BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5127
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 95.1 bits (235), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 71/116 (61%), Gaps = 3/116 (2%)
Query: 12 TLDRDVIKPQDVKDVLSVVASNPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTS 71
TL+ D+I+ QD + + +N G L W ++++WK L N +G G+FS LI VT
Sbjct: 784 TLNPDLIRKQDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTR 843
Query: 72 HFSAPYDLHEVKAFFKDMD---VGSGARSLEQSLETIELNIHWVRRNEELIFQWLS 124
FS Y+L +++ F KD + GSG R+LEQ+LE + NI WV+ N+E++ QW +
Sbjct: 844 RFSTEYELQQLEQFKKDNEETGFGSGTRALEQALEKTKANIKWVKENKEVVLQWFT 899
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 74/115 (64%), Gaps = 3/115 (2%)
Query: 12 TLDRDVIKPQDVKDVLSVVASNPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTS 71
TL+ D+I+ QD ++ +ASN G LAW ++++WK L +G G+FS LI VT
Sbjct: 783 TLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTR 842
Query: 72 HFSAPYDLHEVKAFFK-DMDV--GSGARSLEQSLETIELNIHWVRRNEELIFQWL 123
FS+ ++L +++ F K +MDV GSG R+LEQ+LE + NI WV+ N+E++ W
Sbjct: 843 RFSSEFELQQLEQFKKNNMDVGFGSGTRALEQALEKTKANIKWVKENKEVVLNWF 897
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 74/115 (64%), Gaps = 3/115 (2%)
Query: 12 TLDRDVIKPQDVKDVLSVVASNPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTS 71
TL+ D+I+ QD ++ +ASN G LAW ++++WK L +G G+FS LI VT
Sbjct: 784 TLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTR 843
Query: 72 HFSAPYDLHEVKAFFK-DMDV--GSGARSLEQSLETIELNIHWVRRNEELIFQWL 123
FS+ ++L +++ F K +MDV GSG R+LEQ+LE + NI WV+ N+E++ W
Sbjct: 844 RFSSEFELQQLEQFKKNNMDVGFGSGTRALEQALEKTKANIKWVKENKEVVLNWF 898
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 74/115 (64%), Gaps = 3/115 (2%)
Query: 12 TLDRDVIKPQDVKDVLSVVASNPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTS 71
TL+ D+I+ QD ++ +ASN G LAW ++++WK L +G G+FS LI VT
Sbjct: 783 TLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTR 842
Query: 72 HFSAPYDLHEVKAFFK-DMDV--GSGARSLEQSLETIELNIHWVRRNEELIFQWL 123
FS+ ++L +++ F K +MDV GSG R+LEQ+LE + NI WV+ N+E++ W
Sbjct: 843 RFSSEFELQQLEQFKKNNMDVGFGSGTRALEQALEKTKANIKWVKENKEVVLNWF 897
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 74/115 (64%), Gaps = 3/115 (2%)
Query: 12 TLDRDVIKPQDVKDVLSVVASNPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTS 71
TL+ D+I+ QD ++ +ASN G LAW ++++WK L +G G+FS LI VT
Sbjct: 827 TLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTR 886
Query: 72 HFSAPYDLHEVKAFFK-DMDV--GSGARSLEQSLETIELNIHWVRRNEELIFQWL 123
FS+ ++L +++ F K +MDV GSG R+LEQ+LE + NI WV+ N+E++ W
Sbjct: 887 RFSSEFELQQLEQFKKNNMDVGFGSGTRALEQALEKTKANIKWVKENKEVVLNWF 941
>pdb|3RJO|A Chain A, Crystal Structure Of Erap1 Peptide Binding Domain
Length = 419
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 16 DVIKPQDVKDVLSVVASNPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTSHFSA 75
D IK Q+ +L+++ NP G LAW+ L+ +W L F G+ S+ ++ T+ FS
Sbjct: 297 DKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFST 356
Query: 76 PYDLHEVKAFFKDM-DVGSGARSLEQSLETIELNIHWVRRNEELIFQWLSS 125
L EVK FF + + GS R ++Q++ETIE NI W+ +N + I WL S
Sbjct: 357 RTRLEEVKGFFSSLKENGSQLRCVQQTIETIEENIGWMDKNFDKIRVWLQS 407
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 16 DVIKPQDVKDVLSVVASNPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTSHFSA 75
D IK Q+ +L+++ NP G LAW+ L+ +W L F G+ S+ ++ T+ FS
Sbjct: 831 DKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFST 890
Query: 76 PYDLHEVKAFFKDM-DVGSGARSLEQSLETIELNIHWVRRNEELIFQWLSS 125
L EVK FF + + GS R ++Q++ETIE NI W+ +N + I WL S
Sbjct: 891 RTRLEEVKGFFSSLKENGSQLRCVQQTIETIEENIGWMDKNFDKIRVWLQS 941
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 16 DVIKPQDVKDVLSVVASNPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTSHFSA 75
D IK Q+ +L+++ NP G LAW+ L+ +W L F G+ S+ ++ T+ FS
Sbjct: 789 DKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFST 848
Query: 76 PYDLHEVKAFFKDM-DVGSGARSLEQSLETIELNIHWVRRNEELIFQWLSS 125
L EVK FF + + GS R ++Q++ETIE NI W+ +N + I WL S
Sbjct: 849 RTRLEEVKGFFSSLKENGSQLRCVQQTIETIEENIGWMDKNFDKIRVWLQS 899
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
Endoplasmic Reticulum Aminopeptidase 1 Erap1
Length = 897
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 64/111 (57%), Gaps = 1/111 (0%)
Query: 16 DVIKPQDVKDVLSVVASNPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTSHFSA 75
D IK Q+ +L+++ NP G LAW+ L+ +W L F G+ S+ ++ T+ FS
Sbjct: 780 DKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFST 839
Query: 76 PYDLHEVKAFFKDM-DVGSGARSLEQSLETIELNIHWVRRNEELIFQWLSS 125
L EVK FF + + GS R ++Q++ETIE NI W+ +N + I WL S
Sbjct: 840 RTRLEEVKGFFSSLKENGSQLRCVQQTIETIEENIGWMDKNFDKIRVWLQS 890
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 13 LDRDVIKPQDVKDVLSVVASNPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTSH 72
++ VIK Q++ +L +A P+G LAW ++ +W L F G++ + +I T+H
Sbjct: 845 MEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTTAH 904
Query: 73 FSAPYDLHEVKAFFKDMDV-GSGARSLEQSLETIELNIHWVRRNEELIFQWL 123
FS+ L EVK FF+ ++ GS + LETI NI W+ +N + WL
Sbjct: 905 FSSKDKLQEVKLFFESLEAQGSHLDIFQTVLETITKNIKWLEKNLPTLRTWL 956
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 13 LDRDVIKPQDVKDVLSVVASNPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTSH 72
++ VIK Q++ +L +A P+G LAW ++ +W L F G++ + +I T+H
Sbjct: 845 MEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTTAH 904
Query: 73 FSAPYDLHEVKAFFKDMDV-GSGARSLEQSLETIELNIHWVRRNEELIFQWL 123
FS+ L EVK FF+ ++ GS + LETI NI W+ +N + WL
Sbjct: 905 FSSKDKLQEVKLFFESLEAQGSHLDIFQTVLETITKNIKWLEKNLPTLRTWL 956
>pdb|2NT4|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Prot (H92f Mutant)
Length = 127
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 19 KPQDVKDVLSVVASNPEGNFLAWRHLKAH 47
K D+K+V V+ NP+G F +R LKAH
Sbjct: 74 KDDDLKNVPIVIIGNPDG-FAQFRKLKAH 101
>pdb|2DLC|X Chain X, Crystal Structure Of The Ternary Complex Of Yeast
Tyrosyl-Trna Synthetase
Length = 394
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 12/43 (27%)
Query: 6 GLLAKSTLDRDVIKPQDVKDVLSVVASNPEGNFLAWRHLKAHW 48
GL+ K+ ++V+ PQ +KDVL V RHLK +W
Sbjct: 14 GLITKNL--QEVLNPQIIKDVLEVQK----------RHLKLYW 44
>pdb|1MIO|B Chain B, X-Ray Crystal Structure Of The Nitrogenase Molybdenum-Iron
Protein From Clostridium Pasteurianum At 3.0 Angstroms
Resolution
pdb|1MIO|D Chain D, X-Ray Crystal Structure Of The Nitrogenase Molybdenum-Iron
Protein From Clostridium Pasteurianum At 3.0 Angstroms
Resolution
Length = 458
Score = 27.3 bits (59), Expect = 2.6, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 49 KGLQNLFGNGTFSMGALIGVVTSHFSAPYDLHEVKAFFKDMDV 91
+G+ N T + I V+ F P D+ E+K F+ MD+
Sbjct: 155 QGIVNYLSENTGAKNGKINVIPG-FVGPADMREIKRLFEAMDI 196
>pdb|2GKG|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Prot
pdb|2I6F|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs
pdb|2I6F|B Chain B, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs
pdb|2I6F|C Chain C, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs
Length = 127
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 19 KPQDVKDVLSVVASNPEGNFLAWRHLKAH 47
K D+K+V V+ NP+G F R LKAH
Sbjct: 74 KDDDLKNVPIVIIGNPDG-FAQHRKLKAH 101
>pdb|2NT3|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs (Y102a Mutant)
Length = 127
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 19 KPQDVKDVLSVVASNPEGNFLAWRHLKAH 47
K D+K+V V+ NP+G F R LKAH
Sbjct: 74 KDDDLKNVPIVIIGNPDG-FAQHRKLKAH 101
>pdb|3MGU|A Chain A, Saccharomyces Cerevisiae Tpa1
Length = 644
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 57 NGTFSMGALIGVVTSHFSAPYD------LHEVKAFFKDMDVGSGARSLEQSLETIELNIH 110
N T ++ + V F P D HEVK F K + +GA++ E++ I
Sbjct: 266 NNTSTLAQIESNVLEDFEFPKDERNILSFHEVKHFEKMLKGDAGAKTDNTPKESMTSVIS 325
Query: 111 WVRRNEELIFQWLSSYL 127
+ E F +LS Y+
Sbjct: 326 DSVKLSEAEFTYLSQYI 342
>pdb|3KT7|A Chain A, Crystal Structure Of Tpa1 From Saccharomyces Cerevisiae, A
Component Of The Messenger Ribonucleoprotein Complex
Length = 633
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 57 NGTFSMGALIGVVTSHFSAPYD------LHEVKAFFKDMDVGSGARSLEQSLETIELNIH 110
N T ++ + V F P D HEVK F K + +GA++ E++ I
Sbjct: 247 NNTSTLAQIESNVLEDFEFPKDERNILSFHEVKHFEKMLKGDAGAKTDNTPKESMTSVIS 306
Query: 111 WVRRNEELIFQWLSSYL 127
+ E F +LS Y+
Sbjct: 307 DSVKLSEAEFTYLSQYI 323
>pdb|3QE5|A Chain A, Complete Structure Of Streptococcus Mutans Antigen III
CARBOXY- Terminus
pdb|3QE5|B Chain B, Complete Structure Of Streptococcus Mutans Antigen III
CARBOXY- Terminus
Length = 516
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 20 PQDVKDVLSVVASNPEGNFLAWR 42
PQ+++DVLS P+G F +R
Sbjct: 272 PQEIRDVLSKAGIRPKGAFQIFR 294
>pdb|3QLJ|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase From
Mycobacterium Avium
pdb|3QLJ|B Chain B, Crystal Structure Of A Short Chain Dehydrogenase From
Mycobacterium Avium
pdb|3QLJ|C Chain C, Crystal Structure Of A Short Chain Dehydrogenase From
Mycobacterium Avium
pdb|3QLJ|D Chain D, Crystal Structure Of A Short Chain Dehydrogenase From
Mycobacterium Avium
pdb|3QLJ|E Chain E, Crystal Structure Of A Short Chain Dehydrogenase From
Mycobacterium Avium
pdb|3QLJ|F Chain F, Crystal Structure Of A Short Chain Dehydrogenase From
Mycobacterium Avium
Length = 322
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 28 SVVASNPEGNFLAWRHLKAHWKGL 51
+V+A + +G+F RH A+W+GL
Sbjct: 140 AVIAVHLKGHFATMRHAAAYWRGL 163
>pdb|3KT1|A Chain A, Crystal Structure Of Tpa1 From Saccharomyces Cerevisiae, A
Component Of The Messenger Ribonucleoprotein Complex
Length = 633
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 57 NGTFSMGALIGVVTSHFSAPYD------LHEVKAFFKDMDVGSGARSLEQSLETIELNIH 110
N T ++ + V F P D HEVK F K + +GA++ E++ I
Sbjct: 247 NNTSTLAQIESNVLEDFEFPKDERNILSFHEVKHFEKMLKGDAGAKTDNTPKESMTSVIS 306
Query: 111 WVRRNEELIFQWLSSYL 127
+ E F +LS Y+
Sbjct: 307 DSVKLSEAEFTYLSQYI 323
>pdb|3OPU|A Chain A, Crystal Structure Of The C-Terminal Domain Of
Streptococcus Mutans Surface Protein Spap
pdb|3OPU|B Chain B, Crystal Structure Of The C-Terminal Domain Of
Streptococcus Mutans Surface Protein Spap
pdb|3OPU|C Chain C, Crystal Structure Of The C-Terminal Domain Of
Streptococcus Mutans Surface Protein Spap
pdb|3OPU|D Chain D, Crystal Structure Of The C-Terminal Domain Of
Streptococcus Mutans Surface Protein Spap
pdb|3OPU|E Chain E, Crystal Structure Of The C-Terminal Domain Of
Streptococcus Mutans Surface Protein Spap
pdb|3OPU|F Chain F, Crystal Structure Of The C-Terminal Domain Of
Streptococcus Mutans Surface Protein Spap
Length = 339
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 20 PQDVKDVLSVVASNPEGNFLAWR 42
PQ+++DVLS P+G F +R
Sbjct: 96 PQEIRDVLSKAGIRPKGAFQIFR 118
>pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGO|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGP|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGQ|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|2PGD|A Chain A, The Structure Of 6-Phosphogluconate Dehydrogenase Refined
At 2 Angstroms Resolution
Length = 482
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 34 PEGNFLAWRHLKAHWKGLQNLFGNG 58
P GN AW H+KA ++G+ G G
Sbjct: 142 PGGNKEAWPHIKAIFQGIAAKVGTG 166
>pdb|1R6A|A Chain A, Structure Of The Dengue Virus 2'o Methyltransferase In
Complex With S-Adenosyl Homocysteine And Ribavirin 5'
Triphosphate
Length = 295
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 51 LQNLFGNGTFSMGALIGVVTSHFSAPYDLHEVKAFFKDMDVGSGARSLEQSLETIELNI 109
+ N GN S+ + ++ + F+ H+ + D+D+GSG R++ ET L+I
Sbjct: 220 VSNASGNIVSSVNMISRMLINRFTM---RHKKATYEPDVDLGSGTRNIGIESETPNLDI 275
>pdb|2O2H|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With
1,2-Dichloroethane
pdb|2O2I|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis Complexed With
1,3-Propandiol
Length = 300
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 25 DVLSVVASNPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGA 64
D + NP ++L WR++ H +GL L MGA
Sbjct: 31 DAIVFQHGNPTSSYL-WRNIMPHLEGLGRLVACDLIGMGA 69
>pdb|1L9K|A Chain A, Dengue Methyltransferase
pdb|2P1D|A Chain A, Crystal Structure Of Dengue Methyltransferase In Complex
With Gtp And S-Adenosyl-L-Homocysteine
pdb|2P3L|A Chain A, Crystal Structure Of Dengue Methyltransferase In Complex
With Gpppa And S-Adenosyl-L-Homocysteine
pdb|2P3O|A Chain A, Crystal Structure Of Dengue Methyltransferase In Complex
With 7megpppa And S-adenosyl-l-homocysteine
pdb|2P3Q|A Chain A, Crystal Structure Of Dengue Methyltransferase In Complex
With Gpppg And S-Adenosyl-L-Homocysteine
pdb|2P40|A Chain A, Crystal Structure Of Dengue Methyltransferase In Complex
With 7megpppg
pdb|2P41|A Chain A, Crystal Structure Of Dengue Methyltransferase In Complex
With 7megpppg2'ome And S-Adenosyl-L-Homocysteine
Length = 305
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 51 LQNLFGNGTFSMGALIGVVTSHFSAPYDLHEVKAFFKDMDVGSGARSLEQSLETIELNI 109
+ N GN S+ + ++ + F+ H+ + D+D+GSG R++ ET L+I
Sbjct: 230 VSNASGNIVSSVNMISRMLINRFTM---RHKKATYEPDVDLGSGTRNIGIESETPNLDI 285
>pdb|2QVB|A Chain A, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
pdb|2QVB|B Chain B, Crystal Structure Of Haloalkane Dehalogenase Rv2579 From
Mycobacterium Tuberculosis
Length = 297
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 25 DVLSVVASNPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGA 64
D + NP ++L WR++ H +GL L MGA
Sbjct: 29 DAIVFQHGNPTSSYL-WRNIMPHLEGLGRLVACDLIGMGA 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,986,488
Number of Sequences: 62578
Number of extensions: 162988
Number of successful extensions: 421
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 395
Number of HSP's gapped (non-prelim): 27
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)