BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5120
(138 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9W0T1|NU301_DROME Nucleosome-remodeling factor subunit NURF301 OS=Drosophila
melanogaster GN=E(bx) PE=1 SV=2
Length = 2669
Score = 149 bits (375), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 93/129 (72%)
Query: 9 MTTGFKSYLNQYSTNQIALNKTQRNEERDKKRHMSHKFSLTPTGEFKWAGPVHGPRNVLV 68
M GFK+Y+NQYSTN IALNK QRNEERDK+RH+SHKFSLT +FKW G G + ++
Sbjct: 557 MEQGFKNYVNQYSTNPIALNKPQRNEERDKRRHLSHKFSLTTASDFKWIGITMGTTDNMI 616
Query: 69 NTLRATLLQLESSIIPAFMHVNWPSLRKPWISAVNTSVKARDFARAMIVLQACIKPVVFA 128
TLR TL+ ES+I +F+++NW +K W +AV + + +FA +++ QA +K VVFA
Sbjct: 617 TTLRQTLINFESNIAASFLNINWVVNKKIWNAAVMNARRPSEFAVVLLLFQASLKSVVFA 676
Query: 129 SVWHEQLVH 137
+VWHEQL H
Sbjct: 677 NVWHEQLGH 685
>sp|Q12830|BPTF_HUMAN Nucleosome-remodeling factor subunit BPTF OS=Homo sapiens GN=BPTF
PE=1 SV=3
Length = 3046
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 85/125 (68%)
Query: 13 FKSYLNQYSTNQIALNKTQRNEERDKKRHMSHKFSLTPTGEFKWAGPVHGPRNVLVNTLR 72
++ Y NQYSTN ALNK Q E+ DK+RH++HKF LTP GEFKW G VHG + + ++TLR
Sbjct: 848 YRVYHNQYSTNSFALNKHQHREDHDKRRHLAHKFCLTPAGEFKWNGSVHGSKVLTISTLR 907
Query: 73 ATLLQLESSIIPAFMHVNWPSLRKPWISAVNTSVKARDFARAMIVLQACIKPVVFASVWH 132
T+ QLE++I +F+H NW S R WI AV K R+FA A+ +L+ +KPVV +W
Sbjct: 908 LTITQLENNIPSSFLHPNWASHRANWIKAVQMCSKPREFALALAILECAVKPVVMLPIWR 967
Query: 133 EQLVH 137
E L H
Sbjct: 968 ESLGH 972
>sp|Q6BER5|NU301_CAEEL Nucleosome-remodeling factor subunit NURF301-like OS=Caenorhabditis
elegans GN=nurf-1 PE=1 SV=2
Length = 2194
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 13 FKSYLNQYSTNQIALNKTQRNEERDKKRHMSHKFSLTPTGEFKWA----GPVHGPRNVLV 68
F +Y N YS N+++ + R + DKK++M+ KF+ F W +G ++
Sbjct: 623 FMTYYNYYSRNEMSESFLTRKKAADKKKYMASKFAQ--IDNFDWVVAKNRQFYGDASLHC 680
Query: 69 NTLRATLLQLESSIIPAFMHVNWPSLRKPWISAVNTSVKARDFARAMIVLQACIKPVVFA 128
+ TL Q+ +I MH WP K + V+ + + ++ L ++ +F
Sbjct: 681 KFIMWTLQQVIKNIPIDLMHRKWPEFAKGFDLEVSVADDYKKLVTCLLKLDCAVRKTIFM 740
Query: 129 SVW 131
W
Sbjct: 741 PQW 743
>sp|B2HIL7|MSL7_MYCMM Phenolphthiocerol synthesis polyketide synthase type I Pks15/1
OS=Mycobacterium marinum (strain ATCC BAA-535 / M)
GN=pks15/1 PE=1 SV=1
Length = 2104
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 50 PTGEFKWAGPV-----HGPRNVLVNTLRATLLQLESSIIPAFMHVNWPSLRKPWIS-AVN 103
PT + W G + H V + + + ++PA +HV+ PS R W S AV+
Sbjct: 370 PTDQPLWVGSIKSNMGHTQAAAGVAGVIKMVQAMRHGLMPASLHVDEPSKRVDWESGAVS 429
Query: 104 TSVKARDFARA 114
+ARD+ A
Sbjct: 430 VLAEARDWPDA 440
>sp|P73689|SPPA_SYNY3 Protease 4 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sppA
PE=3 SV=1
Length = 610
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 62 GPRNVLVNTLRATLLQLESSIIPAFMHVNWPSLRKPW 98
G ++L N L L + S ++P F+ NW L + W
Sbjct: 549 GLNSLLWNNLIHGLTETNSVVLPPFLRTNWQQLEREW 585
>sp|Q6CMN5|PAN2_KLULA PAB-dependent poly(A)-specific ribonuclease subunit PAN2
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAN2 PE=3
SV=1
Length = 1144
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 9/44 (20%)
Query: 28 NKTQRNEERDKKRHMSH----KFSLTPTGEFKWAGPVHGPRNVL 67
++T N + R +SH K+SL P +FK+ GPRNV+
Sbjct: 408 SETDNNSTKSVNRSLSHLSSSKYSLQPYNKFKY-----GPRNVI 446
>sp|O14522|PTPRT_HUMAN Receptor-type tyrosine-protein phosphatase T OS=Homo sapiens
GN=PTPRT PE=1 SV=6
Length = 1441
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 55 KWAGPVHGPRNVLVNTLRATLLQLE 79
K A PVHGP+NV + +RA L L+
Sbjct: 382 KCADPVHGPQNVEIVDIRARQLTLQ 406
>sp|Q99M80|PTPRT_MOUSE Receptor-type tyrosine-protein phosphatase T OS=Mus musculus
GN=Ptprt PE=2 SV=2
Length = 1454
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 55 KWAGPVHGPRNVLVNTLRATLLQLE 79
K A PVHGP+NV + +RA L L+
Sbjct: 386 KCADPVHGPQNVEIVDIRARQLTLQ 410
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.130 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,478,063
Number of Sequences: 539616
Number of extensions: 1595867
Number of successful extensions: 3703
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3694
Number of HSP's gapped (non-prelim): 11
length of query: 138
length of database: 191,569,459
effective HSP length: 103
effective length of query: 35
effective length of database: 135,989,011
effective search space: 4759615385
effective search space used: 4759615385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)