RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5116
(422 letters)
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 70
Score = 72.7 bits (178), Expect = 5e-17
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 333 DDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKVTGVTDCLPDV 392
CRVC + G+L+ C C FHL+C P L+DVP E+W C+LC H + + + D+
Sbjct: 7 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC--HVLPDLKEEDVDL 64
Query: 393 EKS 395
+
Sbjct: 65 QAC 67
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId:
9606]}
Length = 61
Score = 71.9 bits (176), Expect = 9e-17
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 331 QYDDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKVTG 384
+ + CRVC GELLCC+TCP+ +H+ C++PPL ++P +W C C + G
Sbjct: 7 HHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALKG 60
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription
factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 64.6 bits (157), Expect = 3e-14
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 336 CRVCHRVGE---LLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCK 378
C+VC + GE L+ C+ C FHL C+ P L +VP +WQC C+
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQ 48
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 72
Score = 55.8 bits (134), Expect = 5e-11
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Query: 336 CRVCHRVGE-LLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHK 381
C GE +L C+ C H C+ D + C C
Sbjct: 21 CGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 64
Score = 55.0 bits (132), Expect = 8e-11
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 5/54 (9%)
Query: 333 DDHCRVCHR----VGELLCCETCPAVFHLECVDPPLRDVPQ-EDWQCNLCKAHK 381
C C +CC+ C FH +CV + ++C C
Sbjct: 6 SGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKS 59
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 54.5 bits (130), Expect = 3e-10
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 9/73 (12%)
Query: 333 DDHCRVCHRV-----GELLCCETCPAVFHLECVDPPLRDVPQE----DWQCNLCKAHKVT 383
C VC ++ +L+ C+ C ++H +C P + D W C C
Sbjct: 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75
Query: 384 GVTDCLPDVEKSG 396
SG
Sbjct: 76 MAQKNQKSGPSSG 88
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 76
Score = 49.7 bits (118), Expect = 9e-09
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 336 CRVCHRVGELLCCETCPAVFHLECV-----DPPLRDVPQEDWQCNLCKAHK 381
CR H ++CC+ C FH +CV L + ED+ C C
Sbjct: 21 CRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 79
Score = 39.3 bits (91), Expect = 5e-05
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 336 CRVCHRV----GELLCCETCPAVFHLECVDPPLRDVPQED-WQCNLCKA 379
+C + ++ C C FH CV + D + C C+A
Sbjct: 14 YCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEA 62
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4
{Homo sapiens [TaxId: 9606]}
Length = 51
Score = 33.0 bits (75), Expect = 0.004
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Query: 335 HCRVCHRV--GELLCCET---CPAVFHLECVDPPLRDVPQEDWQCNLCK 378
+C +CH+V GE++ C+ FH CV L P+ W C C
Sbjct: 4 YC-LCHQVSYGEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCS 49
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 71
Score = 33.0 bits (75), Expect = 0.007
Identities = 13/48 (27%), Positives = 16/48 (33%), Gaps = 4/48 (8%)
Query: 336 CRVCHRVGELLC-CETCP-AVFHLECVDPPLRDVPQEDWQCNLCKAHK 381
C + C E CP FH CV P+ W C C+
Sbjct: 21 CNQVSYGEMIGCDNEQCPIEWFHFSCVSLT--YKPKGKWYCPKCRGDS 66
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 32.0 bits (72), Expect = 0.018
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 7/53 (13%)
Query: 336 CRVCHRVGELLCCE--TCPAVFHLECV---DPPLRDVPQ--EDWQCNLCKAHK 381
C ++ CE C H+ CV D P+ P E + C +C+
Sbjct: 21 CGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 29.1 bits (64), Expect = 0.13
Identities = 8/52 (15%), Positives = 12/52 (23%), Gaps = 7/52 (13%)
Query: 333 DDHCRVCHRVGE-----LLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKA 379
C +C+ C H C+ L C +C
Sbjct: 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRN--TACQICGV 55
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 89
Score = 28.0 bits (62), Expect = 0.69
Identities = 16/88 (18%), Positives = 26/88 (29%), Gaps = 20/88 (22%)
Query: 295 YPFTNIEKRLRVLQFLTDQILITSPVRED----------LIHEGGFQYDDHCRVCHRVGE 344
T E+RL+ ++ D+I P + L + C C G
Sbjct: 5 SSGT--EERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVY----TCDKCEEEGT 58
Query: 345 LLC--CETCPAVFHLECVDPP--LRDVP 368
+ C+ C H +C P
Sbjct: 59 IWSYHCDECDFDLHAKCALNEDTKESGP 86
>d1xlma_ c.1.15.3 (A:) D-xylose isomerase {Arthrobacter, strain
b3728 [TaxId: 1663]}
Length = 393
Score = 29.2 bits (65), Expect = 0.86
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 105 HDDDL---GLSESETEPEKDDPLDEMSDSDLSLSSFSTTSGTNKKFSYISRMSPEP 157
HD+DL +E+E E D + D+ L + +T ++ F S +
Sbjct: 52 HDNDLIPFDATEAEREKILGDFNQALKDTGLKVPMVTTNLFSHPVFKDGGFTSNDR 107
>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 26.5 bits (58), Expect = 1.1
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 335 HCRVCHRVG-ELLCCETCPAVFHLECVD 361
C +C + C+TC FH C
Sbjct: 16 FCDICQKFLLNGFRCQTCGYKFHEHCST 43
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 27.0 bits (59), Expect = 1.6
Identities = 8/55 (14%), Positives = 14/55 (25%), Gaps = 4/55 (7%)
Query: 325 IHEGGFQYDDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKA 379
I + + + + C FH C+ L+ C L
Sbjct: 31 IMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK----TRQVCPLDNR 81
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 26.0 bits (57), Expect = 1.6
Identities = 15/51 (29%), Positives = 16/51 (31%), Gaps = 8/51 (15%)
Query: 333 DDHCRVC----HRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKA 379
C VC E C FH ECVD L C LC+
Sbjct: 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG----SHSTCPLCRL 51
>d1kb0a1 a.3.1.6 (A:579-675) Quinoprotein alcohol dehydrogenase,
C-terminal domain {Comamonas testosteroni [TaxId: 285]}
Length = 97
Score = 26.8 bits (58), Expect = 2.2
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 311 TDQILITSPVREDLIHEGGFQYDDHCRVCHRVG 343
T Q+L + G Y +C CH V
Sbjct: 1 TGQLLQGVKYDPAKVEAGTMLYVANCVFCHGVP 33
>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans
[TaxId: 6239]}
Length = 395
Score = 27.9 bits (61), Expect = 2.5
Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 1/112 (0%)
Query: 154 SPEPLWLQTERQIQPLE-LPRSSDDLLIPREYVMQTLSIYEVLRHFKSLIRLSPFRFEDF 212
P+ L +R ++ L + +P E + +++ ++ R + L
Sbjct: 159 EPDYLCEALQRWLKQLTGTVDAEHRFDLPEECGVSSVNCLDLARELEFLRAHISLSKSPV 218
Query: 213 CAVLNFEEQSNLLVEIHVSLLKTIFREEDTQQTHFGPLDQKDSANSVLYFID 264
N ++ N+L+ S + D Q L + A+ L ID
Sbjct: 219 TFCHNDLQEGNILLPKASSGNIRMPSLSDETQALGNSLSAFNPADPRLVLID 270
>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 267
Score = 27.5 bits (60), Expect = 2.6
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Query: 323 DLIHEGGFQYDDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKV 382
+L+ G + C C V E CPA+ +P +D + C+
Sbjct: 118 NLLEIHGSLFKTRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGC 177
Query: 383 TGVTDCLPDV 392
G+ P V
Sbjct: 178 GGL--LRPHV 185
>d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus
[TaxId: 2261]}
Length = 66
Score = 25.5 bits (55), Expect = 3.3
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 7/48 (14%)
Query: 334 DHCRVCHRVGELLCCETCPAVFHLECVDP--PLRDVPQEDWQCNLCKA 379
D C +C CP VF + P +V +++ N K
Sbjct: 9 DTCIGDA-----ICASLCPDVFEMNDEGKAQPKVEVIEDEELYNCAKE 51
>d1e29a_ a.3.1.1 (A:) Photosystem II associated cytochrome c549
{Synechocystis sp., pcc 6803 [TaxId: 1143]}
Length = 135
Score = 26.8 bits (58), Expect = 3.4
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 317 TSPVREDLIHEGGFQYDDHCRVCHRVG 343
T+ + G + D C CH G
Sbjct: 18 TTTLTARQFTNGQKIFVDTCTQCHLQG 44
>d1bxba_ c.1.15.3 (A:) D-xylose isomerase {Thermus aquaticus, subsp.
Thermophilus [TaxId: 271]}
Length = 387
Score = 27.3 bits (60), Expect = 3.7
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 105 HDDDL---GLSESETEPEKDDPLDEMSDSDLSLSSFSTTSGTNKKFSYISRMSPEP 157
HD+DL G E + + ++ L + + ++ F + SP+P
Sbjct: 53 HDEDLIPRGTPPQERDQIVRRFKKALDETGLKVPMVTANLFSDPAFKDGAFTSPDP 108
>d1ihka_ b.42.1.1 (A:) Fibroblast growth factor 9, FGF9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 157
Score = 26.7 bits (59), Expect = 3.7
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 1 MYGRIKRRGRPPKTPNTERPKFQVHLLKKP 30
Y + + G P + T+R + H L +P
Sbjct: 111 YYVALNKDGTPREGTRTKRHQKFTHFLPRP 140
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 26.2 bits (57), Expect = 4.3
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Query: 334 DHCRVCHRVGELLC-----CETCPAVFHLECVDPPLRDVPQEDWQCNLCKAH 380
+ C +C +L CE C +C + P W C +C
Sbjct: 49 NRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 100
>d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2
{Yeast (Saccharomyces kluyveri) [TaxId: 4934]}
Length = 384
Score = 26.5 bits (57), Expect = 6.2
Identities = 11/75 (14%), Positives = 18/75 (24%)
Query: 326 HEGGFQYDDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDWQCNLCKAHKVTGV 385
H Q + + G + ETCP L + + ++
Sbjct: 199 HVSSPQAAEVIKQAQTKGLKVYAETCPQYALLSDAITRCHHHGEVESYGVGIDLSSISES 258
Query: 386 TDCLPDVEKSGLLCR 400
PD G
Sbjct: 259 PFTNPDDRFIGSKYI 273
>d1ofwa_ a.138.1.1 (A:) Nine-heme cytochrome c {Desulfovibrio
desulfuricans, ATCC 27774 [TaxId: 876]}
Length = 293
Score = 26.4 bits (56), Expect = 6.5
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 326 HEGGFQYDDHCRVCHRVGELLCCETC 351
H + D+C CH G+ + C TC
Sbjct: 37 HLIHEKKIDNCETCHHTGDPVSCSTC 62
>d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 49
Score = 24.0 bits (52), Expect = 6.6
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 335 HCRVCHR-VGELLCCETCPAVFHLECVD--PPLR 365
C VC + + + C+ C H +C P R
Sbjct: 16 VCNVCQKSMIFGVKCKHCRLKCHNKCTKEAPACR 49
>d1q1ua_ b.42.1.1 (A:) Fibrobast growth factor homologous factor 1
(FHF1b, FGF12b) {Human (Homo sapiens) [TaxId: 9606]}
Length = 138
Score = 25.5 bits (56), Expect = 6.9
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 1 MYGRIKRRGRPPKTPNTERPKFQVHLLKKP 30
+ + + G+ K ++ K H + KP
Sbjct: 106 WFLGLNKEGQIMKGNRVKKTKPSSHFVPKP 135
>d1rg8a_ b.42.1.1 (A:) Acidic FGF (FGF1) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 141
Score = 25.6 bits (56), Expect = 7.5
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 1 MYGRIKRRGRPPKTPNTERPKFQVHLLKKP 30
+ +K+ G + P T + + L P
Sbjct: 111 WFVGLKKNGSCKRGPRTHYGQKAILFLPLP 140
>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 53
Score = 23.9 bits (52), Expect = 7.9
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 9/42 (21%)
Query: 348 CETCPAVFHLECVDP--------PLRDVPQEDWQCNLCKAHK 381
C+ C ++ + DP ++P +DW C +C A K
Sbjct: 5 CKICGYIYDEDAGDPDNGISPGTKFEELP-DDWVCPICGAPK 45
>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId:
1501]}
Length = 53
Score = 23.9 bits (52), Expect = 9.1
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 9/42 (21%)
Query: 348 CETCPAVFHLECVDP--------PLRDVPQEDWQCNLCKAHK 381
C C +++ E DP +D+P +DW C LC K
Sbjct: 6 CTVCGYIYNPEDGDPDNGVNPGTDFKDIP-DDWVCPLCGVGK 46
>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 24.2 bits (52), Expect = 9.1
Identities = 6/31 (19%), Positives = 10/31 (32%), Gaps = 5/31 (16%)
Query: 336 CRVCHR-----VGELLCCETCPAVFHLECVD 361
C C + + + C C H +C
Sbjct: 18 CEYCANFMWGLIAQGVRCSDCGLNVHKQCSK 48
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 25.0 bits (53), Expect = 9.2
Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 319 PVREDLIHEGGFQYDDHCRVCHRVGELLCCETCPAVFHLECVDPPLRDVPQEDW-QCNLC 377
+ + + D + C FHL C+ + ++ QC C
Sbjct: 29 IICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSC 88
Query: 378 KA 379
K
Sbjct: 89 KT 90
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.411
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,563,726
Number of extensions: 74172
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 51
Length of query: 422
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 334
Effective length of database: 1,199,356
Effective search space: 400584904
Effective search space used: 400584904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.1 bits)