BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5121
(204 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4D8O|A Chain A, Crystal Structure Of The Ankyrin-B Zu5-Zu5-Upa-Dd Tandem
Length = 581
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 62 ILDMPPPVEADPSRLTRILTMDFPHYFAVVSRVKQEVHAIGPEGGMXXXXXXXXXXXXXX 121
+LD P +E R+ RI+T DFP YFAVVSR+KQ+ + IGPEGG+
Sbjct: 149 VLDSPEDLEK--KRICRIITRDFPQYFAVVSRIKQDSNLIGPEGGVLSSTVVPQVQAVFP 206
Query: 122 XGALTKKIKVGLQVN 136
GALTK+I+VGLQ
Sbjct: 207 EGALTKRIRVGLQAQ 221
>pdb|3UD1|A Chain A, Crystal Structure Of Zu5a-Zu5b Domains Of Human
Erythrocyte Ankyrin
pdb|3UD1|B Chain B, Crystal Structure Of Zu5a-Zu5b Domains Of Human
Erythrocyte Ankyrin
pdb|3UD1|C Chain C, Crystal Structure Of Zu5a-Zu5b Domains Of Human
Erythrocyte Ankyrin
Length = 326
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 75 RLTRILTMDFPHYFAVVSRVKQEVHAIGPEGGMXXXXXXXXXXXXXXXGALTKKIKVGLQ 134
R+ RI+T DFP YF ++SR+ Q+ IGPEGG A+TK++K+ LQ
Sbjct: 143 RVCRIITTDFPLYFVIMSRLCQDYDIIGPEGGSLKSKLVPLVQATFPENAVTKRVKLALQ 202
Query: 135 VN 136
Sbjct: 203 AQ 204
>pdb|3UD2|C Chain C, Crystal Structure Of Selenomethionine Zu5a-Zu5b Protein
Domains Of Human Erythrocyte Ankyrin
pdb|3UD2|B Chain B, Crystal Structure Of Selenomethionine Zu5a-Zu5b Protein
Domains Of Human Erythrocyte Ankyrin
pdb|3UD2|A Chain A, Crystal Structure Of Selenomethionine Zu5a-Zu5b Protein
Domains Of Human Erythrocyte Ankyrin
Length = 326
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 75 RLTRILTMDFPHYFAVVSRVKQEVHAIGPEGGMXXXXXXXXXXXXXXXGALTKKIKVGLQ 134
R+ RI+T DFP YF + SR+ Q+ IGPEGG A+TK++K+ LQ
Sbjct: 143 RVCRIITTDFPLYFVIXSRLCQDYDIIGPEGGSLKSKLVPLVQATFPENAVTKRVKLALQ 202
Query: 135 VN 136
Sbjct: 203 AQ 204
>pdb|3NRO|A Chain A, Crystal Structure Of Putative Transcriptional Factor
Lmo1026 From Listeria Monocytogenes (Fragment 52-321),
Northeast Structural Genomics Consortium Target Lmr194
pdb|3NRO|B Chain B, Crystal Structure Of Putative Transcriptional Factor
Lmo1026 From Listeria Monocytogenes (Fragment 52-321),
Northeast Structural Genomics Consortium Target Lmr194
Length = 279
Score = 30.8 bits (68), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 143 NVPPAALKKITVNHIPKKKRFSLVWVGGGATVRSGEKSGKTDPV 186
NVP + K T++ + KKK FS++ G A R+GEK+G+ D +
Sbjct: 4 NVPLESSNK-TLSDLEKKKPFSVLLXGSDA--RAGEKNGRADTI 44
>pdb|3F59|A Chain A, Crystal Structure Of Zu5-Ank, The Spectrin Binding Region
Of Human Erythroid Ankyrin
pdb|3F59|B Chain B, Crystal Structure Of Zu5-Ank, The Spectrin Binding Region
Of Human Erythroid Ankyrin
pdb|3F59|C Chain C, Crystal Structure Of Zu5-Ank, The Spectrin Binding Region
Of Human Erythroid Ankyrin
pdb|3F59|D Chain D, Crystal Structure Of Zu5-Ank, The Spectrin Binding Region
Of Human Erythroid Ankyrin
pdb|3KBT|C Chain C, Crystal Structure Of The Ankyrin Binding Domain Of Human
Erythroid Beta Spectrin (Repeats 13-15) In Complex With
The Spectrin Binding Domain Of Human Erythroid Ankyrin
(Zu5-Ank)
pdb|3KBT|D Chain D, Crystal Structure Of The Ankyrin Binding Domain Of Human
Erythroid Beta Spectrin (Repeats 13-15) In Complex With
The Spectrin Binding Domain Of Human Erythroid Ankyrin
(Zu5-Ank)
pdb|3KBU|C Chain C, Crystal Structure Of The Ankyrin Binding Domain Of Human
Erythroid Beta Spectrin (Repeats 13-15) In Complex With
The Spectrin Binding Domain Of Human Erythroid Ankyrin
(Zu5-Ank), Emts Derivative
pdb|3KBU|D Chain D, Crystal Structure Of The Ankyrin Binding Domain Of Human
Erythroid Beta Spectrin (Repeats 13-15) In Complex With
The Spectrin Binding Domain Of Human Erythroid Ankyrin
(Zu5-Ank), Emts Derivative
Length = 161
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 75 RLTRILTMDFPHYFAVVSR 93
R+ RI+T DFP YF ++SR
Sbjct: 143 RVCRIITTDFPLYFVIMSR 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,922,893
Number of Sequences: 62578
Number of extensions: 215144
Number of successful extensions: 405
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 401
Number of HSP's gapped (non-prelim): 6
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)