BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5126
(123 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3T0Z7|DHPR_BOVIN Dihydropteridine reductase OS=Bos taurus GN=QDPR PE=2 SV=1
Length = 242
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 84/112 (75%)
Query: 1 WVGSIDLNPNDQADANIIVNKDDAWLEQETTVLAELKTILAGDKIDAVICVAGGWAGGNA 60
WV SID+ N++A AN++V D++ EQ V AE+ +L +K+DA++CVAGGWAGGNA
Sbjct: 34 WVASIDVQENEEASANVVVKMTDSFTEQADQVTAEVGKLLGTEKVDAILCVAGGWAGGNA 93
Query: 61 AAKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAKPALEGTPGM 112
+K K+ D+MW+QSVW+S +++ +A HLK GGL++L GA+ AL+GTPGM
Sbjct: 94 KSKSLFKNCDLMWKQSVWTSTISSHLATKHLKEGGLLTLAGARAALDGTPGM 145
>sp|Q8MJ30|DHPR_PIG Dihydropteridine reductase OS=Sus scrofa GN=QDPR PE=2 SV=1
Length = 243
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 84/112 (75%)
Query: 1 WVGSIDLNPNDQADANIIVNKDDAWLEQETTVLAELKTILAGDKIDAVICVAGGWAGGNA 60
WV SID+ N++A AN++V D++ EQ V AE+ +L +K+DA++CVAGGWAGGNA
Sbjct: 35 WVASIDVVENEEASANVVVKMTDSFTEQADQVTAEVGKLLGTEKVDAILCVAGGWAGGNA 94
Query: 61 AAKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAKPALEGTPGM 112
+K K+ D+MW+QS+W+S +++ +A HLK GGL++L GAK AL+GTPGM
Sbjct: 95 KSKSLFKNCDLMWKQSMWTSTISSHLATKHLKEGGLLTLAGAKAALDGTPGM 146
>sp|P09417|DHPR_HUMAN Dihydropteridine reductase OS=Homo sapiens GN=QDPR PE=1 SV=2
Length = 244
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 84/112 (75%)
Query: 1 WVGSIDLNPNDQADANIIVNKDDAWLEQETTVLAELKTILAGDKIDAVICVAGGWAGGNA 60
WV S+D+ N++A A+IIV D++ EQ V AE+ +L +K+DA++CVAGGWAGGNA
Sbjct: 36 WVASVDVVENEEASASIIVKMTDSFTEQADQVTAEVGKLLGEEKVDAILCVAGGWAGGNA 95
Query: 61 AAKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAKPALEGTPGM 112
+K K+ D+MW+QS+W+S +++ +A HLK GGL++L GAK AL+GTPGM
Sbjct: 96 KSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTPGM 147
>sp|P11348|DHPR_RAT Dihydropteridine reductase OS=Rattus norvegicus GN=Qdpr PE=1 SV=1
Length = 241
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 83/112 (74%)
Query: 1 WVGSIDLNPNDQADANIIVNKDDAWLEQETTVLAELKTILAGDKIDAVICVAGGWAGGNA 60
WV SID+ N++A A++IV D++ EQ V AE+ +L K+DA++CVAGGWAGGNA
Sbjct: 33 WVASIDVVENEEASASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNA 92
Query: 61 AAKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAKPALEGTPGM 112
+K K+ D+MW+QS+W+S +++ +A HLK GGL++L GAK AL+GTPGM
Sbjct: 93 KSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTPGM 144
>sp|Q8BVI4|DHPR_MOUSE Dihydropteridine reductase OS=Mus musculus GN=Qdpr PE=1 SV=2
Length = 241
Score = 126 bits (316), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 83/112 (74%)
Query: 1 WVGSIDLNPNDQADANIIVNKDDAWLEQETTVLAELKTILAGDKIDAVICVAGGWAGGNA 60
WV SID+ N++A A+++V D++ EQ V A++ +L K+DA++CVAGGWAGGNA
Sbjct: 33 WVASIDVVENEEASASVVVKMTDSFTEQADQVTADVGKLLGDQKVDAILCVAGGWAGGNA 92
Query: 61 AAKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAKPALEGTPGM 112
+K K+ D+MW+QS+W+S +++ +A HLK GGL++L GAK AL+GTPGM
Sbjct: 93 KSKSLFKNCDMMWKQSMWTSTISSHLATKHLKEGGLLTLAGAKAALDGTPGM 144
>sp|Q86A17|DHPR_DICDI Dihydropteridine reductase OS=Dictyostelium discoideum GN=qdpr PE=1
SV=1
Length = 231
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 4 SIDLNPNDQADANIIVNKDDAWLEQETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAK 63
SID N AD + + D+ E+ +V+ ++ + K+D +C AGGW+GGNA++
Sbjct: 31 SIDFRENPNADHSFTIK--DSGEEEIKSVIEKINS--KSIKVDTFVCAAGGWSGGNASSD 86
Query: 64 DFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAKPALEGTPGM 112
+F+KS M +++S+ +A I A L GGL L GA AL T GM
Sbjct: 87 EFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALNRTSGM 135
>sp|B4RK82|RLME_NEIG2 Ribosomal RNA large subunit methyltransferase E OS=Neisseria
gonorrhoeae (strain NCCP11945) GN=rlmE PE=3 SV=1
Length = 206
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 28 QETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIA 87
+E VLA+ +T+L +D VIC GNA + +S + LA A
Sbjct: 99 RENDVLAQFETLLDNRPLDLVICDMAPNMSGNAVSDQ---------ARSFYLCELALDFA 149
Query: 88 ANHLKPGG 95
+ HLK GG
Sbjct: 150 SQHLKTGG 157
>sp|Q5F9L0|RLME_NEIG1 Ribosomal RNA large subunit methyltransferase E OS=Neisseria
gonorrhoeae (strain ATCC 700825 / FA 1090) GN=rlmE PE=3
SV=1
Length = 206
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 28 QETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIA 87
+E VLA+ +T+L +D VIC GNA + +S + LA A
Sbjct: 99 RENDVLAQFETLLDNRPLDLVICDMAPNMSGNAVSDQ---------ARSFYLCELALDFA 149
Query: 88 ANHLKPGG 95
+ HLK GG
Sbjct: 150 SQHLKTGG 157
>sp|Q7DDL2|RLME_NEIMB Ribosomal RNA large subunit methyltransferase E OS=Neisseria
meningitidis serogroup B (strain MC58) GN=rlmE PE=3 SV=1
Length = 206
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 28 QETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIA 87
+E VLA+ +T+L +D VIC GNA + +S + LA A
Sbjct: 99 RENDVLAQFETLLDNRPLDLVICDMAPNMSGNAVSDQ---------ARSFYLCELALDFA 149
Query: 88 ANHLKPGG 95
+ HLK GG
Sbjct: 150 SQHLKTGG 157
>sp|Q9JQX5|RLME_NEIMA Ribosomal RNA large subunit methyltransferase E OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=rlmE PE=3 SV=1
Length = 206
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 28 QETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIA 87
+E VLA+ +T+L +D VIC GNA + +S + LA A
Sbjct: 99 RENDVLAQFETLLDNRPLDLVICDMAPNMSGNAVSDQ---------ARSFYLCELALDFA 149
Query: 88 ANHLKPGG 95
+ HLK GG
Sbjct: 150 SQHLKTGG 157
>sp|A9M3N1|RLME_NEIM0 Ribosomal RNA large subunit methyltransferase E OS=Neisseria
meningitidis serogroup C (strain 053442) GN=rlmE PE=3
SV=1
Length = 206
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 28 QETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIA 87
+E VLA+ +T+L +D VIC GNA + +S + LA A
Sbjct: 99 RENDVLAQFETLLDNRPLDLVICDMAPNMSGNAVSDQ---------ARSFYLCELALDFA 149
Query: 88 ANHLKPGG 95
+ HLK GG
Sbjct: 150 SQHLKTGG 157
>sp|Q5P1G0|RLME_AROAE Ribosomal RNA large subunit methyltransferase E OS=Aromatoleum
aromaticum (strain EbN1) GN=rlmE PE=3 SV=1
Length = 207
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 28 QETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIA 87
QE VLAEL++ L G +D V+ N + D A +S++ LA A
Sbjct: 98 QEEPVLAELESRLGGLPVDVVLSDMAP----NMSGIDTTDQA-----RSIYLGELALEFA 148
Query: 88 ANHLKPGG 95
+HLKPGG
Sbjct: 149 GHHLKPGG 156
>sp|A1K598|RLME_AZOSB Ribosomal RNA large subunit methyltransferase E OS=Azoarcus sp.
(strain BH72) GN=rlmE PE=3 SV=1
Length = 205
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 29 ETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIAA 88
E VLAEL++ LAG +D V+ + A + A + +S++ LA A
Sbjct: 99 EDAVLAELESRLAGAAVDLVL---------SDMAPNLSGVATVDQARSIYLCELALDFAR 149
Query: 89 NHLKPGG 95
HLKPGG
Sbjct: 150 RHLKPGG 156
>sp|A4G4B0|RLME_HERAR Ribosomal RNA large subunit methyltransferase E OS=Herminiimonas
arsenicoxydans GN=rlmE PE=3 SV=1
Length = 214
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 28 QETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIA 87
+E VL +L+ +LAG K+D V+ G A A D + DI+ LA A
Sbjct: 104 REQNVLEQLEVVLAGRKVDLVLSDMAPNLSGIAVA-DAARMMDIIE--------LAIDFA 154
Query: 88 ANHLKPGG 95
+H+KP G
Sbjct: 155 QHHMKPSG 162
>sp|Q5PAE9|GPMI_ANAMM 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
OS=Anaplasma marginale (strain St. Maries) GN=gpmI PE=3
SV=2
Length = 494
Score = 32.7 bits (73), Expect = 0.76, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 48 VICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIAANHLKPGGLVSLPGAK 103
V+C+ GW GN D + +A R+ W SV++ ++ G V LP A+
Sbjct: 7 VLCILDGWGNGNGDECDAIHAA----RKPFWESVVSGCPRSSLSASGEDVGLPAAQ 58
>sp|Q2SUW0|RLME_BURTA Ribosomal RNA large subunit methyltransferase E OS=Burkholderia
thailandensis (strain E264 / ATCC 700388 / DSM 13276 /
CIP 106301) GN=rlmE PE=3 SV=1
Length = 220
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 11/69 (15%)
Query: 28 QETTVLAELKTILAGDKIDAVIC-VAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATI 86
+E TVL +L+ +LAG +D VI +A +G V AD + V LA
Sbjct: 110 REETVLHQLEEVLAGRSVDLVISDMAPNLSG--------VAVADAARIEHVCD--LALEF 159
Query: 87 AANHLKPGG 95
A NHLKP G
Sbjct: 160 AQNHLKPDG 168
>sp|Q9QXF8|GNMT_MOUSE Glycine N-methyltransferase OS=Mus musculus GN=Gnmt PE=1 SV=3
Length = 293
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 23 DAWLEQETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVL 82
D W+ +E L K +L+GD DAVIC+ GN+ F D QS L
Sbjct: 109 DNWVIEEANWLTLDKDVLSGDGFDAVICL------GNS----FAHLPDCKGDQS--EHRL 156
Query: 83 AATIAANHLKPGGLV 97
A A+ ++PGGL+
Sbjct: 157 ALKNIASMVRPGGLL 171
>sp|O34851|LDC_BACSU Probable murein peptide carboxypeptidase OS=Bacillus subtilis
(strain 168) GN=ykfA PE=2 SV=2
Length = 319
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 28 QETTVLAELKTILAGDKIDAVICVAGGWAGGN-AAAKDF---VKSADIMWRQS 76
Q+ LA+L + D++ AV+C GG+ G AA DF K I W S
Sbjct: 64 QDDERLADLHEMFRDDEVKAVLCACGGFGTGRIAAGIDFSLIRKHPKIFWGYS 116
>sp|A1KT57|RLME_NEIMF Ribosomal RNA large subunit methyltransferase E OS=Neisseria
meningitidis serogroup C / serotype 2a (strain ATCC
700532 / FAM18) GN=rlmE PE=3 SV=1
Length = 206
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 9/68 (13%)
Query: 28 QETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVLAATIA 87
+E VLA+ + +L +D VIC GNA + +S + LA A
Sbjct: 99 RENDVLAQFEGLLNNRPLDLVICDMAPNMSGNAVSDQ---------ARSFYLCELALDFA 149
Query: 88 ANHLKPGG 95
+ HLK GG
Sbjct: 150 SQHLKTGG 157
>sp|P13255|GNMT_RAT Glycine N-methyltransferase OS=Rattus norvegicus GN=Gnmt PE=1 SV=2
Length = 293
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 12/75 (16%)
Query: 23 DAWLEQETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWSSVL 82
D W+ +E L K + AGD DAVIC+ GN+ F D QS L
Sbjct: 109 DKWVIEEANWLTLDKDVPAGDGFDAVICL------GNS----FAHLPDSKGDQS--EHRL 156
Query: 83 AATIAANHLKPGGLV 97
A A+ ++PGGL+
Sbjct: 157 ALKNIASMVRPGGLL 171
>sp|Q043G6|ADDA_LACGA ATP-dependent helicase/nuclease subunit A OS=Lactobacillus gasseri
(strain ATCC 33323 / DSM 20243) GN=addA PE=3 SV=1
Length = 1204
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 20 NKDDAWLEQETTVLAELKTILAGDKIDAVICVAGGWAGGNAAAKDFVKSADIMWRQSVWS 79
NKD L+QE L EL L + + A W + AK+F K D + R+S +S
Sbjct: 1048 NKDQENLDQEIDQLVELGK-LNSLMVPHLSKEALNWFVMSDFAKEFWKQPDKLHRESQFS 1106
Query: 80 SVLAATIAANHLKPGGLVSLPGAKPALEGTPGMYL 114
S++ A+ N S P AK + GT Y
Sbjct: 1107 SLVNASELFNDF------SDPSAKVLVHGTVDGYF 1135
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,365,407
Number of Sequences: 539616
Number of extensions: 1816200
Number of successful extensions: 5463
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 5448
Number of HSP's gapped (non-prelim): 26
length of query: 123
length of database: 191,569,459
effective HSP length: 90
effective length of query: 33
effective length of database: 143,004,019
effective search space: 4719132627
effective search space used: 4719132627
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)