Query psy5120
Match_columns 138
No_of_seqs 37 out of 39
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 17:52:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5120.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5120hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_E Cytochrome C oxidase po 34.1 9.2 0.00031 27.9 0.2 29 96-124 46-74 (109)
2 1om2_A Protein (mitochondrial 30.3 38 0.0013 23.8 2.9 36 92-130 37-72 (95)
3 3ax2_A Mitochondrial import re 29.5 30 0.001 23.2 2.1 38 90-130 32-69 (73)
4 2rdd_B UPF0092 membrane protei 23.9 36 0.0012 19.6 1.5 17 27-43 20-36 (37)
5 3rru_A TOM1L1 protein; structu 23.2 50 0.0017 24.4 2.5 25 101-125 61-85 (152)
6 1elk_A Target of MYB1; superhe 20.1 65 0.0022 23.5 2.6 24 102-125 62-85 (157)
7 2pyq_A Uncharacterized protein 19.4 48 0.0017 24.2 1.7 28 99-126 44-84 (114)
8 2y69_E Cytochrome C oxidase su 17.7 29 0.00098 26.6 0.2 30 96-125 89-118 (152)
9 2f40_A Hypothetical protein PF 16.0 33 0.0011 24.4 0.2 32 3-34 26-61 (96)
10 1mhq_A ADP-ribosylation factor 14.7 1E+02 0.0035 22.3 2.6 22 104-125 48-69 (148)
No 1
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=34.05 E-value=9.2 Score=27.92 Aligned_cols=29 Identities=24% Similarity=0.269 Sum_probs=23.9
Q ss_pred hhHHHHhhcccCHHHHHHHHHHHhhhhcc
Q psy5120 96 KPWISAVNTSVKARDFARAMIVLQACIKP 124 (138)
Q Consensus 96 k~W~~~V~~~~~~~~fA~aL~~le~~ir~ 124 (138)
+.=+.|+..|+...|||.|.-+||+.=-+
T Consensus 46 ~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 46 KIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34567899999999999999999986433
No 2
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=30.33 E-value=38 Score=23.78 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=28.3
Q ss_pred hhhhhhHHHHhhcccCHHHHHHHHHHHhhhhcchhhhhh
Q psy5120 92 PSLRKPWISAVNTSVKARDFARAMIVLQACIKPVVFASV 130 (138)
Q Consensus 92 ~~~rk~W~~~V~~~~~~~~fA~aL~~le~~ir~vvf~~v 130 (138)
..--..+.+|+..|..|.+| |.+|+..+-|-||..+
T Consensus 37 e~av~Hf~nAl~Vc~qP~~L---L~i~q~TlP~~Vf~~L 72 (95)
T 1om2_A 37 EKGVDHLTNAIAVCGQPQQL---LQVLQQTLPPPVFQML 72 (95)
T ss_dssp HHHHHHHHHHHHHHSCHHHH---HHHHHHHSCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHH---HHHHHhhCCHHHHHHH
Confidence 33445588999999999765 7888999999888754
No 3
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=29.51 E-value=30 Score=23.15 Aligned_cols=38 Identities=18% Similarity=0.314 Sum_probs=29.5
Q ss_pred CchhhhhhHHHHhhcccCHHHHHHHHHHHhhhhcchhhhhh
Q psy5120 90 NWPSLRKPWISAVNTSVKARDFARAMIVLQACIKPVVFASV 130 (138)
Q Consensus 90 nW~~~rk~W~~~V~~~~~~~~fA~aL~~le~~ir~vvf~~v 130 (138)
+...=-..+.+|+..|..|.+| |.+++..+-|-||..+
T Consensus 32 ~~~~~~~hf~nAl~Vc~qP~~L---L~i~q~tlP~~vf~~L 69 (73)
T 3ax2_A 32 DYEKGVDHLTNAIAVCGQPQQL---LQVLQQTLPPPVFQML 69 (73)
T ss_dssp CHHHHHHHHHHHHHTCSSCHHH---HHHHHHHSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHH---HHHHHhhCCHHHHHHH
Confidence 3444555688999999999775 7888989888888754
No 4
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=23.87 E-value=36 Score=19.56 Aligned_cols=17 Identities=18% Similarity=0.446 Sum_probs=13.6
Q ss_pred hChhhhhHHHhHhhhhc
Q psy5120 27 LNKTQRNEERDKKRHMS 43 (138)
Q Consensus 27 lnk~qr~eerDkkr~ls 43 (138)
+-+||++++++.+.-++
T Consensus 20 ~iRPQ~Kr~K~~~~m~~ 36 (37)
T 2rdd_B 20 ILRPQQKRTKEHKKLMD 36 (37)
T ss_dssp THHHHHHHHHHHTTGGG
T ss_pred HhhhHHHHHHHHHHHHh
Confidence 45799999999887764
No 5
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=23.21 E-value=50 Score=24.37 Aligned_cols=25 Identities=4% Similarity=0.386 Sum_probs=19.2
Q ss_pred HhhcccCHHHHHHHHHHHhhhhcch
Q psy5120 101 AVNTSVKARDFARAMIVLQACIKPV 125 (138)
Q Consensus 101 ~V~~~~~~~~fA~aL~~le~~ir~v 125 (138)
.++...++++--+||.+||+|++.+
T Consensus 61 Rl~~~~n~~~~l~AL~LLe~cvkNC 85 (152)
T 3rru_A 61 RISKNYNHKEIQLTLSLIDMCVQNC 85 (152)
T ss_dssp HHTTCCBHHHHHHHHHHHHHHHHHS
T ss_pred HHcCCCChHHHHHHHHHHHHHHHhc
Confidence 3554567887778999999999864
No 6
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=20.08 E-value=65 Score=23.53 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=19.9
Q ss_pred hhcccCHHHHHHHHHHHhhhhcch
Q psy5120 102 VNTSVKARDFARAMIVLQACIKPV 125 (138)
Q Consensus 102 V~~~~~~~~fA~aL~~le~~ir~v 125 (138)
++...+|+.--.||.+||+|++.+
T Consensus 62 l~~~~n~~v~l~AL~LLd~~vkNc 85 (157)
T 1elk_A 62 IVGNKNFHEVMLALTVLETCVKNC 85 (157)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHS
T ss_pred hccCCCHHHHHHHHHHHHHHHHHh
Confidence 555678888889999999999875
No 7
>2pyq_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.50A {Jannaschia SP} SCOP: a.279.1.1
Probab=19.40 E-value=48 Score=24.22 Aligned_cols=28 Identities=11% Similarity=0.112 Sum_probs=21.4
Q ss_pred HHHhhcccCHHHHHHHH-------------HHHhhhhcchh
Q psy5120 99 ISAVNTSVKARDFARAM-------------IVLQACIKPVV 126 (138)
Q Consensus 99 ~~~V~~~~~~~~fA~aL-------------~~le~~ir~vv 126 (138)
+.+...|++|+||+++= .-|+++|..||
T Consensus 44 Das~Vs~SD~~ELerVk~nfl~KKLGl~d~~~ld~aI~~V~ 84 (114)
T 2pyq_A 44 DASTVAGSDTAELETIKKNFLMKKLGLADSESLMGGIQSVI 84 (114)
T ss_dssp HHHBCCTTCHHHHHHHHHHTTTTTSCCCSSHHHHHHHHHHH
T ss_pred chhhhccCCHHHHHHHHHhHHHHHcCCCCcHhHHHHHHHHH
Confidence 56788999999999982 24677777765
No 8
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=17.68 E-value=29 Score=26.62 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=24.0
Q ss_pred hhHHHHhhcccCHHHHHHHHHHHhhhhcch
Q psy5120 96 KPWISAVNTSVKARDFARAMIVLQACIKPV 125 (138)
Q Consensus 96 k~W~~~V~~~~~~~~fA~aL~~le~~ir~v 125 (138)
+.=+.++..|+...|||.|.-+||+.=-++
T Consensus 89 ~Ii~AALrAcRRvNDfalAVR~lE~vK~K~ 118 (152)
T 2y69_E 89 KIIDAALRACRRLNDFASAVRILEVVKDKA 118 (152)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 345678899999999999999999764333
No 9
>2f40_A Hypothetical protein PF1455; protein structure prediction, residual dipolar couplings, PY furious, simulated annealing, structural genomics; NMR {Pyrococcus furiosus} SCOP: i.11.1.1
Probab=16.00 E-value=33 Score=24.38 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=23.2
Q ss_pred cccccc-ccCCceeeeeccchhhhh---hChhhhhH
Q psy5120 3 LQSAFL-MTTGFKSYLNQYSTNQIA---LNKTQRNE 34 (138)
Q Consensus 3 ~~frlG-~e~~fk~Y~NqYs~N~~A---lnk~qr~e 34 (138)
.+|+|. +|.-|+.+.|-|+.|-.. .+|..+.|
T Consensus 26 ~QYeL~k~~avyRvFiNgYAk~g~ViFDe~kl~~e~ 61 (96)
T 2f40_A 26 VQYELSTRDEFYRVFINPYAKVAEVVIDDSKVNIEE 61 (96)
T ss_dssp HHHTTTTTTTBCCCCCCTTTTCCEEECCBCSCSHHH
T ss_pred HHHHhhcchhhhhheeccccccceEEECcccCCHHH
Confidence 467777 589999999999999743 44444443
No 10
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=14.71 E-value=1e+02 Score=22.34 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=19.1
Q ss_pred cccCHHHHHHHHHHHhhhhcch
Q psy5120 104 TSVKARDFARAMIVLQACIKPV 125 (138)
Q Consensus 104 ~~~~~~~fA~aL~~le~~ir~v 125 (138)
...+|..--.||.+||+|++.+
T Consensus 48 ~~~n~~vql~AL~LLe~~vkNC 69 (148)
T 1mhq_A 48 QSPQEKEALYALTVLEMCMNHC 69 (148)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHHHHHHHHHc
Confidence 3678999999999999999875
Done!