RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5121
         (204 letters)



>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 417

 Score = 26.8 bits (59), Expect = 2.0
 Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 5/64 (7%)

Query: 58  SVLTILDMPPPVEADPSRLTRILTMDFPHYFAVVSRV----KQEVHAIGPEGGMVSSSVV 113
           +  T   +P   +A   ++ + L        AV  R+       V  I          V 
Sbjct: 1   TPFTHETLPADPKAAIRQMKQALRAQIGDVQAVFDRLSATIAARVAEINDLKAQ-GQPVW 59

Query: 114 PQVQ 117
           P + 
Sbjct: 60  PIIP 63


>d2v8qb1 d.353.1.1 (B:190-272) 5'-AMP-activated protein kinase
           subunit beta-2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 83

 Score = 25.1 bits (55), Expect = 2.6
 Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 60  LTILDMPPPVEADPSRLTRILTMDFPHYFAVVSRVKQEVHAIG 102
             IL+    +  DP+ L     +   H +A    +K  V  + 
Sbjct: 25  QVILNKDTNISCDPALLPEPNHVMLNHLYA--LSIKDSVMVLS 65


>d1yt3a2 a.60.8.3 (A:295-375) Ribonuclease D {Escherichia coli
           [TaxId: 562]}
          Length = 81

 Score = 24.7 bits (54), Expect = 3.3
 Identities = 5/26 (19%), Positives = 9/26 (34%)

Query: 82  MDFPHYFAVVSRVKQEVHAIGPEGGM 107
           MD P Y      +K  +  +     +
Sbjct: 4   MDMPGYRKAFKAIKSLITDVSETHKI 29


>d1vk1a_ d.268.1.2 (A:) Hypothetical protein PF0380 {Pyrococcus
           furiosus [TaxId: 2261]}
          Length = 232

 Score = 25.3 bits (55), Expect = 5.4
 Identities = 5/29 (17%), Positives = 13/29 (44%), Gaps = 1/29 (3%)

Query: 126 TKKIKVGL-QVNLFKPRKNVPPAALKKIT 153
            KK++    +++  KP + +    L+   
Sbjct: 3   VKKVEYVFIELDKMKPHEQLVQRELEDFI 31


>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor
          EnvZ {Escherichia coli [TaxId: 562]}
          Length = 161

 Score = 24.9 bits (54), Expect = 5.7
 Identities = 3/22 (13%), Positives = 7/22 (31%)

Query: 60 LTILDMPPPVEADPSRLTRILT 81
            +      V+  P  + R + 
Sbjct: 32 TALYPGSIEVKMHPLSIKRAVA 53


>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853
          {Thermotoga maritima [TaxId: 2336]}
          Length = 161

 Score = 24.5 bits (53), Expect = 7.2
 Identities = 5/29 (17%), Positives = 13/29 (44%), Gaps = 1/29 (3%)

Query: 54 KGI-LSVLTILDMPPPVEADPSRLTRILT 81
            + +   + +  P     DP+R+ ++L 
Sbjct: 27 HNVNVLFESNVPCPVEAYIDPTRIRQVLL 55


>d2qrdb1 d.353.1.1 (B:205-297) AMP-activated protein kinase beta
           subunit {Schizosaccharomyces pombe [TaxId: 4896]}
          Length = 93

 Score = 24.0 bits (52), Expect = 7.8
 Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 2/43 (4%)

Query: 60  LTILDMPPPVEADPSRLTRILTMDFPHYFAVVSRVKQEVHAIG 102
             IL+     + D S L     +   H  A  +  +  V A+ 
Sbjct: 34  KCILNSNTAYKEDQSVLPNPNHVLLNHLAA--ANTQLGVLALS 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0707    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 764,525
Number of extensions: 33500
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 12
Length of query: 204
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,295,466
Effective search space: 159342318
Effective search space used: 159342318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)