BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5126
(123 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OOE|A Chain A, Structural Genomics Of Caenorhabditis Elegans :
Dihydropteridine Reductase
pdb|1OOE|B Chain B, Structural Genomics Of Caenorhabditis Elegans :
Dihydropteridine Reductase
Length = 236
Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 72/109 (66%)
Query: 4 SIDLNPNDQADANIIVNKDDAWLEQETTVLAELKTILAGDKIDAVICVXXXXXXXXXXXK 63
+IDL+ NDQAD+NI+V+ + W EQE ++L + + L G ++D V CV K
Sbjct: 32 NIDLSANDQADSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSK 91
Query: 64 DFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAKPALEGTPGM 112
DFVK+AD+M +QSVWSS +AA +A HLKPGGL+ L GA A+ TP M
Sbjct: 92 DFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPTPSM 140
>pdb|1HDR|A Chain A, The Crystallographic Structure Of A Human Dihydropteridine
Reductase Nadh Binary Complex Expressed In Escherichia
Coli By A Cdna Constructed From Its Rat Homologue
Length = 244
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 74/112 (66%)
Query: 1 WVGSIDLNPNDQADANIIVNKDDAWLEQETTVLAELKTILAGDKIDAVICVXXXXXXXXX 60
WV S+D+ N++A A+IIV D++ EQ V AE+ +L +K+DA++CV
Sbjct: 36 WVASVDVVENEEASASIIVKMTDSFTEQADQVTAEVGKLLGEEKVDAILCVAGGWAGGNA 95
Query: 61 XXKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAKPALEGTPGM 112
K K+ D+MW+QS+W+S +++ +A HLK GGL++L GAK AL+GTPGM
Sbjct: 96 KSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTPGM 147
>pdb|1DIR|A Chain A, Crystal Structure Of A Monoclinic Form Of Dihydropteridine
Reductase From Rat Liver
pdb|1DIR|B Chain B, Crystal Structure Of A Monoclinic Form Of Dihydropteridine
Reductase From Rat Liver
pdb|1DIR|C Chain C, Crystal Structure Of A Monoclinic Form Of Dihydropteridine
Reductase From Rat Liver
pdb|1DIR|D Chain D, Crystal Structure Of A Monoclinic Form Of Dihydropteridine
Reductase From Rat Liver
pdb|1DHR|A Chain A, Crystal Structure Of Rat Liver Dihydropteridine Reductase
Length = 241
Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 73/112 (65%)
Query: 1 WVGSIDLNPNDQADANIIVNKDDAWLEQETTVLAELKTILAGDKIDAVICVXXXXXXXXX 60
WV SID+ N++A A++IV D++ EQ V AE+ +L K+DA++CV
Sbjct: 33 WVASIDVVENEEASASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNA 92
Query: 61 XXKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAKPALEGTPGM 112
K K+ D+MW+QS+W+S +++ +A HLK GGL++L GAK AL+GTPGM
Sbjct: 93 KSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTPGM 144
>pdb|3ORF|A Chain A, Crystal Structure Of Dihydropteridine Reductase From
Dictyostelium Discoideum
pdb|3ORF|B Chain B, Crystal Structure Of Dihydropteridine Reductase From
Dictyostelium Discoideum
pdb|3ORF|C Chain C, Crystal Structure Of Dihydropteridine Reductase From
Dictyostelium Discoideum
pdb|3ORF|D Chain D, Crystal Structure Of Dihydropteridine Reductase From
Dictyostelium Discoideum
Length = 251
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 4 SIDLNPNDQADANIIVNKDDAWLEQETTVLAEL--KTILAGDKIDAVICVXXXXXXXXXX 61
SID N AD + + D+ E+ +V+ ++ K+I K+D +C
Sbjct: 51 SIDFRENPNADHSFTIK--DSGEEEIKSVIEKINSKSI----KVDTFVCAAGGWSGGNAS 104
Query: 62 XKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAKPALEGTPGM 112
+F+KS M +++S+ +A I A L GGL L GA AL T GM
Sbjct: 105 SDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALNRTSGM 155
>pdb|1R8X|A Chain A, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Tetragonal Form)
pdb|1R8X|B Chain B, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Tetragonal Form)
pdb|1R8Y|A Chain A, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|B Chain B, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|C Chain C, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|D Chain D, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|E Chain E, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|F Chain F, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|G Chain G, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|H Chain H, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
Length = 292
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 12/75 (16%)
Query: 23 DAWLEQETTVLAELKTILAGDKIDAVICVXXXXXXXXXXXKDFVKSADIMWRQSVWSSVL 82
D W+ +E L K +L+GD DAVIC+ F D QS L
Sbjct: 108 DNWVIEEANWLTLDKDVLSGDGFDAVICL----------GNSFAHLPDCKGDQS--EHRL 155
Query: 83 AATIAANHLKPGGLV 97
A A+ ++PGGL+
Sbjct: 156 ALKNIASMVRPGGLL 170
>pdb|1XVA|A Chain A, Methyltransferase
pdb|1XVA|B Chain B, Methyltransferase
pdb|1BHJ|A Chain A, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1BHJ|B Chain B, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1D2C|A Chain A, Methyltransferase
pdb|1D2C|B Chain B, Methyltransferase
pdb|1NBH|A Chain A, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|B Chain B, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|C Chain C, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|D Chain D, Structure Of Glycine N-Methyltransferase Complexed With S-
Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1KIA|A Chain A, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|B Chain B, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|C Chain C, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|1KIA|D Chain D, Crystal Structure Of Glycine N-Methyltransferase Complexed
With S-Adenosylmethionine And Acetate
pdb|2IDJ|A Chain A, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|B Chain B, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|C Chain C, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|D Chain D, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDK|A Chain A, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|B Chain B, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|C Chain C, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|D Chain D, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
Length = 292
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 12/75 (16%)
Query: 23 DAWLEQETTVLAELKTILAGDKIDAVICVXXXXXXXXXXXKDFVKSADIMWRQSVWSSVL 82
D W+ +E L K + AGD DAVIC+ F D QS L
Sbjct: 108 DKWVIEEANWLTLDKDVPAGDGFDAVICL----------GNSFAHLPDSKGDQS--EHRL 155
Query: 83 AATIAANHLKPGGLV 97
A A+ ++PGGL+
Sbjct: 156 ALKNIASMVRPGGLL 170
>pdb|3THR|A Chain A, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|B Chain B, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|C Chain C, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|D Chain D, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THS|A Chain A, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|B Chain B, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|C Chain C, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|D Chain D, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
Length = 293
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 12/75 (16%)
Query: 23 DAWLEQETTVLAELKTILAGDKIDAVICVXXXXXXXXXXXKDFVKSADIMWRQSVWSSVL 82
D W+ +E L K + AGD DAVIC+ F D QS L
Sbjct: 109 DKWVIEEANWLTLDKDVPAGDGFDAVICL----------GNSFAHLPDSKGDQS--EHRL 156
Query: 83 AATIAANHLKPGGLV 97
A A+ ++PGGL+
Sbjct: 157 ALKNIASMVRPGGLL 171
>pdb|1D2G|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2G|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2H|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|C Chain C, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|D Chain D, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1NBI|A Chain A, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|B Chain B, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|C Chain C, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|D Chain D, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam
Length = 292
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 12/75 (16%)
Query: 23 DAWLEQETTVLAELKTILAGDKIDAVICVXXXXXXXXXXXKDFVKSADIMWRQSVWSSVL 82
D W+ +E L K + AGD DAVIC+ F D QS L
Sbjct: 108 DKWVIEEANWLTLDKDVPAGDGFDAVICL----------GNSFAHLPDSKGDQS--EHRL 155
Query: 83 AATIAANHLKPGGLV 97
A A+ ++PGGL+
Sbjct: 156 ALKNIASMVRPGGLL 170
>pdb|1WCG|A Chain A, Aphid Myrosinase
pdb|1WCG|B Chain B, Aphid Myrosinase
Length = 464
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 6 DLNPNDQADANIIVNKDDAWLEQETT 31
D NPN DA+ + + D+AWL+ T
Sbjct: 319 DPNPNFNPDASYVTSVDEAWLKPNET 344
>pdb|3UCE|A Chain A, Crystal Structure Of A Small-Chain Dehydrogenase In
Complex With Nadph
pdb|3UCE|B Chain B, Crystal Structure Of A Small-Chain Dehydrogenase In
Complex With Nadph
pdb|3UCE|C Chain C, Crystal Structure Of A Small-Chain Dehydrogenase In
Complex With Nadph
pdb|3UCE|D Chain D, Crystal Structure Of A Small-Chain Dehydrogenase In
Complex With Nadph
pdb|3UCF|A Chain A, Crystal Structure Of A Small-chain Dehydrogenase
pdb|3UCF|B Chain B, Crystal Structure Of A Small-chain Dehydrogenase
pdb|3UCF|C Chain C, Crystal Structure Of A Small-chain Dehydrogenase
pdb|3UCF|D Chain D, Crystal Structure Of A Small-chain Dehydrogenase
Length = 223
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 66 VKSADIMWRQSVWSSVLAATIAANHLKPGGLVSL 99
V A + W +VLAA A +LK GG ++L
Sbjct: 81 VTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITL 114
>pdb|1V02|E Chain E, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 4/26 (15%)
Query: 5 IDLNPNDQADANIIVNKDDAWLEQET 30
IDL+PN+ ++N DDA+ QET
Sbjct: 390 IDLSPNNSP----VLNTDDAYASQET 411
>pdb|1V02|A Chain A, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|B Chain B, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|C Chain C, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|D Chain D, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
pdb|1V02|F Chain F, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 4/26 (15%)
Query: 5 IDLNPNDQADANIIVNKDDAWLEQET 30
IDL+PN+ ++N DDA+ QET
Sbjct: 390 IDLSPNNSP----VLNTDDAYASQET 411
>pdb|1V03|A Chain A, Crystal Structure Of The Sorghum Bicolor Dhurrinase 1
Length = 565
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 4/26 (15%)
Query: 5 IDLNPNDQADANIIVNKDDAWLEQET 30
IDL+PN+ ++N DDA+ QET
Sbjct: 390 IDLSPNNSP----VLNTDDAYASQET 411
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 74 RQSVWSSVLAATIAANHLKPGGLVSL---PGAK 103
R WS +A T+ A ++PG V+L PGA+
Sbjct: 65 RLDAWSDAVARTLLAEGVRPGDRVALRMSPGAE 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,492,794
Number of Sequences: 62578
Number of extensions: 106715
Number of successful extensions: 204
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 194
Number of HSP's gapped (non-prelim): 15
length of query: 123
length of database: 14,973,337
effective HSP length: 85
effective length of query: 38
effective length of database: 9,654,207
effective search space: 366859866
effective search space used: 366859866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)