RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5115
(171 letters)
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module
{Human (Homo sapiens) [TaxId: 9606]}
Length = 139
Score = 109 bits (274), Expect = 5e-32
Identities = 25/103 (24%), Positives = 47/103 (45%)
Query: 68 LRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGD 127
L ++ ++ + +PF PV+ DYY ++ PMDL+T+ + ++ Y EF
Sbjct: 31 LESIINDMRDLPNTYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREH 90
Query: 128 MTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVKILREKLVEL 170
+ I N YN + + + + +K+K +KL L
Sbjct: 91 LELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARL 133
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module
{Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 104 bits (261), Expect = 3e-30
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 68 LRKLMKQ-IQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIG 126
L ++ Q + A +WPF PV+ PDYY V+ PMDL+TI I++ +Y+ F+
Sbjct: 14 LDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLD 73
Query: 127 DMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVKILREKLVELK 171
D+ I N YN ES + K A ++ Q + E L +L+
Sbjct: 74 DVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQLE 118
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 111
Score = 103 bits (258), Expect = 7e-30
Identities = 42/102 (41%), Positives = 72/102 (70%)
Query: 64 DFESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSE 123
+++ ++ ++Q H +AWPF++PV+ E PDYY+ +KEPMDL T+E+++ +Y+K+ +
Sbjct: 4 HDAAIQNILTELQNHAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMED 63
Query: 124 FIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVKILRE 165
FI D +F+NCR YN + ++K+A++LE FF KVK + E
Sbjct: 64 FIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKEIPE 105
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId:
9606]}
Length = 102
Score = 103 bits (257), Expect = 8e-30
Identities = 44/97 (45%), Positives = 64/97 (65%)
Query: 65 FESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEF 124
+ +L+ L+ QI++H SAWPFMEPV EAPDYY V++ P+DLKT+ R+ + Y F
Sbjct: 4 YTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKLF 63
Query: 125 IGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVK 161
+ D+ ++ NCR YNP +S + + A LE FF K+K
Sbjct: 64 VADLQRVIANCREYNPPDSEYCRCASALEKFFYFKLK 100
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase
bromodomain {Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 101 bits (252), Expect = 6e-29
Identities = 45/110 (40%), Positives = 73/110 (66%)
Query: 52 SNLANMKNLTPRDFESLRKLMKQIQAHKSAWPFMEPVDPHEAPDYYNVVKEPMDLKTIEL 111
S+++ + + +L+ +++Q+++H+SAWPFMEPV EAP YY V++ PMDLKT+
Sbjct: 2 SHMSKEPRDPDQLYSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSE 61
Query: 112 RIAQQRYKKLSEFIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVK 161
R+ + Y F+ D+ ++F NC+ YNP ES ++K A+ LE FF K+K
Sbjct: 62 RLKNRYYVSKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFFSKIK 111
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 94.3 bits (234), Expect = 3e-26
Identities = 30/105 (28%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Query: 66 ESLRKLMKQIQAH-KSAWPFMEPVDP--HEAPDYYNVVKEPMDLKTIELRIAQQRYKKLS 122
++L ++ + + PF +PVDP PDY+++VK PMDL TI+ ++ +Y++
Sbjct: 9 QALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPW 68
Query: 123 EFIGDMTKIFDNCRYYNPRESPFFKHAHQLEMFFVQKVKILREKL 167
+++ D+ +F+N YN + S +K +L F Q++ + + L
Sbjct: 69 QYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQSL 113
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 64
Score = 58.5 bits (141), Expect = 7e-13
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 10 EPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNSSS 52
+F+ICCD C+ WFHG+CV I + A++I +Y CP+C+N S
Sbjct: 18 ADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSG 60
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 79
Score = 57.4 bits (138), Expect = 3e-12
Identities = 24/52 (46%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 12 KFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNSSSNLANMKNLTPR 63
F I C CQDWFHG CVGI + A +ID Y CP+C + MKN
Sbjct: 25 HFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP-SIMKNWHSG 75
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 76
Score = 51.6 bits (123), Expect = 3e-10
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 4/42 (9%)
Query: 10 EPKFYICCDTCQDWFHGRCVGILQSEADNI----DEYICPNC 47
+F ICCD C++WFHG CVGI ++ + ++YICPNC
Sbjct: 26 NNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNC 67
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 72
Score = 47.3 bits (112), Expect = 1e-08
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 10 EPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNC 47
+ + + CD C W H RC+GI ++A +++C C
Sbjct: 27 DGERMLACDGCGVWHHTRCIGINNADALP-SKFLCFRC 63
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 44.4 bits (104), Expect = 2e-07
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 4/46 (8%)
Query: 10 EPKFYICCDTCQDWFHGRCVGI----LQSEADNIDEYICPNCNNSS 51
+ C W H CV + + + + C C +S
Sbjct: 28 DSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 61
Score = 39.9 bits (93), Expect = 6e-06
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 15 ICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNSS 51
+CCDTC +H C+ E N E++CP C +
Sbjct: 22 LCCDTCPSSYHIHCLNPPLPEIPN-GEWLCPRCTCPA 57
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription
factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 37.3 bits (86), Expect = 4e-05
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 10 EPKFYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNSS 51
E I CD C FH C+ E + E+ CP C ++
Sbjct: 11 EDDKLILCDECNKAFHLFCLRPALYEVPD-GEWQCPACQPAT 51
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 35.4 bits (81), Expect = 4e-04
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 15 ICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNSSS 52
+ C+ C+ FH C + +E+ C C+
Sbjct: 20 VMCNQCEFCFHLDCHLPALQDVPG-EEWSCSLCHVLPD 56
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 35.2 bits (80), Expect = 6e-04
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 15 ICCDTCQDWFHGRCVGILQSEADNID---EYICPNCNNSSSN 53
+ C C + +H C ++ + D + C C
Sbjct: 34 VECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4
{Homo sapiens [TaxId: 9606]}
Length = 51
Score = 33.4 bits (76), Expect = 0.001
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 13 FYICCDTCQDWFHGRCVGILQSEADNIDEYICPNC 47
D +WFH CVG+ ++ CP C
Sbjct: 17 GCDNPDCSIEWFHFACVGL---TTKPRGKWFCPRC 48
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 71
Score = 31.1 bits (70), Expect = 0.012
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 13 FYICCDTCQ-DWFHGRCVGILQSEADNIDEYICPNC 47
+ C +WFH CV + ++ CP C
Sbjct: 30 IGCDNEQCPIEWFHFSCVSLTYKPK---GKWYCPKC 62
>d2p8ta2 d.74.4.2 (A:83-199) Hypothetical protein PH0730 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 117
Score = 28.7 bits (64), Expect = 0.16
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 84 FMEP--VDPHEAPDYYNVVKEPMDLKTIELR 112
F EP V P VVK P + K+IELR
Sbjct: 2 FSEPIGVSVDGYPGIAIVVKNPPEFKSIELR 32
>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 26.7 bits (59), Expect = 0.34
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 35 EADNIDEYICPNCNNSSSNLANMKNLTPRD 64
++ N + CP C+++ ++L + P
Sbjct: 8 DSTNRASFKCPVCSSTFTDLEANQLFDPMT 37
>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1207
Score = 27.6 bits (60), Expect = 0.99
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 13 FYICCDTCQDWFHGRCVGILQSEADNIDEYICPNCNNSSSNLANMKNLTPRDFESLRKLM 72
D + G C + N +++ C C+N ++ + P + + L
Sbjct: 1134 LMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDN-KIDIYQIH--IP---YAAKLLF 1187
Query: 73 KQIQA 77
+++ A
Sbjct: 1188 QELMA 1192
>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP
2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 378
Score = 26.0 bits (57), Expect = 2.4
Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 31/117 (26%)
Query: 27 RCVGILQSEADNIDEYICPNCNNSSSNLANMKNLTPRDFESLRKLMKQIQAHKSAWPFME 86
+ + I Q ++++E+ + + N NL + +L+ + K ++A
Sbjct: 263 QLLEIAQVPDEHVNEF----KSIEKFKIFNTNNL----WVNLKAIKKLVEADALKMEI-- 312
Query: 87 PVDPHEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGDMTKIFDNCRYYN-PRE 142
P KE +K + +L G + FDN N PR
Sbjct: 313 ----IPNP------KEVDGVKVL----------QLETAAGAAIRFFDNAIGVNVPRS 349
>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 58
Score = 23.6 bits (51), Expect = 4.8
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 34 SEADNIDEYICPNCNNSS 51
S D + CPN ++
Sbjct: 4 SRLDALPRVTCPNHPDAI 21
>d1xnea_ b.122.1.6 (A:) Hypothetical protein PF0470 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 113
Score = 24.3 bits (53), Expect = 5.9
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 12/60 (20%)
Query: 91 HEAPDYYNVVKEPMDLKTIELRIAQQRYKKLSEFIGD--------MTKIFDNCRYYNPRE 142
+ +Y +VK K IE+R+A + K + GD ++ + +Y R+
Sbjct: 7 YLKDEYLEMVKS--GKKRIEVRVAYPQLKDIKR--GDKIIFNDLIPAEVVEVKKYETFRQ 62
>g1o7d.2 b.30.5.6 (C:488-585,D:603-875,E:885-1007) Lysosomal
alpha-mannosidase {Cow (Bos taurus) [TaxId: 9913]}
Length = 490
Score = 24.7 bits (53), Expect = 6.8
Identities = 15/105 (14%), Positives = 35/105 (33%), Gaps = 6/105 (5%)
Query: 18 DTCQDWFHGRCVGILQSEADNIDEYICPNCNNSSSNLANM-KNLTPRDFE--SLRKLMKQ 74
T W + L+ + ++ + + +L N+ T + +L
Sbjct: 386 LTLARWGPETLLLRLEHQFAVGEDSGRNLSSPVTLDLTNLFSAFTITNLRETTLAANQLL 445
Query: 75 IQAHKSAWPFMEPVDPHEAPDY---YNVVKEPMDLKTIELRIAQQ 116
A + W PH +P + +PM+++T + +
Sbjct: 446 AYASRLQWTTDTGPTPHPSPSRPVSATITLQPMEIRTFLASVQWE 490
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.138 0.435
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 693,948
Number of extensions: 32093
Number of successful extensions: 220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 35
Length of query: 171
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 92
Effective length of database: 1,322,926
Effective search space: 121709192
Effective search space used: 121709192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.6 bits)