RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy5120
         (138 letters)



>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional.
          Length = 468

 Score = 27.3 bits (61), Expect = 2.9
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 12/48 (25%)

Query: 19  QY-STNQIALNKTQRNEERDKKRHMSHKFSLTPTGEFKWAGPVHGPRN 65
           Q+ +T  I+L KTQ  E           F  + + E    GPV  P N
Sbjct: 113 QFLATGLISLGKTQLPE-----------FGFSASTEHPRLGPVRNPWN 149


>gnl|CDD|237377 PRK13405, bchH, magnesium chelatase subunit H; Provisional.
          Length = 1209

 Score = 26.6 bits (59), Expect = 5.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 68  VNTLRATLLQLESSIIPAFMHV 89
           +  L A LL+LE ++IP  +HV
Sbjct: 726 IAKLWAALLELEYTLIPHGLHV 747


>gnl|CDD|145067 pfam01718, Orbi_NS1, Orbivirus non-structural protein NS1, or
           hydrophobic tubular protein.  This family consists of
           orbivirus non-structural protein NS1, or hydrophobic
           tubular protein. NS1 has no specific function in virus
           replication, it is however thought to play a role in
           transport of mature virus particles from virus inclusion
           bodies to the cell membrane. Orbivirus are part of the
           larger reoviridae which have a dsRNA genome of at least
           10 segments encoding at least 10 viral proteins;
           orbivirus found in this family include bluetongue virus,
           and African horsesickness virus.
          Length = 546

 Score = 25.8 bits (57), Expect = 8.6
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 6/51 (11%)

Query: 12  GFKSYLNQYSTNQIALNKTQRNEERDKKRHMSHKFSLTPTGEFKWAGPVHG 62
            F   L +Y+  Q+ L        R   R    +F +   GE     P+H 
Sbjct: 232 DFAKILLRYA--QMDLKFILSFGTRLPTRLCYQRFGIEGAGEG----PLHQ 276


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.130    0.403 

Gapped
Lambda     K      H
   0.267   0.0762    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,655,266
Number of extensions: 547472
Number of successful extensions: 441
Number of sequences better than 10.0: 1
Number of HSP's gapped: 441
Number of HSP's successfully gapped: 14
Length of query: 138
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 51
Effective length of database: 7,078,804
Effective search space: 361019004
Effective search space used: 361019004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.5 bits)