Query psy5120
Match_columns 138
No_of_seqs 37 out of 39
Neff 4.1
Searched_HMMs 13730
Date Fri Aug 16 17:52:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5120.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5120hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54e_ a.118.11.1 (E:) Cytoch 38.5 3.3 0.00024 28.4 0.2 30 96-125 42-71 (105)
2 d1om2a_ a.23.4.1 (A:) Mitochon 38.1 11 0.0008 24.9 2.9 37 91-130 36-72 (95)
3 d1elka_ a.118.9.2 (A:) Tom1 pr 21.5 27 0.002 23.7 2.6 24 102-125 58-81 (153)
4 d5ruba1 c.1.14.1 (A:138-457) R 19.5 21 0.0016 27.5 1.8 41 94-136 273-319 (320)
5 d1ujka_ a.118.9.2 (A:) ADP-rib 18.0 36 0.0026 22.9 2.6 22 104-125 55-76 (145)
6 d2d6ya1 a.4.1.9 (A:7-74) Putat 17.8 55 0.004 18.7 3.1 26 60-85 42-68 (68)
7 d2qalc1 d.52.3.1 (C:1-105) Rib 14.5 14 0.001 24.4 -0.4 74 2-80 6-95 (105)
8 d2uubc1 d.52.3.1 (C:2-106) Rib 14.1 24 0.0018 23.0 0.7 72 2-78 6-93 (105)
9 d1juqa_ a.118.9.2 (A:) ADP-rib 13.5 43 0.0031 22.7 2.0 22 104-125 49-70 (151)
10 d1k32a4 c.14.1.2 (A:680-762,A: 13.4 48 0.0035 24.1 2.4 35 88-122 29-63 (291)
No 1
>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}
Probab=38.49 E-value=3.3 Score=28.36 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=24.6
Q ss_pred hhHHHHhhcccCHHHHHHHHHHHhhhhcch
Q psy5120 96 KPWISAVNTSVKARDFARAMIVLQACIKPV 125 (138)
Q Consensus 96 k~W~~~V~~~~~~~~fA~aL~~le~~ir~v 125 (138)
+.=+.|+..|+...|||.|.-+||++=-+|
T Consensus 42 ~Ii~aALrAcRRvND~alAVR~lE~vK~K~ 71 (105)
T d1v54e_ 42 KIIDAALRACRRLNDFASAVRILEVVKDKA 71 (105)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 344678999999999999999999865443
No 2
>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=38.14 E-value=11 Score=24.92 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=29.3
Q ss_pred chhhhhhHHHHhhcccCHHHHHHHHHHHhhhhcchhhhhh
Q psy5120 91 WPSLRKPWISAVNTSVKARDFARAMIVLQACIKPVVFASV 130 (138)
Q Consensus 91 W~~~rk~W~~~V~~~~~~~~fA~aL~~le~~ir~vvf~~v 130 (138)
...=...+.+||..|..|.+| |.+|+..+-|-||..+
T Consensus 36 ~~~g~~h~~nAi~Vc~qP~~L---L~ilq~tlP~~Vf~~L 72 (95)
T d1om2a_ 36 YEKGVDHLTNAIAVCGQPQQL---LQVLQQTLPPPVFQML 72 (95)
T ss_dssp HHHHHHHHHHHHHHHSCHHHH---HHHHHHHSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHH---HHHHHhhCCHHHHHHH
Confidence 344445688999999999875 7889999999998764
No 3
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.51 E-value=27 Score=23.74 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=20.0
Q ss_pred hhcccCHHHHHHHHHHHhhhhcch
Q psy5120 102 VNTSVKARDFARAMIVLQACIKPV 125 (138)
Q Consensus 102 V~~~~~~~~fA~aL~~le~~ir~v 125 (138)
++...+|+.--+||.+||+|++.+
T Consensus 58 L~~~~n~~v~l~aL~LLe~~vkNC 81 (153)
T d1elka_ 58 IVGNKNFHEVMLALTVLETCVKNC 81 (153)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHS
T ss_pred HccCCCHHHHHHHHHHHHHHHHHc
Confidence 555678888889999999999875
No 4
>d5ruba1 c.1.14.1 (A:138-457) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rhodospirillum rubrum [TaxId: 1085]}
Probab=19.48 E-value=21 Score=27.46 Aligned_cols=41 Identities=20% Similarity=0.365 Sum_probs=28.5
Q ss_pred hhhhHHHHhhc------ccCHHHHHHHHHHHhhhhcchhhhhhhhhhcC
Q psy5120 94 LRKPWISAVNT------SVKARDFARAMIVLQACIKPVVFASVWHEQLV 136 (138)
Q Consensus 94 ~rk~W~~~V~~------~~~~~~fA~aL~~le~~ir~vvf~~vW~e~LG 136 (138)
+|..|..+++- +.+-.||+.||..+--=.+- -.++|+|.||
T Consensus 273 ~rqA~eA~~~G~~l~e~Ak~~~EL~~Al~~wg~~~~~--~~~~~~~~~~ 319 (320)
T d5ruba1 273 LRQAWQAWRDGVPVLDYAREHKELARAFESFPGDADQ--IYPGWRKALG 319 (320)
T ss_dssp HHHHHHHHHHTCCHHHHHHTCHHHHHHHHHSHHHHHH--HSTTHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHhhCHHHHHHHHHhCHHHHH--HhhHHHHhhC
Confidence 77777655544 44556889999887654443 3589999998
No 5
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.03 E-value=36 Score=22.93 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.2
Q ss_pred cccCHHHHHHHHHHHhhhhcch
Q psy5120 104 TSVKARDFARAMIVLQACIKPV 125 (138)
Q Consensus 104 ~~~~~~~fA~aL~~le~~ir~v 125 (138)
...+|...-+||.+||+|++.+
T Consensus 55 ~~~~~~~~l~aL~LLe~~vkNC 76 (145)
T d1ujka_ 55 QSPQEWEAIQALTVLETCMKSC 76 (145)
T ss_dssp TCSSHHHHHHHHHHHHHHHTSC
T ss_pred cCCCHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999985
No 6
>d2d6ya1 a.4.1.9 (A:7-74) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]}
Probab=17.81 E-value=55 Score=18.71 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=20.1
Q ss_pred ccCchH-HHHHHHHHHHHHHHHhcCcc
Q psy5120 60 VHGPRN-VLVNTLRATLLQLESSIIPA 85 (138)
Q Consensus 60 ~~Gs~~-~~~~tlr~Ti~~le~~Ip~~ 85 (138)
.||++. +....+...+.++...+|.+
T Consensus 42 ~F~~K~~l~~~~~~~~~~~~~~~vP~D 68 (68)
T d2d6ya1 42 YYGNKGELFASVLEKKMLDLAISVPVD 68 (68)
T ss_dssp HHSSHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HCcCHHHHHHHHHHHHHHHHHhhCCCC
Confidence 468887 56667788899999999864
No 7
>d2qalc1 d.52.3.1 (C:1-105) Ribosomal protein S3 N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=14.49 E-value=14 Score=24.37 Aligned_cols=74 Identities=14% Similarity=0.226 Sum_probs=42.8
Q ss_pred CccccccccCCceeeeeccch-hhhhhChhhhhHHHhHhhhhcccccCCCCCcee--ec-------------ccccCchH
Q psy5120 2 PLQSAFLMTTGFKSYLNQYST-NQIALNKTQRNEERDKKRHMSHKFSLTPTGEFK--WA-------------GPVHGPRN 65 (138)
Q Consensus 2 ~~~frlG~e~~fk~Y~NqYs~-N~~Alnk~qr~eerDkkr~ls~KFslt~~~eFk--W~-------------g~~~Gs~~ 65 (138)
|++||||--+++.+ +.|+. ..+|.. -.|+--=+.|+..+|.-..-+..+ -. |-+.|.+.
T Consensus 6 P~GfRlGi~~~~~S--~Wfa~~~~Y~~~---l~eD~~IR~~i~k~~~~a~Is~IeIeR~~~~i~V~I~tarPGviIG~~G 80 (105)
T d2qalc1 6 PNGIRLGIVKPWNS--TWFANTKEFADN---LDSDFKVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKG 80 (105)
T ss_dssp HHHHTTTTTSCCSC--CCCCCHHHHHHH---HHHHHHHHHHHHHTTSTTCEEEEECCCCSSCBCCEEEESCHHHHHCTTS
T ss_pred CcceeecccCCCCC--EEcCCccchHHH---HHHHHHHHHHHHHHHHhcccceEEEEecCCcEEEEEEeCCCccEeccCc
Confidence 89999998886655 45542 223322 233333346676666544333322 22 24457777
Q ss_pred HHHHHHHHHHHHHHH
Q psy5120 66 VLVNTLRATLLQLES 80 (138)
Q Consensus 66 ~~~~tlr~Ti~~le~ 80 (138)
.-+..||.-|.++-.
T Consensus 81 ~~i~~L~~~l~k~~~ 95 (105)
T d2qalc1 81 EDVEKLRKVVADIAG 95 (105)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHhC
Confidence 778888887777643
No 8
>d2uubc1 d.52.3.1 (C:2-106) Ribosomal protein S3 N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=14.08 E-value=24 Score=22.98 Aligned_cols=72 Identities=18% Similarity=0.219 Sum_probs=42.0
Q ss_pred CccccccccCCceeeeeccc-hhhhhhChhhhhHHHhHhhhhcccccCCCCCceeec---------------ccccCchH
Q psy5120 2 PLQSAFLMTTGFKSYLNQYS-TNQIALNKTQRNEERDKKRHMSHKFSLTPTGEFKWA---------------GPVHGPRN 65 (138)
Q Consensus 2 ~~~frlG~e~~fk~Y~NqYs-~N~~Alnk~qr~eerDkkr~ls~KFslt~~~eFkW~---------------g~~~Gs~~ 65 (138)
|++||||--+++.+ +.|+ .+.+|.. -.|+--=+.|+..+|.-..-+..+=. |-+.|.+.
T Consensus 6 P~gfRlGi~k~w~S--~W~a~~~~y~~~---l~eD~~IR~~i~k~~~~agIs~IeIeR~~~~i~I~I~tarPG~iIGkkG 80 (105)
T d2uubc1 6 PIGFRLGITRDWES--RWYAGKKQYRHL---LLEDQRIRGLLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGG 80 (105)
T ss_dssp TTTTTTTTTSCCSC--BCCCCTTTTTHH---HHHHHHHHHHHHHSTTTTTEEEECCEESSSCEECCEEESCHHHHHCSTT
T ss_pred CcceeecccCCCCc--eEcCChhhhHHH---HHHHHHHHHHHHhhccccCcceEEEEEccCcEEEEEEECCCceEEcCCc
Confidence 99999998887765 3453 2333322 23444444566666654333332221 23457777
Q ss_pred HHHHHHHHHHHHH
Q psy5120 66 VLVNTLRATLLQL 78 (138)
Q Consensus 66 ~~~~tlr~Ti~~l 78 (138)
.-++.|+..|.++
T Consensus 81 ~~i~~L~~~l~k~ 93 (105)
T d2uubc1 81 ERIRVLREELAKL 93 (105)
T ss_dssp SHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 7788888888776
No 9
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.53 E-value=43 Score=22.67 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=18.4
Q ss_pred cccCHHHHHHHHHHHhhhhcch
Q psy5120 104 TSVKARDFARAMIVLQACIKPV 125 (138)
Q Consensus 104 ~~~~~~~fA~aL~~le~~ir~v 125 (138)
...+|.+--.||.+||+|++.+
T Consensus 49 ~~~~~~~~l~aL~LLe~~vkNC 70 (151)
T d1juqa_ 49 QSPQEWEALQALTVLEACMKNC 70 (151)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHHHHHHHHHc
Confidence 3567888888999999999975
No 10
>d1k32a4 c.14.1.2 (A:680-762,A:854-1061) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=13.37 E-value=48 Score=24.14 Aligned_cols=35 Identities=9% Similarity=0.063 Sum_probs=29.6
Q ss_pred CCCchhhhhhHHHHhhcccCHHHHHHHHHHHhhhh
Q psy5120 88 HVNWPSLRKPWISAVNTSVKARDFARAMIVLQACI 122 (138)
Q Consensus 88 H~nW~~~rk~W~~~V~~~~~~~~fA~aL~~le~~i 122 (138)
.-+|..++..+...|..+.+..+|..+|.-+-+-+
T Consensus 29 gvDW~~~~~~yr~~~~~~~~~~el~~~l~eml~~L 63 (291)
T d1k32a4 29 KEISERIYEKYRNLVPLCKTRYDLSNVIVEMQGEY 63 (291)
T ss_dssp HHHHHHHHHHHHTTGGGCCSHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHh
Confidence 45799999999999999999999999987665443
Done!