Query psy5127
Match_columns 128
No_of_seqs 110 out of 1043
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 18:01:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5127.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5127hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11838 ERAP1_C: ERAP1-like C 99.7 8.9E-18 1.9E-22 120.6 9.5 105 2-106 217-324 (324)
2 KOG1046|consensus 99.7 8.9E-17 1.9E-21 128.3 14.1 125 2-127 757-881 (882)
3 TIGR02412 pepN_strep_liv amino 99.2 3.6E-10 7.7E-15 90.6 11.1 110 3-113 717-830 (831)
4 COG0308 PepN Aminopeptidase N 96.9 0.0041 8.9E-08 50.8 7.4 111 4-115 743-856 (859)
5 PF10805 DUF2730: Protein of u 93.5 0.7 1.5E-05 28.2 6.7 76 40-118 1-90 (106)
6 PF03715 Noc2: Noc2p family; 84.9 2.6 5.6E-05 30.6 4.9 45 80-124 228-282 (299)
7 PF13124 DUF3963: Protein of u 76.3 3.5 7.7E-05 19.9 2.2 19 107-125 4-22 (40)
8 PF06685 DUF1186: Protein of u 74.2 22 0.00048 25.2 6.6 71 18-91 129-199 (249)
9 cd08330 CARD_ASC_NALP1 Caspase 71.0 18 0.00038 20.9 6.2 38 43-84 2-40 (82)
10 PF14165 YtzH: YtzH-like prote 70.9 19 0.00041 21.2 5.1 55 71-125 20-85 (87)
11 TIGR01321 TrpR trp operon repr 64.8 21 0.00045 21.4 4.2 80 46-127 7-94 (94)
12 PF05596 Taeniidae_ag: Taeniid 60.9 27 0.00058 19.3 5.9 48 76-125 13-60 (64)
13 cd05133 RasGAP_IQGAP1 IQGAP1 i 49.8 54 0.0012 24.6 5.2 100 25-127 136-247 (360)
14 COG3251 Uncharacterized protei 49.0 12 0.00025 21.0 1.2 22 31-52 39-60 (71)
15 PHA00440 host protein H-NS-int 49.0 48 0.001 19.9 3.9 36 3-38 24-62 (98)
16 PF15467 SGIII: Secretogranin- 48.9 13 0.00029 27.7 1.8 18 98-115 390-407 (453)
17 PF00046 Homeobox: Homeobox do 48.5 38 0.00083 17.4 5.9 20 73-92 6-25 (57)
18 PF11829 DUF3349: Protein of u 46.1 65 0.0014 19.4 6.6 85 1-90 1-89 (96)
19 PF10281 Ish1: Putative stress 45.8 32 0.00068 16.6 2.4 29 80-108 7-37 (38)
20 PF09554 RE_HaeII: HaeII restr 43.1 1.3E+02 0.0028 21.9 6.8 87 8-107 69-156 (338)
21 PF10691 DUF2497: Protein of u 43.0 16 0.00036 20.7 1.3 11 111-121 50-60 (73)
22 PF11247 DUF2675: Protein of u 42.1 66 0.0014 19.4 3.8 36 3-38 24-62 (98)
23 PRK01381 Trp operon repressor; 41.9 44 0.00095 20.2 3.0 80 46-127 7-94 (99)
24 PF06363 Picorna_P3A: Picornav 40.4 81 0.0018 18.8 4.7 12 79-90 18-29 (100)
25 PF14726 RTTN_N: Rotatin, an a 39.4 73 0.0016 19.1 3.8 40 3-42 30-69 (98)
26 KOG2256|consensus 38.2 55 0.0012 26.6 3.8 38 80-117 542-579 (661)
27 cd08306 Death_FADD Fas-associa 37.1 85 0.0019 18.1 5.7 63 42-105 10-72 (86)
28 cd04436 DEP_fRgd2 DEP (Disheve 36.1 41 0.00088 19.7 2.2 42 2-49 3-44 (84)
29 COG3935 DnaD Putative primosom 34.8 1.1E+02 0.0024 21.7 4.6 54 71-127 139-194 (246)
30 PF07261 DnaB_2: Replication i 34.1 66 0.0014 17.6 2.9 19 71-89 10-28 (77)
31 PF12238 MSA-2c: Merozoite sur 32.7 1.7E+02 0.0037 20.2 5.5 56 70-127 38-94 (205)
32 cd08784 Death_DRs Death Domain 31.6 1E+02 0.0022 17.4 4.9 59 46-106 12-70 (79)
33 PF13496 DUF4120: Domain of un 30.4 1.2E+02 0.0026 17.8 3.7 29 75-107 4-32 (95)
34 PF09832 DUF2059: Uncharacteri 30.1 94 0.002 16.5 4.0 24 64-88 8-31 (64)
35 TIGR01446 DnaD_dom DnaD and ph 29.6 1E+02 0.0022 16.8 5.5 54 71-127 10-65 (73)
36 TIGR02284 conserved hypothetic 28.7 1.6E+02 0.0034 18.7 9.2 80 31-114 57-137 (139)
37 cd08785 CARD_CARD9-like Caspas 28.6 1.3E+02 0.0027 17.6 3.5 23 6-28 19-41 (86)
38 PF02885 Glycos_trans_3N: Glyc 28.4 1.1E+02 0.0023 16.6 3.3 39 6-44 3-41 (66)
39 cd08329 CARD_BIRC2_BIRC3 Caspa 28.2 1.3E+02 0.0029 17.7 6.6 40 42-84 9-48 (94)
40 KOG1756|consensus 27.5 1.4E+02 0.003 19.0 3.7 22 32-53 49-70 (131)
41 PF03965 Penicillinase_R: Peni 26.8 1.5E+02 0.0033 17.8 5.2 43 43-87 71-114 (115)
42 smart00389 HOX Homeodomain. DN 26.6 98 0.0021 15.6 5.2 19 74-92 7-25 (56)
43 cd05130 RasGAP_Neurofibromin N 26.5 1.3E+02 0.0029 22.2 4.1 94 27-127 149-252 (329)
44 PF05106 Phage_holin_3: Phage 25.4 97 0.0021 18.6 2.7 21 32-52 3-23 (100)
45 PF12875 DUF3826: Protein of u 25.1 1E+02 0.0022 20.9 2.9 22 105-126 150-171 (188)
46 PRK04654 sec-independent trans 25.1 2.4E+02 0.0053 19.6 5.1 15 73-87 50-64 (214)
47 PF09337 zf-H2C2: His(2)-Cys(2 24.2 81 0.0018 15.4 1.8 27 97-124 7-33 (39)
48 TIGR00293 prefoldin, archaeal 23.4 67 0.0014 19.8 1.8 50 70-124 75-124 (126)
49 PF00619 CARD: Caspase recruit 23.4 1.5E+02 0.0032 16.5 5.0 40 41-84 1-41 (85)
50 PF08336 P4Ha_N: Prolyl 4-Hydr 23.3 2E+02 0.0043 18.0 4.2 25 32-56 57-81 (134)
51 PF15572 Imm26: Immunity prote 22.5 49 0.0011 19.9 1.0 17 35-51 68-84 (96)
52 COG2231 Uncharacterized protei 22.3 2.5E+02 0.0053 19.6 4.4 11 5-15 128-138 (215)
53 PF13808 DDE_Tnp_1_assoc: DDE_ 22.1 1.8E+02 0.0038 16.9 5.4 30 28-57 30-59 (90)
54 TIGR01565 homeo_ZF_HD homeobox 22.0 1.1E+02 0.0023 16.5 2.2 18 74-91 8-25 (58)
55 smart00139 MyTH4 Domain in Myo 22.0 2.3E+02 0.0049 18.1 4.9 32 4-35 47-78 (144)
56 PF12335 SBF2: Myotubularin pr 21.7 61 0.0013 22.7 1.5 48 3-50 25-72 (225)
57 PF09432 THP2: Tho complex sub 21.5 1.5E+02 0.0032 18.9 3.0 28 42-69 95-123 (132)
58 PF11887 DUF3407: Protein of u 21.5 3.1E+02 0.0067 19.5 6.5 40 18-57 10-49 (267)
59 PF08569 Mo25: Mo25-like; Int 21.0 3.6E+02 0.0078 20.1 6.1 36 20-55 93-130 (335)
60 PF03564 DUF1759: Protein of u 20.5 2.3E+02 0.005 17.6 5.2 40 48-87 60-100 (145)
61 PF14778 ODR4-like: Olfactory 20.3 67 0.0014 24.0 1.5 30 37-66 41-70 (362)
No 1
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=99.75 E-value=8.9e-18 Score=120.62 Aligned_cols=105 Identities=33% Similarity=0.524 Sum_probs=90.7
Q ss_pred HhHHHHHHHhhcCCCCCCcCcHHHHHHHhc-CCchhHHHHHHHHHHhHHHHHHhhCCCccchhhhHHHhhccCCCHHHHH
Q psy5127 2 RAMDGLLAKSTLDRDVIKPQDVKDVLSVVA-SNPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTSHFSAPYDLH 80 (128)
Q Consensus 2 ~~ll~~~L~~~l~~~~v~~qd~~~~~~~v~-~~~~g~~~~~~fl~~n~~~i~~~~~~~~~~~~~~l~~~~~~~~t~~~~~ 80 (128)
+++++++|+++++++.|+.||+..++.+++ .+|.|++.+|+|+.+||+.|.++++.++..+..++..+++.+||+++++
T Consensus 217 ~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~~t~~~~~ 296 (324)
T PF11838_consen 217 PELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNFSTEEQLD 296 (324)
T ss_dssp HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT--SHHHHH
T ss_pred HHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccCCCHHHHH
Confidence 478999999999976699999999999998 9999999999999999999999998755578899998999999999999
Q ss_pred HHHHHHhcCC--CChhHhHHHHHHHHHH
Q psy5127 81 EVKAFFKDMD--VGSGARSLEQSLETIE 106 (128)
Q Consensus 81 ~~~~f~~~~~--~~~~~~~~~~~~e~i~ 106 (128)
++++||++++ .++..+++.|++|.||
T Consensus 297 ~~~~f~~~~~~~~~~~~r~l~q~~e~Ir 324 (324)
T PF11838_consen 297 ELEEFFEDKPKPPPGLRRALAQSLETIR 324 (324)
T ss_dssp HHHHHHHHHCTCCCTTTHHCHHHHHHHH
T ss_pred HHHHHHhhCcCCChHHHHHHHHHHHhcC
Confidence 9999996544 4577899999999986
No 2
>KOG1046|consensus
Probab=99.73 E-value=8.9e-17 Score=128.29 Aligned_cols=125 Identities=38% Similarity=0.653 Sum_probs=116.7
Q ss_pred HhHHHHHHHhhcCCCCCCcCcHHHHHHHhcCCchhHHHHHHHHHHhHHHHHHhhCCCccchhhhHHHhhccCCCHHHHHH
Q psy5127 2 RAMDGLLAKSTLDRDVIKPQDVKDVLSVVASNPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTSHFSAPYDLHE 81 (128)
Q Consensus 2 ~~ll~~~L~~~l~~~~v~~qd~~~~~~~v~~~~~g~~~~~~fl~~n~~~i~~~~~~~~~~~~~~l~~~~~~~~t~~~~~~ 81 (128)
...++++|+++++.+.++.||...++.+++.+|.|..++|+|+.+||+.+.++++ +...+..++..+...+.++.++++
T Consensus 757 ~~~l~~~l~~~~~~~~v~~qd~~~~~~~~~~~~~g~~~a~~~~~~n~~~l~~~~~-~~~~~~~li~~~~~~~~~~~~~~~ 835 (882)
T KOG1046|consen 757 PWLLQRLLDLAFDAENVRDQDVLTLLQGISGNPRGVELAWKFLQDNWKELLNRYG-NNFELSRLISFITEPFATEEKLDE 835 (882)
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHhccCCHHHHHH
Confidence 3578899999998555999999999999999999999999999999999999999 778999999999999999999999
Q ss_pred HHHHHhcCCCChhHhHHHHHHHHHHHhHHHHhhCHHHHHHHHhhhc
Q psy5127 82 VKAFFKDMDVGSGARSLEQSLETIELNIHWVRRNEELIFQWLSSYL 127 (128)
Q Consensus 82 ~~~f~~~~~~~~~~~~~~~~~e~i~~n~~w~~~~~~~i~~wl~~~~ 127 (128)
+++|+...+..+..+.+++++|.++.|+.|.+++...+.+|+.+.+
T Consensus 836 ~~~f~~~~~~~~~~~~~~~~le~~~~ni~W~~~~~~~l~~~l~~~~ 881 (882)
T KOG1046|consen 836 VEKFFADIPKTGAERALQQALETVKANIQWVERNEENLTQWLLEAL 881 (882)
T ss_pred HHHHHhcCCcchhhHHHHHHHHHHHhhhhHHHhhHHHHHHHHHHhc
Confidence 9999999887767899999999999999999999999999998765
No 3
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=99.17 E-value=3.6e-10 Score=90.58 Aligned_cols=110 Identities=10% Similarity=0.057 Sum_probs=87.3
Q ss_pred hHHHHHHHhhcCCCCCCcCcHHHHHHHhcCCchhHHHHHHHHHHhHHHHHHhhCCCccchhhhHHHhhc--cCCCHHHHH
Q psy5127 3 AMDGLLAKSTLDRDVIKPQDVKDVLSVVASNPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTS--HFSAPYDLH 80 (128)
Q Consensus 3 ~ll~~~L~~~l~~~~v~~qd~~~~~~~v~~~~~g~~~~~~fl~~n~~~i~~~~~~~~~~~~~~l~~~~~--~~~t~~~~~ 80 (128)
+++++.+..++.++.++.||...++.+++ ++.|++++|+|+.+||+.|.++++..+..+...+...+. .+|+.+.++
T Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 795 (831)
T TIGR02412 717 AAKREAWQKLVTTDALPNSKQRAIIEGFW-QPEQALLLAAYAERYFANLADIWKRRGPAIAQAISRGLFPATAVNYDTLA 795 (831)
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHhhcC-CCCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccCCHHHHH
Confidence 56665566555554489999999999988 569999999999999999999987422455555544343 799999999
Q ss_pred HHHHHHhcC--CCChhHhHHHHHHHHHHHhHHHHh
Q psy5127 81 EVKAFFKDM--DVGSGARSLEQSLETIELNIHWVR 113 (128)
Q Consensus 81 ~~~~f~~~~--~~~~~~~~~~~~~e~i~~n~~w~~ 113 (128)
++++||+.+ ..++..|.+.++.+.++.|+++++
T Consensus 796 ~~~~~~~~~~~~~~~~~r~l~~~~d~~~r~~~~~~ 830 (831)
T TIGR02412 796 TADKWLRSQADASPGLRRTLLERRDAAERALRARE 830 (831)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhHHHHHHHhhc
Confidence 999999743 344779999999999999999875
No 4
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=96.94 E-value=0.0041 Score=50.84 Aligned_cols=111 Identities=17% Similarity=0.202 Sum_probs=85.5
Q ss_pred HHHHHHHhhcCCCCCCcCcHHHHHHHhcCCchhHHHHHHHHHHhHH---HHHHhhCCCccchhhhHHHhhccCCCHHHHH
Q psy5127 4 MDGLLAKSTLDRDVIKPQDVKDVLSVVASNPEGNFLAWRHLKAHWK---GLQNLFGNGTFSMGALIGVVTSHFSAPYDLH 80 (128)
Q Consensus 4 ll~~~L~~~l~~~~v~~qd~~~~~~~v~~~~~g~~~~~~fl~~n~~---~i~~~~~~~~~~~~~~l~~~~~~~~t~~~~~ 80 (128)
.+.+.|..+..+..+.+|++.........++.+.+.+|.|...||. .+....+.+......++.. ...++....++
T Consensus 743 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~ 821 (859)
T COG0308 743 DKWFALQAISPGDTVLEQDIGLMIHAAFEAPNPNEARWLYGTFAFENPALLHALDGSGYRFLGVIVLE-LNIFNPQLALR 821 (859)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHhhhhhhCCcchhhHHHHHHHhhhchhhhhhhccccccccceEEEE-eeccchhhHHH
Confidence 3445666666554478899988888888899999999999999998 5555655554444444433 46688899999
Q ss_pred HHHHHHhcCCCChhHhHHHHHHHHHHHhHHHHhhC
Q psy5127 81 EVKAFFKDMDVGSGARSLEQSLETIELNIHWVRRN 115 (128)
Q Consensus 81 ~~~~f~~~~~~~~~~~~~~~~~e~i~~n~~w~~~~ 115 (128)
+++.|++....++..+.+.++++.|....++.+.-
T Consensus 822 ~i~~~~~~~~~~~~~~~~~~~l~~i~~~~~l~~~~ 856 (859)
T COG0308 822 KIEEFLELKKLKALERLIREALETIAARERLSKDL 856 (859)
T ss_pred HHHHHhhhhcchhHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999998776677899999999999998887653
No 5
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=93.46 E-value=0.7 Score=28.22 Aligned_cols=76 Identities=12% Similarity=0.264 Sum_probs=42.6
Q ss_pred HHHHHHHhHHHHHHhhCCCccchhhhHHHhhccCCCHHHHHHHHHHH--------------hcCCCChhHhHHHHHHHHH
Q psy5127 40 AWRHLKAHWKGLQNLFGNGTFSMGALIGVVTSHFSAPYDLHEVKAFF--------------KDMDVGSGARSLEQSLETI 105 (128)
Q Consensus 40 ~~~fl~~n~~~i~~~~~~~~~~~~~~l~~~~~~~~t~~~~~~~~~f~--------------~~~~~~~~~~~~~~~~e~i 105 (128)
+|+|+++||..|.+-++. ....+..-+.+.+++.++++++.+=+ +..|+..--+.++-.++.+
T Consensus 1 ~~~~~~~~w~ii~a~~~~---~~~~~~~~l~~~~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el 77 (106)
T PF10805_consen 1 MWEFIKKNWGIIWAVFGI---AGGIFWLWLRRTYAKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAEL 77 (106)
T ss_pred ChHHHHhCcHHHHHHHHH---HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 489999999998876642 22222233566688877777773333 2232222234455555555
Q ss_pred HHhHHHHhhCHHH
Q psy5127 106 ELNIHWVRRNEEL 118 (128)
Q Consensus 106 ~~n~~w~~~~~~~ 118 (128)
+-.++=.+.....
T Consensus 78 ~G~~~~l~~~l~~ 90 (106)
T PF10805_consen 78 RGELKELSARLQG 90 (106)
T ss_pred HhHHHHHHHHHHH
Confidence 5555555444443
No 6
>PF03715 Noc2: Noc2p family; InterPro: IPR005343 This is a small family of mainly hypothetical proteins of unknown function.
Probab=84.86 E-value=2.6 Score=30.60 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=36.8
Q ss_pred HHHHHHHhcCCCChhHhHHHHHHHHHHHhHHHHhhCH----------HHHHHHHh
Q psy5127 80 HEVKAFFKDMDVGSGARSLEQSLETIELNIHWVRRNE----------ELIFQWLS 124 (128)
Q Consensus 80 ~~~~~f~~~~~~~~~~~~~~~~~e~i~~n~~w~~~~~----------~~i~~wl~ 124 (128)
-.++.|.+..+.....+.+++.++.++.|.+|+++.+ +.+.+|.+
T Consensus 228 ~~LKr~~K~~k~~~~~~~ik~Li~kiee~~~~I~~kR~~v~f~p~d~~~V~~fe~ 282 (299)
T PF03715_consen 228 VQLKRFLKSCKNAKFKRQIKQLIDKIEENSKFIESKRSKVDFSPKDQAQVEAFES 282 (299)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHHH
Confidence 4689999887666788999999999999999998654 44677765
No 7
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=76.34 E-value=3.5 Score=19.93 Aligned_cols=19 Identities=16% Similarity=0.454 Sum_probs=15.6
Q ss_pred HhHHHHhhCHHHHHHHHhh
Q psy5127 107 LNIHWVRRNEELIFQWLSS 125 (128)
Q Consensus 107 ~n~~w~~~~~~~i~~wl~~ 125 (128)
.|....+++.++|.+|+++
T Consensus 4 i~~~fieryfddiqkwirn 22 (40)
T PF13124_consen 4 IYTAFIERYFDDIQKWIRN 22 (40)
T ss_pred ehHHHHHHHHHHHHHHHHH
Confidence 3667889999999999875
No 8
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=74.20 E-value=22 Score=25.18 Aligned_cols=71 Identities=14% Similarity=0.147 Sum_probs=46.8
Q ss_pred CCcCcHHHHHHHhcCCchhHHHHHHHHHHhHHHHHHhhCCCccchhhhHHHhhccCCCHHHHHHHHHHHhcCCC
Q psy5127 18 IKPQDVKDVLSVVASNPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTSHFSAPYDLHEVKAFFKDMDV 91 (128)
Q Consensus 18 v~~qd~~~~~~~v~~~~~g~~~~~~fl~~n~~~i~~~~~~~~~~~~~~l~~~~~~~~t~~~~~~~~~f~~~~~~ 91 (128)
+|..-...+..-+..+|..|+.+.+|+.+=+..-.++-+ +...+.++..++. ++=.+-+.+++.-|+....
T Consensus 129 vR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~--~~~~~~Lv~~~~d-L~~~EL~~~I~~~f~~~lV 199 (249)
T PF06685_consen 129 VRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNP--SFLWGSLVADICD-LYPEELLPEIRKAFEDGLV 199 (249)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCc--hHHHHHHHHHHHh-cCHHHhHHHHHHHHHcCCC
Confidence 443333333334457889999999999877766333322 2456777766654 7778888999999887654
No 9
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=71.02 E-value=18 Score=20.90 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=26.8
Q ss_pred HHHHhHHHHHHhhCCCccchhhhHHHhhc-cCCCHHHHHHHHH
Q psy5127 43 HLKAHWKGLQNLFGNGTFSMGALIGVVTS-HFSAPYDLHEVKA 84 (128)
Q Consensus 43 fl~~n~~~i~~~~~~~~~~~~~~l~~~~~-~~~t~~~~~~~~~ 84 (128)
|+..||..+..+... ...++..+-+ .+-|+++++.+++
T Consensus 2 fv~~~r~~Li~~v~~----v~~ilD~L~~~~Vit~e~~~~I~a 40 (82)
T cd08330 2 FVDQHREALIARVTN----VDPILDKLHGKKVITQEQYSEVRA 40 (82)
T ss_pred hHHHHHHHHHHHHhh----HHHHHHHHHHCCCCCHHHHHHHHc
Confidence 789999999888854 3444444333 4668888888876
No 10
>PF14165 YtzH: YtzH-like protein
Probab=70.90 E-value=19 Score=21.20 Aligned_cols=55 Identities=13% Similarity=0.212 Sum_probs=36.1
Q ss_pred ccCCCHHHHHHHHHHHhcCCCC-hhHhHHHHHHHHHHHhHHH----------HhhCHHHHHHHHhh
Q psy5127 71 SHFSAPYDLHEVKAFFKDMDVG-SGARSLEQSLETIELNIHW----------VRRNEELIFQWLSS 125 (128)
Q Consensus 71 ~~~~t~~~~~~~~~f~~~~~~~-~~~~~~~~~~e~i~~n~~w----------~~~~~~~i~~wl~~ 125 (128)
..+-|..+.++++.+++..... .....++++++.|-.--.= ...+...+..|+..
T Consensus 20 DccgTvsEcEQieRLvksLm~n~~i~~~ik~~L~~Iy~ysq~G~~~~~l~~Hi~~~q~~l~qWv~~ 85 (87)
T PF14165_consen 20 DCCGTVSECEQIERLVKSLMANPNIDADIKQTLEEIYSYSQNGKYAQSLDNHIEFHQSNLSQWVND 85 (87)
T ss_pred hccCcHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHccCccccchhhhhHhhHHHHHHHHHh
Confidence 3455778888888887765432 4467777777776443332 45677888888753
No 11
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=64.78 E-value=21 Score=21.40 Aligned_cols=80 Identities=11% Similarity=0.168 Sum_probs=41.9
Q ss_pred HhHHHHHHhhCCCccchhhhHHHhhccCCCHHHHHHHHHHHhcCC---C-ChhHhHHH----HHHHHHHHhHHHHhhCHH
Q psy5127 46 AHWKGLQNLFGNGTFSMGALIGVVTSHFSAPYDLHEVKAFFKDMD---V-GSGARSLE----QSLETIELNIHWVRRNEE 117 (128)
Q Consensus 46 ~n~~~i~~~~~~~~~~~~~~l~~~~~~~~t~~~~~~~~~f~~~~~---~-~~~~~~~~----~~~e~i~~n~~w~~~~~~ 117 (128)
++|+.+...+... ..-..+ ..+...++|+++.+.+..=+.=.. . +-..+.++ -+...|---.+-.+...+
T Consensus 7 ~~w~~~~~ll~~~-~~~~~l-~~~l~~lLTp~E~~~l~~R~~i~~~Ll~~~~tQrEIa~~lGiS~atIsR~sn~lk~~~~ 84 (94)
T TIGR01321 7 QAWEAFLKLLKKA-DSEDDM-QLLLELILTRSEREDLGDRIRIVNELLNGNMSQREIASKLGVSIATITRGSNNLKTMDP 84 (94)
T ss_pred HHHHHHHHHHHHc-CCHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhCCChhhhhHHHhhcccCCH
Confidence 6677766655431 222222 233455778888887774432110 1 11123333 233444444455566678
Q ss_pred HHHHHHhhhc
Q psy5127 118 LIFQWLSSYL 127 (128)
Q Consensus 118 ~i~~wl~~~~ 127 (128)
.+.+||++.+
T Consensus 85 ~~~~~l~~~l 94 (94)
T TIGR01321 85 NFKQFLRKKI 94 (94)
T ss_pred HHHHHHHhhC
Confidence 8999998653
No 12
>PF05596 Taeniidae_ag: Taeniidae antigen; InterPro: IPR008860 This family consists of several antigen proteins from Taenia and Echinococcus (tapeworm) species.
Probab=60.90 E-value=27 Score=19.33 Aligned_cols=48 Identities=13% Similarity=0.173 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcCCCChhHhHHHHHHHHHHHhHHHHhhCHHHHHHHHhh
Q psy5127 76 PYDLHEVKAFFKDMDVGSGARSLEQSLETIELNIHWVRRNEELIFQWLSS 125 (128)
Q Consensus 76 ~~~~~~~~~f~~~~~~~~~~~~~~~~~e~i~~n~~w~~~~~~~i~~wl~~ 125 (128)
-..++++..||...|. .....+-+-+-...+..++.+-+..+.+|++.
T Consensus 13 kK~i~~v~~FF~~DPl--GqkIa~l~kdw~~~~~~~r~KiR~~L~ey~k~ 60 (64)
T PF05596_consen 13 KKWIEEVRNFFYEDPL--GQKIAQLAKDWNEICQEVRKKIRAALAEYCKG 60 (64)
T ss_pred HHHHHHHHHHhccCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667889999987653 34445555677777777888888888777653
No 13
>cd05133 RasGAP_IQGAP1 IQGAP1 is a homodimeric protein that is widely expressed among vertebrate cell types from early embryogenesis. Mammalian IQGAP1 protein is the best characterized member of the IQGAP family, and contains several protein-interacting domains. Human IQGAP1 is most similar to mouse Iqgap1 (94% identity) and has 62% identity to human IQGAP2. IQGAP1 binds and cross-links actin filaments in vitro and has been implicated in Ca2+/calmodulin signaling, E-cadherin-dependent cell adhesion, cell motility, and invasion. Yeast IQGAP homologues have a role in the recruitment of actin filaments, are components of the spindle pole body, and are required for actomyosin ring assembly and cytokinesis. Furthermore, IQGAP1 over-expression has also been detected in gastric and colorectal carcinomas and gastric cancer cell lines.
Probab=49.84 E-value=54 Score=24.62 Aligned_cols=100 Identities=17% Similarity=0.177 Sum_probs=56.1
Q ss_pred HHHHHhcCCchhHHHHHHHHHHhHHHHHHhhCCCc-----cchhh--hHHHhhccCCCHHHHHHHHHHHhcCCCCh---h
Q psy5127 25 DVLSVVASNPEGNFLAWRHLKAHWKGLQNLFGNGT-----FSMGA--LIGVVTSHFSAPYDLHEVKAFFKDMDVGS---G 94 (128)
Q Consensus 25 ~~~~~v~~~~~g~~~~~~fl~~n~~~i~~~~~~~~-----~~~~~--~l~~~~~~~~t~~~~~~~~~f~~~~~~~~---~ 94 (128)
.+..++..=|.|...+...+. +.+..+|+... ...+. ++..++..+.+++.+.-+..-......+. .
T Consensus 136 ~I~~S~~~~P~~iR~ick~i~---~~~~~kFP~~~~~~i~~~vG~fiflRfi~PAIvsPe~~~ii~~~~~~~~~~~~rrn 212 (360)
T cd05133 136 AIVSSVDKIPYGMRFIAKVLK---DSLHEKFPDAGEDELLKIVGNLLYYRYMNPAIVAPDAFDIIDLSAGGQLTTDQRRN 212 (360)
T ss_pred HHHHhHHhCCHHHHHHHHHHH---HHHHHHCCCCchhhHHHHHHHHHHHHhccccccCchhcCccccccCCCCCHHHHhh
Confidence 445566677888887777764 45567777532 12222 22345666777777654432111111111 2
Q ss_pred HhHHHHHHHHHHHhHHHH--hhCHHHHHHHHhhhc
Q psy5127 95 ARSLEQSLETIELNIHWV--RRNEELIFQWLSSYL 127 (128)
Q Consensus 95 ~~~~~~~~e~i~~n~~w~--~~~~~~i~~wl~~~~ 127 (128)
-..+.+.+..+.++.-|- +.+...+..|+.+++
T Consensus 213 L~~iaKvLQ~lan~~~f~~~e~~m~pLN~fI~~~~ 247 (360)
T cd05133 213 LGSIAKMLQHAASNKMFLGDNAHLSIINEYLSQSY 247 (360)
T ss_pred HHHHHHHHHHHHcCCCCCCCccHHHHHHHHHHHHH
Confidence 345667777777777664 246667788877654
No 14
>COG3251 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.02 E-value=12 Score=21.01 Aligned_cols=22 Identities=14% Similarity=0.430 Sum_probs=18.6
Q ss_pred cCCchhHHHHHHHHHHhHHHHH
Q psy5127 31 ASNPEGNFLAWRHLKAHWKGLQ 52 (128)
Q Consensus 31 ~~~~~g~~~~~~fl~~n~~~i~ 52 (128)
...+.+++.-.+|+..||..+.
T Consensus 39 v~~~~sr~aCldyve~~Wtdmr 60 (71)
T COG3251 39 VHEPGSREACLDYVEVHWTDMR 60 (71)
T ss_pred ecccccHHHHHHHHHHHhccCC
Confidence 3567889999999999999864
No 15
>PHA00440 host protein H-NS-interacting protein
Probab=49.00 E-value=48 Score=19.91 Aligned_cols=36 Identities=14% Similarity=0.316 Sum_probs=27.6
Q ss_pred hHHHHHHHhhcC---CCCCCcCcHHHHHHHhcCCchhHH
Q psy5127 3 AMDGLLAKSTLD---RDVIKPQDVKDVLSVVASNPEGNF 38 (128)
Q Consensus 3 ~ll~~~L~~~l~---~~~v~~qd~~~~~~~v~~~~~g~~ 38 (128)
.+.+.+++++-. ++.+.+.|...+..++..+|.|.-
T Consensus 24 ~~~e~l~~Lak~v~~GE~~~~~~re~lvqaLT~G~egai 62 (98)
T PHA00440 24 ILEEDILDLAKQAGAGEEVNPKDKELLVQALTHGPEGAA 62 (98)
T ss_pred HHHHHHHHHHhhcCCcccCChHHHHHHHHHHhhChHHHH
Confidence 356677777753 455899999999999998887764
No 16
>PF15467 SGIII: Secretogranin-3
Probab=48.94 E-value=13 Score=27.70 Aligned_cols=18 Identities=39% Similarity=0.754 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhHHHHhhC
Q psy5127 98 LEQSLETIELNIHWVRRN 115 (128)
Q Consensus 98 ~~~~~e~i~~n~~w~~~~ 115 (128)
-..-+|.||-||.|+++|
T Consensus 390 sEaYLEAIRKNIEWLKkH 407 (453)
T PF15467_consen 390 SEAYLEAIRKNIEWLKKH 407 (453)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 455689999999999887
No 17
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=48.55 E-value=38 Score=17.42 Aligned_cols=20 Identities=10% Similarity=0.145 Sum_probs=16.1
Q ss_pred CCCHHHHHHHHHHHhcCCCC
Q psy5127 73 FSAPYDLHEVKAFFKDMDVG 92 (128)
Q Consensus 73 ~~t~~~~~~~~~f~~~~~~~ 92 (128)
.-|.++...|+++|..++-+
T Consensus 6 ~~t~~q~~~L~~~f~~~~~p 25 (57)
T PF00046_consen 6 RFTKEQLKVLEEYFQENPYP 25 (57)
T ss_dssp SSSHHHHHHHHHHHHHSSSC
T ss_pred CCCHHHHHHHHHHHHHhccc
Confidence 34789999999999987655
No 18
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=46.13 E-value=65 Score=19.36 Aligned_cols=85 Identities=15% Similarity=0.166 Sum_probs=52.1
Q ss_pred CHhHHHHHHHhhcC--CCCCCcCcHHHHHHHhcCCchhHHHHHHHHHHhHHHHHHhhCC--CccchhhhHHHhhccCCCH
Q psy5127 1 MRAMDGLLAKSTLD--RDVIKPQDVKDVLSVVASNPEGNFLAWRHLKAHWKGLQNLFGN--GTFSMGALIGVVTSHFSAP 76 (128)
Q Consensus 1 ~~~ll~~~L~~~l~--~~~v~~qd~~~~~~~v~~~~~g~~~~~~fl~~n~~~i~~~~~~--~~~~~~~~l~~~~~~~~t~ 76 (128)
|+..+.++++++-. ++.|+.+|+..++.-+.+.-...+ +.+=-..+...-.. +.-.++..|+.++...-++
T Consensus 1 ~~~~l~~iv~WLRaGYP~GvP~~Dy~PLlALL~r~Ltd~e-----v~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P~~ 75 (96)
T PF11829_consen 1 MPSFLASIVDWLRAGYPEGVPPTDYVPLLALLRRRLTDDE-----VAEVAAELAARGDPPVDRIDIGVAITRVTDELPTP 75 (96)
T ss_dssp HHHHHHHHHHHHHHH-TT-B-HHHHHHHHHHHTTTS-HHH-----HHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S-H
T ss_pred CChHHHHHHHHHHccCCCCCCCCccHHHHHHhcccCCHHH-----HHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCcCH
Confidence 67888999998753 455999999888887754322211 11111222222111 2345778888888999999
Q ss_pred HHHHHHHHHHhcCC
Q psy5127 77 YDLHEVKAFFKDMD 90 (128)
Q Consensus 77 ~~~~~~~~f~~~~~ 90 (128)
++++++.+-+..+.
T Consensus 76 ~di~RV~~~Laa~G 89 (96)
T PF11829_consen 76 EDIERVRARLAAAG 89 (96)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCC
Confidence 99999998887654
No 19
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=45.84 E-value=32 Score=16.55 Aligned_cols=29 Identities=14% Similarity=0.312 Sum_probs=19.5
Q ss_pred HHHHHHHhcCCCChh-H-hHHHHHHHHHHHh
Q psy5127 80 HEVKAFFKDMDVGSG-A-RSLEQSLETIELN 108 (128)
Q Consensus 80 ~~~~~f~~~~~~~~~-~-~~~~~~~e~i~~n 108 (128)
++++++++.+..+.. . .+-.+.++.++.|
T Consensus 7 ~~L~~wL~~~gi~~~~~~~~rd~Ll~~~k~~ 37 (38)
T PF10281_consen 7 SDLKSWLKSHGIPVPKSAKTRDELLKLAKKN 37 (38)
T ss_pred HHHHHHHHHcCCCCCCCCCCHHHHHHHHHHh
Confidence 678899988875422 2 2566777777765
No 20
>PF09554 RE_HaeII: HaeII restriction endonuclease; InterPro: IPR019058 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This family includes Type-2 restriction enzyme NgoBI, and HaeII. They recognise the double-stranded sequence RGCGCY and cleaves after C-5.
Probab=43.10 E-value=1.3e+02 Score=21.93 Aligned_cols=87 Identities=14% Similarity=0.133 Sum_probs=47.8
Q ss_pred HHHhhcCCCCCCcCcHHHHHHHhc-CCchhHHHHHHHHHHhHHHHHHhhCCCccchhhhHHHhhccCCCHHHHHHHHHHH
Q psy5127 8 LAKSTLDRDVIKPQDVKDVLSVVA-SNPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTSHFSAPYDLHEVKAFF 86 (128)
Q Consensus 8 ~L~~~l~~~~v~~qd~~~~~~~v~-~~~~g~~~~~~fl~~n~~~i~~~~~~~~~~~~~~l~~~~~~~~t~~~~~~~~~f~ 86 (128)
|-+-+++++ --|-++..++.-.- .+..+. =.|+...|.. +++ .+...+..+......--++.+|-..|
T Consensus 69 fQD~lf~~N-AmPPe~L~VLg~~Nrk~~GiV---E~YIY~kF~e---k~~----qmssal~y~~~s~~~nF~L~efl~~F 137 (338)
T PF09554_consen 69 FQDDLFNDN-AMPPEVLKVLGDENRKNNGIV---EAYIYDKFFE---KHS----QMSSALQYCLNSDPENFQLSEFLNLF 137 (338)
T ss_pred hhhhhhhcC-CCCHHHHHHhhhhhccccccH---HHHHHHHHHH---HHH----HHHHHHHHHHhCCcccccHHHHHHHH
Confidence 344444444 23445555555443 232333 3566555443 443 35555666555444556777777777
Q ss_pred hcCCCChhHhHHHHHHHHHHH
Q psy5127 87 KDMDVGSGARSLEQSLETIEL 107 (128)
Q Consensus 87 ~~~~~~~~~~~~~~~~e~i~~ 107 (128)
-.. +|.+|++...-|.|-.
T Consensus 138 w~E--pGlKRSiDKiYEIvvY 156 (338)
T PF09554_consen 138 WNE--PGLKRSIDKIYEIVVY 156 (338)
T ss_pred hhC--cchhhhHHHHHHHHHH
Confidence 653 5778888887777644
No 21
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=42.98 E-value=16 Score=20.71 Aligned_cols=11 Identities=18% Similarity=0.510 Sum_probs=6.1
Q ss_pred HHhhCHHHHHH
Q psy5127 111 WVRRNEELIFQ 121 (128)
Q Consensus 111 w~~~~~~~i~~ 121 (128)
|.+.|.+.+.+
T Consensus 50 WLD~nLP~lVE 60 (73)
T PF10691_consen 50 WLDENLPGLVE 60 (73)
T ss_pred HHHhccHHHHH
Confidence 66666555543
No 22
>PF11247 DUF2675: Protein of unknown function (DUF2675) ; InterPro: IPR022611 Members in this family of proteins include Bacteriophage T7 gene 5.5; they have no known function.
Probab=42.14 E-value=66 Score=19.41 Aligned_cols=36 Identities=11% Similarity=0.185 Sum_probs=27.0
Q ss_pred hHHHHHHHhhc---CCCCCCcCcHHHHHHHhcCCchhHH
Q psy5127 3 AMDGLLAKSTL---DRDVIKPQDVKDVLSVVASNPEGNF 38 (128)
Q Consensus 3 ~ll~~~L~~~l---~~~~v~~qd~~~~~~~v~~~~~g~~ 38 (128)
++.+.+|+++- +++.+.+.|...+..++..+|.|.-
T Consensus 24 ~~~e~ll~Lak~v~~GE~~~~~~re~l~qaLT~G~egav 62 (98)
T PF11247_consen 24 EFEEDLLELAKKVGAGEKVSGFQREMLVQALTHGPEGAV 62 (98)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHHHHhcChHHHH
Confidence 45667777764 3455899999999999988777653
No 23
>PRK01381 Trp operon repressor; Provisional
Probab=41.92 E-value=44 Score=20.22 Aligned_cols=80 Identities=13% Similarity=0.212 Sum_probs=42.8
Q ss_pred HhHHHHHHhhCCCccchhhhHHHhhccCCCHHHHHHHHHHHh------c--CCCChhHhHHHHHHHHHHHhHHHHhhCHH
Q psy5127 46 AHWKGLQNLFGNGTFSMGALIGVVTSHFSAPYDLHEVKAFFK------D--MDVGSGARSLEQSLETIELNIHWVRRNEE 117 (128)
Q Consensus 46 ~n~~~i~~~~~~~~~~~~~~l~~~~~~~~t~~~~~~~~~f~~------~--~~~~~~~~~~~~~~e~i~~n~~w~~~~~~ 117 (128)
++|..+...+... ..-..+ ..+..-++|+.+.+.+..=+. . .+.......+.-++.+|--..+-.+...+
T Consensus 7 ~~W~~~v~ll~~a-~~~~~~-~~~l~~llTp~Er~al~~R~~I~~~L~~g~~sQREIa~~lGvSiaTITRgsn~Lk~~~~ 84 (99)
T PRK01381 7 QEWQRFVDLLKQA-FEEDLH-LPLLTLLLTPDEREALGTRVRIVEELLRGELSQREIKQELGVGIATITRGSNSLKTAPP 84 (99)
T ss_pred hhHHHHHHHHHHh-ccHHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHhCCceeeehhhHHHhccCCH
Confidence 5666665555431 122222 223355778888877764432 1 11112223333344555556666677778
Q ss_pred HHHHHHhhhc
Q psy5127 118 LIFQWLSSYL 127 (128)
Q Consensus 118 ~i~~wl~~~~ 127 (128)
.+.+||++.+
T Consensus 85 ~~k~~l~~~l 94 (99)
T PRK01381 85 EFKEWLEQQL 94 (99)
T ss_pred HHHHHHHHHh
Confidence 8999998764
No 24
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=40.39 E-value=81 Score=18.81 Aligned_cols=12 Identities=17% Similarity=0.493 Sum_probs=5.6
Q ss_pred HHHHHHHHhcCC
Q psy5127 79 LHEVKAFFKDMD 90 (128)
Q Consensus 79 ~~~~~~f~~~~~ 90 (128)
++++++|....+
T Consensus 18 IEqiE~~i~P~~ 29 (100)
T PF06363_consen 18 IEQIEAFIEPRP 29 (100)
T ss_pred HHHHHHHHCCCC
Confidence 344555554443
No 25
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=39.38 E-value=73 Score=19.14 Aligned_cols=40 Identities=13% Similarity=-0.047 Sum_probs=27.4
Q ss_pred hHHHHHHHhhcCCCCCCcCcHHHHHHHhcCCchhHHHHHH
Q psy5127 3 AMDGLLAKSTLDRDVIKPQDVKDVLSVVASNPEGNFLAWR 42 (128)
Q Consensus 3 ~ll~~~L~~~l~~~~v~~qd~~~~~~~v~~~~~g~~~~~~ 42 (128)
.+++++|.+.-.+....+..+..++..+..+|.|...+-+
T Consensus 30 ~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~ 69 (98)
T PF14726_consen 30 LLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRD 69 (98)
T ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHH
Confidence 4677788876555445667777777778888887765444
No 26
>KOG2256|consensus
Probab=38.18 E-value=55 Score=26.57 Aligned_cols=38 Identities=26% Similarity=0.417 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCCChhHhHHHHHHHHHHHhHHHHhhCHH
Q psy5127 80 HEVKAFFKDMDVGSGARSLEQSLETIELNIHWVRRNEE 117 (128)
Q Consensus 80 ~~~~~f~~~~~~~~~~~~~~~~~e~i~~n~~w~~~~~~ 117 (128)
-+++.|.++.....+.+.+.+.++++++|.+.+.+.+.
T Consensus 542 ~rLk~f~k~skn~~~~r~v~~li~kle~ns~FV~~kR~ 579 (661)
T KOG2256|consen 542 MRLKSFLKESKNGNYKRVVKQLIEKLEENSKFVLEKRN 579 (661)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46899998877667889999999999999999976644
No 27
>cd08306 Death_FADD Fas-associated Death Domain protein-protein interaction domain. Death domain (DD) found in FAS-associated via death domain (FADD). FADD is a component of the death-inducing signaling complex (DISC) and serves as an adaptor in the signaling pathway of death receptor proteins. It modulates apoptosis as well as non-apoptotic processes such as cell cycle progression, survival, innate immune signaling, and hematopoiesis. FADD contains an N-terminal DED and a C-terminal DD. Its DD interacts with the DD of the activated death receptor, FAS, and its DED recruits the initiator caspases, caspase-8 and -10, to the DISC complex via a homotypic interaction with the N-terminal DED of the caspase. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain),
Probab=37.13 E-value=85 Score=18.14 Aligned_cols=63 Identities=10% Similarity=0.109 Sum_probs=32.7
Q ss_pred HHHHHhHHHHHHhhCCCccchhhhHHHhhccCCCHHHHHHHHHHHhcCCCChhHhHHHHHHHHH
Q psy5127 42 RHLKAHWKGLQNLFGNGTFSMGALIGVVTSHFSAPYDLHEVKAFFKDMDVGSGARSLEQSLETI 105 (128)
Q Consensus 42 ~fl~~n~~~i~~~~~~~~~~~~~~l~~~~~~~~t~~~~~~~~~f~~~~~~~~~~~~~~~~~e~i 105 (128)
+-+-..|..+..++|-....+..+-..-.. -..+..++.+..+............+-+++..+
T Consensus 10 ~~lG~~Wk~laR~LGlse~~Id~i~~~~~~-~~~eq~~~mL~~W~~~~g~~At~~~L~~aL~~~ 72 (86)
T cd08306 10 ENVGRDWRKLARKLGLSETKIESIEEAHPR-NLREQVRQSLREWKKIKKKEAKVADLIKALRDC 72 (86)
T ss_pred HHHhhhHHHHHHHcCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHHhHCcchHHHHHHHHHHHc
Confidence 334445999988887544444444332211 112456666667766554333334444555443
No 28
>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins. Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.
Probab=36.09 E-value=41 Score=19.70 Aligned_cols=42 Identities=14% Similarity=0.036 Sum_probs=25.0
Q ss_pred HhHHHHHHHhhcCCCCCCcCcHHHHHHHhcCCchhHHHHHHHHHHhHH
Q psy5127 2 RAMDGLLAKSTLDRDVIKPQDVKDVLSVVASNPEGNFLAWRHLKAHWK 49 (128)
Q Consensus 2 ~~ll~~~L~~~l~~~~v~~qd~~~~~~~v~~~~~g~~~~~~fl~~n~~ 49 (128)
+++|.++|+- |+..++.-.+-+-..|-...+.+.+|+.+|..
T Consensus 3 k~lL~~ml~~------ip~~~~kvPilGty~nt~sG~~Iv~~L~~n~~ 44 (84)
T cd04436 3 KELLAAMLKE------IPLADYKVPILGTYQNTSSGSEIVSWLQENMP 44 (84)
T ss_pred HHHHHHHHHh------CCCccceecccccccCcccHHHHHHHHHHcCC
Confidence 4555555442 45555555555544455555667899999874
No 29
>COG3935 DnaD Putative primosome component and related proteins [DNA replication, recombination, and repair]
Probab=34.82 E-value=1.1e+02 Score=21.73 Aligned_cols=54 Identities=11% Similarity=0.400 Sum_probs=37.9
Q ss_pred ccCCCHHHHHHHHHHHhcCCCC--hhHhHHHHHHHHHHHhHHHHhhCHHHHHHHHhhhc
Q psy5127 71 SHFSAPYDLHEVKAFFKDMDVG--SGARSLEQSLETIELNIHWVRRNEELIFQWLSSYL 127 (128)
Q Consensus 71 ~~~~t~~~~~~~~~f~~~~~~~--~~~~~~~~~~e~i~~n~~w~~~~~~~i~~wl~~~~ 127 (128)
+.+-++-+++++..++++-..+ -...+++.|++..+.|-++++ ..+.+|.++++
T Consensus 139 Gr~lsP~e~E~L~~wld~d~~~~elI~~ALkeAv~~gK~n~~YI~---~IL~nW~k~gv 194 (246)
T COG3935 139 GRMLSPFEIEDLQKWLDEDSHDPELIKAALKEAVENGKLNFKYID---AILRNWKKNGV 194 (246)
T ss_pred CCcCCchhHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCccHHHHH---HHHHHHHHcCC
Confidence 4477899999999999875533 346677777777777766664 34567766654
No 30
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=34.08 E-value=66 Score=17.61 Aligned_cols=19 Identities=11% Similarity=0.417 Sum_probs=13.0
Q ss_pred ccCCCHHHHHHHHHHHhcC
Q psy5127 71 SHFSAPYDLHEVKAFFKDM 89 (128)
Q Consensus 71 ~~~~t~~~~~~~~~f~~~~ 89 (128)
++.-|+.+.+.+..+++..
T Consensus 10 ~~~~s~~e~~~l~~~~~~~ 28 (77)
T PF07261_consen 10 GRPPSPSEIEKLEKWIDDY 28 (77)
T ss_dssp TSS--HHHHHHHHHHHCCC
T ss_pred CCCCCHHHHHHHHHHHHHc
Confidence 4566788888999998854
No 31
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=32.72 E-value=1.7e+02 Score=20.24 Aligned_cols=56 Identities=13% Similarity=0.202 Sum_probs=27.4
Q ss_pred hccCCCHHHHHHHHHHHhcCCCChhHhHHHHHHHHH-HHhHHHHhhCHHHHHHHHhhhc
Q psy5127 70 TSHFSAPYDLHEVKAFFKDMDVGSGARSLEQSLETI-ELNIHWVRRNEELIFQWLSSYL 127 (128)
Q Consensus 70 ~~~~~t~~~~~~~~~f~~~~~~~~~~~~~~~~~e~i-~~n~~w~~~~~~~i~~wl~~~~ 127 (128)
++.+..+..-+.|+.++.+.. +...-+...-+-+ ..+.+-.+.....+..|++++|
T Consensus 38 ~~~~s~q~~ee~F~~l~~sV~--~m~~~i~~~n~fl~~~~~~~~~~~~~~~~~YyKkhI 94 (205)
T PF12238_consen 38 LSNLSGQSDEEKFKSLFDSVP--LMKHKISHMNAFLNDWPPHMLEEGREKMTKYYKKHI 94 (205)
T ss_pred HHhcccCCHHHHHHHHHHHHH--HHHHHHHHHHHHHccCchhhhhccHHHHHHHHHHhc
Confidence 344555555556777766532 2222222222222 2344444555666777777665
No 32
>cd08784 Death_DRs Death Domain of Death Receptors. Death domain (DD) found in death receptor proteins. Death receptors are members of the tumor necrosis factor (TNF) receptor superfamily, characterized by having a cytoplasmic DD. Known members of the family are Fas (CD95/APO-1), TNF-receptor 1 (TNFR1/TNFRSF1A/p55/CD120a), TNF-related apoptosis-inducing ligand receptor 1 (TRAIL-R1 /DR4), and receptor 2 (TRAIL-R2/DR5/APO-2/KILLER), as well as Death Receptor 3 (DR3/APO-3/TRAMP/WSL-1/LARD). They are involved in apoptosis signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=31.58 E-value=1e+02 Score=17.44 Aligned_cols=59 Identities=7% Similarity=0.016 Sum_probs=35.9
Q ss_pred HhHHHHHHhhCCCccchhhhHHHhhccCCCHHHHHHHHHHHhcCCCChhHhHHHHHHHHHH
Q psy5127 46 AHWKGLQNLFGNGTFSMGALIGVVTSHFSAPYDLHEVKAFFKDMDVGSGARSLEQSLETIE 106 (128)
Q Consensus 46 ~n~~~i~~~~~~~~~~~~~~l~~~~~~~~t~~~~~~~~~f~~~~~~~~~~~~~~~~~e~i~ 106 (128)
..|+.+..++|-+...+..+-. --+. ..+..++.+..+...+........+-+++..+.
T Consensus 12 ~~Wk~laR~LGls~~~I~~ie~-~~~~-~~eq~~~mL~~W~~k~G~~At~~~L~~aL~~~~ 70 (79)
T cd08784 12 DQHKRFFRKLGLSDNEIKVAEL-DNPQ-HRDRVYELLRIWRNKEGRKATLNTLIKALKDLD 70 (79)
T ss_pred HHHHHHHHHcCCCHHHHHHHHH-cCCc-hHHHHHHHHHHHHhccCcCcHHHHHHHHHHHcc
Confidence 5688888888754444444432 2233 457777888888877765444555556665543
No 33
>PF13496 DUF4120: Domain of unknown function (DUF4120)
Probab=30.38 E-value=1.2e+02 Score=17.83 Aligned_cols=29 Identities=14% Similarity=0.304 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHhcCCCChhHhHHHHHHHHHHH
Q psy5127 75 APYDLHEVKAFFKDMDVGSGARSLEQSLETIEL 107 (128)
Q Consensus 75 t~~~~~~~~~f~~~~~~~~~~~~~~~~~e~i~~ 107 (128)
.+|+++++..+.++.. +.+++..+|+.+.
T Consensus 4 cqEhy~kvv~yA~sI~----D~tl~~ClerLk~ 32 (95)
T PF13496_consen 4 CQEHYDKVVQYAESIG----DSTLQKCLERLKQ 32 (95)
T ss_pred hHHHHHHHHHHHHHhc----chHHHHHHHHHHH
Confidence 3789999999987654 4666666776654
No 34
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=30.11 E-value=94 Score=16.51 Aligned_cols=24 Identities=21% Similarity=0.524 Sum_probs=16.9
Q ss_pred hhHHHhhccCCCHHHHHHHHHHHhc
Q psy5127 64 ALIGVVTSHFSAPYDLHEVKAFFKD 88 (128)
Q Consensus 64 ~~l~~~~~~~~t~~~~~~~~~f~~~ 88 (128)
.+....+.+| |+++++.+.+|+++
T Consensus 8 ~~~~~y~~~f-t~~El~~i~~FY~S 31 (64)
T PF09832_consen 8 QMAPIYAEHF-TEEELDAILAFYES 31 (64)
T ss_dssp HHHHHHHHHS--HHHHHHHHHHHHS
T ss_pred HHHHHHHHHC-CHHHHHHHHHHHCC
Confidence 3444455555 88999999999986
No 35
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=29.65 E-value=1e+02 Score=16.79 Aligned_cols=54 Identities=9% Similarity=0.409 Sum_probs=28.1
Q ss_pred ccCCCHHHHHHHHHHHhcCCCC--hhHhHHHHHHHHHHHhHHHHhhCHHHHHHHHhhhc
Q psy5127 71 SHFSAPYDLHEVKAFFKDMDVG--SGARSLEQSLETIELNIHWVRRNEELIFQWLSSYL 127 (128)
Q Consensus 71 ~~~~t~~~~~~~~~f~~~~~~~--~~~~~~~~~~e~i~~n~~w~~~~~~~i~~wl~~~~ 127 (128)
++.-|+.+.+.+..+++....+ -....+..+++.-+.+.+++ ...+.+|-++.+
T Consensus 10 gr~ls~~e~~~i~~~~~~~~~~~evI~~ai~~a~~~~~~~~~Yi---~~Il~~W~~~gi 65 (73)
T TIGR01446 10 GRMLSPFEMEDLKYWLDEFGNSPELIKEALKEAVSNNKANYKYI---DAILNNWKNNGI 65 (73)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHH---HHHHHHHHHcCC
Confidence 4345777888888888765432 12333444443222222222 345677766654
No 36
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=28.69 E-value=1.6e+02 Score=18.68 Aligned_cols=80 Identities=8% Similarity=0.059 Sum_probs=44.4
Q ss_pred cCCchhHHHHHHHHHHhHHHHHHhhCCCccchhhhHHHhhccCCCHHHHHHHHHHHhcC-CCChhHhHHHHHHHHHHHhH
Q psy5127 31 ASNPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTSHFSAPYDLHEVKAFFKDM-DVGSGARSLEQSLETIELNI 109 (128)
Q Consensus 31 ~~~~~g~~~~~~fl~~n~~~i~~~~~~~~~~~~~~l~~~~~~~~t~~~~~~~~~f~~~~-~~~~~~~~~~~~~e~i~~n~ 109 (128)
.+.|...--+.-.+..-|-.|.+.++++ .-..++..+-. .-..-.+.++.-++.. ..+.....+.+....++.+.
T Consensus 57 Gg~p~~~gs~~g~lhr~w~~lks~~~~~--~d~aiL~~~e~--gEd~~~~~y~~aL~~~~l~~~~r~~l~~q~~~i~~~~ 132 (139)
T TIGR02284 57 GGKPEDHGSMVGSLHQFWGKIRATLTPN--DDYVVLEEAER--GEDRAKKAYDETLADQDTPAAARDVALRQYPGVRACH 132 (139)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHHcCC--ChHHHHHHHHH--hHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH
Confidence 3344433334455566666666666531 23334444321 1223344555555553 23356678888899999999
Q ss_pred HHHhh
Q psy5127 110 HWVRR 114 (128)
Q Consensus 110 ~w~~~ 114 (128)
.|++.
T Consensus 133 d~i~~ 137 (139)
T TIGR02284 133 DVIRA 137 (139)
T ss_pred HHHHh
Confidence 99875
No 37
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=28.61 E-value=1.3e+02 Score=17.62 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=13.6
Q ss_pred HHHHHhhcCCCCCCcCcHHHHHH
Q psy5127 6 GLLAKSTLDRDVIKPQDVKDVLS 28 (128)
Q Consensus 6 ~~~L~~~l~~~~v~~qd~~~~~~ 28 (128)
.+++++..+.+.+...|.-.|.+
T Consensus 19 ~~l~d~L~q~~VLt~~d~EeI~~ 41 (86)
T cd08785 19 SRLTPYLRQCKVLDEQDEEEVLS 41 (86)
T ss_pred HHHHHHHHhcCCCCHHHHHHHhC
Confidence 45677777666555555555544
No 38
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=28.41 E-value=1.1e+02 Score=16.58 Aligned_cols=39 Identities=10% Similarity=0.097 Sum_probs=18.4
Q ss_pred HHHHHhhcCCCCCCcCcHHHHHHHhcCCchhHHHHHHHH
Q psy5127 6 GLLAKSTLDRDVIKPQDVKDVLSVVASNPEGNFLAWRHL 44 (128)
Q Consensus 6 ~~~L~~~l~~~~v~~qd~~~~~~~v~~~~~g~~~~~~fl 44 (128)
+.+|....++..+...+...++..+..+...-..+=.|+
T Consensus 3 ~~~l~~l~~g~~Ls~~e~~~~~~~i~~g~~s~~qiaAfL 41 (66)
T PF02885_consen 3 KEILKKLRDGEDLSREEAKAAFDAILDGEVSDAQIAAFL 41 (66)
T ss_dssp HHHHHHHHTT----HHHHHHHHHHHHTTSS-HHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 344444554544677777777777765444433333443
No 39
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=28.24 E-value=1.3e+02 Score=17.71 Aligned_cols=40 Identities=8% Similarity=0.094 Sum_probs=28.2
Q ss_pred HHHHHhHHHHHHhhCCCccchhhhHHHhhccCCCHHHHHHHHH
Q psy5127 42 RHLKAHWKGLQNLFGNGTFSMGALIGVVTSHFSAPYDLHEVKA 84 (128)
Q Consensus 42 ~fl~~n~~~i~~~~~~~~~~~~~~l~~~~~~~~t~~~~~~~~~ 84 (128)
.+|+.|+..+...+......++.++. ..+-|+++++.++.
T Consensus 9 ~~L~~~R~~Lv~~l~~v~~ilD~Ll~---~~Vlt~ee~e~I~~ 48 (94)
T cd08329 9 SLIRKNRMALFQHLTSVLPILDSLLS---ANVITEQEYDVIKQ 48 (94)
T ss_pred HHHHHhHHHHHHHHhhhHHHHHHHHH---cCCCCHHHHHHHHc
Confidence 58999999999888532334555543 33668888888876
No 40
>KOG1756|consensus
Probab=27.54 E-value=1.4e+02 Score=18.98 Aligned_cols=22 Identities=18% Similarity=-0.008 Sum_probs=11.9
Q ss_pred CCchhHHHHHHHHHHhHHHHHH
Q psy5127 32 SNPEGNFLAWRHLKAHWKGLQN 53 (128)
Q Consensus 32 ~~~~g~~~~~~fl~~n~~~i~~ 53 (128)
+.|+-...+.+||..+.-++..
T Consensus 49 gapV~laavLeYL~Aeile~ag 70 (131)
T KOG1756|consen 49 GAPVYLAAVLEYLTAEILELAG 70 (131)
T ss_pred CChHHHHHHHHHHHHHHHHHhH
Confidence 4555555566666655544443
No 41
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=26.81 E-value=1.5e+02 Score=17.85 Aligned_cols=43 Identities=16% Similarity=0.306 Sum_probs=19.3
Q ss_pred HHHHhHHHHHHhhCCCccchhhhHHHhhcc-CCCHHHHHHHHHHHh
Q psy5127 43 HLKAHWKGLQNLFGNGTFSMGALIGVVTSH-FSAPYDLHEVKAFFK 87 (128)
Q Consensus 43 fl~~n~~~i~~~~~~~~~~~~~~l~~~~~~-~~t~~~~~~~~~f~~ 87 (128)
|...-...+..++.+| ....++..++.. -.|+++++++++.++
T Consensus 71 ~~~~~~~~~l~~~~~g--s~~~l~~~l~~~~~ls~~el~~L~~li~ 114 (115)
T PF03965_consen 71 YLAQELRQFLDRLFDG--SIPQLVAALVESEELSPEELEELRKLID 114 (115)
T ss_dssp HHHHHHHHHHHHHSTT--HHHHHHHHHHHCT-S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--CHHHHHHHHHhcCCCCHHHHHHHHHHHc
Confidence 3444444444444322 344444444333 346666666666553
No 42
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=26.61 E-value=98 Score=15.58 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=15.3
Q ss_pred CCHHHHHHHHHHHhcCCCC
Q psy5127 74 SAPYDLHEVKAFFKDMDVG 92 (128)
Q Consensus 74 ~t~~~~~~~~~f~~~~~~~ 92 (128)
-+++++..|+.+|..++-+
T Consensus 7 ~~~~~~~~L~~~f~~~~~P 25 (56)
T smart00389 7 FTPEQLEELEKEFQKNPYP 25 (56)
T ss_pred CCHHHHHHHHHHHHhCCCC
Confidence 4778899999999887754
No 43
>cd05130 RasGAP_Neurofibromin Neurofibromin is the product of the neurofibromatosis type 1 gene (NF1) and shares a region of similarity with catalytic domain of the mammalian p120RasGAP protein and an extended similarity with the Saccharomyces cerevisiae RasGAP proteins Ira1 and Ira2. Neurofibromin has been shown to function as a GAP (GTPase-activating protein) which inhibits low molecular weight G proteins such as Ras by stimulating their intrinsic GTPase activity. NF1 is a common genetic disorder characterized by various symptoms ranging from predisposition for the development of tumors to learning disability or mental retardation. Loss of neurofibromin activity can be correlated to the increase in Ras-GTP concentration in neurofibromas of NF1 of patients, supporting the notion that unregulated Ras signaling may contribute to their development.
Probab=26.52 E-value=1.3e+02 Score=22.22 Aligned_cols=94 Identities=12% Similarity=0.172 Sum_probs=44.6
Q ss_pred HHHhcCCchhHHHHHHHHHHhHHHHHHhhCCCc----cchhh--hHHHhhccCCCHHHHHHHHHHHhcCCCChhHhH---
Q psy5127 27 LSVVASNPEGNFLAWRHLKAHWKGLQNLFGNGT----FSMGA--LIGVVTSHFSAPYDLHEVKAFFKDMDVGSGARS--- 97 (128)
Q Consensus 27 ~~~v~~~~~g~~~~~~fl~~n~~~i~~~~~~~~----~~~~~--~l~~~~~~~~t~~~~~~~~~f~~~~~~~~~~~~--- 97 (128)
+.++..=|.|...++..+++ .+.++|+... ..+++ ++..++..+.+++.+.-+ ..++.+...|+
T Consensus 149 ~~S~~~~P~~lR~i~~~l~~---~v~~kFP~~~~~~~~~Vg~fiFLRfi~PAIvsP~~f~l~----~~~p~~~~rR~L~l 221 (329)
T cd05130 149 INSSSEFPPQLRSVCHCLYQ---VVSQRFPNKAQNSIGAVGSAMFLRFINPAIVSPYEAGIL----DKKPPPRIERGLKL 221 (329)
T ss_pred HHhHHhCCHHHHHHHHHHHH---HHHHHCCCcccchHHHHHHHHHHHHhhhhhCCccccCCC----CCCCCHHHHhHHHH
Confidence 34444556666655555543 3445665411 01111 223344555565554332 23333333333
Q ss_pred HHHHHHHHHHhHHH-HhhCHHHHHHHHhhhc
Q psy5127 98 LEQSLETIELNIHW-VRRNEELIFQWLSSYL 127 (128)
Q Consensus 98 ~~~~~e~i~~n~~w-~~~~~~~i~~wl~~~~ 127 (128)
+++.+..+.++... .+.+...+..|+.++.
T Consensus 222 IAKvLQnlAN~~~F~KE~~M~~lN~fi~~~~ 252 (329)
T cd05130 222 MSKILQSIANHVLFTKEEHMRPFNDFVKSNF 252 (329)
T ss_pred HHHHHHHHhccCccCCcHHHHHHHHHHHHHH
Confidence 45555555555444 4456667777776653
No 44
>PF05106 Phage_holin_3: Phage holin family (Lysis protein S); InterPro: IPR006481 This entry is represented by the Bacteriophage lambda, GpS. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=25.36 E-value=97 Score=18.59 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=17.3
Q ss_pred CCchhHHHHHHHHHHhHHHHH
Q psy5127 32 SNPEGNFLAWRHLKAHWKGLQ 52 (128)
Q Consensus 32 ~~~~g~~~~~~fl~~n~~~i~ 52 (128)
.+|.--..+++|+.+||+.+.
T Consensus 3 k~P~~W~~ll~wl~~~~~~~~ 23 (100)
T PF05106_consen 3 KNPDFWAQLLAWLQSHWPQIY 23 (100)
T ss_pred CCccHHHHHHHHHHHHHHHHH
Confidence 467778889999999998765
No 45
>PF12875 DUF3826: Protein of unknown function (DUF3826); InterPro: IPR024284 This is a putative sugar-binding family.; PDB: 3KDW_A 3G6I_A.
Probab=25.14 E-value=1e+02 Score=20.92 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=16.7
Q ss_pred HHHhHHHHhhCHHHHHHHHhhh
Q psy5127 105 IELNIHWVRRNEELIFQWLSSY 126 (128)
Q Consensus 105 i~~n~~w~~~~~~~i~~wl~~~ 126 (128)
++.--.|...+++.|.+||.++
T Consensus 150 ~~~kha~F~kYKgrinnYl~~~ 171 (188)
T PF12875_consen 150 SKKKHAWFGKYKGRINNYLSKR 171 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 3445578888899999998764
No 46
>PRK04654 sec-independent translocase; Provisional
Probab=25.06 E-value=2.4e+02 Score=19.60 Aligned_cols=15 Identities=13% Similarity=0.262 Sum_probs=6.8
Q ss_pred CCCHHHHHHHHHHHh
Q psy5127 73 FSAPYDLHEVKAFFK 87 (128)
Q Consensus 73 ~~t~~~~~~~~~f~~ 87 (128)
+..+.+.++++.-+.
T Consensus 50 l~~El~~~ELrk~l~ 64 (214)
T PRK04654 50 LERELEAEELKRSLQ 64 (214)
T ss_pred HHHhhhHHHHHHHHH
Confidence 333444455554433
No 47
>PF09337 zf-H2C2: His(2)-Cys(2) zinc finger; InterPro: IPR015416 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents an H2C2-type zinc finger that binds to histone upstream activating sequence (UAS) elements found in histone gene promoters []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].
Probab=24.18 E-value=81 Score=15.42 Aligned_cols=27 Identities=11% Similarity=0.287 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhHHHHhhCHHHHHHHHh
Q psy5127 97 SLEQSLETIELNIHWVRRNEELIFQWLS 124 (128)
Q Consensus 97 ~~~~~~e~i~~n~~w~~~~~~~i~~wl~ 124 (128)
++.+++..|+.+.-|. .-..+|.+|++
T Consensus 7 Gi~kT~~~i~~~y~W~-gm~~~V~~~ir 33 (39)
T PF09337_consen 7 GINKTTAKISQRYHWP-GMKKDVRRVIR 33 (39)
T ss_pred CHHHHHHHHHHhheec-CHHHHHHHHHh
Confidence 4556677777777776 44555556554
No 48
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=23.44 E-value=67 Score=19.77 Aligned_cols=50 Identities=18% Similarity=0.203 Sum_probs=34.1
Q ss_pred hccCCCHHHHHHHHHHHhcCCCChhHhHHHHHHHHHHHhHHHHhhCHHHHHHHHh
Q psy5127 70 TSHFSAPYDLHEVKAFFKDMDVGSGARSLEQSLETIELNIHWVRRNEELIFQWLS 124 (128)
Q Consensus 70 ~~~~~t~~~~~~~~~f~~~~~~~~~~~~~~~~~e~i~~n~~w~~~~~~~i~~wl~ 124 (128)
+.++.=+..+++...|++++ ...+...++.+..++.+..+....+..-++
T Consensus 75 G~g~~vE~~~~eA~~~l~~~-----~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 75 GSGYYVEKDAEEAIEFLKKR-----IEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred CCCEEEEecHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444456677788888764 355666778888888888887777766554
No 49
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=23.37 E-value=1.5e+02 Score=16.51 Aligned_cols=40 Identities=8% Similarity=0.180 Sum_probs=27.2
Q ss_pred HHHHHHhHHHHHHhhCCCccchhhhHHH-hhccCCCHHHHHHHHH
Q psy5127 41 WRHLKAHWKGLQNLFGNGTFSMGALIGV-VTSHFSAPYDLHEVKA 84 (128)
Q Consensus 41 ~~fl~~n~~~i~~~~~~~~~~~~~~l~~-~~~~~~t~~~~~~~~~ 84 (128)
|+.+..|+..+.+.+. ....++.. ....+-|+++++++..
T Consensus 1 ~~~L~~~r~~Lv~~l~----~~~~ild~L~~~~vlt~~e~e~I~~ 41 (85)
T PF00619_consen 1 QELLRKNRQELVEDLD----DLDDILDHLLSRGVLTEEEYEEIRS 41 (85)
T ss_dssp HHHHHHTHHHHHHHSS----HHHHHHHHHHHTTSSSHHHHHHHHT
T ss_pred CHHHHHhHHHHHHHhC----cHHHHHHHHHHCCCCCHHHHHHHHc
Confidence 6788999999988876 23333333 2345668888887776
No 50
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=23.30 E-value=2e+02 Score=17.96 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=21.5
Q ss_pred CCchhHHHHHHHHHHhHHHHHHhhC
Q psy5127 32 SNPEGNFLAWRHLKAHWKGLQNLFG 56 (128)
Q Consensus 32 ~~~~g~~~~~~fl~~n~~~i~~~~~ 56 (128)
+||.+.-.+...+...|..+...+.
T Consensus 57 ~nPlnaF~LIrRl~~dW~~~~~~~~ 81 (134)
T PF08336_consen 57 SNPLNAFSLIRRLHQDWPKWEKLME 81 (134)
T ss_pred hcHHHHHHHHHHHHHhhhhHHHHHH
Confidence 6899999999999999999876654
No 51
>PF15572 Imm26: Immunity protein 26
Probab=22.46 E-value=49 Score=19.87 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHhHHHH
Q psy5127 35 EGNFLAWRHLKAHWKGL 51 (128)
Q Consensus 35 ~g~~~~~~fl~~n~~~i 51 (128)
.++.+--+||.+||+.+
T Consensus 68 ~~~aiSt~Wli~NW~kw 84 (96)
T PF15572_consen 68 EGRAISTEWLIENWEKW 84 (96)
T ss_pred ccccccHHHHHHHHHHh
Confidence 34456678999999985
No 52
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=22.34 E-value=2.5e+02 Score=19.58 Aligned_cols=11 Identities=27% Similarity=0.283 Sum_probs=5.1
Q ss_pred HHHHHHhhcCC
Q psy5127 5 DGLLAKSTLDR 15 (128)
Q Consensus 5 l~~~L~~~l~~ 15 (128)
++..|-++++.
T Consensus 128 aDsILlYa~~r 138 (215)
T COG2231 128 ADSILLYALDR 138 (215)
T ss_pred HHHHHHHHhcC
Confidence 34444444444
No 53
>PF13808 DDE_Tnp_1_assoc: DDE_Tnp_1-associated
Probab=22.08 E-value=1.8e+02 Score=16.90 Aligned_cols=30 Identities=17% Similarity=0.051 Sum_probs=24.3
Q ss_pred HHhcCCchhHHHHHHHHHHhHHHHHHhhCC
Q psy5127 28 SVVASNPEGNFLAWRHLKAHWKGLQNLFGN 57 (128)
Q Consensus 28 ~~v~~~~~g~~~~~~fl~~n~~~i~~~~~~ 57 (128)
.++..+..+...+.+|..++-+.+.+.++-
T Consensus 30 ~a~l~G~~~~~~i~~~~~~~~~~l~~~l~~ 59 (90)
T PF13808_consen 30 CAVLCGADSWREIAEWARAHEEWLRKRLGL 59 (90)
T ss_pred HHHHHccccHHHHHHHHHHhHHHHHHhcCC
Confidence 355567788899999999999999887764
No 54
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=21.99 E-value=1.1e+02 Score=16.52 Aligned_cols=18 Identities=6% Similarity=0.123 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHHhcCCC
Q psy5127 74 SAPYDLHEVKAFFKDMDV 91 (128)
Q Consensus 74 ~t~~~~~~~~~f~~~~~~ 91 (128)
-|.++.+++++||...+-
T Consensus 8 Ft~~Q~~~Le~~fe~~~y 25 (58)
T TIGR01565 8 FTAEQKEKMRDFAEKLGW 25 (58)
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 478999999999987664
No 55
>smart00139 MyTH4 Domain in Myosin and Kinesin Tails. Domain present twice in myosin-VIIa, and also present in 3 other myosins.
Probab=21.96 E-value=2.3e+02 Score=18.13 Aligned_cols=32 Identities=9% Similarity=0.232 Sum_probs=14.3
Q ss_pred HHHHHHHhhcCCCCCCcCcHHHHHHHhcCCch
Q psy5127 4 MDGLLAKSTLDRDVIKPQDVKDVLSVVASNPE 35 (128)
Q Consensus 4 ll~~~L~~~l~~~~v~~qd~~~~~~~v~~~~~ 35 (128)
++..++...++...+|+.=+..++....+||.
T Consensus 47 l~~~i~~~~~~~~~LrDEiy~QLiKQtt~Np~ 78 (144)
T smart00139 47 LVQFILQKGLAHPELRDEIYCQLIKQLTDNPS 78 (144)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHhCCCC
Confidence 33344444443322444444445555554443
No 56
>PF12335 SBF2: Myotubularin protein ; InterPro: IPR022096 This domain family is found in eukaryotes, and is approximately 220 amino acids in length. The family is found in association with PF02141 from PFAM, PF03456 from PFAM, PF03455 from PFAM. This family is the middle region of SBF2, a member of the myotubularin family. Myotubularin-related proteins have been suggested to work in phosphoinositide-mediated signalling events that may also convey control of myelination. Mutations of SBF2 are implicated in Charcot-Marie-Tooth disease.
Probab=21.73 E-value=61 Score=22.65 Aligned_cols=48 Identities=10% Similarity=0.055 Sum_probs=31.8
Q ss_pred hHHHHHHHhhcCCCCCCcCcHHHHHHHhcCCchhHHHHHHHHHHhHHH
Q psy5127 3 AMDGLLAKSTLDRDVIKPQDVKDVLSVVASNPEGNFLAWRHLKAHWKG 50 (128)
Q Consensus 3 ~ll~~~L~~~l~~~~v~~qd~~~~~~~v~~~~~g~~~~~~fl~~n~~~ 50 (128)
|.++..+.+++++..+....+...+..+..+..||..+.+.|..+...
T Consensus 25 evlr~ci~~if~~k~~e~~k~~~av~~~lk~~~aR~~~~~~L~~~~~~ 72 (225)
T PF12335_consen 25 EVLRNCISFIFDNKILEARKSLPAVLRALKSRSARQAFCRELSKHVKS 72 (225)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHhc
Confidence 678889999998653222332333344457788999888888877554
No 57
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=21.53 E-value=1.5e+02 Score=18.90 Aligned_cols=28 Identities=25% Similarity=0.602 Sum_probs=15.7
Q ss_pred HHHHHhHHHHHH-hhCCCccchhhhHHHh
Q psy5127 42 RHLKAHWKGLQN-LFGNGTFSMGALIGVV 69 (128)
Q Consensus 42 ~fl~~n~~~i~~-~~~~~~~~~~~~l~~~ 69 (128)
++.+++|+.|.. .||.|+.++..++..+
T Consensus 95 n~Wr~ewd~iE~~mFGD~pnSmkkMl~nv 123 (132)
T PF09432_consen 95 NYWRKEWDNIEMLMFGDGPNSMKKMLQNV 123 (132)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 455667777753 4554555555555443
No 58
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=21.52 E-value=3.1e+02 Score=19.54 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=20.3
Q ss_pred CCcCcHHHHHHHhcCCchhHHHHHHHHHHhHHHHHHhhCC
Q psy5127 18 IKPQDVKDVLSVVASNPEGNFLAWRHLKAHWKGLQNLFGN 57 (128)
Q Consensus 18 v~~qd~~~~~~~v~~~~~g~~~~~~fl~~n~~~i~~~~~~ 57 (128)
|.+++...++.+++..-.|+---+.-...+.+.+...+..
T Consensus 10 vdP~kLn~tL~ala~Al~GrG~~lg~~l~~l~~~l~~ln~ 49 (267)
T PF11887_consen 10 VDPAKLNATLSALATALDGRGEQLGETLDDLNTLLATLNP 49 (267)
T ss_pred CCHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHhc
Confidence 5555666666655533334433344444555555555544
No 59
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=21.00 E-value=3.6e+02 Score=20.08 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=22.2
Q ss_pred cCcHHHHHHHhc-CCchhHH-HHHHHHHHhHHHHHHhh
Q psy5127 20 PQDVKDVLSVVA-SNPEGNF-LAWRHLKAHWKGLQNLF 55 (128)
Q Consensus 20 ~qd~~~~~~~v~-~~~~g~~-~~~~fl~~n~~~i~~~~ 55 (128)
..|+..++..+. ..+.++. .+.+|+.+|++.|...+
T Consensus 93 rKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L 130 (335)
T PF08569_consen 93 RKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDIL 130 (335)
T ss_dssp HHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHH
T ss_pred cccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHH
Confidence 358888998886 4445544 68999999966665433
No 60
>PF03564 DUF1759: Protein of unknown function (DUF1759); InterPro: IPR005312 This is a small family of proteins of unknown function.
Probab=20.52 E-value=2.3e+02 Score=17.62 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=16.2
Q ss_pred HHHHHHhhCCCccchhhhHHHhhccC-CCHHHHHHHHHHHh
Q psy5127 48 WKGLQNLFGNGTFSMGALIGVVTSHF-SAPYDLHEVKAFFK 87 (128)
Q Consensus 48 ~~~i~~~~~~~~~~~~~~l~~~~~~~-~t~~~~~~~~~f~~ 87 (128)
|+.+..+||........++..+.+-- ......+.+..|..
T Consensus 60 ~~~L~~~yg~~~~i~~~~~~~l~~l~~~~~~d~~~L~~~~~ 100 (145)
T PF03564_consen 60 WELLEERYGNPRRIIQALLEELRNLPPISNDDPEALRSLVD 100 (145)
T ss_pred HHHHHHHhCCchHHHHHHHHHHhccccccchhHHHHHHHHH
Confidence 33444555542122333333332221 23444555555544
No 61
>PF14778 ODR4-like: Olfactory receptor 4-like
Probab=20.33 E-value=67 Score=24.03 Aligned_cols=30 Identities=10% Similarity=0.240 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhHHHHHHhhCCCccchhhhH
Q psy5127 37 NFLAWRHLKAHWKGLQNLFGNGTFSMGALI 66 (128)
Q Consensus 37 ~~~~~~fl~~n~~~i~~~~~~~~~~~~~~l 66 (128)
.++=-+|+.+|+..+...+++|...++-++
T Consensus 41 ~~id~~WVaeHA~qVsRMLPGGi~VlGifv 70 (362)
T PF14778_consen 41 KDIDEEWVAEHARQVSRMLPGGISVLGIFV 70 (362)
T ss_pred cccCHHHHHHHHHHHHhhCCCCcEEEEEEE
Confidence 345568999999999999998765555443
Done!