RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5126
         (123 letters)



>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC
          family {Brevibacterium sterolicum [TaxId: 1702]}
          Length = 370

 Score = 26.8 bits (58), Expect = 0.85
 Identities = 8/26 (30%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 38 TILAGDKIDAVICVAGGWAGGNAAAK 63
          T+  GD++ A++ +  G+ G  AA +
Sbjct: 1  TLADGDRVPALV-IGSGYGGAVAALR 25


>d1sdwa2 b.121.1.2 (A:199-356) Peptidylglycine alpha-hydroxylating
          monooxygenase, PHM {Rat (Rattus norvegicus) [TaxId:
          10116]}
          Length = 158

 Score = 25.7 bits (56), Expect = 1.5
 Identities = 5/32 (15%), Positives = 12/32 (37%)

Query: 17 IIVNKDDAWLEQETTVLAELKTILAGDKIDAV 48
           ++ + +  L Q    +     +  GD + A 
Sbjct: 63 TLIGRQNPQLPQAFYPVEHPVDVTFGDILAAR 94


>d1zl0a2 c.23.16.7 (A:3-169) LD-carboxypeptidase A, N-terminal
          domain {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 167

 Score = 24.5 bits (53), Expect = 3.2
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 33 LAELKTILAGDKIDAVICVAGGW 55
          L +L        I AV C+ GG+
Sbjct: 65 LEDLHNAFDMPDITAVWCLRGGY 87


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.415 

Gapped
Lambda     K      H
   0.267   0.0452    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 457,765
Number of extensions: 18202
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 9
Length of query: 123
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 48
Effective length of database: 1,377,846
Effective search space: 66136608
Effective search space used: 66136608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.6 bits)