RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5116
(422 letters)
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein;
NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Length = 61
Score = 93.2 bits (232), Expect = 6e-24
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 331 QYDDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKVTG 384
+ + CRVC GELLCC+TCP+ +H+ C++PPL ++P +W C C + G
Sbjct: 7 HHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKG 60
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta,
PHD, protein binding, peptide binding metal binding
protein; NMR {Homo sapiens}
Length = 61
Score = 92.1 bits (229), Expect = 1e-23
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 332 YDDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKV 382
+ D+C VC + GE++ C+TCP +H+ C+DP + P+ W C C+ +
Sbjct: 10 HQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEGI 60
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced,
nucleosome, E3 ligase, transcription; NMR {Homo sapiens}
PDB: 2ke1_A 2kft_A
Length = 66
Score = 90.6 bits (225), Expect = 5e-23
Identities = 25/53 (47%), Positives = 33/53 (62%)
Query: 333 DDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKVTGV 385
+D C VC GEL+CC+ CP FHL C+ PPLR++P W+C+ C V V
Sbjct: 8 EDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEV 60
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 56
Score = 89.3 bits (222), Expect = 1e-22
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 327 EGGFQYDDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAH 380
G ++D C VC + G+LL C+TC V+HL+C+DPPL+ +P+ W C C+
Sbjct: 3 SGSSGHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 56
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC
complex, transcription; 1.43A {Homo sapiens}
Length = 60
Score = 86.7 bits (215), Expect = 1e-21
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 330 FQYDDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHK 381
++D C VC + G+LL C+TC V+HL+C+DPPL+ +P+ W C C+
Sbjct: 2 MIHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain,
-structure, transcription; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 88
Score = 87.3 bits (216), Expect = 1e-21
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 333 DDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKVTGVTDCLPDV 392
CRVC + G+L+ C C FHL+C P L+DVP E+W C+LC + + + D+
Sbjct: 25 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV--LPDLKEEDVDL 82
Query: 393 EKS 395
+
Sbjct: 83 QAC 85
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger,
bromodomain, SUMO, acetylation, alternative splicing,
metal-binding, nucleus; NMR {Homo sapiens}
Length = 189
Score = 84.5 bits (208), Expect = 3e-19
Identities = 25/84 (29%), Positives = 36/84 (42%)
Query: 333 DDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKVTGVTDCLPDV 392
CRVC + G+L+ C C FHL+C P L+DVP E+W C+LC D +
Sbjct: 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEEDGSLSL 61
Query: 393 EKSGLLCRQEHLGFDRAGRKYWFL 416
+ + L + L
Sbjct: 62 DGADSTGVVAKLSPANQRKCERVL 85
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural
protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Length = 142
Score = 75.6 bits (185), Expect = 1e-16
Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 7/65 (10%)
Query: 322 EDLIHEGGFQYDDHCRVCHRVGELLCCETCPAVFHLECVDPPL-------RDVPQEDWQC 374
D I D+ CR C G L+CC+ C F +C+ L W C
Sbjct: 52 SDDISRDSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYC 111
Query: 375 NLCKA 379
+C
Sbjct: 112 YICHP 116
Score = 27.1 bits (59), Expect = 6.8
Identities = 6/33 (18%), Positives = 9/33 (27%)
Query: 348 CETCPAVFHLECVDPPLRDVPQEDWQCNLCKAH 380
C C + D R + C C +
Sbjct: 17 CTACGQQVNHFQKDSIYRHPSLQVLICKNCFKY 49
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine
trimethylation, protein, histone-binding protein,
transcription-structural complex; HET: M3L; 0.93A {Homo
sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Length = 129
Score = 74.4 bits (182), Expect = 2e-16
Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 7/65 (10%)
Query: 322 EDLIHEGGFQYDDHCRVCHRVGELLCCETCPAVFHLECVDPPL-------RDVPQEDWQC 374
D I D+ CR C G L+CC+ C F +C+ L W C
Sbjct: 46 SDDISRDSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYC 105
Query: 375 NLCKA 379
+C
Sbjct: 106 YICHP 110
Score = 29.4 bits (65), Expect = 1.0
Identities = 6/39 (15%), Positives = 11/39 (28%)
Query: 342 VGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAH 380
++ C C + D R + C C +
Sbjct: 5 SMGIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKY 43
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger,
bromodomain, H4K16 acetylation, breast C
transcription-protein binding complex; HET: ALY; 1.70A
{Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Length = 184
Score = 72.3 bits (177), Expect = 3e-15
Identities = 28/83 (33%), Positives = 34/83 (40%)
Query: 333 DDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKVTGVTDCLPDV 392
+D C VC GELLCCE CP VFHL C P L + P +W C C+ V
Sbjct: 4 EDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEYDCDAP 63
Query: 393 EKSGLLCRQEHLGFDRAGRKYWF 415
+ + E L K
Sbjct: 64 SHNSEKKKTEGLVKLTPIDKRKC 86
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 51
Score = 63.5 bits (155), Expect = 2e-13
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 336 CRVCHRVGE---LLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKA 379
C+VC + GE L+ C+ C FHL C+ P L +VP +WQC C+
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 92
Score = 63.4 bits (154), Expect = 6e-13
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 18/84 (21%)
Query: 333 DDHCRVCHRVGE---LLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKVTGVTDCL 389
C+VC R E LL C+ C +H+ C+ PPL ++P+ W+C C +
Sbjct: 16 SYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAECKQ----- 70
Query: 390 PDVEKSGLLCRQEHLGFDRAGRKY 413
E GF++A ++Y
Sbjct: 71 ----------PPEAFGFEQATQEY 84
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger,
histone binding, chromosomal protein, DNA damag repair,
DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens}
PDB: 3a1a_A*
Length = 159
Score = 65.2 bits (158), Expect = 8e-13
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 13/83 (15%)
Query: 316 ITSPVREDLIHEGGFQYDD-----HCRVCHRVGELLCCET--CPAVFHLECVDPPL---- 364
++ E +QYDD +C +C E+L C C F +ECVD +
Sbjct: 57 GMCQNCKNCFLECAYQYDDDGYQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGA 116
Query: 365 --RDVPQEDWQCNLCKAHKVTGV 385
+ ++ W C +C G+
Sbjct: 117 AQAAIKEDPWNCYMCGHKGTYGL 139
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain,
TGF-beta, epigenetics, methylation, K9ME3, K14AC,
transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB:
3u5m_A* 3u5o_A* 3u5p_A*
Length = 207
Score = 65.3 bits (158), Expect = 2e-12
Identities = 25/58 (43%), Positives = 28/58 (48%)
Query: 333 DDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKVTGVTDCLP 390
+D C VC G+LLCCE CP VFHL C P L P DW C C+ V
Sbjct: 7 EDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKPEVEYDCD 64
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation,
nucleus, metal BIND protein; HET: ALY; NMR {Homo
sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Length = 114
Score = 62.0 bits (150), Expect = 3e-12
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 336 CRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKA 379
C +LL C+ C +H+ C++PP+ + P+ W C+LC
Sbjct: 64 CGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWE 107
Score = 37.3 bits (86), Expect = 0.001
Identities = 19/78 (24%), Positives = 26/78 (33%), Gaps = 17/78 (21%)
Query: 335 HCRVCH----------RVGELLCCETCPAVFHLECVDPPL---RDVPQEDWQCNLCKAHK 381
+C C R EL+ C C H C+ L V WQC CK+
Sbjct: 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCI 62
Query: 382 VTGVTDCLPDVEKSGLLC 399
+ G + + L C
Sbjct: 63 LCGT----SENDDQLLFC 76
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 77
Score = 60.2 bits (146), Expect = 6e-12
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 333 DDHCRVCHRVGE---LLCCETCPAVFHLECVDPPLRDVPQED-WQCNLCKA 379
CRVC E L C+ C +H+ C++PPL VP+E+ W C CK
Sbjct: 26 SCSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger,
transferase-structural protein; 1.47A {Homo sapiens}
PDB: 2ln0_A
Length = 112
Score = 60.8 bits (147), Expect = 8e-12
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 336 CRVCHRVGE----LLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKA 379
C C G+ +L C++C FH+EC DPPL +P+ W C +C+
Sbjct: 64 CSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111
Score = 42.7 bits (100), Expect = 2e-05
Identities = 16/79 (20%), Positives = 19/79 (24%), Gaps = 15/79 (18%)
Query: 333 DDHCRVCHRVG---------ELLCCETCPAVFHLECVDPPLR---DVPQEDWQCNLCKAH 380
C C EL+ C C H C+ V WQC C
Sbjct: 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIEC--- 61
Query: 381 KVTGVTDCLPDVEKSGLLC 399
K + L C
Sbjct: 62 KTCSSCRDQGKNADNMLFC 80
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD
domain, histone-lysine N-methyltransferase, H3 lysine-4
specific MLL3; NMR {Homo sapiens}
Length = 111
Score = 60.0 bits (145), Expect = 1e-11
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 333 DDHCRVCHRVGE---LLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKVTGVTDCL 389
+C VC G+ C TC +H C+D + + + WQC CK +
Sbjct: 7 GANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQN----CKQ 62
Query: 390 PDVEKSGLLCRQ 401
+ L+C
Sbjct: 63 SGEDSKMLVCDT 74
Score = 59.2 bits (143), Expect = 3e-11
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 336 CRVCHRVGE---LLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKA 379
C+ C + GE +L C+TC +H C+ P ++ VP W+C C+
Sbjct: 57 CQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation,
UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo
sapiens}
Length = 77
Score = 58.3 bits (141), Expect = 3e-11
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 333 DDHCRVCHRV---GELLCCETCPAVFHLECVDPPLRDVPQE-DWQCNLCKA 379
C +C + L C+ C FH+ C+DPPL VP E +W C C+
Sbjct: 26 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module,
epigenetic regulation, LI binding protein complex; 1.41A
{Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A
2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Length = 70
Score = 57.9 bits (140), Expect = 3e-11
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 333 DDHCRVCHRVGE---LLCCETCPAVFHLECVDPPLRDVPQE-DWQCNLCKA 379
C +C + L C+ C FH+ C+DPPL VP E +W C C+
Sbjct: 18 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated
H3K4, de novo DNA methylation, transferase regulator;
HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Length = 386
Score = 60.7 bits (146), Expect = 2e-10
Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 13/80 (16%)
Query: 319 PVREDLIHEGGFQYDD-----HCRVCHRVGELLCCE--TCPAVFHLECVDPPL------R 365
+D + F YDD +C +C LL C C + ECVD + +
Sbjct: 74 APCKDKFLDALFLYDDDGYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGK 133
Query: 366 DVPQEDWQCNLCKAHKVTGV 385
+W C LC +G+
Sbjct: 134 VHAMSNWVCYLCLPSSRSGL 153
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules,
epigenetic regulation, trimethylaion of lysine residue,
ligase-DNA binding protein; HET: M3L; 2.90A {Homo
sapiens}
Length = 226
Score = 59.0 bits (142), Expect = 3e-10
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 333 DDHCRVCHRV---GELLCCETCPAVFHLECVDPPLRDVPQE-DWQCNLCKA 379
C +C + L C+ C FH+ C+DPPL VP E +W C C+
Sbjct: 174 VCACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: g.50.1.2
Length = 88
Score = 54.3 bits (130), Expect = 1e-09
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 333 DDHCRVCHRV-----GELLCCETCPAVFHLECVDPPLRD----VPQEDWQCNLCKAHKVT 383
C VC ++ +L+ C+ C ++H +C P + D P+ W C C
Sbjct: 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75
Query: 384 GVTDCLPDVEKSG 396
SG
Sbjct: 76 MAQKNQKSGPSSG 88
>2k16_A Transcription initiation factor TFIID subunit 3; protein,
alternative splicing, metal-binding, nucleus,
phosphoprotein, transcription regulation; NMR {Mus
musculus} PDB: 2k17_A*
Length = 75
Score = 51.8 bits (124), Expect = 4e-09
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 336 CRVCHRV---GELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKA 379
C C++ ++ C+ C +H CV + W C C
Sbjct: 21 CPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator,
metal-binding, finger, signaling protein; NMR {Homo
sapiens}
Length = 71
Score = 50.3 bits (120), Expect = 1e-08
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 333 DDHCRVCHRVG-----ELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHK 381
D C +C +L C+ C H EC P +P+ W C C +
Sbjct: 16 DAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP--YIPEGQWLCRHCLQSR 67
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from
bromodomain-containing protein...; PHD finger, histone
CODE, transcription; NMR {Homo sapiens}
Length = 88
Score = 50.8 bits (121), Expect = 2e-08
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 333 DDHCRVCHRVG-----ELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHK 381
D C +C +L C+ C H EC P +P+ W C C +
Sbjct: 25 DAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP--YIPEGQWLCRHCLQSR 76
>2yt5_A Metal-response element-binding transcription factor 2;
zinc-regulated factor 1, ZIRF1, metal-response element
DNA-binding protein M96; NMR {Mus musculus}
Length = 66
Score = 47.6 bits (113), Expect = 1e-07
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 8/53 (15%)
Query: 333 DDHCRVCHR-----VGELLCCETCPAVFHLECVDPPLRDV---PQEDWQCNLC 377
C +C E++ C+ C +H C P + E W C C
Sbjct: 6 SGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQC 58
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene
regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Length = 62
Score = 43.4 bits (102), Expect = 3e-06
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 333 DDHCRVCHRV--GELLCCE--TCPAV-FHLECVDPPLRDVPQEDWQCNLCKA 379
+ +C++V GE++ C+ CP FH CV L P+ W C C+
Sbjct: 10 EPTYCLCNQVSYGEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 70
Score = 43.7 bits (103), Expect = 3e-06
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 333 DDHCRVCHRV--GELLCC--ETCPAV-FHLECVDPPLRDVPQEDWQCNLCKA 379
+C++V GE++ C + CP FH CV L + P+ W C C A
Sbjct: 5 SSGYCICNQVSYGEMVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTA 54
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger,
alpha-helical bundle, dimethyl-lysine, bromodom
chromatin regulator, metal-binding, nucleus; HET: MLY;
1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A*
3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Length = 174
Score = 44.9 bits (106), Expect = 8e-06
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 333 DDHCRVCHRVGE---LLCCETCPAVFHLECVDPPLRDVPQED-WQCNLCKAHK 381
+C E + C+ C +H CV + D + C C++ +
Sbjct: 8 KLYCICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING,
epigenetics, alternative splicing, metal-binding,
phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens}
PDB: 2pnx_A*
Length = 59
Score = 41.4 bits (97), Expect = 2e-05
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 333 DDHCRVCHRV--GELLCCETCPAV---FHLECVDPPLRDVPQEDWQCNLCKAHK 381
+ +CH+V GE++ C+ FH CVD L P+ W C C K
Sbjct: 8 EPTYCLCHQVSYGEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQEK 59
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation,
alternative splicing, anti-oncogene, cell cycle, coiled
C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A
{Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Length = 60
Score = 40.2 bits (94), Expect = 5e-05
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 333 DDHCRVCHRV--GELLCCETCPAV---FHLECVDPPLRDVPQEDWQCNLCKAHK 381
+ +CH+V GE++ C+ FH CV L P+ W C C +
Sbjct: 9 EPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQER 60
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 7e-05
Identities = 52/306 (16%), Positives = 86/306 (28%), Gaps = 137/306 (44%)
Query: 53 QGS----------ETSRRSTAKKGTKR-----------------KSNPPTR----GGRGG 81
QGS +TS A+ R +NP GG G
Sbjct: 1624 QGSQEQGMGMDLYKTS--KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG 1681
Query: 82 NQKRKQTLETDYHYGSDFEDSTDHDDDLGLSESETEPEKDDPLDEMSDSDLSLSSFSTTS 141
+ R+ + D G ++E + + + + +F
Sbjct: 1682 KRIRENYSAMIFETIVD-----------GKLKTE-------KIFKEINEHSTSYTFR--- 1720
Query: 142 GTNKKFSYISRMSPEPLWLQTERQIQP-LELPRSSDDLLIPREYVMQTLSIYEVLRHFKS 200
S + L T+ QP L L+ E + +E L+ K
Sbjct: 1721 ------------SEKGLLSATQFT-QPAL--------TLM--EK-----AAFEDLKS-KG 1751
Query: 201 LIRLSPFRF------EDFCA------VLNFEEQSNLLVEIHVSLLKTIFREEDTQQTHFG 248
LI F E + A V++ E V ++ +R G
Sbjct: 1752 LIPADAT-FAGHSLGE-YAALASLADVMSIESL--------VEVVF--YR---------G 1790
Query: 249 PLDQ----KDSANSVLYFIDAMTWP---------EALRSYIESDKTFDEEVLNILNTCEY 295
Q +D Y + A+ P EAL+ +E ++ I+N Y
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAIN-PGRVAASFSQEALQYVVERVGKRTGWLVEIVN---Y 1846
Query: 296 PFTNIE 301
N+E
Sbjct: 1847 ---NVE 1849
Score = 37.0 bits (85), Expect = 0.012
Identities = 45/274 (16%), Positives = 78/274 (28%), Gaps = 99/274 (36%)
Query: 57 TSRRS-TAKKGTKRKSNP-PTRGGRGGNQKRKQ---TLETDYHYGSDFEDSTDHDDD--- 108
S R T G+ PT +Q ++Q L + DD+
Sbjct: 4 YSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPT-------EGFAADDEPTT 56
Query: 109 --------LGLSESETEPEKDDPLDEMSDSDLSLSSFSTT--SGTNKKFSYISRMSPEPL 158
LG S EP K D++ + L L+ F G +
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLN--LCLTEFENCYLEGND-------------- 100
Query: 159 WLQTERQIQPL--ELPRSSDDLLIPREYVMQTLSIYEVLRHF--KSLIRLSP---FR--- 208
I L +L + +D L+ + +++ Y R + + S FR
Sbjct: 101 -------IHALAAKLLQENDTTLVKTKELIKN---YITARIMAKRPFDKKSNSALFRAVG 150
Query: 209 ---------F------EDFCAVLNFEEQSNL----------LVEIHVSLLKTIFREEDTQ 243
F +D+ FEE +L L++ L + R
Sbjct: 151 EGNAQLVAIFGGQGNTDDY-----FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 244 QTHFGP-------LDQKDSANSVLYFIDA-MTWP 269
+ F L+ + Y + ++ P
Sbjct: 206 EKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239
Score = 33.1 bits (75), Expect = 0.22
Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 45/158 (28%)
Query: 9 GRPPKTP-----NTERPKFQVHLLKKPQYLQNLEARGL---NSP----ITSRTSSPQGSE 56
G P +P N + + Q ++ K +L + + N ++ S G
Sbjct: 333 GVP--SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLN 390
Query: 57 TS-RRSTAKKGTKRKSNPPTRGGRGGNQKRKQTLETD-------YHYGSDF-EDSTDH-D 106
+ R++ A G + S P +RK +H S ++D +
Sbjct: 391 LTLRKAKAPSGLDQ-SRIPFS-------ERKLKFSNRFLPVASPFH--SHLLVPASDLIN 440
Query: 107 DDLGLSESETEPEKDDPLDEMSDSDLSLSSFSTTSGTN 144
DL + D+ + + T G++
Sbjct: 441 KDLVKNNVSFNA-----------KDIQIPVYDTFDGSD 467
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural
genomics, PHD domain, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.50.1.2 PDB: 1wes_A
Length = 71
Score = 38.4 bits (89), Expect = 2e-04
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 333 DDHCRVCHRV--GELLCCETCPAV---FHLECVDPPLRDVPQEDWQCNLCKA 379
+ +CH+V GE++ C+ FH CV L P+ W C C
Sbjct: 15 EPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 64
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein,
signal transduction, transcription, metal BI WNT
proteins; 1.90A {Homo sapiens}
Length = 105
Score = 39.5 bits (91), Expect = 2e-04
Identities = 15/68 (22%), Positives = 19/68 (27%), Gaps = 11/68 (16%)
Query: 336 CRVCHRVGE-----LLCCETCPAVFHLECV------DPPLRDVPQEDWQCNLCKAHKVTG 384
C C +LC +C FH EC L W C+LC K
Sbjct: 6 CGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEGS 65
Query: 385 VTDCLPDV 392
+
Sbjct: 66 GSGSGSQF 73
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD
domain, ING1-like protein, DNA binding protein, NPPSFA;
NMR {Mus musculus} SCOP: g.50.1.2
Length = 91
Score = 38.2 bits (88), Expect = 4e-04
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 333 DDHCRVCHRV--GELLCCET---CPAVFHLECVDPPLRDVPQEDWQCNLCKA 379
+ +CH+V GE++ C+ FH CV L P+ W C C
Sbjct: 35 EPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 84
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain,
leukemia, apoptosis, chromati regulator, DNA-binding,
isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A*
3lqj_A* 2kyu_A
Length = 183
Score = 39.2 bits (90), Expect = 0.001
Identities = 12/103 (11%), Positives = 25/103 (24%), Gaps = 14/103 (13%)
Query: 334 DHCRVCHRV-------GELLCCETCPAVFHLECVDPPLRDVPQ-------EDWQCNLCKA 379
+ C +C + +++ C C H +C + + C C
Sbjct: 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTE 62
Query: 380 HKVTGVTDCLPDVEKSGLLCRQEHLGFDRAGRKYWFLSRRIFM 422
L + L L R ++ +
Sbjct: 63 RHPAEWRLALEKELQISLKQVLTALLNSRTTSHLLRYRQQQPL 105
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain,
nuclear protein, structural structural genomics
consortium, SGC, protein binding; HET: M3L; 1.67A {Homo
sapiens}
Length = 52
Score = 35.0 bits (81), Expect = 0.002
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 335 HCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCK 378
C ++ C C HL C +VP E + C C+
Sbjct: 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCR 50
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast,
protein binding; NMR {Saccharomyces cerevisiae} PDB:
2jmj_A*
Length = 90
Score = 35.9 bits (82), Expect = 0.003
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 317 TSPVREDLIHEGGFQYDDHCRVCHRV--GELLCC--ETCP-AVFHLECVDPPLRDVPQED 371
+ + + + EG ++ C V G ++ C CP FH CV L+ P+
Sbjct: 9 SEFINQGDVTEGNNNQEEVYCFCRNVSYGPMVACDNPACPFEWFHYGCVG--LKQAPKGK 66
Query: 372 WQCNLC 377
W C+
Sbjct: 67 WYCSKD 72
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.003
Identities = 52/285 (18%), Positives = 99/285 (34%), Gaps = 66/285 (23%)
Query: 169 LELPRSS------DDLLIPREYVMQTLSIYEVL---------RHFKSLIR------LSPF 207
++P+S D +++ ++ V TL ++ L + + ++R +SP
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98
Query: 208 RFEDFCAVLN---FEEQSNLLVEIHVSLLK-TIFREEDTQQTHFGPLDQKDSANSVLYFI 263
+ E + + EQ + L + K + R + + L+ + + N ++
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-- 156
Query: 264 DAM-----TW--PEALRSYIESDKTFDEEV--LNILNTCEYPFTNIEKRLRVLQFLTDQI 314
+ TW + SY + D ++ LN+ N C P E L +LQ L QI
Sbjct: 157 -GVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKN-CNSP----ETVLEMLQKLLYQI 209
Query: 315 LITSPVREDLIHEGGFQYDDHCRVCHRVGELLCCETCPAVFHLEC--VDPPLRDVPQEDW 372
R D + + + LL + + C V L +V ++
Sbjct: 210 DPNWTSRSDHSSNIKLRIHS---IQAELRRLLKSKP-----YENCLLV---LLNV--QNA 256
Query: 373 QC----NL-CKAHKVT---GVTDCLPDVEKSGLLCRQEHLGFDRA 409
+ NL CK T VTD L + + +
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Score = 39.1 bits (90), Expect = 0.003
Identities = 45/322 (13%), Positives = 86/322 (26%), Gaps = 111/322 (34%)
Query: 106 DDDLGLSESETE---------PEKDDPLDEMSDSDLSLSSF--STTSGTN---------- 144
+ L+ E + +D P + ++ + LS S G
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352
Query: 145 KKFSYISRMS-------------------PE----P------LWLQTERQIQPLELPRSS 175
K + I S P P +W + + + +
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 176 DDLLIPREYVMQTLSIYEVLRHFKSLIRLSPFRFEDFCAVLNFEEQSNLLVEIHVSLLKT 235
L+ ++ T+SI + K + +H S++
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELK--------------------VKLENEYALHRSIVDH 452
Query: 236 IFREEDTQQTHFGP-------------------LDQKDSANSVLYFIDAMTWPEALRSYI 276
+ P ++ + +++ D + L I
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-D-FRF---LEQKI 507
Query: 277 ESDKTFDEEVLNILNTC-------EYPFTNIEKRLR----VLQFL--TDQILITSP---- 319
D T +ILNT Y N K R +L FL ++ LI S
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567
Query: 320 VREDLIHEGGFQYDDHCRVCHR 341
+R L+ E +++ + R
Sbjct: 568 LRIALMAEDEAIFEEAHKQVQR 589
Score = 29.8 bits (66), Expect = 2.0
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 94 HYGSDFEDSTDHDDDLG-LSESETEPEKDDPLDEMSDSDLSLSSFSTTSGTN---KKFSY 149
H + + S + L L + +DP E + + F N K++
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL--DFLPKIEENLICSKYTD 566
Query: 150 ISR---MSP-EPLWLQTERQIQ 167
+ R M+ E ++ + +Q+Q
Sbjct: 567 LLRIALMAEDEAIFEEAHKQVQ 588
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 72
Score = 34.8 bits (80), Expect = 0.004
Identities = 11/44 (25%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 336 CRVCHRVGEL-LCCETCPAVFHLECVDPPLRDVPQEDWQCNLCK 378
C GE L C+ C H C+ D + C C
Sbjct: 21 CGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCI 64
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC,
structural genom type zinc finger, protein binding, zinc
ION binding; 1.85A {Homo sapiens}
Length = 68
Score = 34.4 bits (79), Expect = 0.006
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 335 HCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHK 381
C ++ C C HL C +VP E + C C+ K
Sbjct: 23 FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVP-EVFVCQKCRDSK 68
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 64
Score = 34.0 bits (78), Expect = 0.007
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 5/59 (8%)
Query: 328 GGFQYDDHCRVCHRV----GELLCCETCPAVFHLECVDPPLRDVPQ-EDWQCNLCKAHK 381
G C C +CC+ C FH +CV + ++C C
Sbjct: 1 GSSGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification,
leukemia, alternative splicing, chromatin regulator,
developmental protein; NMR {Homo sapiens} PDB: 2kgi_A*
3gl6_A*
Length = 52
Score = 33.4 bits (76), Expect = 0.008
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 347 CCETCPAVFHLECVDPPLRDVPQEDWQCNLC 377
C C FH CV ED+ C C
Sbjct: 21 CDGGCDEWFHQVCVGVSPEMAENEDYICINC 51
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway,
WNT signaling complex, chromosomal rearrangement,
signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A
2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Length = 65
Score = 33.2 bits (75), Expect = 0.016
Identities = 13/55 (23%), Positives = 17/55 (30%), Gaps = 11/55 (20%)
Query: 336 CRVCHRVGE-----LLCCETCPAVFHLECVDPP------LRDVPQEDWQCNLCKA 379
C +C +LC +C FH C L W C+ C A
Sbjct: 11 CGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: g.50.1.1
Length = 134
Score = 33.8 bits (76), Expect = 0.032
Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 5/57 (8%)
Query: 326 HEGGFQYDDHCRVCHRVGELLC-----CETCPAVFHLECVDPPLRDVPQEDWQCNLC 377
+ C +C +L CE C +C + P W C +C
Sbjct: 48 KNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKIC 104
>1wem_A Death associated transcription factor 1; structural genomics, PHD
domain, death inducer- obliterator 1(DIO-1); NMR {Mus
musculus} SCOP: g.50.1.2
Length = 76
Score = 31.8 bits (72), Expect = 0.051
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 336 CRVCHRVGELLCCETCPAVFHLECV-----DPPLRDVPQEDWQCNLCKA 379
CR H ++CC+ C FH +CV L + ED+ C C
Sbjct: 21 CRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 34.3 bits (78), Expect = 0.052
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 322 EDLIHEGGFQYDDHCRVCHR-VGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKA 379
E I E C +CH + + CETC HL CV + + +C C
Sbjct: 169 EQYIRETYPDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQS--NAEPRCPHCND 225
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger,
histone-binding, NUC protein; HET: M3L; 1.78A {Homo
sapiens}
Length = 75
Score = 31.8 bits (72), Expect = 0.064
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 336 CRVCHRVGEL-LCCETCPAVFHLECVDPPLRDVPQED-WQCNLCKA 379
CR+ + V + C+ C FH CV + P D + C C+
Sbjct: 15 CRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK 60
>3hbw_A Fibroblast growth factor 13; beta-trefoil fold, alternative
splicing, polymorphism, hormone; 1.90A {Homo sapiens}
Length = 193
Score = 32.5 bits (73), Expect = 0.14
Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 1 MYGRIKRRGRPPKTPNTERPKFQVHLLKKPQYLQNL-EARGLNSPITSRTSSPQGSETSR 59
Y + + G K + ++ K H L KP + E + SR+ S +++
Sbjct: 117 WYLGLNKEGEIMKGNHVKKNKPAAHFLPKPLKVAMYKEPSLHDLTEFSRSGSGTPTKSRS 176
Query: 60 RSTAKKGTKRKSNPPT 75
S G K S+ +
Sbjct: 177 VSGVLNGGKSMSHNES 192
>1wep_A PHF8; structural genomics, PHD domain, riken structural
genomics/proteomics initiative, RSGI, DNA binding
protein; NMR {Mus musculus} SCOP: g.50.1.2
Length = 79
Score = 30.7 bits (69), Expect = 0.15
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 336 CRVCHRVGEL-LCCETCPAVFHLECVDPPLRDVPQED-WQCNLCKA 379
CR + V + C C FH CV + D + C C+A
Sbjct: 17 CRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEA 62
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP;
2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Length = 391
Score = 31.3 bits (72), Expect = 0.57
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 12/57 (21%)
Query: 278 SDKTFDEEVLNILNTCEYPFTNIEKRLRVLQFLTDQILIT-----SPVREDLIHEGG 329
S +TF E+ + + KRLR L FL + I + +EGG
Sbjct: 171 SLETFTN-------VTEFEYEILAKRLRELSFLDSGVSIRLRDKRDGKEDHFHYEGG 220
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex,
isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus}
SCOP: d.14.1.3 d.122.1.2
Length = 390
Score = 31.3 bits (72), Expect = 0.61
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 10/56 (17%)
Query: 281 TF--DEEVLNILNTCEYPFTNIEKRLRVLQFLTDQILIT-----SPVREDLIHEGG 329
TF D E I + + I RLR + +L + + E + +GG
Sbjct: 167 TFKPDPE---IFGNLRFDPSKIRARLREVAYLVAGLKLVFQDRQHGKEEVFLDKGG 219
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate
biosynthesis, structural GENO PSI-2, protein structure
initiative; 2.30A {Salmonella typhimurium}
Length = 330
Score = 31.0 bits (71), Expect = 0.68
Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 16/65 (24%)
Query: 315 LITSPVREDLIHEGGFQYDDH-------CRVCHRVGELLCCE---TCPAVFHLECVDPPL 364
+ T+P+ ++ +H G Y H +L + H+ L
Sbjct: 122 IATAPLNKEALHLAGHNYPGHTELLATLTHS-RDYAMVLYTDKLKVIHVSTHI-----AL 175
Query: 365 RDVPQ 369
R
Sbjct: 176 RKFLD 180
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold,
winged-helix-turn-helix, antiparallel-coiled-COI domain,
ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces
cerevisiae}
Length = 1108
Score = 31.3 bits (70), Expect = 0.73
Identities = 20/167 (11%), Positives = 55/167 (32%), Gaps = 9/167 (5%)
Query: 73 PPTRGGRGGNQKRKQTLETDYHYGSDFEDSTDHDDDLGLSESETEPEKDDPLDEMSDSDL 132
+ G + + T + E+ + ++ + + K D+ +
Sbjct: 54 TDSNGEKNADTNVGDTPDHTQDKKHGLEEEKEEHEENNSENKKIKSNKSKTEDKNKKVVV 113
Query: 133 SLSSFSTTSGTNKKFSYISRMSPEPLWLQTERQIQPLELPRSSD-DLLIPREYVMQTLSI 191
+ + S +++ ++ Q + L + +P Y ++
Sbjct: 114 PVLADSFEQEASREVDASKGLTNSET--LQVEQDGKVRLSHQVRHQVALPPNYDYTPIAE 171
Query: 192 YEVLRHFKSLIRLSPFRFEDF--CAVLNFEEQSNLLVEIHVSLLKTI 236
++ + ++ PF + F A+ + ++LV H S KT+
Sbjct: 172 HKRVNEARTY----PFTLDPFQDTAISCIDRGESVLVSAHTSAGKTV 214
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP
binding, structure-based drug antimicrobial, virtual
screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae
GA47373} PDB: 4em7_A*
Length = 226
Score = 30.2 bits (69), Expect = 0.94
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 281 TF--DEEVLNILNTCEYPFTNIEKRLRVLQFLTDQILIT-SPVREDLIHEGGFQYDD 334
TF D I +T ++ + I +RL FL + ++ + R D E F Y++
Sbjct: 175 TFMPDAT---IFSTTDFKYNTISERLNESAFLLKNVTLSLTDKRTDEAIE--FHYEN 226
>1ofw_A 9HCC, nine-heme cytochrome C; electron transport, multiheme
cytochrome C, electron transfer, electron transpor; HET:
HEC GOL; 1.5A {Desulfovibrio desulfuricans} SCOP:
a.138.1.1 PDB: 1ofy_A* 19hc_A* 1duw_A*
Length = 296
Score = 30.7 bits (67), Expect = 0.95
Identities = 15/85 (17%), Positives = 24/85 (28%), Gaps = 18/85 (21%)
Query: 318 SPVREDLIHEGGFQYDDHCRVCHRVGELLCCETC--------------PAVFHLECVDPP 363
PV + H + D+C CH G+ + C TC H +
Sbjct: 31 KPVVFN--HLIHEKKIDNCETCHHTGDPVSCSTCHTVEGKAEGNYITLDRAMHATNIAKR 88
Query: 364 LRDVPQEDWQCNLCKAHKVTGVTDC 388
+ C C + +C
Sbjct: 89 AKGNTPVS--CVSCHEQQTKERREC 111
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 28.3 bits (63), Expect = 1.2
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 9/55 (16%)
Query: 333 DDHCRVCHRVGE----LLC---CETCPAVFHLECVDPPLRDVPQEDWQCNLCKAH 380
D CR+CH G+ L+ C H C+ ++ + C LCK
Sbjct: 15 QDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS--SDTRCCELCKYE 67
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 27.9 bits (62), Expect = 1.5
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 8/53 (15%)
Query: 331 QYDDHCRVCHRVGE----LLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKA 379
Q D C C + ++ C FH C+ ++ +C LC+
Sbjct: 24 QVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN----RCPLCQQ 72
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics,
ZF-HIT domain, DEAD box polypeptide 59 isoform 2,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 60
Score = 27.0 bits (59), Expect = 1.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 336 CRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQED 371
C VC R GE +C +T V LEC L V +++
Sbjct: 22 CVVCGRYGEYICDKTDEDVCSLECKAKHLLQVKEKE 57
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 27.6 bits (61), Expect = 2.0
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 336 CRVCHRVGEL-LCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKA 379
C +CH + CETC HL CV + + +C C
Sbjct: 18 CNICHSLLIQGQSCETCGIRMHLPCVAKYFQS--NAEPRCPHCND 60
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown
function, B-subunit binding, isomerase,
nucleotide-binding, topoisomerase; HET: DNA; 1.95A
{Myxococcus xanthus}
Length = 369
Score = 29.4 bits (67), Expect = 2.1
Identities = 9/56 (16%), Positives = 15/56 (26%), Gaps = 10/56 (17%)
Query: 281 TF--DEEVLNILNTCEYPFTNIEKRLRVLQFLTDQILIT-----SPVREDLIHEGG 329
F D I + + +R L L + ++ R GG
Sbjct: 156 HFVPDAT---IFEVLAFDRARLSRRCNELAALAPGLRVSFADLQRGERTLWHLPGG 208
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial,
DNA gyrase B, GY isomerase-isomerase inhibitor complex;
HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A*
1kzn_A* 3g7e_A*
Length = 220
Score = 29.0 bits (66), Expect = 2.3
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 12/56 (21%)
Query: 278 SDKTFDEEVLNILNTCEYPFTNIEKRLRVLQFLTDQILIT-----SPVREDLIHEG 328
S +TF N E+ + + KRLR L FL + I + +EG
Sbjct: 172 SLETFT-------NVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHYEG 220
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding,
structure-based drug antimicrobial, isomerase-isomerase
inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus
aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Length = 198
Score = 29.0 bits (66), Expect = 2.4
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
Query: 291 NTCEYPFTNIEKRLRVLQFLTDQILIT-------SPVREDLIH-EGG 329
T Y + +++R+R L FL I IT VRED H EGG
Sbjct: 151 ETTVYNYETLQQRIRELAFLNKGIQITLRDERDEENVREDSYHYEGG 197
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 28.8 bits (65), Expect = 2.4
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 8/67 (11%)
Query: 254 DSANSVLYFIDAMTWPEALRSYIESDKT-FDEEVLNILNTCEYPFT-------NIEKRLR 305
+ + + +D PE ++ + + + D E L + P I+
Sbjct: 81 KNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQE 140
Query: 306 VLQFLTD 312
V+ FL +
Sbjct: 141 VINFLAE 147
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn
binding domain, metal zinc, zinc-finger, metal binding
protein; NMR {Homo sapiens}
Length = 69
Score = 26.6 bits (59), Expect = 3.7
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 333 DDHCRVC---HRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKA 379
++ C +C GE + C +FH CVD L + +C +C+
Sbjct: 14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLI----TNKKCPICRV 59
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural
genomics, PSI-2, protein struc initiative; NMR {Homo
sapiens}
Length = 91
Score = 26.9 bits (60), Expect = 4.1
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 6/49 (12%)
Query: 317 TSPVREDLIHEGGFQYDDHCRVC---HRVGELLCCETCPAVFHLECVDP 362
V ED G + C +C + G++ C FH CV
Sbjct: 27 EILVTEDHGAVGQ---EMCCPICCSEYVKGDVATELPCHHYFHKPCVSI 72
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase
fold, transferase; 2.02A {Caenorhabditis elegans} SCOP:
d.144.1.8
Length = 429
Score = 28.8 bits (63), Expect = 4.1
Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 1/111 (0%)
Query: 155 PEPLWLQTERQIQPLE-LPRSSDDLLIPREYVMQTLSIYEVLRHFKSLIRLSPFRFEDFC 213
P+ L +R ++ L + +P E + +++ ++ R + L
Sbjct: 191 PDYLCEALQRWLKQLTGTVDAEHRFDLPEECGVSSVNCLDLARELEFLRAHISLSKSPVT 250
Query: 214 AVLNFEEQSNLLVEIHVSLLKTIFREEDTQQTHFGPLDQKDSANSVLYFID 264
N ++ N+L+ S + D Q L + A+ L ID
Sbjct: 251 FCHNDLQEGNILLPKASSGNIRMPSLSDETQALGNSLSAFNPADPRLVLID 301
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 26.3 bits (58), Expect = 4.6
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 7/50 (14%)
Query: 333 DDHCRVC---HRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKA 379
+ C VC + + L C FH +C+ L C LC
Sbjct: 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLE----VRKVCPLCNM 60
>2ect_A Ring finger protein 126; metal binding protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 78
Score = 26.2 bits (58), Expect = 5.1
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 333 DDHCRVC---HRVGELLCCETCPAVFHLECVDP 362
C VC + +GE + C +FH C+ P
Sbjct: 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVP 47
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with
ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3
d.122.1.2
Length = 390
Score = 28.2 bits (64), Expect = 5.6
Identities = 7/57 (12%), Positives = 18/57 (31%), Gaps = 13/57 (22%)
Query: 278 SDKTFDEEVLNILNTCEYPFTNIEKRLRVLQFLTDQILIT-----SPVREDLIHEGG 329
+ FD + + + + L+ L + IT + + ++ G
Sbjct: 170 DETFFD--------SPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDG 218
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding
domain, PDI-like protein, structural genomics; NMR
{Arabidopsis thaliana} SCOP: g.49.1.3
Length = 89
Score = 26.4 bits (58), Expect = 5.9
Identities = 6/43 (13%), Positives = 12/43 (27%), Gaps = 12/43 (27%)
Query: 348 CETCPAVFHLECVDPP------------LRDVPQEDWQCNLCK 378
+ A + D P L + + C+ C+
Sbjct: 12 LKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCE 54
>1nun_A Fibroblast growth factor-10; beta-trefoil fold, immunoglobulin-like
domain, hormone/growth factor/membrane protein complex;
HET: 15P; 2.90A {Homo sapiens} SCOP: b.42.1.1
Length = 145
Score = 27.3 bits (60), Expect = 6.3
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 1 MYGRIKRRGRPPKTPNTERPKFQVHLLKKP 30
MY + +G P + T R H L
Sbjct: 113 MYVALNGKGAPRRGQKTRRKNTSAHFLPMV 142
>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP,
cyclic nucleotide, regulation, auto-inhibition, CDC25
homology domain; 2.7A {Mus musculus}
Length = 999
Score = 27.9 bits (61), Expect = 8.1
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 13/72 (18%)
Query: 148 SYISRMSPEPLWLQTERQIQPLELPRSSDDLLIPREYVMQTLSIYEVLRHFKSLIRLSPF 207
++ + W+ + +PLE RSS+D+ I I+ L+ K+ + P
Sbjct: 10 AHAAHSQSSAEWIACLDK-RPLE--RSSEDVDI----------IFTRLKGVKAFEKFHPN 56
Query: 208 RFEDFCAVLNFE 219
C +E
Sbjct: 57 LLRQICLCGYYE 68
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI
topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB:
3lps_A*
Length = 408
Score = 27.5 bits (62), Expect = 8.2
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 13/57 (22%)
Query: 278 SDKTFDEEVLNILNTCEYPFTNIEKRLRVLQFLTDQILIT-----SPVREDLIHEGG 329
K FD T ++ + LR L + + + ++ E G
Sbjct: 189 DPKYFD--------TPKFNVRALRHLLRAKAVLCPGLTVKLHDEATGEQDSWYFENG 237
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.411
Gapped
Lambda K H
0.267 0.0814 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,289,082
Number of extensions: 364756
Number of successful extensions: 853
Number of sequences better than 10.0: 1
Number of HSP's gapped: 831
Number of HSP's successfully gapped: 106
Length of query: 422
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 326
Effective length of database: 4,021,377
Effective search space: 1310968902
Effective search space used: 1310968902
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.3 bits)