIKHPMDFATMRKRL 63
Query: 114 AQQRYKKLSEFIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVKILREKL 167
Q YK L EF D I DNC YN R++ F++ A +L ++ R ++
Sbjct: 64 EAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREV 117
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9
isoform 1, LAVS3040, rhabdomyosarcoma antigen
MU-RMS-40.8; 2.23A {Homo sapiens}
Length = 123
Score = 137 bits (348), Expect = 7e-43
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 50 SSSNLANMKNLTPRDFESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTI 109
S L+ TP + L ++Q+Q F PV AP Y ++K PMD T+
Sbjct: 1 SMLKLSAENESTP-IQQLLEHFLRQLQRKDPHGFFAFPVTDAIAPGYSMIIKHPMDFGTM 59
Query: 110 ELRIAQQRYKKLSEFIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVKILREKLVE 169
+ +I YK ++EF D + DN YN ++ ++K A ++ + + +E+L+
Sbjct: 60 KDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYYKLAKKILHAGFKMMS--KERLLA 117
Query: 170 LK 171
LK
Sbjct: 118 LK 119
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1
(TAF1); structural genomics consortium, SGC; 1.89A {Homo
sapiens} PDB: 3hmh_A
Length = 158
Score = 138 bits (348), Expect = 2e-42
Identities = 33/101 (32%), Positives = 53/101 (52%)
Query: 71 LMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTK 130
+ +++ A +WPF PV+ PDYY V+ PMDL+TI I++ +Y+ F+ D+
Sbjct: 38 VTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNL 97
Query: 131 IFDNCRYYNPRESPFFKHAHQLEMFFVQKVKILREKLVELK 171
I N YN ES + K A ++ Q + E L +L+
Sbjct: 98 ILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQLE 138
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix
bundle, transcription; NMR {Homo sapiens}
Length = 117
Score = 135 bits (342), Expect = 5e-42
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 57 MKNLTPRDF-ESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQ 115
M+ + E+L +LM+Q+Q + F PV AP Y ++K PMD T++ +I
Sbjct: 1 MEEVEQTPLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKN 60
Query: 116 QRYKKLSEFIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVKILREKLVE 169
Y+ + E + + N YN E+ ++K A +L ++ + R +
Sbjct: 61 NDYQSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLLHSGMKILSQERLEHHH 114
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural
genomics, NPPSFA; 2.50A {Homo sapiens}
Length = 135
Score = 133 bits (336), Expect = 7e-41
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 45 PNCNNSSSNLANMKNLTPRDFESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPM 104
+ ++ + LTP D +L+ + H+ + F +PV PDYY ++K PM
Sbjct: 2 SSGSSGKKKTEGLVKLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPM 60
Query: 105 DLKTIE--LRIAQQRYKKLSEFIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVK 161
DL TI+ L+ Y K +F+ D IF NC +N +S +LE +F + +K
Sbjct: 61 DLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLK 119
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor,
histone, epigenetic reader; HET: 1GH; 1.60A {Homo
sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A*
4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A*
2ydw_A* 2yw5_A
Length = 154
Score = 133 bits (337), Expect = 1e-40
Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 2/115 (1%)
Query: 58 KNLTPRDFESLRKLMKQIQAHKSAWPFMEPVDPH--EAPDYYNVVKEPMDLKTIELRIAQ 115
+T + + +MK + H+ AWPF +PVD PDY+ ++K+PMD+ TI+ R+
Sbjct: 27 GRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLEN 86
Query: 116 QRYKKLSEFIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVKILREKLVEL 170
Y SE + D +F NC YN A LE F+QKV + ++ EL
Sbjct: 87 NYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQEEQEL 141
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural
genomics consortium, SGC, signaling protein; 1.35A {Homo
sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A*
3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A*
3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A*
2nxb_A ...
Length = 127
Score = 131 bits (332), Expect = 3e-40
Identities = 41/114 (35%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Query: 50 SSSNLANMKNLTPRDFESLRKLMKQIQAHKSAWPFMEPVDPH--EAPDYYNVVKEPMDLK 107
+SN K T + LR ++K + H+ AWPF +PVD PDYY ++K PMD+
Sbjct: 8 ETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMG 67
Query: 108 TIELRIAQQRYKKLSEFIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVK 161
TI+ R+ Y E I D +F NC YN A LE F+QK+
Sbjct: 68 TIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKIN 121
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger,
bromodomain, H4K16 acetylation, breast C
transcription-protein binding complex; HET: ALY; 1.70A
{Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Length = 184
Score = 132 bits (334), Expect = 5e-40
Identities = 46/166 (27%), Positives = 70/166 (42%), Gaps = 21/166 (12%)
Query: 15 ICCDTCQDWFHGRCVGILQSEADNIDEYICPNC-----------------NNSSSNLANM 57
+CC+ C FH C + E+IC C N+ +
Sbjct: 17 LCCEKCPKVFHLSCHVPTLTNFP-SGEWICTFCRDLSKPEVEYDCDAPSHNSEKKKTEGL 75
Query: 58 KNLTPRDFESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIE--LRIAQ 115
LTP D +L+ + H+ + F +PV PDYY ++K PMDL TI+ L+
Sbjct: 76 VKLTPIDKRKCERLLLFLYCHEMSLAFQDPVPL-TVPDYYKIIKNPMDLSTIKKRLQEDY 134
Query: 116 QRYKKLSEFIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVK 161
Y K +F+ D IF NC +N +S +LE +F + +K
Sbjct: 135 SMYSKPEDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEELLK 180
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem
bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS
factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Length = 265
Score = 135 bits (340), Expect = 6e-40
Identities = 36/159 (22%), Positives = 62/159 (38%), Gaps = 9/159 (5%)
Query: 13 FYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNSSSNLANMKNLTPRDFESLRKLM 72
+ D + + + L + + F +
Sbjct: 96 LTQISQSMLDLCDEKLKEKED---------KLARLEKAINPLLDDDDQVAFSFILDNIVT 146
Query: 73 KQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIF 132
+++ A +WPF PV+ PDYY V+ PMDL+TI I++ +Y+ F+ D+ I
Sbjct: 147 QKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLIL 206
Query: 133 DNCRYYNPRESPFFKHAHQLEMFFVQKVKILREKLVELK 171
N YN ES + K A ++ Q + E L +L+
Sbjct: 207 ANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQLE 245
Score = 118 bits (297), Expect = 2e-33
Identities = 23/101 (22%), Positives = 45/101 (44%)
Query: 66 ESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFI 125
L ++ ++ + +PF PV+ DYY ++ PMDL+T+ + ++ Y EF
Sbjct: 17 SILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFR 76
Query: 126 GDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVKILREK 166
+ I N YN + + + + +K+K +K
Sbjct: 77 EHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDK 117
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics,
structural genomi consortium, SGC; 2.50A {Plasmodium
falciparum 3D7}
Length = 166
Score = 131 bits (331), Expect = 1e-39
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Query: 49 NSSSNLANMKNLTPRDFESLRKLMKQIQAHKSAWPFMEPVDP--HEAPDYYNVVKEPMDL 106
+SS + + +L+ + ++ F + VD PDYY+V+K PM
Sbjct: 7 HSSGRENLYFQGNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSF 66
Query: 107 KTIELRIAQQRYKKLSEFIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVKILREK 166
I+ ++ + +Y SEF+ D+ IFDNC YN S +E +F ++ ++
Sbjct: 67 SCIKTKLKKGQYAYPSEFVKDVQLIFDNCSLYNTSNSVVAITGKNIETYFNNQLIVMGYN 126
Query: 167 LVELK 171
LK
Sbjct: 127 NFILK 131
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein
complex, bromodomain, transcription, transcr regulation,
chromatin regulator, transcription-C complex; 3.30A
{Homo sapiens}
Length = 292
Score = 134 bits (339), Expect = 1e-39
Identities = 36/159 (22%), Positives = 59/159 (37%), Gaps = 9/159 (5%)
Query: 13 FYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNSSSNLANMKNLTPRDFESLRKLM 72
+ D + A + F +
Sbjct: 129 LTQISQSMLDLCDEKLKEKEDKLARLEKAINPLLD---------DDDQVAFSFILDNIVT 179
Query: 73 KQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIF 132
+++ A +WPF PV+ PDYY V+ PMDL+TI I++ +Y+ F+ D+ I
Sbjct: 180 QKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLIL 239
Query: 133 DNCRYYNPRESPFFKHAHQLEMFFVQKVKILREKLVELK 171
N YN ES + K A ++ Q + E L +L+
Sbjct: 240 ANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQLE 278
Score = 115 bits (289), Expect = 4e-32
Identities = 22/97 (22%), Positives = 43/97 (44%)
Query: 65 FESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEF 124
L ++ ++ + +PF PV+ DYY ++ PMDL+T+ + ++ Y EF
Sbjct: 49 SSILESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEF 108
Query: 125 IGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVK 161
+ I N YN + + + + +K+K
Sbjct: 109 REHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLK 145
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics
consortium, SGC, cell cycle progression, signal
transduction, apoptosis; 1.74A {Homo sapiens}
Length = 123
Score = 128 bits (323), Expect = 4e-39
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Query: 66 ESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFI 125
+ ++L+ I + + PF +PVD E PDY +++ PMD T+ + Y EF
Sbjct: 13 KQCKELVNLIFQCEDSEPFRQPVDLVEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFC 72
Query: 126 GDMTKIFDNCRYYNPRE-SPFFKHAHQLEMFFVQKVKILREKL 167
D+ IF N + Y P + S + +L F +K+K +
Sbjct: 73 KDIRLIFSNAKAYTPNKRSKIYSMTLRLSALFEEKMKKISSDF 115
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP,
crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST,
bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens}
PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A*
1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Length = 119
Score = 126 bits (318), Expect = 3e-38
Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 68 LRKLMKQIQAHKSAWPFMEPVDP--HEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFI 125
L L +Q + PF +PVDP PDY+++VK PMDL TI+ ++ +Y++ +++
Sbjct: 20 LEALYRQ---DPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYV 76
Query: 126 GDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVKILREKL 167
D+ +F+N YN + S +K +L F Q++ + + L
Sbjct: 77 DDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQSL 118
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent
small and homeotic disks prote homolog, lysine
N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Length = 126
Score = 125 bits (315), Expect = 8e-38
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
Query: 61 TPRDFESLRKLMKQIQAHK------SAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIA 114
R + +++ I ++K A P + + DYY + +P+DL TIE +I
Sbjct: 7 AARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEKISDPLDLITIEKQIL 66
Query: 115 QQRYKKLSEFIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVKILREKLVEL 170
YK + F DM K+F N Y R+SP + +L + ++ E+
Sbjct: 67 TGYYKTVEAFDADMLKVFRNAEKYYGRKSPVGRDVCRLRKAYYNARHEASAQIDEI 122
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain
interacting protein, DCAF14 DDB1 and CUL4 associated
factor 14, SGC; 2.25A {Homo sapiens}
Length = 135
Score = 125 bits (315), Expect = 9e-38
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Query: 68 LRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGD 127
+L+ I + + PF +PVD E PDY +++ PMD T+ + Y+ E D
Sbjct: 26 CEELLNLIFQCEDSEPFRQPVDLLEYPDYRDIIDTPMDFATVRETLEAGNYESPMELCKD 85
Query: 128 MTKIFDNCRYYNPRE-SPFFKHAHQLEMFFVQKVKILREKLVE 169
+ IF N + Y P + S + + +L FF + + +
Sbjct: 86 VRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSVLSDYKS 128
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine
binding domain, signaling protein; 1.20A {Mus musculus}
PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A
3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Length = 120
Score = 123 bits (312), Expect = 2e-37
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 55 ANMKNLTPRDFESLRKLMKQIQAHK---SAWPFMEPVDPHE--APDYYNVVKEPMDLKTI 109
M + + ++K++ A K AWPF +PVD DY +++K PMD+ TI
Sbjct: 1 GAMGSKISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTI 60
Query: 110 ELRIAQQRYKKLSEFIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVKILREKLVE 169
+ ++ + Y+ EF D+ +F NC YNP + A +L+ F + + ++ E
Sbjct: 61 KSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEPEE 120
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1,
chromatin remodelling, acely-lysine binding,
protein-protein interactions; 1.50A {Homo sapiens} PDB:
3uvd_A 2h60_A
Length = 129
Score = 124 bits (312), Expect = 3e-37
Identities = 20/102 (19%), Positives = 50/102 (49%)
Query: 65 FESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEF 124
+++ K + + F++ E P+YY ++++P+D K I+ RI +Y+ L++
Sbjct: 20 VDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDL 79
Query: 125 IGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVKILREK 166
D+ + N + +N S ++ + L+ F + + ++
Sbjct: 80 EKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKE 121
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all
alpha protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 123
Score = 123 bits (311), Expect = 3e-37
Identities = 21/107 (19%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 61 TPRDFESLRKLMKQIQAHKS------AWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIA 114
P+ + + ++ + +K + F++ E P+YY ++++P+D K I+ RI
Sbjct: 11 PPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIR 70
Query: 115 QQRYKKLSEFIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVK 161
+Y+ L + D+ + N + +N S ++ + L+ F +
Sbjct: 71 NHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQ 117
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo0ID, PBRM1, BRG associated factor 180,
structural genomics, SGC; 1.63A {Homo sapiens}
Length = 116
Score = 122 bits (307), Expect = 1e-36
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 6/113 (5%)
Query: 60 LTPRDFESLRKLMKQIQAHKS------AWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRI 113
+T +L I+ +K F+ PDYY VV +P+DL I+ ++
Sbjct: 2 MTVDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKL 61
Query: 114 AQQRYKKLSEFIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVKILREK 166
+ Y ++ D +F+N + Y +SP +K A +L +++ +K
Sbjct: 62 KMEEYDDVNLLTADFQLLFNNAKSYYKPDSPEYKAACKLWDLYLRTRNEFVQK 114
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo-1D, PBRM1, BRG associated factor 180,
structural genomics consortium, SGC; 2.13A {Homo
sapiens}
Length = 150
Score = 122 bits (309), Expect = 1e-36
Identities = 32/97 (32%), Positives = 44/97 (45%)
Query: 65 FESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEF 124
F + + + + FM + PDYY ++ EPMDLK IE I +Y
Sbjct: 33 FNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRNDKYAGEEGM 92
Query: 125 IGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVK 161
I DM +F N R+YN S + AH LE +K K
Sbjct: 93 IEDMKLMFRNARHYNEEGSQVYNDAHILEKLLKEKRK 129
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo-1D, PBRM1, BRG associated factor 180,
structural genomics consortium, SGC; 1.66A {Homo
sapiens} PDB: 3g0j_A 2yqd_A
Length = 124
Score = 121 bits (305), Expect = 2e-36
Identities = 23/115 (20%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 61 TPRDFESLRKLMKQI----------QAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIE 110
+ +++ + ++ + + + F+ E PDYY +K+PMD++ I
Sbjct: 9 KSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEKIR 68
Query: 111 LRIAQQRYKKLSEFIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVKILRE 165
+ +Y+ + + D +F+N YN ES +K A L ++ + L
Sbjct: 69 SHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRDLEG 123
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural
genomics consortium, SGC, signaling protein; 1.89A {Homo
sapiens} PDB: 2yem_A*
Length = 130
Score = 121 bits (305), Expect = 3e-36
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 58 KNLTPRDFESLRKLMKQIQAHK---SAWPFMEPVDPHE--APDYYNVVKEPMDLKTIELR 112
+ + ++K++ A K AWPF +PVD DY +++K PMD+ TI+ +
Sbjct: 17 SSKVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSK 76
Query: 113 IAQQRYKKLSEFIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVKILREK 166
+ + Y+ EF D+ +F NC YNP + A +L+ F + + ++
Sbjct: 77 LEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDE 130
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo01D, PBRM1, BRG associated factor 180,
structural genomics consortium, SGC; 2.20A {Homo
sapiens}
Length = 130
Score = 121 bits (305), Expect = 4e-36
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Query: 65 FESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEF 124
++++R Q A PF + PDYY +K P+ L+ I ++ Q Y+ L
Sbjct: 26 YDTVRSCRNN-QGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQIRTKLKNQEYETLDHL 84
Query: 125 IGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVKILREK 166
D+ +F+N + YN S +K +L+ K K L +
Sbjct: 85 ECDLNLMFENAKRYNVPNSAIYKRVLKLQQVMQAKKKELARR 126
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear
coregulator cancer-associated Pro2000 protein, two AAA
DOMA containing protein; 1.95A {Homo sapiens} PDB:
3lxj_A
Length = 130
Score = 120 bits (303), Expect = 5e-36
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 68 LRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGD 127
LR + ++ K F +PVDP E PDY V+K+PMDL ++ +I +Y + +++ D
Sbjct: 15 LRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRD 74
Query: 128 MTKIFDNCRYYNPRESP----FFKHAHQLEMFFVQKVK-ILREKLVEL 170
+ I N YNP P A L +K L E +L
Sbjct: 75 IDLICSNALEYNPDRDPGDRLIRHRACALRDTAYAIIKEELDEDFEQL 122
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing,
bromodomain, chromatin RE DNA-binding, nucleus,
phosphoprotein, transcription; 1.50A {Homo sapiens} PDB:
2ktb_B* 3hmf_A
Length = 120
Score = 118 bits (299), Expect = 2e-35
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Query: 66 ESLRKLMKQIQAHKS------AWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYK 119
E L +L++ I + + F + + PDYY ++KEP+DLKTI RI YK
Sbjct: 11 EILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKTIAQRIQNGSYK 70
Query: 120 KLSEFIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVKILRE 165
+ D+ + N + YN S FK A+ ++ F K +
Sbjct: 71 SIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEH 116
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain,
chromatin, remodeler, RSC, acetylation, transcription,
chromatin regulator, nucleus, phosphorylation; HET: ALY;
1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Length = 311
Score = 122 bits (307), Expect = 1e-34
Identities = 34/156 (21%), Positives = 58/156 (37%), Gaps = 4/156 (2%)
Query: 10 EPKFYICCDTCQ----DWFHGRCVGILQSEADNIDEYICPNCNNSSSNLANMKNLTPRDF 65
E I ++ Q F L+ E + + + + +
Sbjct: 106 EYDSLIVKNSMQVVMLIEFEVLKAKNLKRNYLINSEVKAKLLHYLNKLVDATEKKINQAL 165
Query: 66 ESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFI 125
K + PFME VD E P+YY +V PM L ++ + +Y K+ +FI
Sbjct: 166 LGASSPKNLDDKVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFI 225
Query: 126 GDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVK 161
DM +F N +N + +K A L +F ++
Sbjct: 226 IDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQ 261
Score = 100 bits (249), Expect = 4e-26
Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 3/107 (2%)
Query: 61 TPRDFESLRKLMKQI--QAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRY 118
P+ + + + + F++ P YY +++PM + I+ R +
Sbjct: 26 IPKFNRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRDYEY-E 84
Query: 119 KKLSEFIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVKILRE 165
S F+ D+ + NC+ YN +S K++ Q+ M +V +
Sbjct: 85 DGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEFEVLKAKN 131
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker,
histone H3; bromodomain, remodeler, acetylation,
transcription; HET: ALY; 2.20A {Saccharomyces
cerevisiae} PDB: 2r0v_A*
Length = 361
Score = 123 bits (309), Expect = 1e-34
Identities = 33/156 (21%), Positives = 55/156 (35%), Gaps = 4/156 (2%)
Query: 10 EPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNSSSNLANMKNLTPRDFES-- 67
E I ++ Q + L + + T +
Sbjct: 156 EYDSLIVKNSMQVVMLIEFEVLKAKNLKRNYLINSEVKAKLLHYLNKLVDATEKKINQAL 215
Query: 68 --LRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFI 125
K + PFME VD E P+YY +V PM L ++ + +Y K+ +FI
Sbjct: 216 LGASSPKNLDDKVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFI 275
Query: 126 GDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVK 161
DM +F N +N + +K A L +F ++
Sbjct: 276 IDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQ 311
Score = 98.3 bits (244), Expect = 3e-25
Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 3/112 (2%)
Query: 49 NSSSNLANMKNLTPRDFESLRKLMKQIQAHKS--AWPFMEPVDPHEAPDYYNVVKEPMDL 106
N S L P+ + + + F++ P YY +++PM +
Sbjct: 64 NPKSELFLDDWHIPKFNRFISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSI 123
Query: 107 KTIELRIAQQRYKKLSEFIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQ 158
I+ R + S F+ D+ + NC+ YN +S K++ Q+ M
Sbjct: 124 NEIKSRDYEY-EDGPSNFLLDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEF 174
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 131
Score = 109 bits (274), Expect = 1e-31
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Query: 68 LRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGD 127
LR + K++ K F +PV DY V+KEPMDL T+ +I + Y +F+ D
Sbjct: 17 LRDVTKRLATDKRFNIFSKPVS-----DYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKD 71
Query: 128 MTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVKILREKLVE 169
+ I N YNP + P K + ++
Sbjct: 72 IDLICSNALEYNPDKDPGDKIIRHRACTLKDTAHAIIAAELD 113
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain,
TGF-beta, epigenetics, methylation, K9ME3, K14AC,
transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB:
3u5m_A* 3u5o_A* 3u5p_A*
Length = 207
Score = 104 bits (261), Expect = 6e-29
Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 17/167 (10%)
Query: 14 YICCDTCQDWFHGRCVGILQSEADNID-------------EYICPNCNNSSSNLANMKNL 60
+CC+ C FH C + D + S + L
Sbjct: 19 LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVEYDCDNLQHSKKGKTAQGL 78
Query: 61 TPRDFESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQ---QR 117
+P D +L+ + H+ + F EPV P+YY ++K+PMDL T++ ++ + Q
Sbjct: 79 SPVDQRKCERLLLYLYCHELSIEFQEPVPAS-IPNYYKIIKKPMDLSTVKKKLQKKHSQH 137
Query: 118 YKKLSEFIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVKILR 164
Y+ +F+ D+ IF NC +N +A E+ ++ +
Sbjct: 138 YQIPDDFVADVRLIFKNCERFNEMMKVVQVYADTQEINLKADSEVAQ 184
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain,
leukemia, apoptosis, chromati regulator, DNA-binding,
isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A*
3lqj_A* 2kyu_A
Length = 183
Score = 98.1 bits (243), Expect = 2e-26
Identities = 25/156 (16%), Positives = 57/156 (36%), Gaps = 18/156 (11%)
Query: 12 KFYICCDTCQDWFHGRCVGILQSEADNI------DEYICPNCNNSSSNLANMKNLTPRDF 65
+ C C W H +C + + + Y C NC L
Sbjct: 19 SKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA-EWRLALEKELQ 77
Query: 66 ESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFI 125
SL++++ + ++ + ++P+DL+ ++ ++ Q Y + EF
Sbjct: 78 ISLKQVLTALLNSRTTSHLLRYRQ-----------QQPLDLEGVKRKMDQGNYTSVLEFS 126
Query: 126 GDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVK 161
D+ KI + + K ++ FF+++++
Sbjct: 127 DDIVKIIQAAINSDGGQPEIKKANSMVKSFFIRQME 162
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger,
bromodomain, SUMO, acetylation, alternative splicing,
metal-binding, nucleus; NMR {Homo sapiens}
Length = 189
Score = 95.7 bits (237), Expect = 1e-25
Identities = 24/164 (14%), Positives = 56/164 (34%), Gaps = 21/164 (12%)
Query: 15 ICCDTCQDWFHGRCVGILQSEADNIDEYICPNC--------------NNSSSNLANMKNL 60
+ C+ C+ FH C + +E+ C C + + + + L
Sbjct: 15 VMCNQCEFCFHLDCHLPALQDV-PGEEWSCSLCHVLPDLKEEDGSLSLDGADSTGVVAKL 73
Query: 61 TPRDFESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQR--- 117
+P + +++ + H+ P + + +DL I R+ ++
Sbjct: 74 SPANQRKCERVLLALFCHEPCRPLHQLATDS--TFSLDQPGGTLDLTLIRARLQEKLSPP 131
Query: 118 YKKLSEFIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVK 161
Y EF D+ ++F ++ + L+ FF ++
Sbjct: 132 YSSPQEFAQDVGRMFKQFNKLTEDKA-DVQSIIGLQRFFETRMN 174
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180,
polybromo0ID, PBRM1, BRG associated factor 180,
structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Length = 147
Score = 91.9 bits (228), Expect = 2e-24
Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 10/107 (9%)
Query: 66 ESLRKLMKQIQAHKSAW------PFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYK 119
E + L + +H+ E P P++ N K P+ I + RY+
Sbjct: 10 ELIHNLFVSVMSHQDDEGRCYSDSLAEI--PAVDPNFPN--KPPLTFDIIRKNVENNRYR 65
Query: 120 KLSEFIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVKILREK 166
+L F M ++ + R N +S ++ A +L+ FF++ L +
Sbjct: 66 RLDLFQEHMFEVLERARRMNRTDSEIYEDAVELQQFFIKIRDELCKN 112
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 64
Score = 72.2 bits (177), Expect = 7e-18
Identities = 21/41 (51%), Positives = 31/41 (75%)
Query: 12 KFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNSSS 52
+F+ICCD C+ WFHG+CV I + A++I +Y CP+C+N S
Sbjct: 20 EFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSG 60
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger,
histone-binding, NUC protein; HET: M3L; 1.78A {Homo
sapiens}
Length = 75
Score = 65.3 bits (159), Expect = 6e-15
Identities = 22/36 (61%), Positives = 27/36 (75%)
Query: 12 KFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNC 47
+F I CD C+DWFHG CVG+ + EA +ID Y CPNC
Sbjct: 23 RFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNC 58
>1wep_A PHF8; structural genomics, PHD domain, riken structural
genomics/proteomics initiative, RSGI, DNA binding
protein; NMR {Mus musculus} SCOP: g.50.1.2
Length = 79
Score = 64.6 bits (157), Expect = 1e-14
Identities = 21/35 (60%), Positives = 24/35 (68%)
Query: 13 FYICCDTCQDWFHGRCVGILQSEADNIDEYICPNC 47
F I C CQDWFHG CVGI + A +ID Y CP+C
Sbjct: 26 FMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDC 60
>1wem_A Death associated transcription factor 1; structural genomics, PHD
domain, death inducer- obliterator 1(DIO-1); NMR {Mus
musculus} SCOP: g.50.1.2
Length = 76
Score = 63.8 bits (155), Expect = 2e-14
Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 4/40 (10%)
Query: 12 KFYICCDTCQDWFHGRCVGILQSEADNID----EYICPNC 47
+F ICCD C++WFHG CVGI ++ ++ +YICPNC
Sbjct: 28 RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNC 67
>3pur_A Lysine-specific demethylase 7 homolog;
oxidoreductase-oxidoreductase inhibitor complex; HET:
2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A*
3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Length = 528
Score = 65.5 bits (158), Expect = 3e-13
Identities = 18/79 (22%), Positives = 33/79 (41%)
Query: 13 FYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNSSSNLANMKNLTPRDFESLRKLM 72
+I CD+CQ W+H C G+ Q E +++ CP C + + K + P +
Sbjct: 57 QWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPHTGHSIRYKVVAPHRYRWYSPNE 116
Query: 73 KQIQAHKSAWPFMEPVDPH 91
K + + ++E
Sbjct: 117 KHLGIEVGSKTWIEDFITR 135
>3kv5_D JMJC domain-containing histone demethylation protein 1D;
epigenetics, histone CODE, jumonji lysine demethylase,
metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo
sapiens} PDB: 3kv6_A*
Length = 488
Score = 65.1 bits (157), Expect = 5e-13
Identities = 24/113 (21%), Positives = 42/113 (37%)
Query: 12 KFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNSSSNLANMKNLTPRDFESLRKL 71
+F I CD C+DWFHG CVG+ + A +ID Y CPNC + K +
Sbjct: 50 RFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSSLMKKRRNWHRHDYTEID 109
Query: 72 MKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEF 124
F++ + P ++ + + + + + +
Sbjct: 110 DGSKPVQAGTRTFIKELRSRVFPSADEIIIKMHGSQLTQRYLEKHGFDVPIMV 162
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain,
nuclear protein, structural structural genomics
consortium, SGC, protein binding; HET: M3L; 1.67A {Homo
sapiens}
Length = 52
Score = 57.8 bits (140), Expect = 2e-12
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 13 FYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNS 50
I C+ C W H C I +S + ++C C +S
Sbjct: 17 PMIECNECHTWIHLSCAKIRKSNVP--EVFVCQKCRDS 52
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 72
Score = 57.6 bits (139), Expect = 4e-12
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 12 KFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNC 47
+ + CD C W H RC+GI ++A +++C C
Sbjct: 29 ERMLACDGCGVWHHTRCIGINNADAL-PSKFLCFRC 63
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium,
SGC, structural genom type zinc finger, protein
binding, zinc ION binding; 1.85A {Homo sapiens}
Length = 68
Score = 57.2 bits (138), Expect = 5e-12
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 13 FYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNS 50
I C+ C W H C I +S + ++C C +S
Sbjct: 32 PMIECNECHTWIHLSCAKIRKSNVP--EVFVCQKCRDS 67
>2k16_A Transcription initiation factor TFIID subunit 3; protein,
alternative splicing, metal-binding, nucleus,
phosphoprotein, transcription regulation; NMR {Mus
musculus} PDB: 2k17_A*
Length = 75
Score = 56.8 bits (137), Expect = 1e-11
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 13 FYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNS 50
I CD C DW+H CVGI+ + + + + CP C N
Sbjct: 32 PMIGCDDCDDWYHWPCVGIMAAPPEEMQ-WFCPKCANK 68
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone
modifications, jumonji demethylase, mental retardation,
metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo
sapiens}
Length = 447
Score = 60.4 bits (145), Expect = 2e-11
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Query: 12 KFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNSSSNLANMKNLTPRDFESLRKL 71
+F I CD CQDWFHG CVG+ + +A +ID Y CPNC R
Sbjct: 18 RFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG---PSIMKKRRGSSKGHDT 74
Query: 72 MKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIE 110
K + F+ + V+ +P +
Sbjct: 75 HKGKPVKTGSPTFVRELRSRTFDSSDEVILKPTGNQLTV 113
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification,
leukemia, alternative splicing, chromatin regulator,
developmental protein; NMR {Homo sapiens} PDB: 2kgi_A*
3gl6_A*
Length = 52
Score = 54.5 bits (131), Expect = 4e-11
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 13 FYICCD-TCQDWFHGRCVGILQSEADNIDEYICPNC 47
++ CD C +WFH CVG+ A+N D YIC NC
Sbjct: 17 DWVQCDGGCDEWFHQVCVGVSPEMAENED-YICINC 51
>1wew_A DNA-binding family protein; structural genomics, PHD domain,
riken structural genomics/proteomics initiative, RSGI,
DNA binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 78
Score = 46.6 bits (110), Expect = 8e-08
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 10 EPKFYICCD--TCQDWFHGRCVGILQSEADNI----DEYICPNCNNSS 51
E I C+ C W H CV + D + + C C +S
Sbjct: 26 ETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion
protein, signal transduction, transcription, metal BI
WNT proteins; 1.90A {Homo sapiens}
Length = 105
Score = 47.2 bits (111), Expect = 9e-08
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 15 ICCDTCQDWFHGRCVGILQS-----EADNIDEYICPNCNNSSSNLANMK 58
+C +CQ WFH C G+ +S + + C C + +
Sbjct: 21 LCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEGSGSGS 69
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain
(PHD), histone binding; NMR {Oryza sativa japonica
group}
Length = 68
Score = 43.8 bits (103), Expect = 7e-07
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 5/41 (12%)
Query: 12 KFYICCDT--CQDWFHGRCVGILQSEADNI---DEYICPNC 47
I C+ CQ W H CV I ++ + C C
Sbjct: 22 DSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELC 62
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD
domain, ING1-like protein, DNA binding protein, NPPSFA;
NMR {Mus musculus} SCOP: g.50.1.2
Length = 91
Score = 42.8 bits (100), Expect = 3e-06
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 15 ICCDT---CQDWFHGRCVGILQSEADNIDEYICPNC 47
I CD +WFH CVG+ ++ CP C
Sbjct: 50 IGCDNPDCSIEWFHFACVGLTTKP---RGKWFCPRC 82
>1wen_A Inhibitor of growth family, member 4; ING1-like protein;
structural genomics, PHD domain, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.50.1.2 PDB: 1wes_A
Length = 71
Score = 41.9 bits (98), Expect = 3e-06
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 15 ICCDT---CQDWFHGRCVGILQSEADNIDEYICPNC 47
I CD +WFH CVG+ ++ CP C
Sbjct: 30 IGCDNPDCSIEWFHFACVGLTTKP---RGKWFCPRC 62
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation,
alternative splicing, anti-oncogene, cell cycle, coiled
C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A
{Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A
2qic_A*
Length = 60
Score = 38.3 bits (89), Expect = 6e-05
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 15 ICCDT---CQDWFHGRCVGILQSEADNIDEYICPNC 47
I CD +WFH CVG+ ++ CP C
Sbjct: 24 IGCDNPDCSIEWFHFACVGLTTKP---RGKWFCPRC 56
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING,
epigenetics, alternative splicing, metal-binding,
phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens}
PDB: 2pnx_A*
Length = 59
Score = 38.3 bits (89), Expect = 6e-05
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Query: 15 ICCDT---CQDWFHGRCVGILQSEADNIDEYICPNC 47
I CD +WFH CV + ++ CP C
Sbjct: 23 IGCDNPDCPIEWFHFACVDL---TTKPKGKWFCPRC 55
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 70
Score = 37.9 bits (88), Expect = 1e-04
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 15 ICCDTCQ---DWFHGRCVGILQSEADNIDEYICPNC 47
+ CD +WFH CVG+ ++ CP C
Sbjct: 20 VGCDNQDCPIEWFHYGCVGL---TEAPKGKWYCPQC 52
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling
pathway, WNT signaling complex, chromosomal
rearrangement, signaling protein; 1.59A {Homo sapiens}
PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Length = 65
Score = 36.6 bits (84), Expect = 3e-04
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 15 ICCDT-CQDWFHGRCVGILQS-----EADNIDEYICPNC 47
I C+ CQ WFH C G+ ++ A+ + C C
Sbjct: 25 ILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTC 63
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene
regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Length = 62
Score = 34.5 bits (79), Expect = 0.002
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 6/37 (16%)
Query: 14 YICCDT---CQDWFHGRCVGILQSEADNIDEYICPNC 47
I CD +WFH CV + ++ CP C
Sbjct: 24 MIGCDNEQCPIEWFHFSCVSLTYKPK---GKWYCPKC 57
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced,
nucleosome, E3 ligase, transcription; NMR {Homo
sapiens} PDB: 2ke1_A 2kft_A
Length = 66
Score = 33.2 bits (76), Expect = 0.005
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 15 ICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNSSSN 53
ICCD C FH C+ E + + C +C ++
Sbjct: 21 ICCDGCPRAFHLACLSPPLREIPS-GTWRCSSCLQATVQ 58
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast,
protein binding; NMR {Saccharomyces cerevisiae} PDB:
2jmj_A*
Length = 90
Score = 33.6 bits (76), Expect = 0.007
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Query: 15 ICCDT---CQDWFHGRCVGILQSEADNIDEYICPNC 47
+ CD +WFH CVG+ + ++ C
Sbjct: 40 VACDNPACPFEWFHYGCVGL---KQAPKGKWYCSKD 72
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain,
winged helix domain, binding, transcription; 2.10A
{Homo sapiens} PDB: 3s32_A
Length = 177
Score = 34.4 bits (78), Expect = 0.008
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 15 ICCDTCQDWFHGRCVGILQSEADNID---EYICPNCNNS 50
+ C C WF GI S + C C++S
Sbjct: 21 LQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHS 59
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.010
Identities = 18/146 (12%), Positives = 44/146 (30%), Gaps = 43/146 (29%)
Query: 64 DFE------SLRKLMKQIQAHKSAWPFMEPVDPHEAPDYY----------NVVKEPMDLK 107
DFE + ++ + F++ D + D +++ +
Sbjct: 8 DFETGEHQYQYKDILSVFED-----AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 108 TIEL---RIAQQRYKKLSEFIGD---------MTKIFDNCR-------YYNPRESPFFKH 148
+ ++ + + +F+ + M+ I R Y + +
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 149 AHQLEMFFV---QKVKILREKLVELK 171
+ V Q LR+ L+EL+
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELR 148
Score = 28.7 bits (63), Expect = 1.2
Identities = 33/203 (16%), Positives = 63/203 (31%), Gaps = 66/203 (32%)
Query: 22 DWFHGRCVGILQSEADNIDEYICPNCNNSSSNLANMKNLTPRDFESLRKLMKQIQAHKSA 81
+ F+ C +L + + +++ S + LTP E L+K
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD--EVKSLLLK-------- 309
Query: 82 WPFMEPVD-PHEA----P-----------------DYY-NVVKEPMDLKTIELRIA---- 114
+ P D P E P D + +V + + IE +
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT-TIIESSLNVLEP 368
Query: 115 ---QQRYKKLSEF-----I---------GDMTK-----IFDNCRYY-----NPRESPFFK 147
++ + +LS F I D+ K + + Y P+ES
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 148 HAHQLEMFF-VQKVKILREKLVE 169
+ LE+ ++ L +V+
Sbjct: 429 PSIYLELKVKLENEYALHRSIVD 451
Score = 28.3 bits (62), Expect = 1.6
Identities = 20/124 (16%), Positives = 32/124 (25%), Gaps = 41/124 (33%)
Query: 37 DNIDEYIC-------PNCNNSSSNLANMKNLTPRDFESLRKLMKQIQAHKSAWPFMEPVD 89
+D+Y N + L F R L ++I+ +AW +
Sbjct: 467 PYLDQYFYSHIGHHLKNIEH-----PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI- 520
Query: 90 PHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDNCRYYNPRESPFFKHA 149
N + LK YK I DN Y +
Sbjct: 521 -------LNTL---QQLKF---------YKPY---------ICDNDPKYERLVNAILDFL 552
Query: 150 HQLE 153
++E
Sbjct: 553 PKIE 556
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural
protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Length = 142
Score = 32.9 bits (74), Expect = 0.019
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 15 ICCDTCQDWFHGRCV------GILQSEADNIDEYICPNCNNSSSNLANMKNLTPRDFESL 68
ICCD C + F +C+ L + D +++ C C+ L ++ FE+L
Sbjct: 76 ICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEP--LLDLVTACNSVFENL 133
Query: 69 RKLMKQ 74
+L++Q
Sbjct: 134 EQLLQQ 139
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding
protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A*
1mm3_A
Length = 61
Score = 31.2 bits (71), Expect = 0.021
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 15 ICCDTCQDWFHGRCVGILQSEADNIDEYICPNC 47
+CCDTC +H C+ E N E++CP C
Sbjct: 22 LCCDTCPSSYHIHCLNPPLPEIPN-GEWLCPRC 53
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 56
Score = 31.2 bits (71), Expect = 0.023
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 15 ICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49
+ CDTC +H C+ +ICP C +
Sbjct: 22 LMCDTCSRVYHLDCLDPPLKTIPK-GMWICPRCQD 55
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B,
MI2-beta, PHD, protein binding, peptide binding metal
binding protein; NMR {Homo sapiens}
Length = 61
Score = 31.2 bits (71), Expect = 0.027
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 15 ICCDTCQDWFHGRCVGILQSEADNIDEYICPNC 47
I CDTC +H C+ +A ++ CP+C
Sbjct: 24 ILCDTCPRAYHMVCLDPDMEKAPE-GKWSCPHC 55
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine
trimethylation, protein, histone-binding protein,
transcription-structural complex; HET: M3L; 0.93A {Homo
sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Length = 129
Score = 30.9 bits (69), Expect = 0.11
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 15 ICCDTCQDWFHGRCV------GILQSEADNIDEYICPNCNNS 50
ICCD C + F +C+ L + D +++ C C+
Sbjct: 70 ICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD
domain, histone-lysine N-methyltransferase, H3 lysine-4
specific MLL3; NMR {Homo sapiens}
Length = 111
Score = 29.6 bits (66), Expect = 0.20
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 5/42 (11%)
Query: 15 ICCDTCQDWFHGRCVGILQSEADN-----IDEYICPNCNNSS 51
C TC +HG C+ I + + +C NC S
Sbjct: 23 FFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSG 64
Score = 25.7 bits (56), Expect = 4.7
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 10 EPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNC 47
E + CDTC +H C+ + + + C NC
Sbjct: 65 EDSKMLVCDTCDKGYHTFCLQPVMKSVPT-NGWKCKNC 101
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules,
epigenetic regulation, trimethylaion of lysine residue,
ligase-DNA binding protein; HET: M3L; 2.90A {Homo
sapiens}
Length = 226
Score = 30.5 bits (68), Expect = 0.20
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 15 ICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNSS 51
+ CD C FH C+ S + DE+ CP C N +
Sbjct: 190 LMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRNDA 226
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module,
epigenetic regulation, LI binding protein complex;
1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A
2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Length = 70
Score = 29.0 bits (65), Expect = 0.20
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 15 ICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNSS 51
+ CD C FH C+ S + DE+ CP C N +
Sbjct: 34 LMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRNDA 70
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone,
methylation, UHRF1, PHD, ligase-NUCL protein complex;
1.80A {Homo sapiens}
Length = 77
Score = 28.7 bits (64), Expect = 0.28
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 15 ICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49
+ CD C FH C+ S + DE+ CP C N
Sbjct: 42 LMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC
complex, transcription; 1.43A {Homo sapiens}
Length = 60
Score = 28.2 bits (63), Expect = 0.34
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 15 ICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49
+ CDTC +H C+ +ICP C +
Sbjct: 18 LMCDTCSRVYHLDCLDPPLKTIPK-GMWICPRCQD 51
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain,
-structure, transcription; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 88
Score = 28.4 bits (63), Expect = 0.37
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 15 ICCDTCQDWFHGRCVGILQSEADNIDEYICPNC 47
+ C+ C+ FH C + +E+ C C
Sbjct: 38 VMCNQCEFCFHLDCHLPALQDVPG-EEWSCSLC 69
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.56
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 21/47 (44%)
Query: 66 ESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEP-MDLK-TIE 110
++L+KL ++ + A D P + +K T+E
Sbjct: 20 QALKKLQASLKLY--------------ADD-----SAPALAIKATME 47
Score = 27.2 bits (59), Expect = 1.9
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 10/30 (33%)
Query: 115 QQRYKKLSEFIGDMTKIFDNCRYYNPRESP 144
+Q KKL + + Y +P
Sbjct: 19 KQALKKLQ----------ASLKLYADDSAP 38
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 29.0 bits (66), Expect = 0.79
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 10/40 (25%)
Query: 103 PMDLKTIELRIAQQRYKKLSEFIGDMT------KIFDN-C 135
P+D TI+LR A Q L E G+ +IF C
Sbjct: 423 PLDFWTIDLRGAIQ---ALGEITGEEVTESVLDRIFSRFC 459
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 29.1 bits (66), Expect = 0.82
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 10/40 (25%)
Query: 103 PMDLKTIELRIAQQRYKKLSEFIGDMT------KIFDN-C 135
P+D+ +I+L A L E G IF N C
Sbjct: 443 PVDMASIDLERALN---LLDEVTGRSFREDLLDTIFSNFC 479
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.5 bits (63), Expect = 0.85
Identities = 4/23 (17%), Positives = 7/23 (30%), Gaps = 1/23 (4%)
Query: 33 QSEADNIDEY-ICPNCNNSSSNL 54
N++ CP C +
Sbjct: 12 GRRGPNLNIVLTCPECKVYPPKI 34
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 29.0 bits (66), Expect = 0.86
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 10/40 (25%)
Query: 103 PMDLKTIELRIAQQRYKKLSEFIGDMT------KIFDN-C 135
+L ELR A + + G + IFD C
Sbjct: 437 ETELIAFELRAALD---YVGQITGKVVNEEVLNTIFDKFC 473
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis,
apoptosis, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 134
Score = 28.1 bits (62), Expect = 0.92
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 9/72 (12%)
Query: 23 WFHGRCVGILQSEADNIDEYICPNCNNSSSNLANMKNLTPRDFESLRKLMKQIQAHKSAW 82
W+H C + E EY S+S L L D E+L+K + ++
Sbjct: 62 WYHPGCFVKNREELGFRPEY-------SASQLKGFSLLATEDKEALKKQLPGVK--SEGK 112
Query: 83 PFMEPVDPHEAP 94
+ VD +
Sbjct: 113 RKGDEVDGVDEV 124
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell
death, structural genomics; NMR {Arabidopsis thaliana}
Length = 114
Score = 27.6 bits (61), Expect = 0.98
Identities = 8/66 (12%), Positives = 23/66 (34%), Gaps = 12/66 (18%)
Query: 18 DTCQDWFHGRCVGILQSEADNIDEYICPNCNNSSSNLANMKNLTPRDFESLRKLMKQIQA 77
W H C+ + ++D+ + +++L D + +RK ++
Sbjct: 48 GIMPMWNHASCILKKTKQIKSVDD------------VEGIESLRWEDQQKIRKYVESGAG 95
Query: 78 HKSAWP 83
++
Sbjct: 96 SNTSTS 101
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from
bromodomain-containing protein...; PHD finger, histone
CODE, transcription; NMR {Homo sapiens}
Length = 88
Score = 26.9 bits (59), Expect = 1.5
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 15 ICCDTCQDWFHGRCVGILQSEADNIDE--YICPNCNNSSSN 53
+ CD C H C G+ I E ++C +C S +
Sbjct: 43 LFCDMCNLAVHQECYGV-----PYIPEGQWLCRHCLQSRAR 78
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin
regulator, metal-binding, finger, signaling protein;
NMR {Homo sapiens}
Length = 71
Score = 25.6 bits (56), Expect = 2.8
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 7/43 (16%)
Query: 15 ICCDTCQDWFHGRCVGILQSEADNIDE--YICPNCNNSSSNLA 55
+ CD C H C G+ I E ++C +C S + A
Sbjct: 34 LFCDMCNLAVHQECYGV-----PYIPEGQWLCRHCLQSRARPA 71
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1,
ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose)
synthetase 1; NMR {Homo sapiens}
Length = 106
Score = 26.0 bits (57), Expect = 3.3
Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 11/59 (18%)
Query: 23 WFHGRCVGILQSEADNIDEYICPNCNNSSSNLANMKNLTPRDFESLRKLMKQIQAHKSA 81
W+H C + + D + L D + ++K + + S+
Sbjct: 58 WYHFSCFWKVGHSIRHPDVEV-----------DGFSELRWDDQQKVKKTAEAGGSGPSS 105
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 77
Score = 25.5 bits (56), Expect = 4.1
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 15 ICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNN 49
+ CD C +H C+ + + + CP+C
Sbjct: 42 LLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp
loader, sliding clamp, primer-TEM DNA, DNA binding
protein-DNA complex; HET: DNA ADP 08T; 3.20A
{Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Length = 324
Score = 26.5 bits (59), Expect = 4.1
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 27 RCVGILQSEA--DNIDEYICPNCNNSSSNLANM-KNLTPRDFESLRKLMKQI 75
+ +G L S + +D I N + ++ ++L +D + LR L +
Sbjct: 211 KTIGELDSYSSKGVLDAGILSLVTNDRGAIDDVLESLKNKDVKQLRALAPKY 262
>1f9y_A HPPK, protein (6-hydroxymethyl-7,8-dihydropterin
pyrophosphokinase); pyrophosphoryl transfer, catalytic
mechanism, folate, ternary complex; HET: APC HHR; 0.89A
{Escherichia coli} SCOP: d.58.30.1 PDB: 1eq0_A 1dy3_A*
1ex8_A* 1eqm_A* 1hka_A 1q0n_A* 1rao_A* 1rb0_A* 2f63_A
2f65_A 3h4a_A* 3ip0_A* 3ud5_A* 3ude_A* 3udv_A* 3kue_A
3hd2_A* 1f9h_A* 1g4c_A 1kbr_A ...
Length = 158
Score = 26.3 bits (59), Expect = 4.6
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 10/37 (27%)
Query: 86 EPVDPHEAPDYYN-VVK-----EPMDL----KTIELR 112
P+ P + PDY N V P +L + IEL+
Sbjct: 43 PPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQ 79
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 5.1
Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 24/88 (27%)
Query: 84 FM----EPVDPHEAPDYYNVVKEPMDLKTIELRIAQQR------YKKLSEFIGDMTKIFD 133
F+ V+P + + V+ + L E + K L E + K +
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLN--LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 134 NCR-YY-----------NPRESPFFKHA 149
+ Y S F+
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAV 149
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein;
structural genomics, oxidoreductase, amino-acid
biosynthesis; 2.10A {Clostridium acetobutylicum}
Length = 282
Score = 26.3 bits (59), Expect = 5.4
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 8/29 (27%)
Query: 138 YNPRESPFFKHAHQ--------LEMFFVQ 158
YNP E+ F K+A + L M Q
Sbjct: 215 YNPVETLFLKYARESGVKAVNGLYMLVSQ 243
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT
facility, SSPF, nuclear protein; 1.79A {Lassa virus
josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Length = 577
Score = 26.5 bits (58), Expect = 5.5
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 9/72 (12%)
Query: 45 PNCNNSSSNLANMKNLTPRDFESLRKLMKQIQAHKSAWPFME--PVDPHEA----PD--- 95
N + S + LT +L+ M Q+ + W +E P DP E P
Sbjct: 358 NNSSKSLQSAGFTAGLTYSQLMTLKDAMLQLDPNAKTWMDIEGRPEDPVEIALYQPSSGC 417
Query: 96 YYNVVKEPMDLK 107
Y + +EP DLK
Sbjct: 418 YIHFFREPTDLK 429
>1cbk_A Protein (7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase);
transferase; HET: ROI; 2.02A {Haemophilus influenzae}
SCOP: d.58.30.1
Length = 160
Score = 25.9 bits (58), Expect = 5.5
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 10/37 (27%)
Query: 86 EPVDPHEAPDYYN-VVK-----EPMDL----KTIELR 112
+P+ P + PDY N V K P+ L + IE
Sbjct: 44 KPLGPQDQPDYVNAVAKIETELSPLKLLDELQRIENE 80
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel,
tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces
cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A*
1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A*
1aw5_A
Length = 342
Score = 26.4 bits (59), Expect = 5.7
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 11 PKFYICCDTCQDWF--HGRCVGILQSEAD 37
P+ YI CD C + HG C G+L +
Sbjct: 124 PELYIICDVCLCEYTSHGHC-GVLYDDGT 151
>2qx0_A 7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase; 3-layered
alpha-BATA-alpha fold, homodimer, ternary complex,
transferase; HET: APC PH2; 1.80A {Yersinia pestis}
Length = 159
Score = 25.9 bits (58), Expect = 6.2
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 10/37 (27%)
Query: 86 EPVDPHEAPDYYN-VVK-----EPMDL----KTIELR 112
+P+ P + PD+ N VV P L + IE
Sbjct: 44 KPLGPQDQPDFLNAVVALDTSLPPEQLLDHTQAIERN 80
>4av1_A Poly [ADP-ribose] polymerase 1; transferase, PARP1, DNA-binding
domain, DBD, DNA repair, CAN poly- ADP(ribosyl)ation;
3.10A {Homo sapiens} PDB: 2l30_A
Length = 223
Score = 26.0 bits (56), Expect = 6.4
Identities = 10/117 (8%), Positives = 30/117 (25%), Gaps = 20/117 (17%)
Query: 23 WFHGRCVGILQSEADNIDEYICPNCNNSSSNLANMKNLTPRDFESLRKLMKQIQAHKSAW 82
W+H C + + D + L D + ++K +
Sbjct: 72 WYHFSCFWKVGHSIRHPDVEV-----------DGFSELRWDDQQKVKKTAEAGGVTGKGQ 120
Query: 83 PFMEPVDPHEAPDYYNVVKEPMDLKTI---------ELRIAQQRYKKLSEFIGDMTK 130
+ D+ + ++R++++ +G + +
Sbjct: 121 DGIGSKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDR 177
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 51
Score = 24.2 bits (53), Expect = 6.8
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 15 ICCDTCQDWFHGRCVGILQSEADNI--DEYICPNCNNSS 51
I CD C FH C L+ + E+ CP C ++
Sbjct: 16 ILCDECNKAFHLFC---LRPALYEVPDGEWQCPACQPAT 51
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 26.0 bits (57), Expect = 6.8
Identities = 8/52 (15%), Positives = 13/52 (25%), Gaps = 2/52 (3%)
Query: 20 CQDWFHGRCVGILQSEADNIDEYICPNCNNSSSNLANMKN--LTPRDFESLR 69
G I+ + N ++ L M + L P L
Sbjct: 219 TITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIVDLT 270
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: g.50.1.1
Length = 134
Score = 25.7 bits (55), Expect = 6.9
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 17 CDTCQDWFHGRCVGILQSEADNIDEYICPNC 47
C+ C+ +C G+ S ++C C
Sbjct: 75 CEDCKKNVCTKC-GVETSNNRPHPVWLCKIC 104
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 92
Score = 24.9 bits (54), Expect = 7.8
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 15 ICCDTCQDWFHGRCVG-ILQSEADNIDEYICPNC 47
+ CD C D +H C+ L + CP C
Sbjct: 32 LFCDGCDDNYHIFCLLPPLPEIPR--GIWRCPKC 63
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.44.1.1
Length = 114
Score = 25.2 bits (54), Expect = 8.3
Identities = 8/39 (20%), Positives = 13/39 (33%)
Query: 9 IEPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNC 47
+ P C FH C+ + + CP+C
Sbjct: 50 LGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSC 88
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase,
tetrapyrrole biosynthesis, reactio intermediate, lyase;
HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB:
1e51_A* 2z0i_A 2z1b_A
Length = 330
Score = 25.6 bits (57), Expect = 9.4
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 11 PKFYICCDTCQDWF--HGRCVGIL 32
P + CD C + HG C G+L
Sbjct: 113 PNLLVACDVCLCPYTSHGHC-GLL 135
>4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B
2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B
Length = 1131
Score = 26.0 bits (57), Expect = 9.7
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 12 KFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNSSS 52
+ D + +C G + N ++Y+CP + S+
Sbjct: 1051 RLLDNSDRTTIYVCDQC-GYIGWYDKNKNKYVCPIHGDKSN 1090
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.435
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,684,624
Number of extensions: 148597
Number of successful extensions: 930
Number of sequences better than 10.0: 1
Number of HSP's gapped: 887
Number of HSP's successfully gapped: 136
Length of query: 171
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 84
Effective length of database: 4,272,666
Effective search space: 358903944
Effective search space used: 358903944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (24.8 bits)