RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5125
         (227 letters)



>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli
           [TaxId: 562]}
          Length = 331

 Score = 27.2 bits (59), Expect = 1.8
 Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 10/99 (10%)

Query: 37  GDKIDAVICVAGGWAGGNAAA-----KDFVKSADIMWRQSVWSSVLAATIAANHLKPGGL 91
              +D V    GG  GG AA      K  +    ++  ++  S+ L A + A H      
Sbjct: 173 DAHLDRVFVPVGG--GGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVD--- 227

Query: 92  VSLPGAKPALEGTPANVDVAMELLYNWVGSIDLNPNDQA 130
           +   G            D    L   ++  I    +D  
Sbjct: 228 LPRVGLFAEGVAVKRIGDETFRLCQEYLDDIITVDSDAI 266


>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC
          family {Brevibacterium sterolicum [TaxId: 1702]}
          Length = 370

 Score = 26.8 bits (58), Expect = 2.1
 Identities = 8/26 (30%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 33 TILAGDKIDAVICVAGGWAGGNAAAK 58
          T+  GD++ A++ +  G+ G  AA +
Sbjct: 1  TLADGDRVPALV-IGSGYGGAVAALR 25



 Score = 26.8 bits (58), Expect = 2.1
 Identities = 8/26 (30%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 155 TILAGDKIDAVICVAGGWAGGNAAAK 180
           T+  GD++ A++ +  G+ G  AA +
Sbjct: 1   TLADGDRVPALV-IGSGYGGAVAALR 25


>d1sdwa2 b.121.1.2 (A:199-356) Peptidylglycine alpha-hydroxylating
           monooxygenase, PHM {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 158

 Score = 26.1 bits (57), Expect = 2.3
 Identities = 5/32 (15%), Positives = 12/32 (37%)

Query: 134 IIVNKDDAWLEQETTVLAELKTILAGDKIDAV 165
            ++ + +  L Q    +     +  GD + A 
Sbjct: 63  TLIGRQNPQLPQAFYPVEHPVDVTFGDILAAR 94


>d1zl0a2 c.23.16.7 (A:3-169) LD-carboxypeptidase A, N-terminal
           domain {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 167

 Score = 24.9 bits (54), Expect = 6.5
 Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 16/91 (17%)

Query: 86  LKPGG----LVSLPGAKPALEGTPANVDVAMELLYNWVGSIDLNPNDQADANIIVNKDDA 141
            +P      L++     PA       ++  +  L        L  + +A    +    + 
Sbjct: 9   WQPIDGRVALIA-----PASAIATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQ 63

Query: 142 WLEQETTVLAELKTILAGDKIDAVICVAGGW 172
                   L +L        I AV C+ GG+
Sbjct: 64  -------RLEDLHNAFDMPDITAVWCLRGGY 87



 Score = 24.9 bits (54), Expect = 7.4
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 28 LAELKTILAGDKIDAVICVAGGW 50
          L +L        I AV C+ GG+
Sbjct: 65 LEDLHNAFDMPDITAVWCLRGGY 87


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.394 

Gapped
Lambda     K      H
   0.267   0.0452    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 815,550
Number of extensions: 35136
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 8
Length of query: 227
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 145
Effective length of database: 1,281,736
Effective search space: 185851720
Effective search space used: 185851720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.1 bits)