BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5125
(227 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OOE|A Chain A, Structural Genomics Of Caenorhabditis Elegans :
Dihydropteridine Reductase
pdb|1OOE|B Chain B, Structural Genomics Of Caenorhabditis Elegans :
Dihydropteridine Reductase
Length = 236
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 71/107 (66%)
Query: 121 SIDLNPNDQADANIIVNKDDAWLEQETTVLAELKTILAGDKIDAVICVXXXXXXXXXXXK 180
+IDL+ NDQAD+NI+V+ + W EQE ++L + + L G ++D V CV K
Sbjct: 32 NIDLSANDQADSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSK 91
Query: 181 DFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAKPALEGTP 227
DFVK+AD+M +QSVWSS +AA +A HLKPGGL+ L GA A+ TP
Sbjct: 92 DFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPTP 138
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 55/90 (61%)
Query: 23 QETTVLAELKTILAGDKIDAVICVXXXXXXXXXXXKDFVKSADIMWRQSVWSSVLAATIA 82
QE ++L + + L G ++D V CV KDFVK+AD+M +QSVWSS +AA +A
Sbjct: 56 QEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLA 115
Query: 83 ANHLKPGGLVSLPGAKPALEGTPANVDVAM 112
HLKPGGL+ L GA A+ TP+ + M
Sbjct: 116 TTHLKPGGLLQLTGAAAAMGPTPSMIGYGM 145
>pdb|1HDR|A Chain A, The Crystallographic Structure Of A Human Dihydropteridine
Reductase Nadh Binary Complex Expressed In Escherichia
Coli By A Cdna Constructed From Its Rat Homologue
Length = 244
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 72/110 (65%)
Query: 118 WVGSIDLNPNDQADANIIVNKDDAWLEQETTVLAELKTILAGDKIDAVICVXXXXXXXXX 177
WV S+D+ N++A A+IIV D++ EQ V AE+ +L +K+DA++CV
Sbjct: 36 WVASVDVVENEEASASIIVKMTDSFTEQADQVTAEVGKLLGEEKVDAILCVAGGWAGGNA 95
Query: 178 XXKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAKPALEGTP 227
K K+ D+MW+QS+W+S +++ +A HLK GGL++L GAK AL+GTP
Sbjct: 96 KSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTP 145
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 55/90 (61%)
Query: 23 QETTVLAELKTILAGDKIDAVICVXXXXXXXXXXXKDFVKSADIMWRQSVWSSVLAATIA 82
Q V AE+ +L +K+DA++CV K K+ D+MW+QS+W+S +++ +A
Sbjct: 63 QADQVTAEVGKLLGEEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLA 122
Query: 83 ANHLKPGGLVSLPGAKPALEGTPANVDVAM 112
HLK GGL++L GAK AL+GTP + M
Sbjct: 123 TKHLKEGGLLTLAGAKAALDGTPGMIGYGM 152
>pdb|1DIR|A Chain A, Crystal Structure Of A Monoclinic Form Of Dihydropteridine
Reductase From Rat Liver
pdb|1DIR|B Chain B, Crystal Structure Of A Monoclinic Form Of Dihydropteridine
Reductase From Rat Liver
pdb|1DIR|C Chain C, Crystal Structure Of A Monoclinic Form Of Dihydropteridine
Reductase From Rat Liver
pdb|1DIR|D Chain D, Crystal Structure Of A Monoclinic Form Of Dihydropteridine
Reductase From Rat Liver
pdb|1DHR|A Chain A, Crystal Structure Of Rat Liver Dihydropteridine Reductase
Length = 241
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 71/110 (64%)
Query: 118 WVGSIDLNPNDQADANIIVNKDDAWLEQETTVLAELKTILAGDKIDAVICVXXXXXXXXX 177
WV SID+ N++A A++IV D++ EQ V AE+ +L K+DA++CV
Sbjct: 33 WVASIDVVENEEASASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNA 92
Query: 178 XXKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAKPALEGTP 227
K K+ D+MW+QS+W+S +++ +A HLK GGL++L GAK AL+GTP
Sbjct: 93 KSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTP 142
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 54/90 (60%)
Query: 23 QETTVLAELKTILAGDKIDAVICVXXXXXXXXXXXKDFVKSADIMWRQSVWSSVLAATIA 82
Q V AE+ +L K+DA++CV K K+ D+MW+QS+W+S +++ +A
Sbjct: 60 QADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLA 119
Query: 83 ANHLKPGGLVSLPGAKPALEGTPANVDVAM 112
HLK GGL++L GAK AL+GTP + M
Sbjct: 120 TKHLKEGGLLTLAGAKAALDGTPGMIGYGM 149
>pdb|3ORF|A Chain A, Crystal Structure Of Dihydropteridine Reductase From
Dictyostelium Discoideum
pdb|3ORF|B Chain B, Crystal Structure Of Dihydropteridine Reductase From
Dictyostelium Discoideum
pdb|3ORF|C Chain C, Crystal Structure Of Dihydropteridine Reductase From
Dictyostelium Discoideum
pdb|3ORF|D Chain D, Crystal Structure Of Dihydropteridine Reductase From
Dictyostelium Discoideum
Length = 251
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 121 SIDLNPNDQADANIIVNKDDAWLEQETTVLAEL--KTILAGDKIDAVICVXXXXXXXXXX 178
SID N AD + + D+ E+ +V+ ++ K+I K+D +C
Sbjct: 51 SIDFRENPNADHSFTIK--DSGEEEIKSVIEKINSKSI----KVDTFVCAAGGWSGGNAS 104
Query: 179 XKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAKPALEGT 226
+F+KS M +++S+ +A I A L GGL L GA AL T
Sbjct: 105 SDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALNRT 152
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%)
Query: 39 KIDAVICVXXXXXXXXXXXKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAK 98
K+D +C +F+KS M +++S+ +A I A L GGL L GA
Sbjct: 87 KVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGAS 146
Query: 99 PALEGTPA 106
AL T
Sbjct: 147 AALNRTSG 154
>pdb|3UCE|A Chain A, Crystal Structure Of A Small-Chain Dehydrogenase In
Complex With Nadph
pdb|3UCE|B Chain B, Crystal Structure Of A Small-Chain Dehydrogenase In
Complex With Nadph
pdb|3UCE|C Chain C, Crystal Structure Of A Small-Chain Dehydrogenase In
Complex With Nadph
pdb|3UCE|D Chain D, Crystal Structure Of A Small-Chain Dehydrogenase In
Complex With Nadph
pdb|3UCF|A Chain A, Crystal Structure Of A Small-chain Dehydrogenase
pdb|3UCF|B Chain B, Crystal Structure Of A Small-chain Dehydrogenase
pdb|3UCF|C Chain C, Crystal Structure Of A Small-chain Dehydrogenase
pdb|3UCF|D Chain D, Crystal Structure Of A Small-chain Dehydrogenase
Length = 223
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 6 HMKVHLSLSRNLSLLCVQETTVLAELKTILAGDKIDAVICVXXXXXXXXXXXKDFVKSAD 65
H VH++ SR L E +V +TI A D +I V A
Sbjct: 30 HTIVHVA-SRQTGLDISDEKSVYHYFETIGA---FDHLIVTAGSYAPAGKVVDVEVTQAK 85
Query: 66 IMWRQSVWSSVLAATIAANHLKPGGLVSL 94
+ W +VLAA A +LK GG ++L
Sbjct: 86 YAFDTKFWGAVLAAKHGARYLKQGGSITL 114
>pdb|1R8X|A Chain A, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Tetragonal Form)
pdb|1R8X|B Chain B, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Tetragonal Form)
pdb|1R8Y|A Chain A, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|B Chain B, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|C Chain C, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|D Chain D, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|E Chain E, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|F Chain F, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|G Chain G, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|H Chain H, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
Length = 292
Score = 30.8 bits (68), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 12/75 (16%)
Query: 140 DAWLEQETTVLAELKTILAGDKIDAVICVXXXXXXXXXXXKDFVKSADIMWRQSVWSSVL 199
D W+ +E L K +L+GD DAVIC+ F D QS L
Sbjct: 108 DNWVIEEANWLTLDKDVLSGDGFDAVICL----------GNSFAHLPDCKGDQS--EHRL 155
Query: 200 AATIAANHLKPGGLV 214
A A+ ++PGGL+
Sbjct: 156 ALKNIASMVRPGGLL 170
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 12/71 (16%)
Query: 22 VQETTVLAELKTILAGDKIDAVICVXXXXXXXXXXXKDFVKSADIMWRQSVWSSVLAATI 81
++E L K +L+GD DAVIC+ F D QS LA
Sbjct: 112 IEEANWLTLDKDVLSGDGFDAVICL----------GNSFAHLPDCKGDQS--EHRLALKN 159
Query: 82 AANHLKPGGLV 92
A+ ++PGGL+
Sbjct: 160 IASMVRPGGLL 170
>pdb|1D2G|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2G|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2H|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|C Chain C, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|D Chain D, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1NBI|A Chain A, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|B Chain B, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|C Chain C, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|D Chain D, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam
Length = 292
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 12/75 (16%)
Query: 140 DAWLEQETTVLAELKTILAGDKIDAVICVXXXXXXXXXXXKDFVKSADIMWRQSVWSSVL 199
D W+ +E L K + AGD DAVIC+ F D QS L
Sbjct: 108 DKWVIEEANWLTLDKDVPAGDGFDAVICL----------GNSFAHLPDSKGDQS--EHRL 155
Query: 200 AATIAANHLKPGGLV 214
A A+ ++PGGL+
Sbjct: 156 ALKNIASMVRPGGLL 170
>pdb|1XVA|A Chain A, Methyltransferase
pdb|1XVA|B Chain B, Methyltransferase
pdb|1BHJ|A Chain A, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1BHJ|B Chain B, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1D2C|A Chain A, Methyltransferase
pdb|1D2C|B Chain B, Methyltransferase
pdb|1NBH|A Chain A, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|B Chain B, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|C Chain C, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|D Chain D, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1KIA|A Chain A, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|B Chain B, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|C Chain C, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|D Chain D, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|2IDJ|A Chain A, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|B Chain B, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|C Chain C, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|D Chain D, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDK|A Chain A, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|B Chain B, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|C Chain C, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|D Chain D, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
Length = 292
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 12/75 (16%)
Query: 140 DAWLEQETTVLAELKTILAGDKIDAVICVXXXXXXXXXXXKDFVKSADIMWRQSVWSSVL 199
D W+ +E L K + AGD DAVIC+ F D QS L
Sbjct: 108 DKWVIEEANWLTLDKDVPAGDGFDAVICL----------GNSFAHLPDSKGDQS--EHRL 155
Query: 200 AATIAANHLKPGGLV 214
A A+ ++PGGL+
Sbjct: 156 ALKNIASMVRPGGLL 170
>pdb|3THR|A Chain A, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|B Chain B, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|C Chain C, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|D Chain D, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THS|A Chain A, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|B Chain B, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|C Chain C, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|D Chain D, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
Length = 293
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 12/75 (16%)
Query: 140 DAWLEQETTVLAELKTILAGDKIDAVICVXXXXXXXXXXXKDFVKSADIMWRQSVWSSVL 199
D W+ +E L K + AGD DAVIC+ F D QS L
Sbjct: 109 DKWVIEEANWLTLDKDVPAGDGFDAVICL----------GNSFAHLPDSKGDQS--EHRL 156
Query: 200 AATIAANHLKPGGLV 214
A A+ ++PGGL+
Sbjct: 157 ALKNIASMVRPGGLL 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,057,163
Number of Sequences: 62578
Number of extensions: 203541
Number of successful extensions: 422
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 403
Number of HSP's gapped (non-prelim): 20
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)