RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5121
(204 letters)
>3ud1_A Ankyrin-1; beta sandwich, ZU5, adapter protein, spectrin binding,
cytos protein binding; 2.00A {Homo sapiens} PDB: 3ud2_C
Length = 326
Score = 80.2 bits (197), Expect = 3e-18
Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 6/94 (6%)
Query: 64 DMPPPVEADPSRLTRILTMDFPHYFAVVSRVKQEVHAIGPEGGMVSSSVVPQVQAVFPQG 123
++ E + R+ RI+T DFP YF ++SR+ Q+ IGPEGG + S +VP VQA FP+
Sbjct: 132 ELGSLEELEKKRVCRIITTDFPLYFVIMSRLCQDYDIIGPEGGSLKSKLVPLVQATFPEN 191
Query: 124 ALTKKIKVGLQVNLFKPRKNVPPAALKKITVNHI 157
A+TK++K+ LQ VP + K+ N
Sbjct: 192 AVTKRVKLALQAQ------PVPDELVTKLLGNQA 219
Score = 27.1 bits (59), Expect = 4.5
Identities = 7/46 (15%), Positives = 16/46 (34%)
Query: 101 IGPEGGMVSSSVVPQVQAVFPQGALTKKIKVGLQVNLFKPRKNVPP 146
+ GG + S ++ V P ++ ++ + PP
Sbjct: 12 VDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPP 57
>4d8o_A Ankyrin-2; ZU5, UPA, death domain, supramodule, protein binding;
2.20A {Homo sapiens}
Length = 581
Score = 80.4 bits (197), Expect = 5e-18
Identities = 49/94 (52%), Positives = 66/94 (70%), Gaps = 6/94 (6%)
Query: 64 DMPPPVEADPSRLTRILTMDFPHYFAVVSRVKQEVHAIGPEGGMVSSSVVPQVQAVFPQG 123
+ P + + R+ RI+T DFP YFAVVSR+KQ+ + IGPEGG++SS+VVPQVQAVFP+G
Sbjct: 149 VLDSPEDLEKKRICRIITRDFPQYFAVVSRIKQDSNLIGPEGGVLSSTVVPQVQAVFPEG 208
Query: 124 ALTKKIKVGLQVNLFKPRKNVPPAALKKITVNHI 157
ALTK+I+VGLQ + + +KKI N
Sbjct: 209 ALTKRIRVGLQA------QPMHSELVKKILGNKA 236
Score = 28.0 bits (61), Expect = 2.1
Identities = 7/46 (15%), Positives = 16/46 (34%)
Query: 101 IGPEGGMVSSSVVPQVQAVFPQGALTKKIKVGLQVNLFKPRKNVPP 146
+ GG + ++ + P T +V ++ +PP
Sbjct: 29 VDARGGAMRGCRHNGLRIIIPPRKCTAPTRVTCRLVKRHRLATMPP 74
>3f59_A Ankyrin-1; beta sandwich, ZU5, spectrin binding, alternative P
usage, ANK repeat, cytoskeleton, disease mutation; 2.00A
{Homo sapiens} PDB: 3kbt_C 3kbu_C
Length = 161
Score = 41.2 bits (96), Expect = 4e-05
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 64 DMPPPVEADPSRLTRILTMDFPHYFAVVSR 93
++ E + R+ RI+T DFP YF ++SR
Sbjct: 132 ELGSLEELEKKRVCRIITTDFPLYFVIMSR 161
Score = 27.0 bits (59), Expect = 3.4
Identities = 7/46 (15%), Positives = 16/46 (34%)
Query: 101 IGPEGGMVSSSVVPQVQAVFPQGALTKKIKVGLQVNLFKPRKNVPP 146
+ GG + S ++ V P ++ ++ + PP
Sbjct: 12 VDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPP 57
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.041
Identities = 30/166 (18%), Positives = 57/166 (34%), Gaps = 43/166 (25%)
Query: 4 PLITSTWARHLPALGVSRNMVDRPSIEQVKLCYPGSVNVSVDIDQWPVNYKGILSVLTIL 63
LI + A L L R +D + + + +I +W L
Sbjct: 186 DLIKFS-AETLSEL--IRTTLDAEKV------FTQGL----NILEW----------LENP 222
Query: 64 DMPPPVE---ADPSRLTRILTMDFPHYFAVVSRVK----QEVH-----AIGPEGGMVSSS 111
P + + P I + HY V +++ E+ A G G+V++
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHY-VVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 112 VVPQVQ--AVFPQGALTKKIKV----GLQVNLFKPRKNVPPAALKK 151
+ + F ++ K I V G++ P ++PP+ L+
Sbjct: 282 AIAETDSWESFFV-SVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Score = 27.3 bits (60), Expect = 5.0
Identities = 17/68 (25%), Positives = 21/68 (30%), Gaps = 35/68 (51%)
Query: 68 PV---EADPSRLTRILTMDFPHYFAVVSRVKQEVHAIGPEGGMVSSSVVPQVQAVFPQGA 124
PV + T IL DF GP GG +S + G
Sbjct: 487 PVKWETTTQFKATHIL--DF-----------------GP-GG--ASGL----------GV 514
Query: 125 LTKKIKVG 132
LT + K G
Sbjct: 515 LTHRNKDG 522
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat
fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Length = 177
Score = 28.8 bits (65), Expect = 0.88
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 54 KGILSVLTILDMPPPVEADPSRLTRILT 81
+ + + + D VE D ++T++L
Sbjct: 22 QHVEFIRNLPDRDLYVEIDQDKITQVLD 49
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl
MAD, two-component systems, transferase; HET: ADP; 1.9A
{Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB:
3dge_A*
Length = 258
Score = 28.3 bits (64), Expect = 1.5
Identities = 5/29 (17%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 54 KGI-LSVLTILDMPPPVEADPSRLTRILT 81
+ + + + P DP+R+ ++L
Sbjct: 116 HNVNVLFESNVPCPVEAYIDPTRIRQVLL 144
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory
system, hiska GHKL domain, structural genomics; 2.50A
{Caulobacter crescentus}
Length = 268
Score = 28.3 bits (64), Expect = 1.6
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 54 KGILSVLTILDMPPPVEADPSRLTRILT 81
G+ + + + D RL + L
Sbjct: 134 GGVTLAVECEEDVGLIRGDGKRLAQTLD 161
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA,
national project on protein structural and function
analyses; 2.71A {Thermus thermophilus}
Length = 369
Score = 26.3 bits (59), Expect = 7.7
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 8/30 (26%)
Query: 19 VSRNMVDRPSIEQVKLCYPGSVNVSVDIDQ 48
V+R+M+ L G+V V V +DQ
Sbjct: 248 VTRDML--------SLMKEGAVIVDVAVDQ 269
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD;
2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB:
1pjb_A* 1say_A
Length = 361
Score = 26.3 bits (59), Expect = 7.7
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 30 EQVKLCYPGSVNVSVDIDQ 48
V+ GSV V V +DQ
Sbjct: 252 SLVEQMRTGSVIVDVAVDQ 270
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI;
2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A
2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Length = 377
Score = 26.3 bits (59), Expect = 7.8
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 30 EQVKLCYPGSVNVSVDIDQ 48
V PG+V V + IDQ
Sbjct: 253 SLVAHMKPGAVLVDIAIDQ 271
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 26.0 bits (58), Expect = 9.8
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 9/41 (21%)
Query: 13 HLPALGVSRNMVDRPSIEQVKLCYPGS--VNVS----VDID 47
H+P ++NM+ I +K PGS +N S VDI
Sbjct: 204 HVPENPSTKNMMGAKEISLMK---PGSLLINASRGTVVDIP 241
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.420
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,133,785
Number of extensions: 178817
Number of successful extensions: 364
Number of sequences better than 10.0: 1
Number of HSP's gapped: 364
Number of HSP's successfully gapped: 19
Length of query: 204
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 115
Effective length of database: 4,216,824
Effective search space: 484934760
Effective search space used: 484934760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.8 bits)