RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5125
(227 letters)
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 80.8 bits (200), Expect = 9e-19
Identities = 61/110 (55%), Positives = 83/110 (75%)
Query: 118 WVGSIDLNPNDQADANIIVNKDDAWLEQETTVLAELKTILAGDKIDAVICVAGGWAGGNA 177
V +IDL+ NDQAD+NI+V+ + W EQE ++L + + L G ++D V CVAGGWAGG+A
Sbjct: 29 TVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSA 88
Query: 178 AAKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAKPALEGTP 227
++KDFVK+AD+M +QSVWSS +AA +A HLKPGGL+ L GA A+ TP
Sbjct: 89 SSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPTP 138
Score = 63.5 bits (155), Expect = 2e-12
Identities = 48/90 (53%), Positives = 66/90 (73%)
Query: 23 QETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIA 82
QE ++L + + L G ++D V CVAGGWAGG+A++KDFVK+AD+M +QSVWSS +AA +A
Sbjct: 56 QEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLA 115
Query: 83 ANHLKPGGLVSLPGAKPALEGTPANVDVAM 112
HLKPGGL+ L GA A+ TP+ + M
Sbjct: 116 TTHLKPGGLLQLTGAAAAMGPTPSMIGYGM 145
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 76.2 bits (188), Expect = 5e-17
Identities = 56/110 (50%), Positives = 81/110 (73%)
Query: 118 WVGSIDLNPNDQADANIIVNKDDAWLEQETTVLAELKTILAGDKIDAVICVAGGWAGGNA 177
WV SID+ N++A A++IV D++ EQ V AE+ +L K+DA++CVAGGWAGGNA
Sbjct: 33 WVASIDVVENEEASASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNA 92
Query: 178 AAKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAKPALEGTP 227
+K K+ D+MW+QS+W+S +++ +A HLK GGL++L GAK AL+GTP
Sbjct: 93 KSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTP 142
Score = 58.1 bits (141), Expect = 1e-10
Identities = 45/90 (50%), Positives = 64/90 (71%)
Query: 23 QETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIA 82
Q V AE+ +L K+DA++CVAGGWAGGNA +K K+ D+MW+QS+W+S +++ +A
Sbjct: 60 QADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLA 119
Query: 83 ANHLKPGGLVSLPGAKPALEGTPANVDVAM 112
HLK GGL++L GAK AL+GTP + M
Sbjct: 120 TKHLKEGGLLTLAGAKAALDGTPGMIGYGM 149
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 69.2 bits (170), Expect = 2e-14
Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 4/110 (3%)
Query: 118 WVGSIDLNPNDQADANIIVNKDDAWLEQETTVLAELKTILAGDKIDAVICVAGGWAGGNA 177
SID N AD + + D+ E+ +V+ ++ + K+D +C AGGW+GGNA
Sbjct: 48 NTISIDFRENPNADHSFTI--KDSGEEEIKSVIEKINS--KSIKVDTFVCAAGGWSGGNA 103
Query: 178 AAKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAKPALEGTP 227
++ +F+KS M +++S+ +A I A L GGL L GA AL T
Sbjct: 104 SSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALNRTS 153
Score = 57.3 bits (139), Expect = 3e-10
Identities = 29/67 (43%), Positives = 41/67 (61%)
Query: 39 KIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAK 98
K+D +C AGGW+GGNA++ +F+KS M +++S+ +A I A L GGL L GA
Sbjct: 87 KVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGAS 146
Query: 99 PALEGTP 105
AL T
Sbjct: 147 AALNRTS 153
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.007
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 17/72 (23%)
Query: 64 ADIMWRQSV-WSSVLAATIAANHL---KPGGLVSLPGA--KPALEGTPANVDVAMELLYN 117
D + R V W + A H+ PGG L G +GT V VA
Sbjct: 480 VDCIIRLPVKWETTTQFK--ATHILDFGPGGASGL-GVLTHRNKDGTGVRVIVA------ 530
Query: 118 WVGSIDLNPNDQ 129
G++D+NP+D
Sbjct: 531 --GTLDINPDDD 540
Score = 28.9 bits (64), Expect = 1.9
Identities = 6/44 (13%), Positives = 12/44 (27%), Gaps = 8/44 (18%)
Query: 82 AANHLKPGGLVSLPGAKPALEGTPANVDVAMELL-YNWVGSIDL 124
N+ G +D +L + + ID+
Sbjct: 1843 IVNYNVENQQY-------VAAGDLRALDTVTNVLNFIKLQKIDI 1879
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF
protein, center for structu genomics of infectious
diseases, immune system; 1.50A {Bacillus anthracis} PDB:
3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Length = 336
Score = 35.4 bits (82), Expect = 0.009
Identities = 14/90 (15%), Positives = 23/90 (25%), Gaps = 12/90 (13%)
Query: 86 LKPG---GLVSLPGAKPALEGTPANVDVAMELLYNWVGSIDLNPNDQADANIIVNKDDAW 142
LK G G+ S + P +P + A L I
Sbjct: 10 LKYGDTIGIYSP--SSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQE- 66
Query: 143 LEQETTVLAELKTILAGDKIDAVICVAGGW 172
EL ++ + ++ GG
Sbjct: 67 ------RAKELNALIRNPNVSCIMSTIGGM 90
Score = 30.0 bits (68), Expect = 0.56
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 28 LAELKTILAGDKIDAVICVAGGW 50
EL ++ + ++ GG
Sbjct: 68 AKELNALIRNPNVSCIMSTIGGM 90
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB:
3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Length = 371
Score = 34.1 bits (78), Expect = 0.032
Identities = 12/90 (13%), Positives = 19/90 (21%), Gaps = 12/90 (13%)
Query: 86 LKPG---GLVSLPGAKPALEGTPANVDVAMELLYNWVGSIDLNPNDQADANIIVNKDDAW 142
L G G S + PA +E L +
Sbjct: 40 LAVGDTIGFFSS--SAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKE- 96
Query: 143 LEQETTVLAELKTILAGDKIDAVICVAGGW 172
E ++ I ++ GG
Sbjct: 97 ------RAQEFNELVYNPDITCIMSTIGGD 120
Score = 30.2 bits (68), Expect = 0.57
Identities = 4/23 (17%), Positives = 8/23 (34%)
Query: 28 LAELKTILAGDKIDAVICVAGGW 50
E ++ I ++ GG
Sbjct: 98 AQEFNELVYNPDITCIMSTIGGD 120
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.76A {Homo sapiens}
Length = 196
Score = 32.1 bits (74), Expect = 0.093
Identities = 14/98 (14%), Positives = 29/98 (29%), Gaps = 24/98 (24%)
Query: 121 SIDLNPNDQ-ADANIIVNKDDAWLEQETTVLAELKTILAGDKIDAVIC-----VAGGWAG 174
+DL A + D + T + +L G + D ++ G
Sbjct: 60 GVDLLHIFPLEGATFLCPAD--VTDPRT--SQRILEVLPGRRADVILSDMAPNATGFR-- 113
Query: 175 GNAAAKDFVKSADIMWRQSVWSSVLAATIAANHLKPGG 212
D + + + ++ + L+PGG
Sbjct: 114 ----DLDHDRLISL--------CLTLLSVTPDILQPGG 139
Score = 28.7 bits (65), Expect = 1.1
Identities = 9/72 (12%), Positives = 22/72 (30%), Gaps = 19/72 (26%)
Query: 24 ETTVLAELKTILAGDKIDAVIC-----VAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLA 78
+ + +L G + D ++ G D + + +
Sbjct: 82 DPRTSQRILEVLPGRRADVILSDMAPNATGFR------DLDHDRLISL--------CLTL 127
Query: 79 ATIAANHLKPGG 90
++ + L+PGG
Sbjct: 128 LSVTPDILQPGG 139
>4eys_A MCCC family protein; MCCF like, serine peptidase, csgid, structural
genomics, NIA national institute of allergy and
infectious diseases; HET: AMP; 1.58A {Streptococcus
pneumoniae} PDB: 4e94_A*
Length = 346
Score = 31.8 bits (72), Expect = 0.14
Identities = 26/148 (17%), Positives = 53/148 (35%), Gaps = 20/148 (13%)
Query: 74 SSVLAATIAANHLKPGGLVSLPGAKPALEGTPANVDVAMELLYNWVGSIDLNPNDQADAN 133
S+ + +TI G+VSL + VD+ ++ L + + P+ +
Sbjct: 1 SNAMVSTI--------GIVSLSSGIIGEDFVKHEVDLGIQRLKDLGLNPIFLPHSLKGLD 52
Query: 134 IIVNKDDAWLEQETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSAD---IMW 190
I + +A +L + D ID ++C GG ++ D +
Sbjct: 53 FIKDHPEA-------RAEDLIHAFSDDSIDMILCAIGGD--DTYRLLPYLFENDQLQKVI 103
Query: 191 RQSVWSSVLAATIAANHLKPGGLVSLPG 218
+Q ++ T+ L G+ + G
Sbjct: 104 KQKIFLGFSDTTMNHLMLHKLGIKTFYG 131
Score = 28.0 bits (62), Expect = 2.4
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Query: 28 LAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSAD---IMWRQSVWSSVLAATIAAN 84
+L + D ID ++C GG ++ D + +Q ++ T+
Sbjct: 62 AEDLIHAFSDDSIDMILCAIGGD--DTYRLLPYLFENDQLQKVIKQKIFLGFSDTTMNHL 119
Query: 85 HLKPGGLVSLPG 96
L G+ + G
Sbjct: 120 MLHKLGIKTFYG 131
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.70A {Plasmodium falciparum}
Length = 201
Score = 31.1 bits (71), Expect = 0.18
Identities = 23/124 (18%), Positives = 38/124 (30%), Gaps = 35/124 (28%)
Query: 110 VAMELLYNWVG---SIDLNPND--------QAD-----ANIIVNKDDAWLEQETTVLAEL 153
V +E N+ ID D Q + N I N + +V +L
Sbjct: 39 VILERTKNYKNKIIGIDKKIMDPIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKL 98
Query: 154 KTILAGDKIDAVIC-----VAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIAANHL 208
K IL KID ++ G D + S ++ ++ ++
Sbjct: 99 KEILQDKKIDIILSDAAVPCIGNK------IDDHLNSCEL--------TLSITHFMEQYI 144
Query: 209 KPGG 212
GG
Sbjct: 145 NIGG 148
Score = 26.8 bits (60), Expect = 5.2
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 19/74 (25%)
Query: 22 VQETTVLAELKTILAGDKIDAVIC-----VAGGWAGGNAAAKDFVKSADIMWRQSVWSSV 76
+ +V +LK IL KID ++ G D + S ++ ++
Sbjct: 89 MNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKI------DDHLNSCEL--------TL 134
Query: 77 LAATIAANHLKPGG 90
++ GG
Sbjct: 135 SITHFMEQYINIGG 148
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for
structural genomi infectious diseases, csgid, serine
peptidase S66; 1.95A {Bacillus anthracis}
Length = 331
Score = 31.0 bits (71), Expect = 0.24
Identities = 12/91 (13%), Positives = 31/91 (34%), Gaps = 14/91 (15%)
Query: 86 LKPG---GLVSLPGAKPALEGTPANVDVAMELLYNWVG-SIDLNPNDQADANIIVNKDDA 141
LK G ++S + + N +A++ L G + + + + + +
Sbjct: 9 LKKGDEIRVISP--SCSLSIVSTENRRLAVKRLTEL-GFHVTFSTHAEEIDRFASSSISS 65
Query: 142 WLEQETTVLAELKTILAGDKIDAVICVAGGW 172
+ +L + A++ GG+
Sbjct: 66 -------RVQDLHEAFRDPNVKAILTTLGGY 89
Score = 29.9 bits (68), Expect = 0.67
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 28 LAELKTILAGDKIDAVICVAGGW 50
+ +L + A++ GG+
Sbjct: 67 VQDLHEAFRDPNVKAILTTLGGY 89
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock
proteins, 23S ribosomal RNA; HET: SAM; 1.50A
{Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Length = 180
Score = 30.5 bits (70), Expect = 0.28
Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 25/110 (22%)
Query: 110 VAMELLYN--WVGSIDLNPNDQADANIIVNKDDAWLEQETTVLAELKTILAGDKIDAVIC 167
+ + + + DL P D + D + ++ + L + K+ V+
Sbjct: 39 YVVTQIGGKGRIIACDLLPMDPIVGVDFLQGD--FRDELV--MKALLERVGDSKVQVVMS 94
Query: 168 -----VAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIAANHLKPGG 212
++G A D ++ + LA + + L PGG
Sbjct: 95 DMAPNMSGTP------AVDIPRAMYL--------VELALEMCRDVLAPGG 130
Score = 29.0 bits (66), Expect = 0.93
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 19/72 (26%)
Query: 24 ETTVLAELKTILAGDKIDAVIC-----VAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLA 78
+ V+ L + K+ V+ ++G A D ++ + LA
Sbjct: 73 DELVMKALLERVGDSKVQVVMSDMAPNMSGTP------AVDIPRAMYL--------VELA 118
Query: 79 ATIAANHLKPGG 90
+ + L PGG
Sbjct: 119 LEMCRDVLAPGG 130
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.44
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 16/45 (35%)
Query: 69 RQSVWSSVLAATIAANHLKPGGLVSLPGAKPALEGTPANVDVAME 113
+Q++ L A+ LK L + + PAL A + ME
Sbjct: 19 KQAL--KKLQAS-----LK---LYA-DDSAPAL----A-IKATME 47
Score = 27.6 bits (60), Expect = 2.5
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 11/33 (33%)
Query: 191 RQSVWSSVLAATIAANHLKPGGLVSLPGAKPAL 223
+Q++ L A+ LK L + + PAL
Sbjct: 19 KQAL--KKLQAS-----LK---LYA-DDSAPAL 40
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT
structure initiative, midwest center for structural
genomic unknown function; HET: TLA PEG; 1.10A
{Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB:
1zrs_A 2aum_A 2aun_A
Length = 311
Score = 28.9 bits (65), Expect = 1.3
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 28 LAELKTILAGDKIDAVICVAGGW 50
L +L I AV C+ GG+
Sbjct: 69 LEDLHNAFDMPDITAVWCLRGGY 91
Score = 28.9 bits (65), Expect = 1.3
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 150 LAELKTILAGDKIDAVICVAGGW 172
L +L I AV C+ GG+
Sbjct: 69 LEDLHNAFDMPDITAVWCLRGGY 91
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 28.1 bits (62), Expect = 2.2
Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 18/101 (17%)
Query: 119 VGSIDLNPN------DQADANIIVNKDDAWLEQETTVLAELKTILAGDKIDAVICVAGGW 172
V S+D + + D W+ +E L K + AGD DAVIC+
Sbjct: 82 VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICL---- 137
Query: 173 AGGNAAAKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGL 213
GN+ F D QS L A+ ++PGGL
Sbjct: 138 --GNS----FAHLPDSKGDQSEHRLALKN--IASMVRPGGL 170
>3g23_A Peptidase U61, LD-carboxypeptidase A; flavodoxin-like fold,
catalytic triad, merops S66 unassigned peptidases
family; HET: MSE; 1.89A {Novosphingobium
aromaticivorans}
Length = 274
Score = 27.2 bits (60), Expect = 4.2
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 28 LAELKTILAGDKIDAVICVAGGW 50
L+ D +AV V GG+
Sbjct: 57 LSAFLECANDDAFEAVWFVRGGY 79
Score = 27.2 bits (60), Expect = 4.2
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 150 LAELKTILAGDKIDAVICVAGGW 172
L+ D +AV V GG+
Sbjct: 57 LSAFLECANDDAFEAVWFVRGGY 79
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami
diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia
coli} PDB: 2q27_A* 2q29_A*
Length = 564
Score = 27.5 bits (62), Expect = 4.6
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 76 VLAATIAANHLKPGGLVSLPGAKPALEGTPANVDVAMELL 115
VLAAT+ + +V + PAL P +V A+ LL
Sbjct: 170 VLAATMEKDEALTT-IVKVENPSPALLPCPKSVTSAISLL 208
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 26.0 bits (57), Expect = 8.2
Identities = 23/144 (15%), Positives = 46/144 (31%), Gaps = 25/144 (17%)
Query: 77 LAATIAANHLKPGGLVSLPGAKPALEGTPANVDVAMELLYN--WVGSIDLNPNDQADANI 134
++ A L +V ++ T N + L V + D+ QA
Sbjct: 11 MSHDFLAEVLDDESIV--------VDATMGNGNDTAFLAGLSKKVYAFDVQE--QALGKT 60
Query: 135 IVNKDDAWLEQETTVLAELKTI--LAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQ 192
D +E +L + + + I A I ++ SAD
Sbjct: 61 SQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL-----------GYLPSADKSVIT 109
Query: 193 SVWSSVLAATIAANHLKPGGLVSL 216
+++ A + L+ GG +++
Sbjct: 110 KPHTTLEAIEKILDRLEVGGRLAI 133
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR,
TSAR, WHTH, DNA- transcription, transcription
regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A*
3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Length = 305
Score = 26.1 bits (58), Expect = 9.3
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 69 RQSVWSSVLAATIAANHLKPGGLVSLPGAKPALEGT 104
S + + T+ + L S+P T
Sbjct: 234 AHSDLLTTMPRTLYERNAFKDQLCSIPLQDALPNPT 269
Score = 26.1 bits (58), Expect = 9.3
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 191 RQSVWSSVLAATIAANHLKPGGLVSLPGAKPALEGT 226
S + + T+ + L S+P T
Sbjct: 234 AHSDLLTTMPRTLYERNAFKDQLCSIPLQDALPNPT 269
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.394
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,503,671
Number of extensions: 210505
Number of successful extensions: 646
Number of sequences better than 10.0: 1
Number of HSP's gapped: 639
Number of HSP's successfully gapped: 52
Length of query: 227
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 137
Effective length of database: 4,188,903
Effective search space: 573879711
Effective search space used: 573879711
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.1 bits)