Query psy5116
Match_columns 422
No_of_seqs 259 out of 857
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 17:38:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5116.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5116hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1473|consensus 100.0 1.2E-77 2.5E-82 649.8 22.9 411 1-422 1-433 (1414)
2 PF02791 DDT: DDT domain; Int 99.6 1.5E-16 3.3E-21 123.5 5.7 60 182-241 1-60 (61)
3 smart00571 DDT domain in diffe 99.6 2E-16 4.4E-21 123.7 5.7 60 182-241 1-62 (63)
4 KOG4299|consensus 98.8 1.6E-09 3.4E-14 115.7 1.3 50 333-382 253-307 (613)
5 PF00628 PHD: PHD-finger; Int 98.5 3.9E-08 8.4E-13 72.8 0.6 45 335-379 1-50 (51)
6 KOG0825|consensus 98.4 9.6E-08 2.1E-12 103.9 1.2 48 334-381 216-267 (1134)
7 KOG1244|consensus 98.3 2.3E-07 4.9E-12 91.0 1.9 48 333-380 281-331 (336)
8 cd04718 BAH_plant_2 BAH, or Br 98.3 3.3E-07 7.1E-12 83.2 2.6 30 354-383 1-30 (148)
9 smart00249 PHD PHD zinc finger 98.3 5.7E-07 1.2E-11 63.8 3.2 43 335-377 1-47 (47)
10 KOG0383|consensus 98.3 2.8E-07 6.1E-12 101.0 1.4 53 330-382 44-96 (696)
11 KOG0955|consensus 98.0 2.9E-06 6.2E-11 96.6 3.5 85 328-422 214-303 (1051)
12 KOG0954|consensus 98.0 4.1E-06 8.9E-11 91.2 3.1 80 332-422 270-354 (893)
13 KOG1973|consensus 97.9 5.2E-06 1.1E-10 82.4 1.7 45 335-381 221-269 (274)
14 KOG0956|consensus 97.8 1.2E-05 2.5E-10 87.2 2.2 79 335-422 7-92 (900)
15 KOG1512|consensus 97.6 3.1E-05 6.6E-10 76.8 1.7 47 333-381 314-364 (381)
16 COG5034 TNG2 Chromatin remodel 97.4 7.3E-05 1.6E-09 73.1 2.1 45 333-380 221-270 (271)
17 KOG0957|consensus 97.2 0.00013 2.8E-09 76.9 1.2 46 334-379 545-597 (707)
18 KOG4323|consensus 97.2 0.00016 3.5E-09 76.2 1.8 48 334-381 169-225 (464)
19 KOG1245|consensus 97.0 0.00013 2.8E-09 86.2 -0.9 49 333-381 1108-1159(1404)
20 COG5141 PHD zinc finger-contai 97.0 0.00027 5.8E-09 74.6 1.4 64 331-397 191-259 (669)
21 KOG4443|consensus 96.9 0.00037 8E-09 75.7 2.0 46 333-378 68-116 (694)
22 KOG1473|consensus 96.9 0.00015 3.2E-09 82.3 -1.4 79 332-416 427-509 (1414)
23 PF13831 PHD_2: PHD-finger; PD 96.0 0.0015 3.4E-08 45.9 -0.3 34 343-378 2-36 (36)
24 PF15613 WHIM2: WSTF, HB1, Itc 95.4 0.0089 1.9E-07 42.7 1.6 17 400-416 1-17 (38)
25 KOG4299|consensus 94.2 0.024 5.3E-07 61.7 2.1 47 333-379 47-94 (613)
26 KOG0957|consensus 92.9 0.074 1.6E-06 56.8 3.0 67 335-403 121-200 (707)
27 PF02178 AT_hook: AT hook moti 91.8 0.064 1.4E-06 29.9 0.5 10 6-15 2-11 (13)
28 KOG1512|consensus 91.0 0.084 1.8E-06 53.0 0.7 76 331-417 256-343 (381)
29 KOG4628|consensus 90.2 0.28 6E-06 50.7 3.7 49 334-385 230-281 (348)
30 PF15612 WHIM1: WSTF, HB1, Itc 89.9 0.14 3E-06 37.8 0.9 39 286-324 5-43 (50)
31 PF14446 Prok-RING_1: Prokaryo 89.1 0.18 3.9E-06 38.7 1.0 29 334-362 6-38 (54)
32 smart00384 AT_hook DNA binding 88.7 0.24 5.2E-06 32.6 1.2 14 5-18 1-14 (26)
33 PF15446 zf-PHD-like: PHD/FYVE 88.3 0.21 4.7E-06 46.6 1.2 45 335-379 1-59 (175)
34 KOG1246|consensus 85.1 0.65 1.4E-05 53.5 3.0 47 334-380 156-204 (904)
35 KOG1081|consensus 84.7 0.63 1.4E-05 49.9 2.6 50 329-381 85-134 (463)
36 KOG3612|consensus 83.1 1.1 2.4E-05 48.6 3.4 48 333-381 60-109 (588)
37 KOG0383|consensus 80.5 0.33 7.3E-06 54.2 -1.5 53 329-381 502-555 (696)
38 KOG4443|consensus 79.8 0.52 1.1E-05 52.0 -0.3 51 329-379 14-70 (694)
39 PF12861 zf-Apc11: Anaphase-pr 79.1 0.57 1.2E-05 39.2 -0.2 44 336-380 35-80 (85)
40 PF13639 zf-RING_2: Ring finge 67.7 0.35 7.7E-06 34.5 -3.6 40 334-378 1-44 (44)
41 PF13901 DUF4206: Domain of un 65.5 4.4 9.5E-05 38.7 2.3 38 334-380 153-198 (202)
42 PF00301 Rubredoxin: Rubredoxi 63.5 3.1 6.6E-05 31.1 0.6 34 347-381 3-44 (47)
43 PF13832 zf-HC5HC2H_2: PHD-zin 63.2 3.8 8.3E-05 34.7 1.3 29 333-361 55-86 (110)
44 cd00730 rubredoxin Rubredoxin; 61.9 5.2 0.00011 30.2 1.6 34 347-381 3-44 (50)
45 KOG1244|consensus 61.2 4.3 9.4E-05 40.9 1.4 65 342-417 243-310 (336)
46 PF11793 FANCL_C: FANCL C-term 60.3 3.8 8.3E-05 32.7 0.7 47 334-380 3-64 (70)
47 PF13771 zf-HC5HC2H: PHD-like 58.2 5.1 0.00011 32.5 1.1 30 332-361 35-67 (90)
48 PF10367 Vps39_2: Vacuolar sor 55.2 6.8 0.00015 32.4 1.4 31 331-361 76-108 (109)
49 COG1773 Rubredoxin [Energy pro 53.7 9 0.00019 29.7 1.7 17 364-381 30-46 (55)
50 PRK03564 formate dehydrogenase 49.1 59 0.0013 33.4 7.3 27 332-358 186-225 (309)
51 cd00162 RING RING-finger (Real 47.4 3.7 7.9E-05 27.8 -1.2 41 336-379 2-43 (45)
52 PHA02929 N1R/p28-like protein; 41.7 9 0.0002 37.8 0.1 45 332-380 173-225 (238)
53 PF00130 C1_1: Phorbol esters/ 37.5 22 0.00047 26.0 1.6 28 334-361 12-44 (53)
54 smart00184 RING Ring finger. E 34.8 5.2 0.00011 26.0 -2.0 27 336-362 1-27 (39)
55 PRK14559 putative protein seri 34.6 32 0.00069 38.7 3.0 45 335-380 3-50 (645)
56 KOG1829|consensus 34.5 9.7 0.00021 42.1 -1.0 30 345-381 531-560 (580)
57 PLN02436 cellulose synthase A 33.3 29 0.00063 41.1 2.5 47 332-381 35-88 (1094)
58 COG1107 Archaea-specific RecJ- 32.8 24 0.00052 39.2 1.6 41 330-381 65-105 (715)
59 TIGR01562 FdhE formate dehydro 32.5 93 0.002 31.9 5.7 26 333-358 184-223 (305)
60 PF00641 zf-RanBP: Zn-finger i 31.5 21 0.00045 23.5 0.6 23 369-391 2-24 (30)
61 PLN02400 cellulose synthase 31.3 35 0.00076 40.4 2.7 46 332-380 35-87 (1085)
62 KOG2236|consensus 31.3 89 0.0019 33.8 5.4 42 184-229 210-251 (483)
63 PLN02638 cellulose synthase A 30.8 30 0.00065 40.9 2.1 46 332-380 16-68 (1079)
64 PF09292 Neil1-DNA_bind: Endon 30.7 29 0.00063 24.9 1.2 12 405-416 20-31 (39)
65 PF12678 zf-rbx1: RING-H2 zinc 30.4 6.5 0.00014 31.5 -2.4 27 348-378 47-73 (73)
66 smart00547 ZnF_RBZ Zinc finger 29.8 27 0.00059 22.0 0.9 20 370-389 1-20 (26)
67 PHA02664 hypothetical protein; 29.2 62 0.0014 33.7 3.8 15 87-101 425-439 (534)
68 COG5574 PEX10 RING-finger-cont 29.1 15 0.00032 36.9 -0.7 48 332-381 214-261 (271)
69 PLN02189 cellulose synthase 29.0 37 0.0008 40.1 2.4 48 331-381 32-86 (1040)
70 cd00350 rubredoxin_like Rubred 28.9 43 0.00093 22.8 1.8 12 370-381 16-27 (33)
71 PF03107 C1_2: C1 domain; Int 28.1 49 0.0011 22.0 1.9 26 335-360 2-30 (30)
72 PHA02825 LAP/PHD finger-like p 27.9 15 0.00033 34.3 -0.7 49 331-381 6-58 (162)
73 PF07649 C1_3: C1-like domain; 27.4 26 0.00056 23.2 0.5 26 335-360 2-30 (30)
74 KOG4218|consensus 26.4 28 0.0006 36.4 0.7 51 331-381 13-77 (475)
75 KOG2114|consensus 26.1 24 0.00053 40.6 0.3 40 334-380 841-881 (933)
76 PF08746 zf-RING-like: RING-li 25.6 12 0.00027 27.1 -1.4 40 336-377 1-43 (43)
77 PF10497 zf-4CXXC_R1: Zinc-fin 25.4 22 0.00047 30.7 -0.2 46 334-379 8-69 (105)
78 KOG3970|consensus 25.1 25 0.00055 34.7 0.2 48 332-380 49-103 (299)
79 PLN02915 cellulose synthase A 24.8 47 0.001 39.3 2.2 47 332-381 14-67 (1044)
80 KOG3799|consensus 24.8 22 0.00047 32.5 -0.3 50 331-380 63-116 (169)
81 COG3058 FdhE Uncharacterized p 24.1 1.7E+02 0.0036 30.0 5.6 27 331-357 183-223 (308)
82 cd00029 C1 Protein kinase C co 23.8 43 0.00093 23.7 1.1 28 334-361 12-44 (50)
83 KOG1632|consensus 23.1 41 0.00089 34.9 1.3 39 343-381 73-114 (345)
84 PF10446 DUF2457: Protein of u 22.9 65 0.0014 34.7 2.6 12 169-181 187-198 (458)
85 PF10080 DUF2318: Predicted me 22.8 40 0.00087 29.1 0.9 30 332-361 34-68 (102)
86 PLN03208 E3 ubiquitin-protein 22.8 22 0.00048 34.1 -0.7 49 332-380 17-77 (193)
87 PF02318 FYVE_2: FYVE-type zin 22.7 28 0.00061 30.3 -0.0 47 332-381 53-104 (118)
88 PF05502 Dynactin_p62: Dynacti 22.2 45 0.00097 36.2 1.4 31 344-379 4-34 (483)
89 PLN02195 cellulose synthase A 22.0 57 0.0012 38.4 2.2 48 332-382 5-59 (977)
90 PF05191 ADK_lid: Adenylate ki 22.0 53 0.0011 23.1 1.3 28 346-379 2-29 (36)
91 KOG1493|consensus 21.5 7.1 0.00015 32.3 -3.7 30 350-380 50-79 (84)
92 KOG4718|consensus 21.2 29 0.00063 33.9 -0.3 49 332-381 180-229 (235)
93 TIGR00927 2A1904 K+-dependent 21.2 2E+02 0.0043 34.3 6.2 46 185-236 947-992 (1096)
94 KOG2141|consensus 21.2 97 0.0021 35.4 3.7 64 94-157 221-286 (822)
95 KOG1734|consensus 20.9 45 0.00097 33.8 1.0 49 330-380 221-279 (328)
96 PF04216 FdhE: Protein involve 20.0 57 0.0012 32.6 1.5 38 332-381 171-221 (290)
97 PRK11827 hypothetical protein; 20.0 68 0.0015 25.3 1.6 21 335-355 10-36 (60)
No 1
>KOG1473|consensus
Probab=100.00 E-value=1.2e-77 Score=649.84 Aligned_cols=411 Identities=41% Similarity=0.677 Sum_probs=347.5
Q ss_pred CCcc-CCCCCCCCCCCCCC-CCcccccccccchhhhhhhccCCCCCCCCCCCCCCCC---CC-cccccccc--CCCCCCC
Q psy5116 1 MYGR-IKRRGRPPKTPNTE-RPKFQVHLLKKPQYLQNLEARGLNSPITSRTSSPQGS---ET-SRRSTAKK--GTKRKSN 72 (422)
Q Consensus 1 ~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~--~~~~~~~ 72 (422)
|+|+ +|.||||||.+.++ ... -+.++|||+|+.. +++. .|+.++|.-+++.+ .. ++.|.... |. +...
T Consensus 1 m~g~~arpRGRp~k~p~~e~~nr-~~~~~kkp~~~~e-~~~p-~s~l~~r~~~d~~d~~~~~~k~~s~d~~~~rv-~~e~ 76 (1414)
T KOG1473|consen 1 MEGKVARPRGRPRKRPRSEDGNR-SINRGKKPVEEVE-SAVP-RSLLGKRYLKDGDDKKVFLGKIVSYDTGLYRV-KYED 76 (1414)
T ss_pred CCCCCCCCCCCCCCCCCcccccc-hhhhccCcccccc-ccCc-cccccccccCCccchhhhhcccccccCcceeE-Eeec
Confidence 8999 99999999999955 334 8999999999988 5555 99999999999887 22 22222211 11 1111
Q ss_pred CCCCCCCCCCcc------CccccccccccCCCCCCCCCC--CCcC--CCCCCCCCCCCCCCCCCCCCCcccccccccCCC
Q psy5116 73 PPTRGGRGGNQK------RKQTLETDYHYGSDFEDSTDH--DDDL--GLSESETEPEKDDPLDEMSDSDLSLSSFSTTSG 142 (422)
Q Consensus 73 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 142 (422)
...+..+.++.. .+.+ +..+||++||+|.+++ |+++ ..+++++|+. .-.-+++.+-+|.++|+.+.+
T Consensus 77 ~~~~~~~~s~v~~~~~s~s~~~-eet~~rr~dl~d~~edk~d~~dd~e~~e~~~ed~--~~~N~~~~v~~se~~~n~t~~ 153 (1414)
T KOG1473|consen 77 GDVESLEASTVRPLIISDSGKD-EETRPRRKDLDDQEEDKDDKKDDSEEEEKDDEDP--FMCNEDSSVQESESGLNYTDI 153 (1414)
T ss_pred cccccccccccccccccccccc-ccccccccchhhhhhhhhhcccccccccccccch--hhcCchhhhhhhhcccccCCC
Confidence 111111122221 1234 8899999999995432 1111 1111111111 011235667779999998875
Q ss_pred ccCCCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCChHhHHHHHHHHHHHHhcccccccCCcCHHHHHHHHccCCCc
Q psy5116 143 TNKKFSYISRMSPEPLWLQTERQIQPLELPRSSDDLLIPREYVMQTLSIYEVLRHFKSLIRLSPFRFEDFCAVLNFEEQS 222 (422)
Q Consensus 143 ~~~~~~~~~~~~p~p~~~~~~~~~p~l~lP~ss~d~~ip~e~vg~~L~v~efL~~F~~~L~LsPFtledf~~AL~~~~~~ 222 (422)
. | +++++.|.|-|.+++..+|+|+||.||+|+.||++.|+++|+||+|||+|+.+|+|+||+|||||+||.+.+++
T Consensus 154 ~-~---~~~~d~~~p~~~~e~~~vPpleLP~SSedi~IPne~Vm~alsIYevLRsF~~~LrisPF~feDFcaAL~~~~~s 229 (1414)
T KOG1473|consen 154 G-R---PPRLDEPNPDLEEEPPLVPPLELPESSEDIGIPNEHVMDALSIYEVLRSFSRQLRISPFRFEDFCAALISHEQS 229 (1414)
T ss_pred C-C---CCCCCCCCCChhhccccCCCccCCCcccccCCcHHHHHHHHHHHHHHHhhcceEEeCCccHHHHHHHHHhcCch
Confidence 4 5 56778888888877799999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhhcccccccccccCCCCcCCccchhhccCCcCHHHHHHHHhhcCCCCcHHHHHhhh----CCCCCCc
Q psy5116 223 NLLVEIHVSLLKTIFREEDTQQTHFGPLDQKDSANSVLYFIDAMTWPEALRSYIESDKTFDEEVLNILN----TCEYPFT 298 (422)
Q Consensus 223 ~LL~EiHiaLLk~ll~~~~~~~~~~~~l~~~~s~ni~~~~LD~lTWPEiLr~YLes~~~f~~~vLkiL~----~~~YPfv 298 (422)
.||+|+|+||||+|+++++.++++|+++++++++||.|+|||.+|||||||+|+++++.++..+..++. -.+||+.
T Consensus 230 sLlaeVHvaLLrA~lr~eD~~~Thfs~~d~KdsvnI~l~liD~lTWPevLrqY~ea~~~ad~~v~~~~n~fv~~~eY~~~ 309 (1414)
T KOG1473|consen 230 SLLAEVHVALLRALLREEDRLSTHFSPLDSKDSVNIDLYLIDTLTWPEVLRQYFEADKHADGPVWDIFNPFVVEDEYPYR 309 (1414)
T ss_pred hHHHHHHHHHHHHHhhhhhhcccccCccccccceeeeeehhccccHHHHHHHHHHhccccCcchhhhhcccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999887777776 5789999
Q ss_pred hhhHHHHHHHHhhhhhcccCcccccccccCCccccccccccccCCeeEeCCCCCCccccccCCCCCCCCCCCCccccccc
Q psy5116 299 NIEKRLRVLQFLTDQILITSPVREDLIHEGGFQYDDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCK 378 (422)
Q Consensus 299 ~vE~KLkVLQfL~Dq~L~t~~vRee~~~e~~~~~dd~C~vC~~gG~ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~ 378 (422)
++++|++|||||+|+||..+..|++++++++++.+++|++|++.|+++||..||+.||+.|+.||+..+|...|.|-.|.
T Consensus 310 pv~~klkILQ~L~Dq~l~~~s~R~e~~se~~~~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~ 389 (1414)
T KOG1473|consen 310 PVSNKLKILQFLCDQFLTVNSLRDEIDSEGEIEYDDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCN 389 (1414)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhcccceeecccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCcccCCchhhhcccccccccceeecCCCeeeeeeceecC
Q psy5116 379 AHKVTGVTDCLPDVEKSGLLCRQEHLGFDRAGRKYWFLSRRIFM 422 (422)
Q Consensus 379 ~~k~~g~~dc~~~~ek~~~l~r~e~lg~Dr~gR~yw~~~rri~v 422 (422)
.+++.|+.+|+.+.+|+....|+++||+|||||+|||+.|||+|
T Consensus 390 ~hkvngvvd~vl~~~K~~~~iR~~~iG~dr~gr~ywfi~rrl~I 433 (1414)
T KOG1473|consen 390 IHKVNGVVDCVLPPSKNVDSIRHTPIGRDRYGRKYWFISRRLRI 433 (1414)
T ss_pred hhccCcccccccChhhcccceeccCCCcCccccchhceeeeeEE
Confidence 99999999999999999999999999999999999999999987
No 2
>PF02791 DDT: DDT domain; InterPro: IPR004022 This domain is predicted to be a DNA binding domain. The DDT domain is named after (DNA binding homeobox and Different Transcription factors). It is found in foetal Alzheimer antigen and several hypothetical and uncharacterised proteins.
Probab=99.65 E-value=1.5e-16 Score=123.51 Aligned_cols=60 Identities=37% Similarity=0.621 Sum_probs=56.7
Q ss_pred hHhHHHHHHHHHHHHhcccccccCCcCHHHHHHHHccCCCcchHHHHHHHHHHhhhcccc
Q psy5116 182 REYVMQTLSIYEVLRHFKSLIRLSPFRFEDFCAVLNFEEQSNLLVEIHVSLLKTIFREED 241 (422)
Q Consensus 182 ~e~vg~~L~v~efL~~F~~~L~LsPFtledf~~AL~~~~~~~LL~EiHiaLLk~ll~~~~ 241 (422)
++.|+++||||+||++|+++|+|+|||||||++||.+.+++.|++|||++||++|+++.+
T Consensus 1 ~~~~~~~L~v~~Fl~~F~~~L~L~~ftlddf~~AL~~~~~~~ll~ei~~~LL~~l~~~~~ 60 (61)
T PF02791_consen 1 GEAFGDLLMVWEFLNTFGEVLGLSPFTLDDFEQALLCNDPSGLLAEIHCALLKALLADEE 60 (61)
T ss_pred CcHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHcCCCcchhHHHHHHHHHHHHHhccC
Confidence 368999999999999999999999999999999999999999999999999999998654
No 3
>smart00571 DDT domain in different transcription and chromosome remodeling factors.
Probab=99.64 E-value=2e-16 Score=123.74 Aligned_cols=60 Identities=45% Similarity=0.767 Sum_probs=57.0
Q ss_pred hHhHHHHHHHHHHHHhcccccccCCcC--HHHHHHHHccCCCcchHHHHHHHHHHhhhcccc
Q psy5116 182 REYVMQTLSIYEVLRHFKSLIRLSPFR--FEDFCAVLNFEEQSNLLVEIHVSLLKTIFREED 241 (422)
Q Consensus 182 ~e~vg~~L~v~efL~~F~~~L~LsPFt--ledf~~AL~~~~~~~LL~EiHiaLLk~ll~~~~ 241 (422)
++.|+++||||+||++|+++|.|+||+ ||||++||.+.+++.+++|||++||++|+++.+
T Consensus 1 ~~~~~d~l~V~eFl~~F~~~L~L~~f~~~l~~f~~Al~~~~~~~ll~ei~~~LL~~i~~d~~ 62 (63)
T smart00571 1 NEAFGDLLMVYEFLRSFGKVLGLSPFRATLEDFIAALKCRDQNGLLTEVHVVLLRAILKDEG 62 (63)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHhcCCcchHHHHHHHHHHHHHHhCCC
Confidence 468999999999999999999999999 999999999999999999999999999998654
No 4
>KOG4299|consensus
Probab=98.78 E-value=1.6e-09 Score=115.66 Aligned_cols=50 Identities=40% Similarity=1.177 Sum_probs=45.4
Q ss_pred cccccccccCCee---EeCCCCCCccccccCCCCC--CCCCCCCccccccccccc
Q psy5116 333 DDHCRVCHRVGEL---LCCETCPAVFHLECVDPPL--RDVPQEDWQCNLCKAHKV 382 (422)
Q Consensus 333 dd~C~vC~~gG~l---l~Cd~Cp~afHl~Cl~Ppl--~~iP~g~W~C~~C~~~k~ 382 (422)
.++|..|++.|.. +|||+||.+||+.||+||+ .++|.|.|+|++|.++-.
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~~ 307 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKSV 307 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeeee
Confidence 5699999998875 9999999999999999995 599999999999998753
No 5
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.46 E-value=3.9e-08 Score=72.83 Aligned_cols=45 Identities=38% Similarity=1.120 Sum_probs=38.5
Q ss_pred ccccccc---CCeeEeCCCCCCccccccCCCCCC--CCCCCCcccccccc
Q psy5116 335 HCRVCHR---VGELLCCETCPAVFHLECVDPPLR--DVPQEDWQCNLCKA 379 (422)
Q Consensus 335 ~C~vC~~---gG~ll~Cd~Cp~afHl~Cl~Ppl~--~iP~g~W~C~~C~~ 379 (422)
+|.+|++ .+++|.|+.|...||..|++|+.. .++.+.|+|+.|..
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 4788887 567999999999999999999887 55556999999964
No 6
>KOG0825|consensus
Probab=98.38 E-value=9.6e-08 Score=103.91 Aligned_cols=48 Identities=33% Similarity=0.935 Sum_probs=41.8
Q ss_pred ccccccccCC---eeEeCCCCCCc-cccccCCCCCCCCCCCCcccccccccc
Q psy5116 334 DHCRVCHRVG---ELLCCETCPAV-FHLECVDPPLRDVPQEDWQCNLCKAHK 381 (422)
Q Consensus 334 d~C~vC~~gG---~ll~Cd~Cp~a-fHl~Cl~Ppl~~iP~g~W~C~~C~~~k 381 (422)
-.|.+|.... -||+||.|+.+ ||++||+|++..+|-+.|||++|.-..
T Consensus 216 ~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL~ 267 (1134)
T KOG0825|consen 216 VKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLLE 267 (1134)
T ss_pred ccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchhhh
Confidence 3588887743 48999999999 999999999999999999999997654
No 7
>KOG1244|consensus
Probab=98.31 E-value=2.3e-07 Score=91.02 Aligned_cols=48 Identities=31% Similarity=0.960 Sum_probs=42.1
Q ss_pred ccccccccc---CCeeEeCCCCCCccccccCCCCCCCCCCCCccccccccc
Q psy5116 333 DDHCRVCHR---VGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAH 380 (422)
Q Consensus 333 dd~C~vC~~---gG~ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~ 380 (422)
...|.+|+. ..+||+||-|.+.||++||.||+...|+|.|.|-.|...
T Consensus 281 ck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~ 331 (336)
T KOG1244|consen 281 CKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEE 331 (336)
T ss_pred cceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHH
Confidence 456888876 346999999999999999999999999999999999653
No 8
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=98.30 E-value=3.3e-07 Score=83.16 Aligned_cols=30 Identities=47% Similarity=1.155 Sum_probs=27.3
Q ss_pred ccccccCCCCCCCCCCCCcccccccccccC
Q psy5116 354 VFHLECVDPPLRDVPQEDWQCNLCKAHKVT 383 (422)
Q Consensus 354 afHl~Cl~Ppl~~iP~g~W~C~~C~~~k~~ 383 (422)
.||+.||+|||..+|+|+|+||.|..++..
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~ 30 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKSG 30 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCCC
Confidence 599999999999999999999999987643
No 9
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0383|consensus
Probab=98.26 E-value=2.8e-07 Score=101.04 Aligned_cols=53 Identities=42% Similarity=0.926 Sum_probs=48.3
Q ss_pred ccccccccccccCCeeEeCCCCCCccccccCCCCCCCCCCCCccccccccccc
Q psy5116 330 FQYDDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKV 382 (422)
Q Consensus 330 ~~~dd~C~vC~~gG~ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~k~ 382 (422)
..+.+.|.+|+.+|++||||.|+.+||.+|+++|+...|.++|.|+.|.+...
T Consensus 44 ~~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~~ 96 (696)
T KOG0383|consen 44 DAEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCPKN 96 (696)
T ss_pred hhhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccCCC
Confidence 34567999999999999999999999999999999999999999999976654
No 11
>KOG0955|consensus
Probab=98.03 E-value=2.9e-06 Score=96.63 Aligned_cols=85 Identities=24% Similarity=0.554 Sum_probs=65.6
Q ss_pred CCccccccccccccC-----CeeEeCCCCCCccccccCCCCCCCCCCCCcccccccccccCCcccCCchhhhcccccccc
Q psy5116 328 GGFQYDDHCRVCHRV-----GELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKVTGVTDCLPDVEKSGLLCRQE 402 (422)
Q Consensus 328 ~~~~~dd~C~vC~~g-----G~ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~k~~g~~dc~~~~ek~~~l~r~e 402 (422)
..++.|..|.||.++ ..+|.||.|+.++|+.|++ ...+|+|.|.|..|...+ .+...|..++.+.|..++.
T Consensus 214 ~~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~-~~~v~c~~cp~~~gAFkqt- 289 (1051)
T KOG0955|consen 214 ALLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQSP-QRPVRCLLCPSKGGAFKQT- 289 (1051)
T ss_pred cccCCCccceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhccCc-CcccceEeccCCCCcceec-
Confidence 345678899999884 3489999999999999999 567999999999999887 3557899999998865543
Q ss_pred cceeecCCCeeeeeeceecC
Q psy5116 403 HLGFDRAGRKYWFLSRRIFM 422 (422)
Q Consensus 403 ~lg~Dr~gR~yw~~~rri~v 422 (422)
|+ || |=+++..|||
T Consensus 290 ----~d-gr-w~Hv~caiwi 303 (1051)
T KOG0955|consen 290 ----DD-GR-WAHVVCAIWI 303 (1051)
T ss_pred ----cC-Cc-eeeeehhhcc
Confidence 33 54 3444445543
No 12
>KOG0954|consensus
Probab=97.97 E-value=4.1e-06 Score=91.16 Aligned_cols=80 Identities=25% Similarity=0.612 Sum_probs=68.4
Q ss_pred ccccccccccC-----CeeEeCCCCCCccccccCCCCCCCCCCCCcccccccccccCCcccCCchhhhccccccccccee
Q psy5116 332 YDDHCRVCHRV-----GELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKVTGVTDCLPDVEKSGLLCRQEHLGF 406 (422)
Q Consensus 332 ~dd~C~vC~~g-----G~ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~k~~g~~dc~~~~ek~~~l~r~e~lg~ 406 (422)
++..|.||..+ .+|++||.|....|+.|++ +..+|+|.|.|..|.-. -...|+.++.|+|.|+..
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyG--Ile~p~gpWlCr~Calg---~~ppCvLCPkkGGamK~~----- 339 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACYG--ILEVPEGPWLCRTCALG---IEPPCVLCPKKGGAMKPT----- 339 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhhc--eeecCCCCeeehhcccc---CCCCeeeccccCCccccc-----
Confidence 56689998775 4799999999999999999 89999999999999765 345799999999987543
Q ss_pred ecCCCeeeeeeceecC
Q psy5116 407 DRAGRKYWFLSRRIFM 422 (422)
Q Consensus 407 Dr~gR~yw~~~rri~v 422 (422)
.-|-+|-++.+.|||
T Consensus 340 -~sgT~wAHvsCALwI 354 (893)
T KOG0954|consen 340 -KSGTKWAHVSCALWI 354 (893)
T ss_pred -CCCCeeeEeeeeecc
Confidence 567799999999886
No 13
>KOG1973|consensus
Probab=97.87 E-value=5.2e-06 Score=82.43 Aligned_cols=45 Identities=36% Similarity=0.938 Sum_probs=38.9
Q ss_pred cccc-cccCCeeEeCCC--CC-CccccccCCCCCCCCCCCCcccccccccc
Q psy5116 335 HCRV-CHRVGELLCCET--CP-AVFHLECVDPPLRDVPQEDWQCNLCKAHK 381 (422)
Q Consensus 335 ~C~v-C~~gG~ll~Cd~--Cp-~afHl~Cl~Ppl~~iP~g~W~C~~C~~~k 381 (422)
+|.. |...|++|-||. |+ .+||+.|++ |...|.|.|||+.|....
T Consensus 221 yC~Cnqvsyg~Mi~CDn~~C~~eWFH~~CVG--L~~~PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 221 YCICNQVSYGKMIGCDNPGCPIEWFHFTCVG--LKTKPKGKWYCPRCKAEN 269 (274)
T ss_pred EEEecccccccccccCCCCCCcceEEEeccc--cccCCCCcccchhhhhhh
Confidence 5543 555899999999 99 999999999 889999999999997654
No 14
>KOG0956|consensus
Probab=97.76 E-value=1.2e-05 Score=87.20 Aligned_cols=79 Identities=23% Similarity=0.595 Sum_probs=63.6
Q ss_pred cccccccC-----CeeEeCCC--CCCccccccCCCCCCCCCCCCcccccccccccCCcccCCchhhhcccccccccceee
Q psy5116 335 HCRVCHRV-----GELLCCET--CPAVFHLECVDPPLRDVPQEDWQCNLCKAHKVTGVTDCLPDVEKSGLLCRQEHLGFD 407 (422)
Q Consensus 335 ~C~vC~~g-----G~ll~Cd~--Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~k~~g~~dc~~~~ek~~~l~r~e~lg~D 407 (422)
-|.||.+. .-||.||+ |.-+.|+.|++ +..+|.|.|||..|....-.-..-|..+..|.|.|+|.+-=|
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYG--IvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~G-- 82 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYG--IVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGG-- 82 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcce--eEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCC--
Confidence 59999773 35999998 99999999999 889999999999998765444467999999999999875332
Q ss_pred cCCCeeeeeeceecC
Q psy5116 408 RAGRKYWFLSRRIFM 422 (422)
Q Consensus 408 r~gR~yw~~~rri~v 422 (422)
|-++++.|.|
T Consensus 83 -----WAHVVCALYI 92 (900)
T KOG0956|consen 83 -----WAHVVCALYI 92 (900)
T ss_pred -----ceEEEEEeec
Confidence 5566666654
No 15
>KOG1512|consensus
Probab=97.55 E-value=3.1e-05 Score=76.80 Aligned_cols=47 Identities=34% Similarity=0.875 Sum_probs=39.7
Q ss_pred cccccccccC---CeeEeCCCCCCccccccCCCCCCCCCCCCcccc-cccccc
Q psy5116 333 DDHCRVCHRV---GELLCCETCPAVFHLECVDPPLRDVPQEDWQCN-LCKAHK 381 (422)
Q Consensus 333 dd~C~vC~~g---G~ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~-~C~~~k 381 (422)
...|.+|+++ .++++||.|++.||..|++ |..+|.|.|+|- .|....
T Consensus 314 C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVG--L~~lP~G~WICD~~C~~~~ 364 (381)
T KOG1512|consen 314 CELCRICLGPVIESEHLFCDVCDRGPHTLCVG--LQDLPRGEWICDMRCREAT 364 (381)
T ss_pred cHhhhccCCcccchheeccccccCCCCccccc--cccccCccchhhhHHHHhc
Confidence 4568888775 4799999999999999999 999999999997 465544
No 16
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.40 E-value=7.3e-05 Score=73.09 Aligned_cols=45 Identities=40% Similarity=1.070 Sum_probs=38.8
Q ss_pred cccccccccC--CeeEeCCC--CC-CccccccCCCCCCCCCCCCccccccccc
Q psy5116 333 DDHCRVCHRV--GELLCCET--CP-AVFHLECVDPPLRDVPQEDWQCNLCKAH 380 (422)
Q Consensus 333 dd~C~vC~~g--G~ll~Cd~--Cp-~afHl~Cl~Ppl~~iP~g~W~C~~C~~~ 380 (422)
.-+|. |++. |+||-||. |. -+||+.|++ |...|.|-|||+.|+..
T Consensus 221 ~lYCf-CqqvSyGqMVaCDn~nCkrEWFH~~CVG--Lk~pPKG~WYC~eCk~~ 270 (271)
T COG5034 221 ELYCF-CQQVSYGQMVACDNANCKREWFHLECVG--LKEPPKGKWYCPECKKA 270 (271)
T ss_pred eeEEE-ecccccccceecCCCCCchhheeccccc--cCCCCCCcEeCHHhHhc
Confidence 34675 8775 89999998 88 699999999 99999999999999753
No 17
>KOG0957|consensus
Probab=97.18 E-value=0.00013 Score=76.93 Aligned_cols=46 Identities=37% Similarity=1.066 Sum_probs=40.0
Q ss_pred ccccccccCCe---eEeCCCCCCccccccCCCCCCCCCCC----Ccccccccc
Q psy5116 334 DHCRVCHRVGE---LLCCETCPAVFHLECVDPPLRDVPQE----DWQCNLCKA 379 (422)
Q Consensus 334 d~C~vC~~gG~---ll~Cd~Cp~afHl~Cl~Ppl~~iP~g----~W~C~~C~~ 379 (422)
-.|.||.+.-+ ++.||+|...||+-||+|||..+|.. -|.|..|..
T Consensus 545 ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECdk 597 (707)
T KOG0957|consen 545 YSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECDK 597 (707)
T ss_pred eeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeeccccc
Confidence 46999988654 88999999999999999999999975 399999943
No 18
>KOG4323|consensus
Probab=97.17 E-value=0.00016 Score=76.21 Aligned_cols=48 Identities=29% Similarity=0.814 Sum_probs=39.5
Q ss_pred ccccccccC-----CeeEeCCCCCCccccccCCCCCCC----CCCCCcccccccccc
Q psy5116 334 DHCRVCHRV-----GELLCCETCPAVFHLECVDPPLRD----VPQEDWQCNLCKAHK 381 (422)
Q Consensus 334 d~C~vC~~g-----G~ll~Cd~Cp~afHl~Cl~Ppl~~----iP~g~W~C~~C~~~k 381 (422)
..|.||+.| .+||.|+.|...||+.|+-|+... -+...|+|..|...+
T Consensus 169 ~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 169 LQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGP 225 (464)
T ss_pred ceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccch
Confidence 349999864 369999999999999999998763 245679999998765
No 19
>KOG1245|consensus
Probab=97.01 E-value=0.00013 Score=86.15 Aligned_cols=49 Identities=39% Similarity=1.011 Sum_probs=43.9
Q ss_pred cccccccccCC---eeEeCCCCCCccccccCCCCCCCCCCCCcccccccccc
Q psy5116 333 DDHCRVCHRVG---ELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHK 381 (422)
Q Consensus 333 dd~C~vC~~gG---~ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~k 381 (422)
...|.+|...+ +++.|+.|..+||+.|+.|-+..+|.++|+|+.|+...
T Consensus 1108 ~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1108 NALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred hhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 45899997754 48999999999999999999999999999999998765
No 20
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=97.00 E-value=0.00027 Score=74.56 Aligned_cols=64 Identities=22% Similarity=0.594 Sum_probs=49.1
Q ss_pred cccccccccccCC-----eeEeCCCCCCccccccCCCCCCCCCCCCcccccccccccCCcccCCchhhhccc
Q psy5116 331 QYDDHCRVCHRVG-----ELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKVTGVTDCLPDVEKSGL 397 (422)
Q Consensus 331 ~~dd~C~vC~~gG-----~ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~k~~g~~dc~~~~ek~~~ 397 (422)
.-|+.|.+|.... -++.||+|..+.|+.|++ +..+|+|.|+|..|...+ -.+.-|.-+....|.
T Consensus 191 ~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYG--I~f~peG~WlCrkCi~~~-~~i~~C~fCps~dGa 259 (669)
T COG5141 191 EFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYG--IQFLPEGFWLCRKCIYGE-YQIRCCSFCPSSDGA 259 (669)
T ss_pred hhhhhhHhccccccCCcceEEEecCcchhhhhhccc--ceecCcchhhhhhhcccc-cceeEEEeccCCCCc
Confidence 4577899997743 389999999999999999 678999999999998765 233445555554443
No 21
>KOG4443|consensus
Probab=96.94 E-value=0.00037 Score=75.67 Aligned_cols=46 Identities=33% Similarity=0.905 Sum_probs=40.1
Q ss_pred cccccccccCC---eeEeCCCCCCccccccCCCCCCCCCCCCccccccc
Q psy5116 333 DDHCRVCHRVG---ELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCK 378 (422)
Q Consensus 333 dd~C~vC~~gG---~ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~ 378 (422)
.-+|..|+.+| ++++|+.|..+||.+|..|+...+|.|.|+|+.|.
T Consensus 68 crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~ 116 (694)
T KOG4443|consen 68 CRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCT 116 (694)
T ss_pred ceeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHH
Confidence 34677777655 58999999999999999999999999999999984
No 22
>KOG1473|consensus
Probab=96.91 E-value=0.00015 Score=82.34 Aligned_cols=79 Identities=20% Similarity=0.230 Sum_probs=63.8
Q ss_pred ccccccccccCCeeEeCCC-CCCcccc-ccCC--CCCCCCCCCCcccccccccccCCcccCCchhhhcccccccccceee
Q psy5116 332 YDDHCRVCHRVGELLCCET-CPAVFHL-ECVD--PPLRDVPQEDWQCNLCKAHKVTGVTDCLPDVEKSGLLCRQEHLGFD 407 (422)
Q Consensus 332 ~dd~C~vC~~gG~ll~Cd~-Cp~afHl-~Cl~--Ppl~~iP~g~W~C~~C~~~k~~g~~dc~~~~ek~~~l~r~e~lg~D 407 (422)
+.+.|.+|+..+.++||++ |+.+||+ .||+ ---..++++-|+|+.|...++.-+ .+-...++.+.-+|+|
T Consensus 427 i~rrl~Ie~~det~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rqM~lT------~~ltne~R~~~~f~~~ 500 (1414)
T KOG1473|consen 427 ISRRLRIEGMDETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQMGLT------EELTNELRGAVDFGED 500 (1414)
T ss_pred eeeeeEEecCCCcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHhccch------hhhhhhhhcccccccC
Confidence 3568999999999999999 9999999 9999 433588999999999999886533 2222334567899999
Q ss_pred cCCCeeeee
Q psy5116 408 RAGRKYWFL 416 (422)
Q Consensus 408 r~gR~yw~~ 416 (422)
.|||.|-.-
T Consensus 501 ~h~r~~l~~ 509 (1414)
T KOG1473|consen 501 PHGRLFLGR 509 (1414)
T ss_pred CCcceeeec
Confidence 999999764
No 23
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=95.98 E-value=0.0015 Score=45.86 Aligned_cols=34 Identities=35% Similarity=1.026 Sum_probs=19.9
Q ss_pred CeeEeCCCCCCccccccCCCCCCCCCCC-Cccccccc
Q psy5116 343 GELLCCETCPAVFHLECVDPPLRDVPQE-DWQCNLCK 378 (422)
Q Consensus 343 G~ll~Cd~Cp~afHl~Cl~Ppl~~iP~g-~W~C~~C~ 378 (422)
..+|.|+.|..+.|..|.+ +..+|.+ +|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CYG--v~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYG--VSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT---SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCC--cccCCCCCcEECCcCC
Confidence 4689999999999999999 5666766 79999884
No 24
>PF15613 WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2
Probab=95.38 E-value=0.0089 Score=42.68 Aligned_cols=17 Identities=47% Similarity=1.075 Sum_probs=15.7
Q ss_pred ccccceeecCCCeeeee
Q psy5116 400 RQEHLGFDRAGRKYWFL 416 (422)
Q Consensus 400 r~e~lg~Dr~gR~yw~~ 416 (422)
|.++||.||+|.+||.+
T Consensus 1 R~~pLG~DR~~NrYwwf 17 (38)
T PF15613_consen 1 RLKPLGKDRYGNRYWWF 17 (38)
T ss_pred CcccccccCCCceEEEE
Confidence 56899999999999988
No 25
>KOG4299|consensus
Probab=94.21 E-value=0.024 Score=61.67 Aligned_cols=47 Identities=45% Similarity=1.128 Sum_probs=39.9
Q ss_pred cccccccccCCeeEeCCCCCCccccccCCCCCC-CCCCCCcccccccc
Q psy5116 333 DDHCRVCHRVGELLCCETCPAVFHLECVDPPLR-DVPQEDWQCNLCKA 379 (422)
Q Consensus 333 dd~C~vC~~gG~ll~Cd~Cp~afHl~Cl~Ppl~-~iP~g~W~C~~C~~ 379 (422)
-..|.+|..+|+++||+.|+.+||+.|.++++. ..+...|.|..|..
T Consensus 47 ~ts~~~~~~~gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~ 94 (613)
T KOG4299|consen 47 ATSCGICKSGGNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCPK 94 (613)
T ss_pred hhhcchhhhcCCccccccCccccchhccCcccCcccccccccccCCCc
Confidence 568999999999999999999999999999987 22234788888865
No 26
>KOG0957|consensus
Probab=92.92 E-value=0.074 Score=56.84 Aligned_cols=67 Identities=24% Similarity=0.521 Sum_probs=52.1
Q ss_pred ccccccc-----CCeeEeCCCCCCccccccCCCCC-CCCCCC-------CcccccccccccCCcccCCchhhhccccccc
Q psy5116 335 HCRVCHR-----VGELLCCETCPAVFHLECVDPPL-RDVPQE-------DWQCNLCKAHKVTGVTDCLPDVEKSGLLCRQ 401 (422)
Q Consensus 335 ~C~vC~~-----gG~ll~Cd~Cp~afHl~Cl~Ppl-~~iP~g-------~W~C~~C~~~k~~g~~dc~~~~ek~~~l~r~ 401 (422)
.|.||-. .|++|.||.|+-..|--|++.-- ..||.+ .|||--|++.-.. -+|..+..+.|..+++
T Consensus 121 iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~--P~CElCPn~~GifKet 198 (707)
T KOG0957|consen 121 ICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSL--PHCELCPNRFGIFKET 198 (707)
T ss_pred EEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCC--CccccCCCcCCccccc
Confidence 7999944 57899999999999999998541 244443 5999999985422 5799999999988876
Q ss_pred cc
Q psy5116 402 EH 403 (422)
Q Consensus 402 e~ 403 (422)
+.
T Consensus 199 Di 200 (707)
T KOG0957|consen 199 DI 200 (707)
T ss_pred ch
Confidence 53
No 27
>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions. These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.
Probab=91.83 E-value=0.064 Score=29.88 Aligned_cols=10 Identities=50% Similarity=1.069 Sum_probs=3.9
Q ss_pred CCCCCCCCCC
Q psy5116 6 KRRGRPPKTP 15 (422)
Q Consensus 6 ~~~~~~~~~~ 15 (422)
|+||||+|+.
T Consensus 2 r~RGRP~k~~ 11 (13)
T PF02178_consen 2 RKRGRPRKNA 11 (13)
T ss_dssp --SS--TT--
T ss_pred CcCCCCcccc
Confidence 7899999975
No 28
>KOG1512|consensus
Probab=90.99 E-value=0.084 Score=53.00 Aligned_cols=76 Identities=22% Similarity=0.388 Sum_probs=52.8
Q ss_pred cccccccccccC---------CeeEeCCCCCCccccccCCCCCC---CCCCCCcccccccccccCCcccCCchhhhcccc
Q psy5116 331 QYDDHCRVCHRV---------GELLCCETCPAVFHLECVDPPLR---DVPQEDWQCNLCKAHKVTGVTDCLPDVEKSGLL 398 (422)
Q Consensus 331 ~~dd~C~vC~~g---------G~ll~Cd~Cp~afHl~Cl~Ppl~---~iP~g~W~C~~C~~~k~~g~~dc~~~~ek~~~l 398 (422)
.....|.+|-++ ..+++|..|..++|..|++-+.. .+....|.|..|.-=. -| .+..
T Consensus 256 ~~~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~-----IC------~~P~ 324 (381)
T KOG1512|consen 256 QRRNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCR-----IC------LGPV 324 (381)
T ss_pred cchhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhh-----cc------CCcc
Confidence 344578888553 35999999999999999984433 2334589999995311 11 1223
Q ss_pred cccccceeecCCCeeeeee
Q psy5116 399 CRQEHLGFDRAGRKYWFLS 417 (422)
Q Consensus 399 ~r~e~lg~Dr~gR~yw~~~ 417 (422)
.-.|++=.|++.|.|+-+|
T Consensus 325 ~E~E~~FCD~CDRG~HT~C 343 (381)
T KOG1512|consen 325 IESEHLFCDVCDRGPHTLC 343 (381)
T ss_pred cchheeccccccCCCCccc
Confidence 4458888999999998776
No 29
>KOG4628|consensus
Probab=90.22 E-value=0.28 Score=50.72 Aligned_cols=49 Identities=33% Similarity=0.691 Sum_probs=36.2
Q ss_pred cccccccc---CCeeEeCCCCCCccccccCCCCCCCCCCCCcccccccccccCCc
Q psy5116 334 DHCRVCHR---VGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKVTGV 385 (422)
Q Consensus 334 d~C~vC~~---gG~ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~k~~g~ 385 (422)
+.|.+|-+ .|+.|--=-|.-.||..|++|.|... .=+||.|++.-.++.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~di~~~~ 281 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRDIRTDS 281 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCcCCCCC
Confidence 68999977 35544445689999999999987643 237999998754433
No 30
>PF15612 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 2Y9Y_B.
Probab=89.88 E-value=0.14 Score=37.84 Aligned_cols=39 Identities=36% Similarity=0.485 Sum_probs=31.3
Q ss_pred HHHhhhCCCCCCchhhHHHHHHHHhhhhhcccCcccccc
Q psy5116 286 VLNILNTCEYPFTNIEKRLRVLQFLTDQILITSPVREDL 324 (422)
Q Consensus 286 vLkiL~~~~YPfv~vE~KLkVLQfL~Dq~L~t~~vRee~ 324 (422)
....+....|...+++.|+.+|++||+..+.+..+|+.+
T Consensus 5 ~~~~l~~~~y~~L~~~~kl~iL~~L~~~~l~s~~vr~~i 43 (50)
T PF15612_consen 5 LAPPLETGEYYELSPEEKLEILRALCDQLLSSSSVRNEI 43 (50)
T ss_dssp G-CCCCCSTCCCS-HHHHHHHHHHHHHHHCC-CCHHHHH
T ss_pred hhHHHHcCCcccCCHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 344667789999999999999999999999888888755
No 31
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=89.10 E-value=0.18 Score=38.74 Aligned_cols=29 Identities=28% Similarity=0.831 Sum_probs=25.3
Q ss_pred cccccccc----CCeeEeCCCCCCccccccCCC
Q psy5116 334 DHCRVCHR----VGELLCCETCPAVFHLECVDP 362 (422)
Q Consensus 334 d~C~vC~~----gG~ll~Cd~Cp~afHl~Cl~P 362 (422)
..|.+|++ +++++.|..|.+.||-.|...
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 46999987 578999999999999999864
No 32
>smart00384 AT_hook DNA binding domain with preference for A/T rich regions. Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).
Probab=88.68 E-value=0.24 Score=32.55 Aligned_cols=14 Identities=43% Similarity=0.921 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCCC
Q psy5116 5 IKRRGRPPKTPNTE 18 (422)
Q Consensus 5 ~~~~~~~~~~~~~~ 18 (422)
.|+||||||.....
T Consensus 1 kRkRGRPrK~~~~~ 14 (26)
T smart00384 1 KRKRGRPRKAPKDX 14 (26)
T ss_pred CCCCCCCCCCCCcc
Confidence 37999999988743
No 33
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=88.32 E-value=0.21 Score=46.62 Aligned_cols=45 Identities=31% Similarity=0.841 Sum_probs=32.5
Q ss_pred ccccccc------CCeeEeCCCCCCccccccCCCCCC------CCCCCC--cccccccc
Q psy5116 335 HCRVCHR------VGELLCCETCPAVFHLECVDPPLR------DVPQED--WQCNLCKA 379 (422)
Q Consensus 335 ~C~vC~~------gG~ll~Cd~Cp~afHl~Cl~Ppl~------~iP~g~--W~C~~C~~ 379 (422)
.|.+|+. .|.||.|-+|..+||..||++-.. .+-+++ ..|-.|+.
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig 59 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIG 59 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcC
Confidence 3778853 367999999999999999997652 233332 56777754
No 34
>KOG1246|consensus
Probab=85.06 E-value=0.65 Score=53.52 Aligned_cols=47 Identities=38% Similarity=1.030 Sum_probs=41.6
Q ss_pred ccccccccCCe--eEeCCCCCCccccccCCCCCCCCCCCCccccccccc
Q psy5116 334 DHCRVCHRVGE--LLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAH 380 (422)
Q Consensus 334 d~C~vC~~gG~--ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~ 380 (422)
..|..|.++.. ++.|+.|...||..|..+++..+++++|.|+.|...
T Consensus 156 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 156 PQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred hhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 47888988663 349999999999999999999999999999999776
No 35
>KOG1081|consensus
Probab=84.71 E-value=0.63 Score=49.87 Aligned_cols=50 Identities=24% Similarity=0.476 Sum_probs=37.2
Q ss_pred CccccccccccccCCeeEeCCCCCCccccccCCCCCCCCCCCCcccccccccc
Q psy5116 329 GFQYDDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHK 381 (422)
Q Consensus 329 ~~~~dd~C~vC~~gG~ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~k 381 (422)
.....+.|.+|.++|.+++|+.|..++|-.|.. ...|.+.|.|..|..-.
T Consensus 85 ~~~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~~---~~~~~c~~~~~d~~~~~ 134 (463)
T KOG1081|consen 85 PKIEPSECFVCFKGGSLVTCKSRIQAPHRKCKP---AQLEKCSKRCTDCRAFK 134 (463)
T ss_pred cCCCcchhccccCCCccceeccccccccccCcC---ccCcccccCCcceeeec
Confidence 344567899999999999999888777777764 45566667766665443
No 36
>KOG3612|consensus
Probab=83.06 E-value=1.1 Score=48.64 Aligned_cols=48 Identities=27% Similarity=0.456 Sum_probs=39.8
Q ss_pred cccccccccCCeeEeCCCCCCccccccCCCCCCCCCCC--Ccccccccccc
Q psy5116 333 DDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQE--DWQCNLCKAHK 381 (422)
Q Consensus 333 dd~C~vC~~gG~ll~Cd~Cp~afHl~Cl~Ppl~~iP~g--~W~C~~C~~~k 381 (422)
+-+|..|+..|..+.|+.|-+.||..|+.|. ..+++. -|.|+.|..-+
T Consensus 60 d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~-~q~r~~s~p~~~p~p~s~k 109 (588)
T KOG3612|consen 60 DPFCFECHLPGAVLKCIVCHRSFHENCQSPD-PQKRNYSVPSDKPQPYSFK 109 (588)
T ss_pred CcccccccCCcceeeeehhhccccccccCcc-hhhccccccccCCcccccC
Confidence 4589999999999999999999999999876 444443 59999996554
No 37
>KOG0383|consensus
Probab=80.52 E-value=0.33 Score=54.25 Aligned_cols=53 Identities=19% Similarity=0.244 Sum_probs=47.4
Q ss_pred CccccccccccccCCeeEeCCCCCCccccccCCC-CCCCCCCCCcccccccccc
Q psy5116 329 GFQYDDHCRVCHRVGELLCCETCPAVFHLECVDP-PLRDVPQEDWQCNLCKAHK 381 (422)
Q Consensus 329 ~~~~dd~C~vC~~gG~ll~Cd~Cp~afHl~Cl~P-pl~~iP~g~W~C~~C~~~k 381 (422)
+.-+|..|.+|.+.+.++.|..|.+.||..|++| |+...+-+.|.|+.|..+-
T Consensus 502 e~~~d~~~~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~ 555 (696)
T KOG0383|consen 502 EEFHDISCEEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKY 555 (696)
T ss_pred hhcchhhHHHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHH
Confidence 3446789999999999999999999999999999 8888888999999997654
No 38
>KOG4443|consensus
Probab=79.77 E-value=0.52 Score=52.01 Aligned_cols=51 Identities=25% Similarity=0.653 Sum_probs=37.1
Q ss_pred CccccccccccccC-----CeeEeCCCCCCccccccCCCCCCCCC-CCCcccccccc
Q psy5116 329 GFQYDDHCRVCHRV-----GELLCCETCPAVFHLECVDPPLRDVP-QEDWQCNLCKA 379 (422)
Q Consensus 329 ~~~~dd~C~vC~~g-----G~ll~Cd~Cp~afHl~Cl~Ppl~~iP-~g~W~C~~C~~ 379 (422)
.......|.+|... |.++.|..|...||..|+.-.+...- .+-|.|+.|+.
T Consensus 14 ~~~~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv 70 (694)
T KOG4443|consen 14 AIIVCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV 70 (694)
T ss_pred hhhhhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee
Confidence 34456678888764 45999999999999999985544331 22399999953
No 39
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=79.11 E-value=0.57 Score=39.22 Aligned_cols=44 Identities=27% Similarity=0.625 Sum_probs=27.7
Q ss_pred ccccccCCe--eEeCCCCCCccccccCCCCCCCCCCCCccccccccc
Q psy5116 336 CRVCHRVGE--LLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAH 380 (422)
Q Consensus 336 C~vC~~gG~--ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~ 380 (422)
|..|.-+|+ -|.-..|...||+.|+.-.+..- ...=.||-|+..
T Consensus 35 Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~-~~~~~CPmCR~~ 80 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQ-SSKGQCPMCRQP 80 (85)
T ss_pred CCCccCCCCCCceeeccCccHHHHHHHHHHHccc-cCCCCCCCcCCe
Confidence 333444454 22334599999999998766542 223489999865
No 40
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=67.70 E-value=0.35 Score=34.52 Aligned_cols=40 Identities=30% Similarity=0.820 Sum_probs=25.6
Q ss_pred ccccccccC---C-eeEeCCCCCCccccccCCCCCCCCCCCCccccccc
Q psy5116 334 DHCRVCHRV---G-ELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCK 378 (422)
Q Consensus 334 d~C~vC~~g---G-~ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~ 378 (422)
|.|.+|... + .++... |.-.||..|+...+.. .-.||.|+
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~----~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKR----NNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHH----SSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHh----CCcCCccC
Confidence 358888662 3 344444 9999999999865443 23788874
No 41
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=65.54 E-value=4.4 Score=38.69 Aligned_cols=38 Identities=26% Similarity=0.709 Sum_probs=29.6
Q ss_pred ccccccccC--------CeeEeCCCCCCccccccCCCCCCCCCCCCccccccccc
Q psy5116 334 DHCRVCHRV--------GELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAH 380 (422)
Q Consensus 334 d~C~vC~~g--------G~ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~ 380 (422)
..|.+|+.. ....-|..|.+.||..|... =.||.|...
T Consensus 153 fiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~---------~~CpkC~R~ 198 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK---------KSCPKCARR 198 (202)
T ss_pred CCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC---------CCCCCcHhH
Confidence 478888764 25789999999999999872 139999654
No 42
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=63.52 E-value=3.1 Score=31.08 Aligned_cols=34 Identities=44% Similarity=1.003 Sum_probs=17.4
Q ss_pred eCCCCCCccccccCCC--------CCCCCCCCCcccccccccc
Q psy5116 347 CCETCPAVFHLECVDP--------PLRDVPQEDWQCNLCKAHK 381 (422)
Q Consensus 347 ~Cd~Cp~afHl~Cl~P--------pl~~iP~g~W~C~~C~~~k 381 (422)
.|..|...|.-.=-+| +...+|+ +|.||.|...|
T Consensus 3 ~C~~CgyvYd~~~Gd~~~~i~pGt~F~~Lp~-~w~CP~C~a~K 44 (47)
T PF00301_consen 3 QCPVCGYVYDPEKGDPENGIPPGTPFEDLPD-DWVCPVCGAPK 44 (47)
T ss_dssp EETTTSBEEETTTBBGGGTB-TT--GGGS-T-T-B-TTTSSBG
T ss_pred CCCCCCEEEcCCcCCcccCcCCCCCHHHCCC-CCcCcCCCCcc
Confidence 3555665665443332 2345554 79999998765
No 43
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=63.24 E-value=3.8 Score=34.69 Aligned_cols=29 Identities=28% Similarity=0.827 Sum_probs=25.1
Q ss_pred ccccccccc-CCeeEeCCC--CCCccccccCC
Q psy5116 333 DDHCRVCHR-VGELLCCET--CPAVFHLECVD 361 (422)
Q Consensus 333 dd~C~vC~~-gG~ll~Cd~--Cp~afHl~Cl~ 361 (422)
...|.+|+. .|-.+-|.. |..+||..|.-
T Consensus 55 ~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 55 KLKCSICGKSGGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred CCcCcCCCCCCceeEEcCCCCCCcCCCHHHHH
Confidence 457999998 577889998 99999999975
No 44
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=61.86 E-value=5.2 Score=30.20 Aligned_cols=34 Identities=38% Similarity=0.957 Sum_probs=20.8
Q ss_pred eCCCCCCccccccCCC--------CCCCCCCCCcccccccccc
Q psy5116 347 CCETCPAVFHLECVDP--------PLRDVPQEDWQCNLCKAHK 381 (422)
Q Consensus 347 ~Cd~Cp~afHl~Cl~P--------pl~~iP~g~W~C~~C~~~k 381 (422)
.|..|...|...==+| +..++|+ +|.||.|...+
T Consensus 3 ~C~~CgyiYd~~~Gd~~~~i~pGt~f~~Lp~-~w~CP~C~a~K 44 (50)
T cd00730 3 ECRICGYIYDPAEGDPDEGIPPGTPFEDLPD-DWVCPVCGAGK 44 (50)
T ss_pred CCCCCCeEECCCCCCcccCcCCCCCHhHCCC-CCCCCCCCCcH
Confidence 3666777776443222 2234555 89999997765
No 45
>KOG1244|consensus
Probab=61.25 E-value=4.3 Score=40.86 Aligned_cols=65 Identities=26% Similarity=0.494 Sum_probs=47.1
Q ss_pred CCeeEeCCCCCCccccccCCCCCC---CCCCCCcccccccccccCCcccCCchhhhcccccccccceeecCCCeeeeee
Q psy5116 342 VGELLCCETCPAVFHLECVDPPLR---DVPQEDWQCNLCKAHKVTGVTDCLPDVEKSGLLCRQEHLGFDRAGRKYWFLS 417 (422)
Q Consensus 342 gG~ll~Cd~Cp~afHl~Cl~Ppl~---~iP~g~W~C~~C~~~k~~g~~dc~~~~ek~~~l~r~e~lg~Dr~gR~yw~~~ 417 (422)
+.+|+-|.-|+++=|.+||--... .+-...|.|..|+.=..=|+.+ +-..+|=.|.+.|-|+--|
T Consensus 243 peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csicgtse-----------nddqllfcddcdrgyhmyc 310 (336)
T KOG1244|consen 243 PEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTSE-----------NDDQLLFCDDCDRGYHMYC 310 (336)
T ss_pred chhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccccCcC-----------CCceeEeecccCCceeeEe
Confidence 346999999999999999973322 3445689999998765545421 1245677899999998655
No 46
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=60.33 E-value=3.8 Score=32.67 Aligned_cols=47 Identities=26% Similarity=0.588 Sum_probs=19.1
Q ss_pred cccccccc----CCe--eEeCC--CCCCccccccCCCCCCCCCC-------CCccccccccc
Q psy5116 334 DHCRVCHR----VGE--LLCCE--TCPAVFHLECVDPPLRDVPQ-------EDWQCNLCKAH 380 (422)
Q Consensus 334 d~C~vC~~----gG~--ll~Cd--~Cp~afHl~Cl~Ppl~~iP~-------g~W~C~~C~~~ 380 (422)
..|.||.. .++ .+.|+ .|...||+.||--.+...+. -.+-||.|..+
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 35889865 232 47898 89999999999744322211 13569998654
No 47
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=58.19 E-value=5.1 Score=32.53 Aligned_cols=30 Identities=27% Similarity=0.844 Sum_probs=25.4
Q ss_pred ccccccccccC-CeeEeCCC--CCCccccccCC
Q psy5116 332 YDDHCRVCHRV-GELLCCET--CPAVFHLECVD 361 (422)
Q Consensus 332 ~dd~C~vC~~g-G~ll~Cd~--Cp~afHl~Cl~ 361 (422)
....|.+|+.. |-.+-|.. |...||..|.-
T Consensus 35 ~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~ 67 (90)
T PF13771_consen 35 RKLKCSICKKKGGACIGCSHPGCSRSFHVPCAR 67 (90)
T ss_pred hCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHc
Confidence 34579999998 88888876 99999999976
No 48
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=55.16 E-value=6.8 Score=32.38 Aligned_cols=31 Identities=23% Similarity=0.614 Sum_probs=21.8
Q ss_pred ccccccccccc--CCeeEeCCCCCCccccccCC
Q psy5116 331 QYDDHCRVCHR--VGELLCCETCPAVFHLECVD 361 (422)
Q Consensus 331 ~~dd~C~vC~~--gG~ll~Cd~Cp~afHl~Cl~ 361 (422)
..+..|.+|++ +.....---|+..||..|..
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 44567999998 33444444566999999975
No 49
>COG1773 Rubredoxin [Energy production and conversion]
Probab=53.67 E-value=9 Score=29.68 Aligned_cols=17 Identities=41% Similarity=1.075 Sum_probs=12.9
Q ss_pred CCCCCCCCcccccccccc
Q psy5116 364 LRDVPQEDWQCNLCKAHK 381 (422)
Q Consensus 364 l~~iP~g~W~C~~C~~~k 381 (422)
+..+|+ +|.||.|-..|
T Consensus 30 fedlPd-~w~CP~Cg~~K 46 (55)
T COG1773 30 FEDLPD-DWVCPECGVGK 46 (55)
T ss_pred hhhCCC-ccCCCCCCCCH
Confidence 566765 89999997644
No 50
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=49.07 E-value=59 Score=33.38 Aligned_cols=27 Identities=26% Similarity=0.604 Sum_probs=20.9
Q ss_pred cccccccccc-------------CCeeEeCCCCCCccccc
Q psy5116 332 YDDHCRVCHR-------------VGELLCCETCPAVFHLE 358 (422)
Q Consensus 332 ~dd~C~vC~~-------------gG~ll~Cd~Cp~afHl~ 358 (422)
+..+|.||+. |...+.|..|...+|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~ 225 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV 225 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc
Confidence 4568999976 12578999999998864
No 51
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=47.43 E-value=3.7 Score=27.83 Aligned_cols=41 Identities=29% Similarity=0.635 Sum_probs=27.5
Q ss_pred ccccccCC-eeEeCCCCCCccccccCCCCCCCCCCCCcccccccc
Q psy5116 336 CRVCHRVG-ELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKA 379 (422)
Q Consensus 336 C~vC~~gG-~ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~ 379 (422)
|.+|...- +.+....|.-.||..|+...+.. +...||.|..
T Consensus 2 C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~---~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEFREPVVLLPCGHVFCRSCIDKWLKS---GKNTCPLCRT 43 (45)
T ss_pred CCcCchhhhCceEecCCCChhcHHHHHHHHHh---CcCCCCCCCC
Confidence 67776653 44445569999999998754332 4567888864
No 52
>PHA02929 N1R/p28-like protein; Provisional
Probab=41.71 E-value=9 Score=37.81 Aligned_cols=45 Identities=24% Similarity=0.572 Sum_probs=31.0
Q ss_pred ccccccccccCCe--------eEeCCCCCCccccccCCCCCCCCCCCCccccccccc
Q psy5116 332 YDDHCRVCHRVGE--------LLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAH 380 (422)
Q Consensus 332 ~dd~C~vC~~gG~--------ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~ 380 (422)
.+..|.+|...-. +..-..|.-.||..|+...+... =.||.|+..
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~----~tCPlCR~~ 225 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEK----NTCPVCRTP 225 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcC----CCCCCCCCE
Confidence 3568999987421 12334799999999998755432 269999764
No 53
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=37.49 E-value=22 Score=26.03 Aligned_cols=28 Identities=29% Similarity=0.647 Sum_probs=21.8
Q ss_pred cccccccc-----CCeeEeCCCCCCccccccCC
Q psy5116 334 DHCRVCHR-----VGELLCCETCPAVFHLECVD 361 (422)
Q Consensus 334 d~C~vC~~-----gG~ll~Cd~Cp~afHl~Cl~ 361 (422)
..|.+|++ ....+.|..|....|..|+.
T Consensus 12 ~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~ 44 (53)
T PF00130_consen 12 TYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLS 44 (53)
T ss_dssp EB-TTSSSBECSSSSCEEEETTTT-EEETTGGC
T ss_pred CCCcccCcccCCCCCCeEEECCCCChHhhhhhh
Confidence 47888877 34688999999999999986
No 54
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=34.76 E-value=5.2 Score=25.98 Aligned_cols=27 Identities=19% Similarity=0.447 Sum_probs=17.2
Q ss_pred ccccccCCeeEeCCCCCCccccccCCC
Q psy5116 336 CRVCHRVGELLCCETCPAVFHLECVDP 362 (422)
Q Consensus 336 C~vC~~gG~ll~Cd~Cp~afHl~Cl~P 362 (422)
|.+|........-..|.-.||..|+..
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~ 27 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRK 27 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHH
Confidence 556666544334446888888888764
No 55
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=34.61 E-value=32 Score=38.71 Aligned_cols=45 Identities=22% Similarity=0.524 Sum_probs=27.6
Q ss_pred cccccccC--CeeEeCCCCCCccc-cccCCCCCCCCCCCCccccccccc
Q psy5116 335 HCRVCHRV--GELLCCETCPAVFH-LECVDPPLRDVPQEDWQCNLCKAH 380 (422)
Q Consensus 335 ~C~vC~~g--G~ll~Cd~Cp~afH-l~Cl~Ppl~~iP~g~W~C~~C~~~ 380 (422)
.|..|+.. .+..+|..|+.... ..|-.- ...+|.+.=||+.|-..
T Consensus 3 ~Cp~Cg~~n~~~akFC~~CG~~l~~~~Cp~C-G~~~~~~~~fC~~CG~~ 50 (645)
T PRK14559 3 ICPQCQFENPNNNRFCQKCGTSLTHKPCPQC-GTEVPVDEAHCPNCGAE 50 (645)
T ss_pred cCCCCCCcCCCCCccccccCCCCCCCcCCCC-CCCCCcccccccccCCc
Confidence 46667653 34567777776543 344433 24567777799999554
No 56
>KOG1829|consensus
Probab=34.48 E-value=9.7 Score=42.10 Aligned_cols=30 Identities=37% Similarity=0.821 Sum_probs=22.4
Q ss_pred eEeCCCCCCccccccCCCCCCCCCCCCcccccccccc
Q psy5116 345 LLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHK 381 (422)
Q Consensus 345 ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~k 381 (422)
..-|+.|.+.||..|+.-- .+ .||.|...+
T Consensus 531 ~~rC~~C~avfH~~C~~r~---s~----~CPrC~R~q 560 (580)
T KOG1829|consen 531 TRRCSTCLAVFHKKCLRRK---SP----CCPRCERRQ 560 (580)
T ss_pred ceeHHHHHHHHHHHHHhcc---CC----CCCchHHHH
Confidence 4679999999999998722 21 299997654
No 57
>PLN02436 cellulose synthase A
Probab=33.29 E-value=29 Score=41.07 Aligned_cols=47 Identities=21% Similarity=0.621 Sum_probs=37.7
Q ss_pred ccccccccccC------Ce-eEeCCCCCCccccccCCCCCCCCCCCCcccccccccc
Q psy5116 332 YDDHCRVCHRV------GE-LLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHK 381 (422)
Q Consensus 332 ~dd~C~vC~~g------G~-ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~k 381 (422)
+..+|.+|++. |+ -+-|..|.-.-...|+. -...+|.=.||.|+...
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cye---yer~eg~~~Cpqckt~Y 88 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYE---YERREGNQACPQCKTRY 88 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhh---hhhhcCCccCcccCCch
Confidence 55699999883 44 58999999999999997 45567788999997653
No 58
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=32.77 E-value=24 Score=39.25 Aligned_cols=41 Identities=24% Similarity=0.601 Sum_probs=28.8
Q ss_pred ccccccccccccCCeeEeCCCCCCccccccCCCCCCCCCCCCcccccccccc
Q psy5116 330 FQYDDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHK 381 (422)
Q Consensus 330 ~~~dd~C~vC~~gG~ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~k 381 (422)
+.--+.|..|+..|+.+-|+.|...++. ..+..|+.|..+.
T Consensus 65 V~v~~~c~~c~G~gkv~~c~~cG~~~~~-----------~~~~lc~~c~~~~ 105 (715)
T COG1107 65 VTVYDTCPECGGTGKVLTCDICGDIIVP-----------WEEGLCPECRRKP 105 (715)
T ss_pred EEEEeecccCCCceeEEeeccccceecC-----------cccccChhHhhCC
Confidence 3344578888888888888888877751 1123799998765
No 59
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=32.55 E-value=93 Score=31.90 Aligned_cols=26 Identities=23% Similarity=0.562 Sum_probs=20.1
Q ss_pred ccccccccc--------------CCeeEeCCCCCCccccc
Q psy5116 333 DDHCRVCHR--------------VGELLCCETCPAVFHLE 358 (422)
Q Consensus 333 dd~C~vC~~--------------gG~ll~Cd~Cp~afHl~ 358 (422)
..+|.||+. |...+.|..|...+|..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~ 223 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV 223 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc
Confidence 458999965 12489999999999864
No 60
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=31.49 E-value=21 Score=23.55 Aligned_cols=23 Identities=22% Similarity=0.699 Sum_probs=16.2
Q ss_pred CCCcccccccccccCCcccCCch
Q psy5116 369 QEDWQCNLCKAHKVTGVTDCLPD 391 (422)
Q Consensus 369 ~g~W~C~~C~~~k~~g~~dc~~~ 391 (422)
.|+|.|+.|..........|...
T Consensus 2 ~g~W~C~~C~~~N~~~~~~C~~C 24 (30)
T PF00641_consen 2 EGDWKCPSCTFMNPASRSKCVAC 24 (30)
T ss_dssp SSSEEETTTTEEEESSSSB-TTT
T ss_pred CcCccCCCCcCCchHHhhhhhCc
Confidence 47899999987765555566554
No 61
>PLN02400 cellulose synthase
Probab=31.34 E-value=35 Score=40.44 Aligned_cols=46 Identities=20% Similarity=0.590 Sum_probs=37.2
Q ss_pred ccccccccccC------Ce-eEeCCCCCCccccccCCCCCCCCCCCCccccccccc
Q psy5116 332 YDDHCRVCHRV------GE-LLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAH 380 (422)
Q Consensus 332 ~dd~C~vC~~g------G~-ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~ 380 (422)
+.++|.+|++. |+ -+-|..|.-.-.-.|+. -+.-+|.=.||+|+..
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYE---YERkeGnq~CPQCkTr 87 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYE---YERKDGTQCCPQCKTR 87 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhh---eecccCCccCcccCCc
Confidence 56799999883 44 58999999999999997 4556788899999765
No 62
>KOG2236|consensus
Probab=31.26 E-value=89 Score=33.83 Aligned_cols=42 Identities=14% Similarity=0.056 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHhcccccccCCcCHHHHHHHHccCCCcchHHHHH
Q psy5116 184 YVMQTLSIYEVLRHFKSLIRLSPFRFEDFCAVLNFEEQSNLLVEIH 229 (422)
Q Consensus 184 ~vg~~L~v~efL~~F~~~L~LsPFtledf~~AL~~~~~~~LL~EiH 229 (422)
-||.++.|.+.+-.-.-...+.+|.++- +.+.+...+|..||
T Consensus 210 plG~V~svv~~~VII~s~~~~~vlde~S----vlf~edR~~lG~I~ 251 (483)
T KOG2236|consen 210 PLGKVSSVVDQQVIIESTCNKEVLDEDS----VLFLEDRTALGQIF 251 (483)
T ss_pred chhHHHHHhhhceEEEeccCcccccccc----eEEeeccccchhhh
Confidence 5788888888765555555556665542 22333455555544
No 63
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=30.78 E-value=30 Score=40.95 Aligned_cols=46 Identities=22% Similarity=0.633 Sum_probs=37.2
Q ss_pred ccccccccccC------Ce-eEeCCCCCCccccccCCCCCCCCCCCCccccccccc
Q psy5116 332 YDDHCRVCHRV------GE-LLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAH 380 (422)
Q Consensus 332 ~dd~C~vC~~g------G~-ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~ 380 (422)
+..+|.+|++. |+ -+-|..|.-.-.-.|+. -+..+|.=.||+|+..
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYE---YEr~eG~q~CPqCktr 68 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYE---YERKDGNQSCPQCKTK 68 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhh---hhhhcCCccCCccCCc
Confidence 55699999883 44 58999999999999997 4556788899999765
No 64
>PF09292 Neil1-DNA_bind: Endonuclease VIII-like 1, DNA bind; InterPro: IPR015371 This domain is predominantly found in Endonuclease VIII-like 1 proteins and adopts a glucocorticoid receptor-like fold. Structural analysis reveals a zincless finger motif that is required for glycosylase activity []. ; PDB: 1TDH_A.
Probab=30.67 E-value=29 Score=24.95 Aligned_cols=12 Identities=50% Similarity=0.883 Sum_probs=8.4
Q ss_pred eeecCCCeeeee
Q psy5116 405 GFDRAGRKYWFL 416 (422)
Q Consensus 405 g~Dr~gR~yw~~ 416 (422)
-.|+|||.-||-
T Consensus 20 l~D~~gRTiWFq 31 (39)
T PF09292_consen 20 LRDRNGRTIWFQ 31 (39)
T ss_dssp EE-TTS-EEEES
T ss_pred ccccCCCEEEee
Confidence 469999999984
No 65
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=30.40 E-value=6.5 Score=31.47 Aligned_cols=27 Identities=30% Similarity=0.874 Sum_probs=18.7
Q ss_pred CCCCCCccccccCCCCCCCCCCCCccccccc
Q psy5116 348 CETCPAVFHLECVDPPLRDVPQEDWQCNLCK 378 (422)
Q Consensus 348 Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~ 378 (422)
=..|+-.||..|+..-+.. ...||.|+
T Consensus 47 ~~~C~H~FH~~Ci~~Wl~~----~~~CP~CR 73 (73)
T PF12678_consen 47 WGPCGHIFHFHCISQWLKQ----NNTCPLCR 73 (73)
T ss_dssp EETTSEEEEHHHHHHHHTT----SSB-TTSS
T ss_pred ecccCCCEEHHHHHHHHhc----CCcCCCCC
Confidence 3469999999999755433 33788885
No 66
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=29.85 E-value=27 Score=22.02 Aligned_cols=20 Identities=25% Similarity=0.866 Sum_probs=13.2
Q ss_pred CCcccccccccccCCcccCC
Q psy5116 370 EDWQCNLCKAHKVTGVTDCL 389 (422)
Q Consensus 370 g~W~C~~C~~~k~~g~~dc~ 389 (422)
++|.|+.|..........|.
T Consensus 1 g~W~C~~C~~~N~~~~~~C~ 20 (26)
T smart00547 1 GDWECPACTFLNFASRSKCF 20 (26)
T ss_pred CcccCCCCCCcChhhhcccc
Confidence 57999999766544444443
No 67
>PHA02664 hypothetical protein; Provisional
Probab=29.22 E-value=62 Score=33.67 Aligned_cols=15 Identities=7% Similarity=0.268 Sum_probs=9.0
Q ss_pred cccccccccCCCCCC
Q psy5116 87 QTLETDYHYGSDFED 101 (422)
Q Consensus 87 ~~~~~~~~~~~~~~~ 101 (422)
..+..+..-|-+|+-
T Consensus 425 adqdve~~~~~~~d~ 439 (534)
T PHA02664 425 ADQDVEAEAHDEFDQ 439 (534)
T ss_pred cccccccccCCCCCC
Confidence 344566666667764
No 68
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.10 E-value=15 Score=36.93 Aligned_cols=48 Identities=27% Similarity=0.549 Sum_probs=36.3
Q ss_pred ccccccccccCCeeEeCCCCCCccccccCCCCCCCCCCCCcccccccccc
Q psy5116 332 YDDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHK 381 (422)
Q Consensus 332 ~dd~C~vC~~gG~ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~k 381 (422)
.|-.|.+|-..-....|-.|...|.+.|+.-.+... .-=+||-|+.+-
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~--k~~~CplCRak~ 261 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKK--KYEFCPLCRAKV 261 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhh--ccccCchhhhhc
Confidence 355799999988888999999999999998422211 112799998764
No 69
>PLN02189 cellulose synthase
Probab=28.98 E-value=37 Score=40.08 Aligned_cols=48 Identities=19% Similarity=0.543 Sum_probs=37.9
Q ss_pred cccccccccccC------Ce-eEeCCCCCCccccccCCCCCCCCCCCCcccccccccc
Q psy5116 331 QYDDHCRVCHRV------GE-LLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHK 381 (422)
Q Consensus 331 ~~dd~C~vC~~g------G~-ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~k 381 (422)
.+.+.|.+|++. |+ -+-|..|.-.-...|+. -...+|.=.||.|+...
T Consensus 32 ~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cye---yer~eg~q~CpqCkt~Y 86 (1040)
T PLN02189 32 LDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYE---YERREGTQNCPQCKTRY 86 (1040)
T ss_pred ccCccccccccccCcCCCCCEEEeeccCCCccccchhh---hhhhcCCccCcccCCch
Confidence 356699999883 44 68999999999999996 45667888999997653
No 70
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=28.94 E-value=43 Score=22.76 Aligned_cols=12 Identities=42% Similarity=1.091 Sum_probs=9.4
Q ss_pred CCcccccccccc
Q psy5116 370 EDWQCNLCKAHK 381 (422)
Q Consensus 370 g~W~C~~C~~~k 381 (422)
.+|.||.|...+
T Consensus 16 ~~~~CP~Cg~~~ 27 (33)
T cd00350 16 APWVCPVCGAPK 27 (33)
T ss_pred CCCcCcCCCCcH
Confidence 579999997654
No 71
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=28.13 E-value=49 Score=21.97 Aligned_cols=26 Identities=35% Similarity=0.920 Sum_probs=20.1
Q ss_pred cccccccC--Ce-eEeCCCCCCccccccC
Q psy5116 335 HCRVCHRV--GE-LLCCETCPAVFHLECV 360 (422)
Q Consensus 335 ~C~vC~~g--G~-ll~Cd~Cp~afHl~Cl 360 (422)
.|.+|++. |. .--|+.|.-..|..|.
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 48888773 44 6678999999998884
No 72
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=27.88 E-value=15 Score=34.25 Aligned_cols=49 Identities=18% Similarity=0.570 Sum_probs=33.1
Q ss_pred cccccccccccCCeeE----eCCCCCCccccccCCCCCCCCCCCCcccccccccc
Q psy5116 331 QYDDHCRVCHRVGELL----CCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHK 381 (422)
Q Consensus 331 ~~dd~C~vC~~gG~ll----~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~k 381 (422)
..+..|++|+.+++.. .|-+--+.-|..|+.-.+.. .+...|+.|..+-
T Consensus 6 ~~~~~CRIC~~~~~~~~~PC~CkGs~k~VH~sCL~rWi~~--s~~~~CeiC~~~Y 58 (162)
T PHA02825 6 LMDKCCWICKDEYDVVTNYCNCKNENKIVHKECLEEWINT--SKNKSCKICNGPY 58 (162)
T ss_pred CCCCeeEecCCCCCCccCCcccCCCchHHHHHHHHHHHhc--CCCCcccccCCeE
Confidence 3456899998865421 34444567799999866553 3678899997653
No 73
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=27.41 E-value=26 Score=23.17 Aligned_cols=26 Identities=27% Similarity=0.661 Sum_probs=11.5
Q ss_pred cccccccCC---eeEeCCCCCCccccccC
Q psy5116 335 HCRVCHRVG---ELLCCETCPAVFHLECV 360 (422)
Q Consensus 335 ~C~vC~~gG---~ll~Cd~Cp~afHl~Cl 360 (422)
.|.+|+..+ -.-.|..|.-..|..|.
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 488888743 46789999999998873
No 74
>KOG4218|consensus
Probab=26.37 E-value=28 Score=36.40 Aligned_cols=51 Identities=27% Similarity=0.702 Sum_probs=33.3
Q ss_pred cccccccccccC--C---eeEeCCCCCCcc--------ccccCCCCCCCCCCC-Ccccccccccc
Q psy5116 331 QYDDHCRVCHRV--G---ELLCCETCPAVF--------HLECVDPPLRDVPQE-DWQCNLCKAHK 381 (422)
Q Consensus 331 ~~dd~C~vC~~g--G---~ll~Cd~Cp~af--------Hl~Cl~Ppl~~iP~g-~W~C~~C~~~k 381 (422)
+.++.|.||++. | .||-|++|..-| |-.|....-=.+... .=-||.|+..|
T Consensus 13 dl~ElCPVCGDkVSGYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRFQK 77 (475)
T KOG4218|consen 13 DLGELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRFQK 77 (475)
T ss_pred ccccccccccCccccceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhHHH
Confidence 345689999883 3 499999997655 445665433334332 45788887654
No 75
>KOG2114|consensus
Probab=26.11 E-value=24 Score=40.57 Aligned_cols=40 Identities=20% Similarity=0.629 Sum_probs=31.4
Q ss_pred ccccccccCCeeEeCC-CCCCccccccCCCCCCCCCCCCccccccccc
Q psy5116 334 DHCRVCHRVGELLCCE-TCPAVFHLECVDPPLRDVPQEDWQCNLCKAH 380 (422)
Q Consensus 334 d~C~vC~~gG~ll~Cd-~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~ 380 (422)
..|..|...=++-.-. .|.-+||+.|+. +++--||.|+..
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e-------~~~~~CP~C~~e 881 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLE-------DKEDKCPKCLPE 881 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhc-------cCcccCCccchh
Confidence 4799998876665444 599999999998 456789999873
No 76
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=25.60 E-value=12 Score=27.12 Aligned_cols=40 Identities=23% Similarity=0.682 Sum_probs=18.6
Q ss_pred ccccccC-CeeEeCC--CCCCccccccCCCCCCCCCCCCcccccc
Q psy5116 336 CRVCHRV-GELLCCE--TCPAVFHLECVDPPLRDVPQEDWQCNLC 377 (422)
Q Consensus 336 C~vC~~g-G~ll~Cd--~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C 377 (422)
|.+|++- -.-+.|. .|+..+|..|+.--+...... -||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~--~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNP--KCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS---B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCC--CCcCC
Confidence 5566652 2335688 699999999987444433321 67776
No 77
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=25.41 E-value=22 Score=30.74 Aligned_cols=46 Identities=20% Similarity=0.660 Sum_probs=28.3
Q ss_pred cccccccc--CCeeEeC------CCC---CCccccccCCCCCC-----CCCCCCcccccccc
Q psy5116 334 DHCRVCHR--VGELLCC------ETC---PAVFHLECVDPPLR-----DVPQEDWQCNLCKA 379 (422)
Q Consensus 334 d~C~vC~~--gG~ll~C------d~C---p~afHl~Cl~Ppl~-----~iP~g~W~C~~C~~ 379 (422)
..|..|.+ .+....| ..| ...|--.||.-.-. .+.+.+|.||.|+.
T Consensus 8 ~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 8 KTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 35777766 2333445 555 77787778653222 23456899999954
No 78
>KOG3970|consensus
Probab=25.09 E-value=25 Score=34.72 Aligned_cols=48 Identities=27% Similarity=0.807 Sum_probs=30.4
Q ss_pred ccccccccccC---CeeEeCCCCCCccccccCCCCCCCCCCC----Cccccccccc
Q psy5116 332 YDDHCRVCHRV---GELLCCETCPAVFHLECVDPPLRDVPQE----DWQCNLCKAH 380 (422)
Q Consensus 332 ~dd~C~vC~~g---G~ll~Cd~Cp~afHl~Cl~Ppl~~iP~g----~W~C~~C~~~ 380 (422)
++--|..|+.. |+.+ =-.|.-.||..|++---..+|-. -..||-|...
T Consensus 49 Y~pNC~LC~t~La~gdt~-RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~e 103 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTT-RLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQE 103 (299)
T ss_pred CCCCCceeCCccccCcce-eehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCc
Confidence 34458888763 3310 01288899999998544455532 3789999665
No 79
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=24.81 E-value=47 Score=39.28 Aligned_cols=47 Identities=21% Similarity=0.581 Sum_probs=37.6
Q ss_pred ccccccccccC------Ce-eEeCCCCCCccccccCCCCCCCCCCCCcccccccccc
Q psy5116 332 YDDHCRVCHRV------GE-LLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHK 381 (422)
Q Consensus 332 ~dd~C~vC~~g------G~-ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~k 381 (422)
+..+|.+|++. |+ -+-|..|.-.-...|+. -+..+|.=.||+|+.+.
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cye---ye~~~g~~~cp~c~t~y 67 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYE---YERSEGNQCCPQCNTRY 67 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhh---hhhhcCCccCCccCCch
Confidence 55689999883 44 58999999999999996 45567788999997653
No 80
>KOG3799|consensus
Probab=24.78 E-value=22 Score=32.55 Aligned_cols=50 Identities=28% Similarity=0.646 Sum_probs=34.2
Q ss_pred cccccccccccC----CeeEeCCCCCCccccccCCCCCCCCCCCCccccccccc
Q psy5116 331 QYDDHCRVCHRV----GELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAH 380 (422)
Q Consensus 331 ~~dd~C~vC~~g----G~ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~ 380 (422)
..|..|.+|++. |---.|.-|..-|.-.|-+-....-..-.|.|..|...
T Consensus 63 ~ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 63 GDDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred CcCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 456689999883 44456888888888888764332223346999999654
No 81
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=24.07 E-value=1.7e+02 Score=30.02 Aligned_cols=27 Identities=30% Similarity=0.779 Sum_probs=18.0
Q ss_pred cccccccccccC--------C------eeEeCCCCCCcccc
Q psy5116 331 QYDDHCRVCHRV--------G------ELLCCETCPAVFHL 357 (422)
Q Consensus 331 ~~dd~C~vC~~g--------G------~ll~Cd~Cp~afHl 357 (422)
++-.+|.||+.. | .-+-|.-|..-+|.
T Consensus 183 e~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~ 223 (308)
T COG3058 183 ESRQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHY 223 (308)
T ss_pred cccccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHH
Confidence 345689999761 1 35677777766665
No 82
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=23.80 E-value=43 Score=23.70 Aligned_cols=28 Identities=32% Similarity=0.748 Sum_probs=22.8
Q ss_pred cccccccc--C---CeeEeCCCCCCccccccCC
Q psy5116 334 DHCRVCHR--V---GELLCCETCPAVFHLECVD 361 (422)
Q Consensus 334 d~C~vC~~--g---G~ll~Cd~Cp~afHl~Cl~ 361 (422)
..|.+|++ . ..-+.|..|..+.|..|..
T Consensus 12 ~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~ 44 (50)
T cd00029 12 TFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCAD 44 (50)
T ss_pred CChhhcchhhhccccceeEcCCCCCchhhhhhc
Confidence 46999977 2 2578899999999999976
No 83
>KOG1632|consensus
Probab=23.15 E-value=41 Score=34.91 Aligned_cols=39 Identities=26% Similarity=0.656 Sum_probs=32.5
Q ss_pred CeeEeCCCCCCcccccc--CCCCCCCCCC-CCcccccccccc
Q psy5116 343 GELLCCETCPAVFHLEC--VDPPLRDVPQ-EDWQCNLCKAHK 381 (422)
Q Consensus 343 G~ll~Cd~Cp~afHl~C--l~Ppl~~iP~-g~W~C~~C~~~k 381 (422)
+.++-|+.|...||..| ++.+-...|. ..|+|..|....
T Consensus 73 ~~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~ 114 (345)
T KOG1632|consen 73 DLMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEAQ 114 (345)
T ss_pred hhhhccccccccccccccccCchhhcCCccccccccccchhh
Confidence 35789999999999999 9988776665 479999997654
No 84
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=22.86 E-value=65 Score=34.71 Aligned_cols=12 Identities=42% Similarity=0.573 Sum_probs=6.2
Q ss_pred CCCCCCCCCCCCC
Q psy5116 169 LELPRSSDDLLIP 181 (422)
Q Consensus 169 l~lP~ss~d~~ip 181 (422)
.+||. |+||.+-
T Consensus 187 P~LPD-STDFVCG 198 (458)
T PF10446_consen 187 PELPD-STDFVCG 198 (458)
T ss_pred CCCCC-cccccCC
Confidence 45555 4566543
No 85
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=22.81 E-value=40 Score=29.12 Aligned_cols=30 Identities=30% Similarity=0.744 Sum_probs=23.4
Q ss_pred ccccccccccC-----CeeEeCCCCCCccccccCC
Q psy5116 332 YDDHCRVCHRV-----GELLCCETCPAVFHLECVD 361 (422)
Q Consensus 332 ~dd~C~vC~~g-----G~ll~Cd~Cp~afHl~Cl~ 361 (422)
--+.|.+|+.. |+.+.|-.|...|++.=++
T Consensus 34 a~daCeiC~~~GY~q~g~~lvC~~C~~~~~~~~ig 68 (102)
T PF10080_consen 34 AFDACEICGPKGYYQEGDQLVCKNCGVRFNLPTIG 68 (102)
T ss_pred EEEeccccCCCceEEECCEEEEecCCCEEehhhcc
Confidence 34689999663 5788999999999876554
No 86
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=22.80 E-value=22 Score=34.10 Aligned_cols=49 Identities=20% Similarity=0.389 Sum_probs=32.3
Q ss_pred ccccccccccCCeeEeCCCCCCccccccCCCCCCC------------CCCCCccccccccc
Q psy5116 332 YDDHCRVCHRVGELLCCETCPAVFHLECVDPPLRD------------VPQEDWQCNLCKAH 380 (422)
Q Consensus 332 ~dd~C~vC~~gG~ll~Cd~Cp~afHl~Cl~Ppl~~------------iP~g~W~C~~C~~~ 380 (422)
.+..|.+|.+.-.-.....|.-.|+..|+...+.. .......||.|+..
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~ 77 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSD 77 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCc
Confidence 34579999885443333579999999999643211 01235689999765
No 87
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=22.66 E-value=28 Score=30.26 Aligned_cols=47 Identities=19% Similarity=0.533 Sum_probs=32.2
Q ss_pred ccccccccccC-----CeeEeCCCCCCccccccCCCCCCCCCCCCcccccccccc
Q psy5116 332 YDDHCRVCHRV-----GELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHK 381 (422)
Q Consensus 332 ~dd~C~vC~~g-----G~ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~k 381 (422)
++..|..|+.. +.-..|..|....-..|-.- ......|.|..|....
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~---~~~~~~WlC~vC~k~r 104 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY---SKKEPIWLCKVCQKQR 104 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE---TSSSCCEEEHHHHHHH
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc---CCCCCCEEChhhHHHH
Confidence 45589999772 23467999988888888762 3345689999997653
No 88
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=22.19 E-value=45 Score=36.19 Aligned_cols=31 Identities=29% Similarity=0.707 Sum_probs=17.5
Q ss_pred eeEeCCCCCCccccccCCCCCCCCCCCCcccccccc
Q psy5116 344 ELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKA 379 (422)
Q Consensus 344 ~ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~ 379 (422)
+|.+|..|.+.-...|+...+ ..||||+|..
T Consensus 4 ~L~fC~~C~~irc~~c~~~Ei-----~~~yCp~CL~ 34 (483)
T PF05502_consen 4 ELYFCEHCHKIRCPRCVSEEI-----DSYYCPNCLF 34 (483)
T ss_pred cceecccccccCChhhccccc-----ceeECccccc
Confidence 355666666555556665221 2477777753
No 89
>PLN02195 cellulose synthase A
Probab=21.97 E-value=57 Score=38.39 Aligned_cols=48 Identities=19% Similarity=0.493 Sum_probs=38.0
Q ss_pred cccccccccc------CCe-eEeCCCCCCccccccCCCCCCCCCCCCccccccccccc
Q psy5116 332 YDDHCRVCHR------VGE-LLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKV 382 (422)
Q Consensus 332 ~dd~C~vC~~------gG~-ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~k~ 382 (422)
+...|.+|++ .|+ -+-|..|.-.-.-.|+. -+..+|.=.||+|+....
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCye---yer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLE---YEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhh---hhhhcCCccCCccCCccc
Confidence 3458999988 244 58999999999999997 455678889999987753
No 90
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=21.95 E-value=53 Score=23.07 Aligned_cols=28 Identities=25% Similarity=0.701 Sum_probs=18.9
Q ss_pred EeCCCCCCccccccCCCCCCCCCCCCcccccccc
Q psy5116 346 LCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKA 379 (422)
Q Consensus 346 l~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~ 379 (422)
..|..|.+.||..=. .|..+..|..|-.
T Consensus 2 r~C~~Cg~~Yh~~~~------pP~~~~~Cd~cg~ 29 (36)
T PF05191_consen 2 RICPKCGRIYHIEFN------PPKVEGVCDNCGG 29 (36)
T ss_dssp EEETTTTEEEETTTB--------SSTTBCTTTTE
T ss_pred cCcCCCCCccccccC------CCCCCCccCCCCC
Confidence 368999999995433 2445678888854
No 91
>KOG1493|consensus
Probab=21.47 E-value=7.1 Score=32.32 Aligned_cols=30 Identities=30% Similarity=0.717 Sum_probs=21.6
Q ss_pred CCCCccccccCCCCCCCCCCCCccccccccc
Q psy5116 350 TCPAVFHLECVDPPLRDVPQEDWQCNLCKAH 380 (422)
Q Consensus 350 ~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~ 380 (422)
.|..+||..|+.-.+ +.|...=.||-|++.
T Consensus 50 ~C~h~fh~hCI~~wl-~~~tsq~~CPmcRq~ 79 (84)
T KOG1493|consen 50 YCLHAFHAHCILKWL-NTPTSQGQCPMCRQT 79 (84)
T ss_pred HHHHHHHHHHHHHHh-cCccccccCCcchhe
Confidence 577889999998543 445555688888753
No 92
>KOG4718|consensus
Probab=21.23 E-value=29 Score=33.94 Aligned_cols=49 Identities=22% Similarity=0.442 Sum_probs=34.2
Q ss_pred cccccccccc-CCeeEeCCCCCCccccccCCCCCCCCCCCCcccccccccc
Q psy5116 332 YDDHCRVCHR-VGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHK 381 (422)
Q Consensus 332 ~dd~C~vC~~-gG~ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~k 381 (422)
|-..|..|+. .-..+-|..|+-.||..|..--+...| .-|+|..|-.+.
T Consensus 180 nlk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~-~cphc~d~w~h~ 229 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRD-ICPHCGDLWTHP 229 (235)
T ss_pred HHHHHhHhHHHhheeeccCcccchhhhHHHHHHhcccC-cCCchhcccCcc
Confidence 4457999988 345678999999999999875444422 246666665554
No 93
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=21.21 E-value=2e+02 Score=34.25 Aligned_cols=46 Identities=9% Similarity=0.046 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhcccccccCCcCHHHHHHHHccCCCcchHHHHHHHHHHhh
Q psy5116 185 VMQTLSIYEVLRHFKSLIRLSPFRFEDFCAVLNFEEQSNLLVEIHVSLLKTI 236 (422)
Q Consensus 185 vg~~L~v~efL~~F~~~L~LsPFtledf~~AL~~~~~~~LL~EiHiaLLk~l 236 (422)
+.-.++|| .+..++.+|+|+..-+---+-|+- .-+-|+..+++-+.
T Consensus 947 i~SyilV~-~at~IG~vlGIse~VmGlTfLA~G-----TSIPDlisSvivAr 992 (1096)
T TIGR00927 947 MFSYLMVW-WAHQVGETIGISEEIMGLTILAAG-----TSIPDLITSVIVAR 992 (1096)
T ss_pred HHHHHHHH-HHHHhhhhcCCChhhhhhhhhhhh-----cccHHHHHHHHHHH
Confidence 34455665 578999999998543332233332 22455555555543
No 94
>KOG2141|consensus
Probab=21.15 E-value=97 Score=35.43 Aligned_cols=64 Identities=19% Similarity=0.161 Sum_probs=0.0
Q ss_pred ccCCCCCCCCCCCCcCCCCCCCCCC--CCCCCCCCCCCCcccccccccCCCccCCCCCCCCCCCCC
Q psy5116 94 HYGSDFEDSTDHDDDLGLSESETEP--EKDDPLDEMSDSDLSLSSFSTTSGTNKKFSYISRMSPEP 157 (422)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~p 157 (422)
||++++.++.+.+|+.+..+-+.++ +..+++++++++|+.-+---+-+...+..-.+..++++|
T Consensus 221 ~e~~e~~e~~~~~~~sgs~~~~e~e~e~~~~de~~e~~~~~~d~d~i~E~~~~~i~~s~~~~~~e~ 286 (822)
T KOG2141|consen 221 DEESEDSESGDEEDDSGSEDEDESEDEKDSVDEEEESEEDNEDDDGISEISNSEIRDSALKKSEEP 286 (822)
T ss_pred cccccccccccccccccCcccchhhhhccchhhhhhhhhcccCCccccccccccccCCccccCCCc
No 95
>KOG1734|consensus
Probab=20.92 E-value=45 Score=33.85 Aligned_cols=49 Identities=27% Similarity=0.468 Sum_probs=29.3
Q ss_pred ccccccccccccCCee----------EeCCCCCCccccccCCCCCCCCCCCCccccccccc
Q psy5116 330 FQYDDHCRVCHRVGEL----------LCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAH 380 (422)
Q Consensus 330 ~~~dd~C~vC~~gG~l----------l~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~ 380 (422)
-.++..|.||++.-+. +-==.|+.+||-.|+...-- + .-.=.||-|+.+
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWci-v-GKkqtCPYCKek 279 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCI-V-GKKQTCPYCKEK 279 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhhee-e-cCCCCCchHHHH
Confidence 3467799999873210 11125999999999863211 0 012368999654
No 96
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=20.04 E-value=57 Score=32.59 Aligned_cols=38 Identities=24% Similarity=0.608 Sum_probs=18.9
Q ss_pred cccccccccc----------C--C-eeEeCCCCCCccccccCCCCCCCCCCCCcccccccccc
Q psy5116 332 YDDHCRVCHR----------V--G-ELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHK 381 (422)
Q Consensus 332 ~dd~C~vC~~----------g--G-~ll~Cd~Cp~afHl~Cl~Ppl~~iP~g~W~C~~C~~~k 381 (422)
...+|.||+. + | ..+.|..|...+|..= ..|+.|-+..
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R------------~~Cp~Cg~~~ 221 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVR------------IKCPYCGNTD 221 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE--T------------TS-TTT---S
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecC------------CCCcCCCCCC
Confidence 3468999976 1 3 5899999999988532 3588886654
No 97
>PRK11827 hypothetical protein; Provisional
Probab=20.01 E-value=68 Score=25.26 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=15.4
Q ss_pred cccccccC------CeeEeCCCCCCcc
Q psy5116 335 HCRVCHRV------GELLCCETCPAVF 355 (422)
Q Consensus 335 ~C~vC~~g------G~ll~Cd~Cp~af 355 (422)
.|.+|+.. .+-+.|..|..+|
T Consensus 10 aCP~ckg~L~~~~~~~~Lic~~~~laY 36 (60)
T PRK11827 10 ACPVCNGKLWYNQEKQELICKLDNLAF 36 (60)
T ss_pred ECCCCCCcCeEcCCCCeEECCccCeec
Confidence 58888652 3457799998888
Done!