RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy5121
         (204 letters)



>gnl|CDD|187861 cd09730, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1.
           CRISPR (Clustered Regularly Interspaced Short
           Palindromic Repeats) and associated Cas proteins
           comprise a system for heritable host defense by
           prokaryotic cells against phage and other foreign DNA;
           Large proteins, some contain Zn-finger domain; signature
           gene for I-A subtype; also known as TM1802 family.
          Length = 579

 Score = 28.5 bits (64), Expect = 2.5
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 114 PQVQAVFPQGALTKKIKVGLQVNLFKPRKNVPPAALKKITVNHIPKKK 161
           PQ +A+F  G L  K+   L +   K  +N P   L K+    + KKK
Sbjct: 482 PQKKALFLLGVLVGKL---LNIQYSK-DENKP--FLNKLNGLKMDKKK 523


>gnl|CDD|213994 cd12110, PHP_HisPPase_Hisj_like, Polymerase and Histidinol
          Phosphatase domain of Histidinol phosphate phosphatase
          of Hisj like.  Bacillus subtilis YtvP HisJ has strong
          histidinol phosphate phosphatase (HisPPase) activity.
          The PHP (also called histidinol phosphatase-2/HIS2)
          domain is associated with several types of DNA
          polymerases, such as PolIIIA and family X DNA
          polymerases, stand alone histidinol phosphate
          phosphatases (HisPPases), and a number of
          uncharacterized protein families. HisPPase catalyzes
          the eighth step of histidine biosynthesis, in which
          L-histidinol phosphate undergoes dephosphorylation to
          produce histidinol. The PHP domain has four conserved
          sequence motifs and contains an invariant histidine
          that is involved in metal ion coordination. The PHP
          domain of HisPPase is structurally homologous to other
          members of the PHP family that have a distorted
          (beta/alpha)7 barrel fold with a trinuclear metal site
          on the C-terminal side of the barrel.
          Length = 244

 Score = 28.3 bits (64), Expect = 2.7
 Identities = 8/42 (19%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 57 LSVLTILD-MPPPVEADPSRLTRILTMDFPHYFAVVSRVKQE 97
           + +   +  P P E D    +R+   +   Y   + R+K++
Sbjct: 29 FTEIGFSEHAPLPFEFDDYPESRMAEEELEDYVEEIRRLKEK 70


>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
           Provisional.
          Length = 623

 Score = 27.5 bits (61), Expect = 5.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 69  VEADPSRLTRILTMDFPHYFAVVSRVKQEVHAI 101
           V+ +P    R L   FP    +++RV +EVHA+
Sbjct: 308 VDGEPILQVRNLVTRFPLRSGLLNRVTREVHAV 340


>gnl|CDD|216989 pfam02354, Latrophilin, Latrophilin Cytoplasmic C-terminal region. 
           This family consists of the cytoplasmic C-terminal
           region in latrophilin. Latrophilin is a synaptic Ca2+
           independent alpha- latrotoxin (LTX) receptor and is a
           novel member of the secretin family of G-protein coupled
           receptors that are involved in secretion. Latrophilin
           mRNA is present only in neuronal tissue. Lactrophillin
           interacts with G-alpha O.
          Length = 366

 Score = 26.9 bits (59), Expect = 8.0
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 172 ATVRSGEKSGKTDPVKPGFPSSRLTRLW 199
           +++ SG+ SG   P +     SR+ R+W
Sbjct: 19  SSIGSGKTSGSGTPGRYSTSQSRIRRMW 46


>gnl|CDD|226533 COG4047, COG4047, Uncharacterized protein conserved in archaea
           [Function unknown].
          Length = 243

 Score = 26.7 bits (59), Expect = 9.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 63  LDMPPPVEADPSRLTRILTMDFPHYF 88
            ++P PV+   +RLTR LT + P  F
Sbjct: 168 FEIPIPVDVRIARLTRKLTNEAPQKF 193


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0674    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,462,355
Number of extensions: 952694
Number of successful extensions: 677
Number of sequences better than 10.0: 1
Number of HSP's gapped: 677
Number of HSP's successfully gapped: 11
Length of query: 204
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 112
Effective length of database: 6,857,034
Effective search space: 767987808
Effective search space used: 767987808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)