Query psy5121
Match_columns 204
No_of_seqs 59 out of 61
Neff 2.0
Searched_HMMs 29240
Date Fri Aug 16 17:53:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5121.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5121hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ud1_A Ankyrin-1; beta sandwic 100.0 6.6E-38 2.3E-42 275.7 9.3 123 42-170 103-232 (326)
2 4d8o_A Ankyrin-2; ZU5, UPA, de 100.0 1.7E-35 5.7E-40 275.6 7.5 125 40-170 118-249 (581)
3 3f59_A Ankyrin-1; beta sandwic 99.5 1.6E-15 5.5E-20 123.9 1.0 51 43-93 104-161 (161)
4 3f59_A Ankyrin-1; beta sandwic 91.7 0.2 6.9E-06 40.9 4.7 38 98-135 9-46 (161)
5 4d8o_A Ankyrin-2; ZU5, UPA, de 86.8 0.79 2.7E-05 43.4 5.3 39 98-136 26-64 (581)
6 3ud1_A Ankyrin-1; beta sandwic 84.9 0.97 3.3E-05 40.1 4.7 40 98-137 9-48 (326)
7 2kxs_A Tight junction protein 72.7 11 0.00038 30.1 6.8 55 76-137 5-61 (146)
8 2kxr_A Tight junction protein 45.1 16 0.00055 27.9 3.1 38 98-136 7-46 (118)
9 2egv_A UPF0088 protein AQ_165; 32.6 13 0.00044 30.1 0.8 11 98-108 181-191 (229)
10 3g5b_A Netrin receptor UNC5B; 32.3 56 0.0019 29.4 5.0 62 98-168 6-70 (405)
11 1v6z_A Hypothetical protein TT 31.9 13 0.00046 30.0 0.8 11 98-108 177-187 (228)
12 1z85_A Hypothetical protein TM 29.0 16 0.00054 30.0 0.8 13 98-110 183-195 (234)
13 1vhy_A Hypothetical protein HI 29.0 16 0.00055 30.1 0.8 14 98-111 193-206 (257)
14 1vhk_A Hypothetical protein YQ 27.2 18 0.00061 30.0 0.8 13 98-110 202-214 (268)
15 3kw2_A Probable R-RNA methyltr 27.1 18 0.00062 30.0 0.8 11 98-108 194-204 (257)
16 4e8b_A Ribosomal RNA small sub 27.0 18 0.00062 29.6 0.8 11 98-108 190-200 (251)
17 3eyk_A Hemagglutinin HA1 chain 24.1 13 0.00045 33.2 -0.6 27 23-61 79-105 (323)
No 1
>3ud1_A Ankyrin-1; beta sandwich, ZU5, adapter protein, spectrin binding, cytos protein binding; 2.00A {Homo sapiens} PDB: 3ud2_C
Probab=100.00 E-value=6.6e-38 Score=275.73 Aligned_cols=123 Identities=33% Similarity=0.475 Sum_probs=110.9
Q ss_pred eEeeeccccc-----ChhhhhhhcC--CCCCCCCCcCCCCceEEEEcCCCCceeEEEeeeeeeeeeecCCCceEEeeeec
Q psy5121 42 VSVDIDQWPV-----NYKGILSVLT--ILDMPPPVEADPSRLTRILTMDFPHYFAVVSRVKQEVHAIGPEGGMVSSSVVP 114 (204)
Q Consensus 42 ~~~~~~~Wp~-----~~e~il~~l~--~EeL~slEel~~kRI~RIiT~DFPqYFAVVSRIrQE~~~IGPEGG~lsSsvVP 114 (204)
.|-|-++|.+ +.|.+-..|+ +||++|+||++++|++||+|+|||+|||||||+|||++.||||||+++|+++|
T Consensus 103 rSd~G~~W~eh~~~~~~~~l~~~l~g~~~~~~sle~~~k~r~~ri~v~~fp~~FaVVSRl~qe~~~V~~eGg~l~Ss~~p 182 (326)
T 3ud1_A 103 RSENGSVWKEHRSRYGESYLDQILNGMDEELGSLEELEKKRVCRIITTDFPLYFVIMSRLCQDYDIIGPEGGSLKSKLVP 182 (326)
T ss_dssp EESSSSCCEECCCSSCGGGHHHHTTTCCCCCCCHHHHHC-CEEEEEEEECCSEEEEEEEECCCCEEECTTCEEEECSSCT
T ss_pred EecCCCcceecccccchhHHHhhhccccccccchhhhcCceEEEEEecCCCeEEEEEeeEEeeeeeECCCCceEeeccCC
Confidence 4557789996 3445555554 78999999999999999999999999999999999999999999999999999
Q ss_pred ceeEecCCCCceeeeEEEEEeeecCCCCCCChhhHhhhhccCCCcceeeEEEEecc
Q psy5121 115 QVQAVFPQGALTKKIKVGLQVNLFKPRKNVPPAALKKITVNHIPKKKRFSLVWVGG 170 (204)
Q Consensus 115 qVQA~FPeGALTKkIrVgLQaQPI~P~qpV~de~vrki~GN~a~~spivTlEpr~~ 170 (204)
+|||.|||||+||+++|+||||| |+++++++++||++++||+||+|||+-
T Consensus 183 ~Vq~~FP~ga~~k~~~V~lQvqp------V~~~~v~~l~g~~~s~SPivtlep~~~ 232 (326)
T 3ud1_A 183 LVQATFPENAVTKRVKLALQAQP------VPDELVTKLLGNQATFSPIVTVEPRRR 232 (326)
T ss_dssp TCEEEECTTSSSSCEEEEEEEEC------CCHHHHHHHHTTSCEECCEEEEESSSC
T ss_pred CeEEecCCccccCceEEEEEEEe------cCHHHHHHHhcCCCccCCeEEEecCCc
Confidence 99999999999999999999988 567999999999999999999999754
No 2
>4d8o_A Ankyrin-2; ZU5, UPA, death domain, supramodule, protein binding; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.7e-35 Score=275.62 Aligned_cols=125 Identities=44% Similarity=0.627 Sum_probs=107.9
Q ss_pred eeeEeeecccccC-----hhhhhhhcC--CCCCCCCCcCCCCceEEEEcCCCCceeEEEeeeeeeeeeecCCCceEEeee
Q psy5121 40 VNVSVDIDQWPVN-----YKGILSVLT--ILDMPPPVEADPSRLTRILTMDFPHYFAVVSRVKQEVHAIGPEGGMVSSSV 112 (204)
Q Consensus 40 ~~~~~~~~~Wp~~-----~e~il~~l~--~EeL~slEel~~kRI~RIiT~DFPqYFAVVSRIrQE~~~IGPEGG~lsSsv 112 (204)
|-.|-|-++|.+. .+.+...|+ +|+++++||++++||+||+|+|||+|||||||+|||++.||||||+|+|++
T Consensus 118 V~rsd~g~~W~e~~~~~~~~~~~~~l~g~~~~~~~~~e~~~~ri~ri~t~~fp~~FaVVSR~~qe~~~V~peGg~l~Ss~ 197 (581)
T 4d8o_A 118 VLRSENGDSWKEHFCDYTEDELNEILNGMDEVLDSPEDLEKKRICRIITRDFPQYFAVVSRIKQDSNLIGPEGGVLSSTV 197 (581)
T ss_dssp EEEESSSSCCEECCCCC----------CCSCCCCCHHHHHHHTEEEEEEEECCSEEEEEEEECEEEEEEBTTBEEEECSS
T ss_pred EEEcCCCCcchhcccccchhhhhhhhccccccccchhhhcceeEEEEEecCCCeEEEEEeeEeeecceeCCCCCeEEeec
Confidence 4456677899982 222333333 678999999999999999999999999999999999999999999999999
Q ss_pred ecceeEecCCCCceeeeEEEEEeeecCCCCCCChhhHhhhhccCCCcceeeEEEEecc
Q psy5121 113 VPQVQAVFPQGALTKKIKVGLQVNLFKPRKNVPPAALKKITVNHIPKKKRFSLVWVGG 170 (204)
Q Consensus 113 VPqVQA~FPeGALTKkIrVgLQaQPI~P~qpV~de~vrki~GN~a~~spivTlEpr~~ 170 (204)
+|+||++|||||+||+++|+||||| |+++++++++||++++|||||+||++-
T Consensus 198 ~p~V~~~fP~ga~~k~~~v~lqvqp------V~~~~v~~l~~~~~~~Spivt~ep~~~ 249 (581)
T 4d8o_A 198 VPQVQAVFPEGALTKRIRVGLQAQP------MHSELVKKILGNKATFSPIVTLEPRRR 249 (581)
T ss_dssp STTCEEEECTTSCSSCEEEEEEEEC------CCHHHHHHHHTTSEEECCEEEEESSSC
T ss_pred cCCeEEEeCCcccccceEEEEEEEe------cCHHHHHHhhcCCCccCceEEEecCcc
Confidence 9999999999999999999999988 567999999999999999999999753
No 3
>3f59_A Ankyrin-1; beta sandwich, ZU5, spectrin binding, alternative P usage, ANK repeat, cytoskeleton, disease mutation; 2.00A {Homo sapiens} PDB: 3kbt_C 3kbu_C
Probab=99.51 E-value=1.6e-15 Score=123.89 Aligned_cols=51 Identities=29% Similarity=0.462 Sum_probs=44.6
Q ss_pred Eeeeccccc-----ChhhhhhhcC--CCCCCCCCcCCCCceEEEEcCCCCceeEEEee
Q psy5121 43 SVDIDQWPV-----NYKGILSVLT--ILDMPPPVEADPSRLTRILTMDFPHYFAVVSR 93 (204)
Q Consensus 43 ~~~~~~Wp~-----~~e~il~~l~--~EeL~slEel~~kRI~RIiT~DFPqYFAVVSR 93 (204)
|-|=++|.+ +.+.+-++|+ +|+|+++|||+++|||||+|+|||||||||||
T Consensus 104 SdnG~sW~eh~~~~~~~~~~~~l~~~~~~l~~~e~l~~~ri~ri~t~d~p~yfavvsR 161 (161)
T 3f59_A 104 SENGSVWKEHRSRYGESYLDQILNGMDEELGSLEELEKKRVCRIITTDFPLYFVIMSR 161 (161)
T ss_dssp ESSSSCCEECCCSSCGGGHHHHHTTCSCCCCCHHHHHHHTEEEEEEEECCSEEEEEEC
T ss_pred CCCCCCcccccccccHHHHHHHHhcccccccCHhHhhcCeEEEEeCCCCcceeEEEeC
Confidence 456789987 5666666665 89999999999999999999999999999998
No 4
>3f59_A Ankyrin-1; beta sandwich, ZU5, spectrin binding, alternative P usage, ANK repeat, cytoskeleton, disease mutation; 2.00A {Homo sapiens} PDB: 3kbt_C 3kbu_C
Probab=91.74 E-value=0.2 Score=40.94 Aligned_cols=38 Identities=13% Similarity=0.272 Sum_probs=35.3
Q ss_pred eeeecCCCceEEeeeecceeEecCCCCceeeeEEEEEe
Q psy5121 98 VHAIGPEGGMVSSSVVPQVQAVFPQGALTKKIKVGLQV 135 (204)
Q Consensus 98 ~~~IGPEGG~lsSsvVPqVQA~FPeGALTKkIrVgLQa 135 (204)
+++|.++||.+.++--+-|+-.||+||.+..+++..+.
T Consensus 9 SFlVdarGg~~~~~r~~GvrliiPpga~~~ptrI~cRl 46 (161)
T 3f59_A 9 SFMVDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRL 46 (161)
T ss_dssp EEEECTTCEEEECTTCSSCEEEECTTSCSSCEEEEEEE
T ss_pred EEEEeCCCCEEEcccCCCEEEEECCCCCCCCcEEEEEE
Confidence 57899999999999999999999999999999998875
No 5
>4d8o_A Ankyrin-2; ZU5, UPA, death domain, supramodule, protein binding; 2.20A {Homo sapiens}
Probab=86.75 E-value=0.79 Score=43.39 Aligned_cols=39 Identities=13% Similarity=0.234 Sum_probs=35.6
Q ss_pred eeeecCCCceEEeeeecceeEecCCCCceeeeEEEEEee
Q psy5121 98 VHAIGPEGGMVSSSVVPQVQAVFPQGALTKKIKVGLQVN 136 (204)
Q Consensus 98 ~~~IGPEGG~lsSsvVPqVQA~FPeGALTKkIrVgLQaQ 136 (204)
+++|.+.||.+.+....-+.-.||+||.+..+++.-+.-
T Consensus 26 sF~Vda~Gg~~~g~~~~Gvrl~iPp~a~~~p~rI~crl~ 64 (581)
T 4d8o_A 26 SFMVDARGGAMRGCRHNGLRIIIPPRKCTAPTRVTCRLV 64 (581)
T ss_dssp EEEECTTCEEEECSSSTTCEEEECTTSCSSCEEEEEEEB
T ss_pred EEEEeCCCCeeeccccCCEEEEECCCccCCCceEEEEEE
Confidence 478999999999999999999999999999998888753
No 6
>3ud1_A Ankyrin-1; beta sandwich, ZU5, adapter protein, spectrin binding, cytos protein binding; 2.00A {Homo sapiens} PDB: 3ud2_C
Probab=84.86 E-value=0.97 Score=40.09 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=36.3
Q ss_pred eeeecCCCceEEeeeecceeEecCCCCceeeeEEEEEeee
Q psy5121 98 VHAIGPEGGMVSSSVVPQVQAVFPQGALTKKIKVGLQVNL 137 (204)
Q Consensus 98 ~~~IGPEGG~lsSsvVPqVQA~FPeGALTKkIrVgLQaQP 137 (204)
++++.+.||.+.+..-.-+.-.||+||.+..+++-.+..-
T Consensus 9 sF~VdarGg~~~~~~~~Gvrl~IPpgA~~~ptrI~crl~~ 48 (326)
T 3ud1_A 9 SFMVDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVK 48 (326)
T ss_dssp EEEECTTCEEEECCTTTCCEEEECTTSCSSCEEEEEEEEC
T ss_pred EEEEeCCCCEEecccCCCEEEEECCCCCCCCeEEEEEEec
Confidence 4789999999999999999999999999999999888643
No 7
>2kxs_A Tight junction protein ZO-1, linker, peptide of M enriched ZO-associated protein; beta-barrel, protein binding; NMR {Homo sapiens}
Probab=72.68 E-value=11 Score=30.10 Aligned_cols=55 Identities=22% Similarity=0.281 Sum_probs=43.0
Q ss_pred eEEEEcCCCCceeEEEeeeeeeeeeecCCCceEEeeeecceeEecCCCCceee--eEEEEEeee
Q psy5121 76 LTRILTMDFPHYFAVVSRVKQEVHAIGPEGGMVSSSVVPQVQAVFPQGALTKK--IKVGLQVNL 137 (204)
Q Consensus 76 I~RIiT~DFPqYFAVVSRIrQE~~~IGPEGG~lsSsvVPqVQA~FPeGALTKk--IrVgLQaQP 137 (204)
++--.+++|+..|+..+ .++|..||.|.-.- .-|.-..|+||+.+. ..+.|.+.-
T Consensus 5 ~~~~~~~~~~~~~~~a~------g~fd~~GG~L~l~~-sGVsL~IPpgAI~~g~~~eIyl~v~~ 61 (146)
T 2kxs_A 5 LEVLFQGPGSTVVATAR------GIFNSNGGVLSSIE-TGVSIIIPQGAIPEGVEQEIYFKVCR 61 (146)
T ss_dssp EEEEECCSCCCEEEEEE------EEECTTCEEEEETT-TTEEEEECTTSSCSSCCEEEEEEEEC
T ss_pred eEEEEeCCCCceEEEee------EEeeCCCCEEEcCC-CCEEEEECccccCCCCeEEEEEEEec
Confidence 44557889998876655 46899999998775 789999999999974 457777644
No 8
>2kxr_A Tight junction protein ZO-1; beta-barrel, protein binding; NMR {Homo sapiens}
Probab=45.09 E-value=16 Score=27.92 Aligned_cols=38 Identities=26% Similarity=0.462 Sum_probs=30.4
Q ss_pred eeeecCCCceEEeeeecceeEecCCCCceeee--EEEEEee
Q psy5121 98 VHAIGPEGGMVSSSVVPQVQAVFPQGALTKKI--KVGLQVN 136 (204)
Q Consensus 98 ~~~IGPEGG~lsSsvVPqVQA~FPeGALTKkI--rVgLQaQ 136 (204)
..++|..||.|.-.- .-|.-..|+||+.+.. .+.|.+.
T Consensus 7 ~g~~d~~GG~L~~~~-sGvsL~IPpgAi~~~~~~eiyl~v~ 46 (118)
T 2kxr_A 7 RGIFNSNGGVLSSIE-TGVSIIIPQGAIPEGVEQEIYFKVC 46 (118)
T ss_dssp EEEECTTCEEEECTT-TCCEEEECTTSSCTTCCEEEEEEEE
T ss_pred eeEecCCCCEEEcCC-CCeEEEECccccCCCCeEEEEEEEc
Confidence 356899999998776 7899999999998754 4777653
No 9
>2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification, PUA domain, M3U, SAM, structural genomics, NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A*
Probab=32.59 E-value=13 Score=30.13 Aligned_cols=11 Identities=45% Similarity=0.963 Sum_probs=8.7
Q ss_pred eeeecCCCceE
Q psy5121 98 VHAIGPEGGMV 108 (204)
Q Consensus 98 ~~~IGPEGG~l 108 (204)
.-+||||||--
T Consensus 181 ~l~IGPEGGfs 191 (229)
T 2egv_A 181 SVVVGPEGGFS 191 (229)
T ss_dssp EEEECCTTCCC
T ss_pred EEEEcCCCCCC
Confidence 46799999953
No 10
>3g5b_A Netrin receptor UNC5B; ZU5, death domain, UPA, apoptosis, developmental protein, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; 2.00A {Rattus norvegicus}
Probab=32.29 E-value=56 Score=29.36 Aligned_cols=62 Identities=15% Similarity=0.124 Sum_probs=40.4
Q ss_pred eeeecCCCceEEeeeecceeEecCCCCceee--eEEEEEeeecCCCCCCChhhH-hhhhccCCCcceeeEEEEe
Q psy5121 98 VHAIGPEGGMVSSSVVPQVQAVFPQGALTKK--IKVGLQVNLFKPRKNVPPAAL-KKITVNHIPKKKRFSLVWV 168 (204)
Q Consensus 98 ~~~IGPEGG~lsSsvVPqVQA~FPeGALTKk--IrVgLQaQPI~P~qpV~de~v-rki~GN~a~~spivTlEpr 168 (204)
..++|..||.|... -..|.-..|+||+.+. ..+.|.+.. ++.- -...+...--||+|+.-|.
T Consensus 6 ~g~f~~~GG~L~lp-~tGVsLlIP~GAi~~g~~~eiyl~v~~--------~~~~~p~l~~~etllSPvV~cGP~ 70 (405)
T 3g5b_A 6 SGTFGCLGGRLTIP-GTGVSLLVPNGAIPQGKFYDLYLRINK--------TESTLPLSEGSQTVLSPSVTCGPT 70 (405)
T ss_dssp EEEECTTCEEEEET-TTTEEEEECTTSSCTTCCEEEEEEECC--------GGGGGGGCSTTEEECSCCEEEECS
T ss_pred eEEEeCCCCEEEec-CCCeEEEECCCcCCCCCEEEEEEEEec--------ccCCCCCCCCCccccCceEEECCC
Confidence 35789999999853 2459999999999987 457777642 2221 1222334556777766553
No 11
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Probab=31.86 E-value=13 Score=30.00 Aligned_cols=11 Identities=55% Similarity=1.102 Sum_probs=8.7
Q ss_pred eeeecCCCceE
Q psy5121 98 VHAIGPEGGMV 108 (204)
Q Consensus 98 ~~~IGPEGG~l 108 (204)
.-+||||||--
T Consensus 177 ~l~IGPEGGfs 187 (228)
T 1v6z_A 177 ALAVGPEGGFA 187 (228)
T ss_dssp EEEECCTTCCC
T ss_pred EEEEcCCCCCC
Confidence 46799999953
No 12
>1z85_A Hypothetical protein TM1380; alpha/beta knot fold, structural genomics, joint center for structural genomics, JCSG; 2.12A {Thermotoga maritima}
Probab=29.01 E-value=16 Score=30.02 Aligned_cols=13 Identities=38% Similarity=0.849 Sum_probs=9.6
Q ss_pred eeeecCCCceEEe
Q psy5121 98 VHAIGPEGGMVSS 110 (204)
Q Consensus 98 ~~~IGPEGG~lsS 110 (204)
.-+||||||--..
T Consensus 183 ~l~IGPEGGfs~~ 195 (234)
T 1z85_A 183 TVVVGPEGGFSEK 195 (234)
T ss_dssp EEEECCTTCCCHH
T ss_pred EEEEcCCCCCCHH
Confidence 4679999996433
No 13
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A
Probab=28.98 E-value=16 Score=30.13 Aligned_cols=14 Identities=36% Similarity=0.620 Sum_probs=10.0
Q ss_pred eeeecCCCceEEee
Q psy5121 98 VHAIGPEGGMVSSS 111 (204)
Q Consensus 98 ~~~IGPEGG~lsSs 111 (204)
.-+||||||--...
T Consensus 193 ~l~IGPEGGfs~~E 206 (257)
T 1vhy_A 193 RLLIGSEGGLSAQE 206 (257)
T ss_dssp EEEECCTTCCCHHH
T ss_pred EEEEcCCCCCCHHH
Confidence 46799999964433
No 14
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=27.22 E-value=18 Score=30.02 Aligned_cols=13 Identities=38% Similarity=0.917 Sum_probs=9.6
Q ss_pred eeeecCCCceEEe
Q psy5121 98 VHAIGPEGGMVSS 110 (204)
Q Consensus 98 ~~~IGPEGG~lsS 110 (204)
.-+||||||--..
T Consensus 202 ~l~IGPEGGfs~~ 214 (268)
T 1vhk_A 202 LIVFGPEGGLTEA 214 (268)
T ss_dssp EEEECCTTCCCHH
T ss_pred EEEEcCCCCCCHH
Confidence 4679999996433
No 15
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=27.11 E-value=18 Score=29.96 Aligned_cols=11 Identities=45% Similarity=0.833 Sum_probs=8.9
Q ss_pred eeeecCCCceE
Q psy5121 98 VHAIGPEGGMV 108 (204)
Q Consensus 98 ~~~IGPEGG~l 108 (204)
.-+||||||--
T Consensus 194 ~l~IGPEGGfs 204 (257)
T 3kw2_A 194 LILIGPEGDFS 204 (257)
T ss_dssp EEEECCTTCCC
T ss_pred EEEECCCCCCC
Confidence 56899999953
No 16
>4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli}
Probab=27.04 E-value=18 Score=29.62 Aligned_cols=11 Identities=55% Similarity=0.960 Sum_probs=8.9
Q ss_pred eeeecCCCceE
Q psy5121 98 VHAIGPEGGMV 108 (204)
Q Consensus 98 ~~~IGPEGG~l 108 (204)
.-+||||||--
T Consensus 190 ~l~IGPEGGfs 200 (251)
T 4e8b_A 190 RLLIGPEGGLS 200 (251)
T ss_dssp EEEECCTTCCC
T ss_pred EEEECCCCCCC
Confidence 47899999953
No 17
>3eyk_A Hemagglutinin HA1 chain; inhibitor, envelope protein, fusion protein, glycoprotein, lipoprotein, membrane, palmitate, transmembrane, virion; HET: EYK; 2.50A {Influenza a virus} SCOP: b.19.1.2 PDB: 3eyj_A*
Probab=24.07 E-value=13 Score=33.24 Aligned_cols=27 Identities=33% Similarity=0.800 Sum_probs=20.8
Q ss_pred cCCCCCcceeeeeeCCeeeeEeeecccccChhhhhhhcC
Q psy5121 23 MVDRPSIEQVKLCYPGSVNVSVDIDQWPVNYKGILSVLT 61 (204)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~Wp~~~e~il~~l~ 61 (204)
.|.||+.+ .+||||.++ +||.+-..|.
T Consensus 79 IVEr~~a~--g~CYPG~~~----------d~eeLR~l~s 105 (323)
T 3eyk_A 79 FIERPTAV--DTCYPFDVP----------DYQSLRSILA 105 (323)
T ss_dssp EEECTTCC--CCSSCEECT----------THHHHHHHHH
T ss_pred EEECCCCC--CccCCCccC----------CHHHHHHHHh
Confidence 68899887 789999885 6776665554
Done!