BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5125
(227 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3T0Z7|DHPR_BOVIN Dihydropteridine reductase OS=Bos taurus GN=QDPR PE=2 SV=1
Length = 242
Score = 128 bits (322), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 82/110 (74%)
Query: 118 WVGSIDLNPNDQADANIIVNKDDAWLEQETTVLAELKTILAGDKIDAVICVAGGWAGGNA 177
WV SID+ N++A AN++V D++ EQ V AE+ +L +K+DA++CVAGGWAGGNA
Sbjct: 34 WVASIDVQENEEASANVVVKMTDSFTEQADQVTAEVGKLLGTEKVDAILCVAGGWAGGNA 93
Query: 178 AAKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAKPALEGTP 227
+K K+ D+MW+QSVW+S +++ +A HLK GGL++L GA+ AL+GTP
Sbjct: 94 KSKSLFKNCDLMWKQSVWTSTISSHLATKHLKEGGLLTLAGARAALDGTP 143
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 65/90 (72%)
Query: 23 QETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIA 82
Q V AE+ +L +K+DA++CVAGGWAGGNA +K K+ D+MW+QSVW+S +++ +A
Sbjct: 61 QADQVTAEVGKLLGTEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSVWTSTISSHLA 120
Query: 83 ANHLKPGGLVSLPGAKPALEGTPANVDVAM 112
HLK GGL++L GA+ AL+GTP + M
Sbjct: 121 TKHLKEGGLLTLAGARAALDGTPGMIGYGM 150
>sp|Q8MJ30|DHPR_PIG Dihydropteridine reductase OS=Sus scrofa GN=QDPR PE=2 SV=1
Length = 243
Score = 126 bits (317), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 82/110 (74%)
Query: 118 WVGSIDLNPNDQADANIIVNKDDAWLEQETTVLAELKTILAGDKIDAVICVAGGWAGGNA 177
WV SID+ N++A AN++V D++ EQ V AE+ +L +K+DA++CVAGGWAGGNA
Sbjct: 35 WVASIDVVENEEASANVVVKMTDSFTEQADQVTAEVGKLLGTEKVDAILCVAGGWAGGNA 94
Query: 178 AAKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAKPALEGTP 227
+K K+ D+MW+QS+W+S +++ +A HLK GGL++L GAK AL+GTP
Sbjct: 95 KSKSLFKNCDLMWKQSMWTSTISSHLATKHLKEGGLLTLAGAKAALDGTP 144
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 65/90 (72%)
Query: 23 QETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIA 82
Q V AE+ +L +K+DA++CVAGGWAGGNA +K K+ D+MW+QS+W+S +++ +A
Sbjct: 62 QADQVTAEVGKLLGTEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSMWTSTISSHLA 121
Query: 83 ANHLKPGGLVSLPGAKPALEGTPANVDVAM 112
HLK GGL++L GAK AL+GTP + M
Sbjct: 122 TKHLKEGGLLTLAGAKAALDGTPGMIGYGM 151
>sp|P09417|DHPR_HUMAN Dihydropteridine reductase OS=Homo sapiens GN=QDPR PE=1 SV=2
Length = 244
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 82/110 (74%)
Query: 118 WVGSIDLNPNDQADANIIVNKDDAWLEQETTVLAELKTILAGDKIDAVICVAGGWAGGNA 177
WV S+D+ N++A A+IIV D++ EQ V AE+ +L +K+DA++CVAGGWAGGNA
Sbjct: 36 WVASVDVVENEEASASIIVKMTDSFTEQADQVTAEVGKLLGEEKVDAILCVAGGWAGGNA 95
Query: 178 AAKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAKPALEGTP 227
+K K+ D+MW+QS+W+S +++ +A HLK GGL++L GAK AL+GTP
Sbjct: 96 KSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTP 145
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 65/90 (72%)
Query: 23 QETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIA 82
Q V AE+ +L +K+DA++CVAGGWAGGNA +K K+ D+MW+QS+W+S +++ +A
Sbjct: 63 QADQVTAEVGKLLGEEKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLA 122
Query: 83 ANHLKPGGLVSLPGAKPALEGTPANVDVAM 112
HLK GGL++L GAK AL+GTP + M
Sbjct: 123 TKHLKEGGLLTLAGAKAALDGTPGMIGYGM 152
>sp|P11348|DHPR_RAT Dihydropteridine reductase OS=Rattus norvegicus GN=Qdpr PE=1 SV=1
Length = 241
Score = 125 bits (313), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 81/110 (73%)
Query: 118 WVGSIDLNPNDQADANIIVNKDDAWLEQETTVLAELKTILAGDKIDAVICVAGGWAGGNA 177
WV SID+ N++A A++IV D++ EQ V AE+ +L K+DA++CVAGGWAGGNA
Sbjct: 33 WVASIDVVENEEASASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNA 92
Query: 178 AAKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAKPALEGTP 227
+K K+ D+MW+QS+W+S +++ +A HLK GGL++L GAK AL+GTP
Sbjct: 93 KSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTP 142
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/90 (50%), Positives = 64/90 (71%)
Query: 23 QETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIA 82
Q V AE+ +L K+DA++CVAGGWAGGNA +K K+ D+MW+QS+W+S +++ +A
Sbjct: 60 QADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLA 119
Query: 83 ANHLKPGGLVSLPGAKPALEGTPANVDVAM 112
HLK GGL++L GAK AL+GTP + M
Sbjct: 120 TKHLKEGGLLTLAGAKAALDGTPGMIGYGM 149
>sp|Q8BVI4|DHPR_MOUSE Dihydropteridine reductase OS=Mus musculus GN=Qdpr PE=1 SV=2
Length = 241
Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 81/110 (73%)
Query: 118 WVGSIDLNPNDQADANIIVNKDDAWLEQETTVLAELKTILAGDKIDAVICVAGGWAGGNA 177
WV SID+ N++A A+++V D++ EQ V A++ +L K+DA++CVAGGWAGGNA
Sbjct: 33 WVASIDVVENEEASASVVVKMTDSFTEQADQVTADVGKLLGDQKVDAILCVAGGWAGGNA 92
Query: 178 AAKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAKPALEGTP 227
+K K+ D+MW+QS+W+S +++ +A HLK GGL++L GAK AL+GTP
Sbjct: 93 KSKSLFKNCDMMWKQSMWTSTISSHLATKHLKEGGLLTLAGAKAALDGTP 142
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 64/90 (71%)
Query: 23 QETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIA 82
Q V A++ +L K+DA++CVAGGWAGGNA +K K+ D+MW+QS+W+S +++ +A
Sbjct: 60 QADQVTADVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDMMWKQSMWTSTISSHLA 119
Query: 83 ANHLKPGGLVSLPGAKPALEGTPANVDVAM 112
HLK GGL++L GAK AL+GTP + M
Sbjct: 120 TKHLKEGGLLTLAGAKAALDGTPGMIGYGM 149
>sp|Q86A17|DHPR_DICDI Dihydropteridine reductase OS=Dictyostelium discoideum GN=qdpr PE=1
SV=1
Length = 231
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 61/108 (56%), Gaps = 8/108 (7%)
Query: 121 SIDLNPNDQADANIIVNKDDAWLEQETTVLAEL--KTILAGDKIDAVICVAGGWAGGNAA 178
SID N AD + + D+ E+ +V+ ++ K+I K+D +C AGGW+GGNA+
Sbjct: 31 SIDFRENPNADHSFTIK--DSGEEEIKSVIEKINSKSI----KVDTFVCAAGGWSGGNAS 84
Query: 179 AKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAKPALEGT 226
+ +F+KS M +++S+ +A I A L GGL L GA AL T
Sbjct: 85 SDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALNRT 132
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 41/66 (62%)
Query: 39 KIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAK 98
K+D +C AGGW+GGNA++ +F+KS M +++S+ +A I A L GGL L GA
Sbjct: 67 KVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGAS 126
Query: 99 PALEGT 104
AL T
Sbjct: 127 AALNRT 132
>sp|O34851|LDC_BACSU Probable murein peptide carboxypeptidase OS=Bacillus subtilis
(strain 168) GN=ykfA PE=2 SV=2
Length = 319
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 25/152 (16%)
Query: 6 HMKVHLSLSRNLSLLCVQETTVLAELKTILAGDKIDAVICVAGGWAGGN-AAAKDF---V 61
+K+ +L L Q+ LA+L + D++ AV+C GG+ G AA DF
Sbjct: 47 QVKLGKALKNQHGYLAGQDDERLADLHEMFRDDEVKAVLCACGGFGTGRIAAGIDFSLIR 106
Query: 62 KSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAKPALEGTPANVDVAMELLYNWVGS 121
K I W S + L I N GLV+ G +L +G
Sbjct: 107 KHPKIFWGYSDI-TFLHTAIHQN----TGLVTFHGP----------------MLSTDIGL 145
Query: 122 IDLNPNDQADANIIVNKDDAWLEQETTVLAEL 153
D++P +A + + + +E + L EL
Sbjct: 146 DDVHPLTKASYKQLFQETEFTYTEELSPLTEL 177
>sp|Q7DDL2|RLME_NEIMB Ribosomal RNA large subunit methyltransferase E OS=Neisseria
meningitidis serogroup B (strain MC58) GN=rlmE PE=3 SV=1
Length = 206
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 22 VQETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATI 81
+E VLA+ +T+L +D VIC GNA + +S + LA
Sbjct: 98 FRENDVLAQFETLLDNRPLDLVICDMAPNMSGNAVSDQ---------ARSFYLCELALDF 148
Query: 82 AANHLKPGG 90
A+ HLK GG
Sbjct: 149 ASQHLKTGG 157
Score = 33.9 bits (76), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 145 QETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIA 204
+E VLA+ +T+L +D VIC GNA + +S + LA A
Sbjct: 99 RENDVLAQFETLLDNRPLDLVICDMAPNMSGNAVSDQ---------ARSFYLCELALDFA 149
Query: 205 ANHLKPGG 212
+ HLK GG
Sbjct: 150 SQHLKTGG 157
>sp|Q9JQX5|RLME_NEIMA Ribosomal RNA large subunit methyltransferase E OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=rlmE PE=3 SV=1
Length = 206
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 22 VQETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATI 81
+E VLA+ +T+L +D VIC GNA + +S + LA
Sbjct: 98 FRENDVLAQFETLLDNRPLDLVICDMAPNMSGNAVSDQ---------ARSFYLCELALDF 148
Query: 82 AANHLKPGG 90
A+ HLK GG
Sbjct: 149 ASQHLKTGG 157
Score = 33.9 bits (76), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 145 QETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIA 204
+E VLA+ +T+L +D VIC GNA + +S + LA A
Sbjct: 99 RENDVLAQFETLLDNRPLDLVICDMAPNMSGNAVSDQ---------ARSFYLCELALDFA 149
Query: 205 ANHLKPGG 212
+ HLK GG
Sbjct: 150 SQHLKTGG 157
>sp|A9M3N1|RLME_NEIM0 Ribosomal RNA large subunit methyltransferase E OS=Neisseria
meningitidis serogroup C (strain 053442) GN=rlmE PE=3
SV=1
Length = 206
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 22 VQETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATI 81
+E VLA+ +T+L +D VIC GNA + +S + LA
Sbjct: 98 FRENDVLAQFETLLDNRPLDLVICDMAPNMSGNAVSDQ---------ARSFYLCELALDF 148
Query: 82 AANHLKPGG 90
A+ HLK GG
Sbjct: 149 ASQHLKTGG 157
Score = 33.9 bits (76), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 145 QETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIA 204
+E VLA+ +T+L +D VIC GNA + +S + LA A
Sbjct: 99 RENDVLAQFETLLDNRPLDLVICDMAPNMSGNAVSDQ---------ARSFYLCELALDFA 149
Query: 205 ANHLKPGG 212
+ HLK GG
Sbjct: 150 SQHLKTGG 157
>sp|B4RK82|RLME_NEIG2 Ribosomal RNA large subunit methyltransferase E OS=Neisseria
gonorrhoeae (strain NCCP11945) GN=rlmE PE=3 SV=1
Length = 206
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 22 VQETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATI 81
+E VLA+ +T+L +D VIC GNA + +S + LA
Sbjct: 98 FRENDVLAQFETLLDNRPLDLVICDMAPNMSGNAVSDQ---------ARSFYLCELALDF 148
Query: 82 AANHLKPGG 90
A+ HLK GG
Sbjct: 149 ASQHLKTGG 157
Score = 33.9 bits (76), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 145 QETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIA 204
+E VLA+ +T+L +D VIC GNA + +S + LA A
Sbjct: 99 RENDVLAQFETLLDNRPLDLVICDMAPNMSGNAVSDQ---------ARSFYLCELALDFA 149
Query: 205 ANHLKPGG 212
+ HLK GG
Sbjct: 150 SQHLKTGG 157
>sp|Q5F9L0|RLME_NEIG1 Ribosomal RNA large subunit methyltransferase E OS=Neisseria
gonorrhoeae (strain ATCC 700825 / FA 1090) GN=rlmE PE=3
SV=1
Length = 206
Score = 34.3 bits (77), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Query: 22 VQETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATI 81
+E VLA+ +T+L +D VIC GNA + +S + LA
Sbjct: 98 FRENDVLAQFETLLDNRPLDLVICDMAPNMSGNAVSDQ---------ARSFYLCELALDF 148
Query: 82 AANHLKPGG 90
A+ HLK GG
Sbjct: 149 ASQHLKTGG 157
Score = 33.9 bits (76), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 145 QETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIA 204
+E VLA+ +T+L +D VIC GNA + +S + LA A
Sbjct: 99 RENDVLAQFETLLDNRPLDLVICDMAPNMSGNAVSDQ---------ARSFYLCELALDFA 149
Query: 205 ANHLKPGG 212
+ HLK GG
Sbjct: 150 SQHLKTGG 157
>sp|Q5P1G0|RLME_AROAE Ribosomal RNA large subunit methyltransferase E OS=Aromatoleum
aromaticum (strain EbN1) GN=rlmE PE=3 SV=1
Length = 207
Score = 33.9 bits (76), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 22 VQETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATI 81
QE VLAEL++ L G +D V+ N + D A +S++ LA
Sbjct: 97 FQEEPVLAELESRLGGLPVDVVLSDMAP----NMSGIDTTDQA-----RSIYLGELALEF 147
Query: 82 AANHLKPGG 90
A +HLKPGG
Sbjct: 148 AGHHLKPGG 156
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 145 QETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIA 204
QE VLAEL++ L G +D V+ N + D A +S++ LA A
Sbjct: 98 QEEPVLAELESRLGGLPVDVVLSDMAP----NMSGIDTTDQA-----RSIYLGELALEFA 148
Query: 205 ANHLKPGG 212
+HLKPGG
Sbjct: 149 GHHLKPGG 156
>sp|Q5LW11|YIDC_RUEPO Membrane protein insertase YidC OS=Ruegeria pomeroyi (strain ATCC
700808 / DSM 15171 / DSS-3) GN=yidC PE=3 SV=1
Length = 609
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 13/124 (10%)
Query: 33 TILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGLV 92
++ +GD + V W+ G+ + D + +V SV + A P G++
Sbjct: 152 SLESGDTLSVGTPVTLSWSNGSGVTFRRTLAVDEDYMFTVTQSVENGSAAPIGAAPYGIL 211
Query: 93 S---------LPGAKPAL---EGTPANVDVAM-ELLYNWVGSIDLNPNDQADANIIVNKD 139
+ LPG K EG A D + E+ Y V D++PN+ A A + NK
Sbjct: 212 ARHGIGEDADLPGLKNFFILHEGVVAMNDGTLSEIDYKDVRKFDIDPNEGAQAEVFQNKS 271
Query: 140 DAWL 143
D W+
Sbjct: 272 DGWI 275
>sp|A4G4B0|RLME_HERAR Ribosomal RNA large subunit methyltransferase E OS=Herminiimonas
arsenicoxydans GN=rlmE PE=3 SV=1
Length = 214
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 22 VQETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATI 81
+E VL +L+ +LAG K+D V+ G A A D + DI+ LA
Sbjct: 103 FREQNVLEQLEVVLAGRKVDLVLSDMAPNLSGIAVA-DAARMMDIIE--------LAIDF 153
Query: 82 AANHLKPGG 90
A +H+KP G
Sbjct: 154 AQHHMKPSG 162
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 145 QETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIA 204
+E VL +L+ +LAG K+D V+ G A A D + DI+ LA A
Sbjct: 104 REQNVLEQLEVVLAGRKVDLVLSDMAPNLSGIAVA-DAARMMDIIE--------LAIDFA 154
Query: 205 ANHLKPGG 212
+H+KP G
Sbjct: 155 QHHMKPSG 162
>sp|A1K598|RLME_AZOSB Ribosomal RNA large subunit methyltransferase E OS=Azoarcus sp.
(strain BH72) GN=rlmE PE=3 SV=1
Length = 205
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 24 ETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIAA 83
E VLAEL++ LAG +D V+ + A + A + +S++ LA A
Sbjct: 99 EDAVLAELESRLAGAAVDLVL---------SDMAPNLSGVATVDQARSIYLCELALDFAR 149
Query: 84 NHLKPGG 90
HLKPGG
Sbjct: 150 RHLKPGG 156
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 146 ETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIAA 205
E VLAEL++ LAG +D V+ + A + A + +S++ LA A
Sbjct: 99 EDAVLAELESRLAGAAVDLVL---------SDMAPNLSGVATVDQARSIYLCELALDFAR 149
Query: 206 NHLKPGG 212
HLKPGG
Sbjct: 150 RHLKPGG 156
>sp|Q9QXF8|GNMT_MOUSE Glycine N-methyltransferase OS=Mus musculus GN=Gnmt PE=1 SV=3
Length = 293
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 140 DAWLEQETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVL 199
D W+ +E L K +L+GD DAVIC+ GN+ F D QS L
Sbjct: 109 DNWVIEEANWLTLDKDVLSGDGFDAVICL------GNS----FAHLPDCKGDQS--EHRL 156
Query: 200 AATIAANHLKPGGLV 214
A A+ ++PGGL+
Sbjct: 157 ALKNIASMVRPGGLL 171
>sp|A1KT57|RLME_NEIMF Ribosomal RNA large subunit methyltransferase E OS=Neisseria
meningitidis serogroup C / serotype 2a (strain ATCC
700532 / FAM18) GN=rlmE PE=3 SV=1
Length = 206
Score = 31.2 bits (69), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 145 QETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIA 204
+E VLA+ + +L +D VIC GNA + +S + LA A
Sbjct: 99 RENDVLAQFEGLLNNRPLDLVICDMAPNMSGNAVSDQ---------ARSFYLCELALDFA 149
Query: 205 ANHLKPGG 212
+ HLK GG
Sbjct: 150 SQHLKTGG 157
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,363,456
Number of Sequences: 539616
Number of extensions: 3495117
Number of successful extensions: 10442
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 10408
Number of HSP's gapped (non-prelim): 48
length of query: 227
length of database: 191,569,459
effective HSP length: 113
effective length of query: 114
effective length of database: 130,592,851
effective search space: 14887585014
effective search space used: 14887585014
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)