RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5120
         (138 letters)



>d1l6ja1 a.20.1.2 (A:29-105) Gelatinase B (MMP-9) {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 77

 Score = 27.1 bits (60), Expect = 0.25
 Identities = 9/41 (21%), Positives = 17/41 (41%)

Query: 14 KSYLNQYSTNQIALNKTQRNEERDKKRHMSHKFSLTPTGEF 54
          + YL +Y   ++A  + +          +  + SL  TGE 
Sbjct: 18 EEYLYRYGYTRVAEMRGESKSLGPALLLLQKQLSLPETGEL 58


>d1sh0a_ e.8.1.4 (A:) Viral RNA polymerase {Norwalk virus [TaxId:
           11983]}
          Length = 502

 Score = 25.7 bits (56), Expect = 2.5
 Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 17/93 (18%)

Query: 13  FKSYLNQYSTNQIALNKTQRNEERDKKRH----MSHKFSLTPTG------------EFKW 56
             + L +Y       +KT+      +  +    +    +  P G            +  W
Sbjct: 353 LTAKLKEYGLKPTRPDKTEGPLVISEDLNGLTFLRRTVTRDPAGWFGKLEQSSILRQMYW 412

Query: 57  A-GPVHGPRNVLVNTLRATLLQLESSIIPAFMH 88
             GP H   +  +       +QL S +  A +H
Sbjct: 413 TRGPNHEDPSETMIPHSQRPIQLMSLLGEAALH 445


>d1lp3a_ b.121.5.2 (A:) Dependovirus capsid protein
           {Adeno-associated virus, aav-2 [TaxId: 272636]}
          Length = 519

 Score = 24.1 bits (52), Expect = 8.4
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 10  TTGFKSYLNQYSTNQIALNKTQRNEERDKKRH 41
              F S++ QYST Q+++      ++ + KR 
Sbjct: 447 AAKFASFITQYSTGQVSVEIEWELQKENSKRW 478


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.130    0.403 

Gapped
Lambda     K      H
   0.267   0.0512    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 469,005
Number of extensions: 17844
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 6
Length of query: 138
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,364,116
Effective search space: 84575192
Effective search space used: 84575192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.8 bits)