Query psy5121
Match_columns 204
No_of_seqs 59 out of 61
Neff 2.0
Searched_HMMs 13730
Date Fri Aug 16 17:53:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5121.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5121hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nxza2 c.116.1.5 (A:74-247) H 40.8 3.8 0.00027 29.8 0.8 9 99-107 119-127 (174)
2 d1v6za2 c.116.1.5 (A:67-228) H 40.5 3.8 0.00028 29.6 0.8 10 98-107 111-120 (162)
3 d1vhka2 c.116.1.5 (A:74-253) H 38.9 4.2 0.0003 29.7 0.8 11 98-108 127-137 (180)
4 d1ti8a1 b.19.1.2 (A:13-325) He 22.3 8.2 0.0006 32.3 -0.1 26 22-59 74-99 (314)
5 d1uf5a_ d.160.1.2 (A:) N-carba 20.2 22 0.0016 26.0 1.9 15 126-140 1-16 (303)
6 d1qzxa2 a.36.1.1 (A:295-432) S 20.2 1.2 9E-05 32.8 -5.2 29 52-80 82-110 (138)
7 d1hq1a_ a.36.1.1 (A:) Signal s 19.2 1.4 0.0001 31.3 -4.9 28 52-79 48-75 (104)
8 d2viua_ b.19.1.2 (A:) Hemagglu 17.3 11 0.0008 31.7 -0.5 18 22-41 78-95 (320)
9 d3ctaa2 b.43.5.2 (A:90-220) CT 15.0 20 0.0015 26.2 0.6 17 35-51 38-54 (131)
10 d2vbua1 b.43.5.2 (A:2-132) CTP 14.8 25 0.0018 25.7 1.0 13 35-47 38-50 (131)
No 1
>d1nxza2 c.116.1.5 (A:74-247) Hypothetical protein HI0303 {Haemophilus influenzae [TaxId: 727]}
Probab=40.76 E-value=3.8 Score=29.84 Aligned_cols=9 Identities=56% Similarity=1.018 Sum_probs=7.8
Q ss_pred eeecCCCce
Q psy5121 99 HAIGPEGGM 107 (204)
Q Consensus 99 ~~IGPEGG~ 107 (204)
-+||||||-
T Consensus 119 iiIGPEGGf 127 (174)
T d1nxza2 119 LLIGSEGGL 127 (174)
T ss_dssp EEECCTTCC
T ss_pred EEEcCCcCc
Confidence 579999995
No 2
>d1v6za2 c.116.1.5 (A:67-228) Hypothetical protein TTHA0657 (TT1575) {Thermus thermophilus [TaxId: 274]}
Probab=40.53 E-value=3.8 Score=29.64 Aligned_cols=10 Identities=60% Similarity=1.209 Sum_probs=7.9
Q ss_pred eeeecCCCce
Q psy5121 98 VHAIGPEGGM 107 (204)
Q Consensus 98 ~~~IGPEGG~ 107 (204)
.-+||||||-
T Consensus 111 ~i~IGPEGGf 120 (162)
T d1v6za2 111 ALAVGPEGGF 120 (162)
T ss_dssp EEEECCTTCC
T ss_pred eEEEeccCCC
Confidence 3569999994
No 3
>d1vhka2 c.116.1.5 (A:74-253) Hypothetical protein YqeU {Bacillus subtilis [TaxId: 1423]}
Probab=38.89 E-value=4.2 Score=29.73 Aligned_cols=11 Identities=45% Similarity=1.045 Sum_probs=8.4
Q ss_pred eeeecCCCceE
Q psy5121 98 VHAIGPEGGMV 108 (204)
Q Consensus 98 ~~~IGPEGG~l 108 (204)
.-+||||||--
T Consensus 127 ~i~IGPEGGfs 137 (180)
T d1vhka2 127 LIVFGPEGGLT 137 (180)
T ss_dssp EEEECCTTCCC
T ss_pred EEEecCCCCCC
Confidence 45789999953
No 4
>d1ti8a1 b.19.1.2 (A:13-325) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
Probab=22.35 E-value=8.2 Score=32.33 Aligned_cols=26 Identities=23% Similarity=0.589 Sum_probs=19.0
Q ss_pred ccCCCCCcceeeeeeCCeeeeEeeecccccChhhhhhh
Q psy5121 22 NMVDRPSIEQVKLCYPGSVNVSVDIDQWPVNYKGILSV 59 (204)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Wp~~~e~il~~ 59 (204)
-.+.||+.+. .||||.++ +||.+-..
T Consensus 74 ~iiE~~~~~~--~CYPG~~~----------d~eeLR~l 99 (314)
T d1ti8a1 74 LIIERREGSD--VCYPGKFV----------NEEALRQI 99 (314)
T ss_dssp EEEECTTCBC--CSSSCCBT----------THHHHHHH
T ss_pred EEEecCCCCC--cccCcccC----------CHHHHHHH
Confidence 4678888766 99999874 56666554
No 5
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]}
Probab=20.18 E-value=22 Score=26.00 Aligned_cols=15 Identities=13% Similarity=0.228 Sum_probs=12.6
Q ss_pred eeeeEEEE-EeeecCC
Q psy5121 126 TKKIKVGL-QVNLFKP 140 (204)
Q Consensus 126 TKkIrVgL-QaQPI~P 140 (204)
|+++||++ |..||..
T Consensus 1 ~~~~~ia~~Q~~Pi~~ 16 (303)
T d1uf5a_ 1 TRQMILAVGQQGPIAR 16 (303)
T ss_dssp CCEEEEEEEEBCCCCT
T ss_pred CcEEEEEEEccCCcCC
Confidence 78999999 9888854
No 6
>d1qzxa2 a.36.1.1 (A:295-432) Signal sequence binding protein Ffh {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=20.15 E-value=1.2 Score=32.78 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=25.7
Q ss_pred ChhhhhhhcCCCCCCCCCcCCCCceEEEE
Q psy5121 52 NYKGILSVLTILDMPPPVEADPSRLTRIL 80 (204)
Q Consensus 52 ~~e~il~~l~~EeL~slEel~~kRI~RIi 80 (204)
-|+.|+...+.+|++..+-|...|+.||-
T Consensus 82 ~~~~Ii~SMT~~Er~~P~il~~SR~~RIA 110 (138)
T d1qzxa2 82 RWLAALNSMTYKELENPNIIDKSRMRRIA 110 (138)
T ss_dssp HHTHHHHSCBHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHccHHHHcCccccchHHHHHHh
Confidence 57899999999999999999988988873
No 7
>d1hq1a_ a.36.1.1 (A:) Signal sequence binding protein Ffh {Escherichia coli [TaxId: 562]}
Probab=19.19 E-value=1.4 Score=31.29 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=25.5
Q ss_pred ChhhhhhhcCCCCCCCCCcCCCCceEEE
Q psy5121 52 NYKGILSVLTILDMPPPVEADPSRLTRI 79 (204)
Q Consensus 52 ~~e~il~~l~~EeL~slEel~~kRI~RI 79 (204)
-++.|+...+.+|++..+-+...|+.||
T Consensus 48 ~~~aIi~SMT~~Er~~p~~l~~SR~~RI 75 (104)
T d1hq1a_ 48 RMEAIINSMTMKERAKPEIIKGSRKRRI 75 (104)
T ss_dssp HHHHHHHTSCHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHhcCHHHhhccccccccHHHHH
Confidence 6899999999999999999999888887
No 8
>d2viua_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
Probab=17.27 E-value=11 Score=31.68 Aligned_cols=18 Identities=33% Similarity=0.539 Sum_probs=14.3
Q ss_pred ccCCCCCcceeeeeeCCeee
Q psy5121 22 NMVDRPSIEQVKLCYPGSVN 41 (204)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~ 41 (204)
-+|.||+.+.. ||||.++
T Consensus 78 yiVEr~~a~ng--CYPG~~~ 95 (320)
T d2viua_ 78 LFVERSKAFSN--CYPYDVP 95 (320)
T ss_dssp EEEECTTCCCC--SSCEECT
T ss_pred EEEecCCCCCC--cCCCccC
Confidence 36889988875 9999864
No 9
>d3ctaa2 b.43.5.2 (A:90-220) CTP-dependent riboflavin kinase, Rfk {Thermoplasma acidophilum [TaxId: 2303]}
Probab=15.01 E-value=20 Score=26.22 Aligned_cols=17 Identities=35% Similarity=0.597 Sum_probs=11.7
Q ss_pred eeCCeeeeEeeeccccc
Q psy5121 35 CYPGSVNVSVDIDQWPV 51 (204)
Q Consensus 35 ~~~~~~~~~~~~~~Wp~ 51 (204)
-|||..||.+|-++++.
T Consensus 38 P~PGTLNv~l~~~~~~~ 54 (131)
T d3ctaa2 38 PYLGTLNIKVDQASLPE 54 (131)
T ss_dssp CCC---EEEECGGGHHH
T ss_pred CCCCcEEEEEcchhhHH
Confidence 49999999999887765
No 10
>d2vbua1 b.43.5.2 (A:2-132) CTP-dependent riboflavin kinase, Rfk {Methanococcus jannaschii [TaxId: 2190]}
Probab=14.78 E-value=25 Score=25.67 Aligned_cols=13 Identities=31% Similarity=0.682 Sum_probs=10.8
Q ss_pred eeCCeeeeEeeec
Q psy5121 35 CYPGSVNVSVDID 47 (204)
Q Consensus 35 ~~~~~~~~~~~~~ 47 (204)
-|||..||.+|-+
T Consensus 38 P~PGTLNi~l~~~ 50 (131)
T d2vbua1 38 PYEGTLNLKLDRE 50 (131)
T ss_dssp CCSSCEEEEEEEE
T ss_pred CCCCeEEEEeccc
Confidence 4999999999754
Done!