Query psy5127
Match_columns 128
No_of_seqs 110 out of 1043
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 18:01:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5127.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5127hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rjo_A Endoplasmic reticulum a 100.0 2.7E-28 9.2E-33 179.9 13.6 126 2-127 283-409 (419)
2 3se6_A Endoplasmic reticulum a 99.9 4.2E-25 1.4E-29 176.0 12.6 125 2-126 834-959 (967)
3 4fke_A Aminopeptidase N; zinc 99.9 5.2E-25 1.8E-29 174.9 11.6 126 2-127 774-902 (909)
4 2xdt_A Endoplasmic reticulum a 99.9 4.8E-24 1.7E-28 169.1 13.2 126 2-127 766-892 (897)
5 1z5h_A Tricorn protease intera 99.8 4.3E-19 1.5E-23 139.2 7.5 113 2-118 665-777 (780)
6 3kat_A Nacht, LRR and PYD doma 75.0 8.6 0.00029 22.7 5.1 47 34-84 12-58 (107)
7 2czy_A Paired amphipathic heli 73.0 7.2 0.00025 21.5 4.2 50 37-90 4-57 (77)
8 4fqn_A Malcavernin; helical do 72.7 11 0.00039 21.7 5.3 78 3-91 16-93 (98)
9 3oao_A Uncharacterized protein 70.6 17 0.00057 22.7 7.7 89 34-123 41-130 (147)
10 1g1e_B SIN3A; four-helix bundl 57.5 10 0.00036 21.4 2.9 17 74-90 60-76 (89)
11 1e91_A Paired amphipathic heli 56.2 19 0.00065 20.1 3.9 53 34-90 4-70 (85)
12 4etr_A Putative uncharacterize 55.9 33 0.0011 21.1 5.4 37 80-116 113-149 (153)
13 2cr7_A Paired amphipathic heli 55.1 9.6 0.00033 21.1 2.4 20 71-90 44-63 (80)
14 2f05_A Paired amphipathic heli 51.9 14 0.00047 21.7 2.9 15 76-90 56-70 (105)
15 2ke4_A CDC42-interacting prote 36.8 39 0.0013 19.5 3.1 53 73-125 35-87 (98)
16 2khr_A Protein MBTH; sideropho 33.6 11 0.00039 20.6 0.5 21 32-52 43-63 (74)
17 2gtq_A Aminopeptidase N; alani 33.0 27 0.00093 28.1 2.7 52 2-53 757-814 (867)
18 2xqo_A Cellulosome enzyme, doc 30.9 41 0.0014 21.9 2.8 38 19-57 42-79 (243)
19 1upk_A MO25 protein; transfera 30.6 1.2E+02 0.0041 21.7 5.4 100 20-127 95-207 (341)
20 1ioj_A APOC-I; apolipoprotein, 30.5 47 0.0016 17.2 2.5 20 38-57 36-55 (57)
21 3fzg_A 16S rRNA methylase; met 29.8 9.8 0.00034 25.1 -0.3 40 46-88 3-42 (200)
22 2kvc_A Putative uncharacterize 27.7 95 0.0033 18.1 6.9 84 1-91 4-91 (103)
23 2dak_A Ubiquitin carboxyl-term 27.5 63 0.0022 16.6 2.8 40 3-50 11-50 (63)
24 1q87_A 39 kDa initiator bindin 27.2 55 0.0019 21.7 2.9 44 33-77 28-71 (221)
25 2ekk_A UBA domain from E3 ubiq 27.0 48 0.0016 15.9 2.1 12 36-47 35-46 (47)
26 2dai_A Ubadc1, ubiquitin assoc 26.7 65 0.0022 17.8 2.9 15 35-49 55-69 (83)
27 2dkl_A Trinucleotide repeat co 25.6 50 0.0017 18.4 2.2 41 3-51 23-63 (85)
28 3hpw_C Protein CCDA; alpha+bet 24.4 41 0.0014 15.6 1.5 15 108-122 5-19 (36)
29 2da4_A Hypothetical protein DK 24.3 90 0.0031 16.6 5.1 16 74-89 15-30 (80)
30 2lky_A Uncharacterized protein 24.0 1.2E+02 0.0041 18.0 7.3 84 1-91 6-93 (112)
31 2zc2_A DNAD-like replication p 23.6 92 0.0031 16.5 5.5 55 70-127 14-70 (78)
32 3kdw_A Putative sugar binding 23.6 75 0.0026 21.0 3.1 22 105-126 178-199 (221)
33 1wji_A Tudor domain containing 22.4 65 0.0022 16.8 2.2 13 36-48 36-48 (63)
34 3oq9_A Tumor necrosis factor r 22.4 1.1E+02 0.0038 17.0 4.4 59 46-105 13-71 (86)
35 2da3_A Alpha-fetoprotein enhan 21.8 1E+02 0.0035 16.3 3.9 20 73-92 23-42 (80)
36 1wiv_A UBP14, ubiquitin-specif 20.6 92 0.0031 16.7 2.6 13 36-48 56-68 (73)
No 1
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=99.96 E-value=2.7e-28 Score=179.88 Aligned_cols=126 Identities=33% Similarity=0.548 Sum_probs=117.3
Q ss_pred HhHHHHHHHhhcCCCCCCcCcHHHHHHHhcCCchhHHHHHHHHHHhHHHHHHhhCCCccchhhhHHHhhccCCCHHHHHH
Q psy5127 2 RAMDGLLAKSTLDRDVIKPQDVKDVLSVVASNPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTSHFSAPYDLHE 81 (128)
Q Consensus 2 ~~ll~~~L~~~l~~~~v~~qd~~~~~~~v~~~~~g~~~~~~fl~~n~~~i~~~~~~~~~~~~~~l~~~~~~~~t~~~~~~ 81 (128)
+++++++|+++++++.||+||+..++.++++||.|++++|+|+++||+.|.++++++++.+++++..+++.|+|++++++
T Consensus 283 ~~ll~~~L~~~l~~~~ir~qD~~~~~~~v~~n~~g~~~aw~fl~~nw~~l~~~~~~~~~~~~~~i~~~~~~~~t~~~l~e 362 (419)
T 3rjo_A 283 KEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEE 362 (419)
T ss_dssp HHHHHHHHHHHHHTSSSCGGGHHHHHHHHHTSTTTHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTTTCCSHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHhCcCchhHHHHHHHHhhcCCCHHHHHH
Confidence 57899999999988767999999999999999999999999999999999999987777899999999999999999999
Q ss_pred HHHHHhcCCCCh-hHhHHHHHHHHHHHhHHHHhhCHHHHHHHHhhhc
Q psy5127 82 VKAFFKDMDVGS-GARSLEQSLETIELNIHWVRRNEELIFQWLSSYL 127 (128)
Q Consensus 82 ~~~f~~~~~~~~-~~~~~~~~~e~i~~n~~w~~~~~~~i~~wl~~~~ 127 (128)
+++||++++..+ ..++++|++|+|+.|++|++++.+.|.+||+++.
T Consensus 363 ~~~Ff~~~~~~~~~~~~~~qale~i~~ni~W~~~~~~~v~~wL~~~~ 409 (419)
T 3rjo_A 363 VKGFFSSLKENGSQLRCVQQTIETIEENIGWMDKNFDKIRVWLQSEK 409 (419)
T ss_dssp HHHHHHTTTTC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999987765 6899999999999999999999999999998763
No 2
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=99.92 E-value=4.2e-25 Score=175.97 Aligned_cols=125 Identities=30% Similarity=0.540 Sum_probs=116.6
Q ss_pred HhHHHHHHHhhcCCCCCCcCcHHHHHHHhcCCchhHHHHHHHHHHhHHHHHHhhCCCccchhhhHHHhhccCCCHHHHHH
Q psy5127 2 RAMDGLLAKSTLDRDVIKPQDVKDVLSVVASNPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTSHFSAPYDLHE 81 (128)
Q Consensus 2 ~~ll~~~L~~~l~~~~v~~qd~~~~~~~v~~~~~g~~~~~~fl~~n~~~i~~~~~~~~~~~~~~l~~~~~~~~t~~~~~~ 81 (128)
+++|+++|+++++++.||+||+..++.++++||.|++++|+|+++||+.|.++++.+.+.+.+++..+++.|+|++++++
T Consensus 834 ~~ll~~~L~~~l~~~~i~~qd~~~~~~~v~~n~~g~~~~w~f~~~nw~~i~~~~~~~~~~~~~~i~~~~~~~~t~~~l~~ 913 (967)
T 3se6_A 834 QEKLLKLIELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTTAHFSSKDKLQE 913 (967)
T ss_dssp HHHHHHHHHHHHHCSSSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHTTTTTCCSHHHHHH
T ss_pred HHHHHHHHHHHhCcCcCcHhHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhccCCHHHHHH
Confidence 47899999999988669999999999999999999999999999999999999987677899999999999999999999
Q ss_pred HHHHHhcCCCCh-hHhHHHHHHHHHHHhHHHHhhCHHHHHHHHhhh
Q psy5127 82 VKAFFKDMDVGS-GARSLEQSLETIELNIHWVRRNEELIFQWLSSY 126 (128)
Q Consensus 82 ~~~f~~~~~~~~-~~~~~~~~~e~i~~n~~w~~~~~~~i~~wl~~~ 126 (128)
+++||++++..+ ..++++|++|.|+.|++|++++.+.|.+||.+|
T Consensus 914 ~~~f~~~~~~~~~~~~~~~q~le~i~~ni~W~~~~~~~i~~wl~~~ 959 (967)
T 3se6_A 914 VKLFFESLEAQGSHLDIFQTVLETITKNIKWLEKNLPTLRTWLMVN 959 (967)
T ss_dssp HHHHHHHSCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999887654 468999999999999999999999999999876
No 3
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=99.92 E-value=5.2e-25 Score=174.86 Aligned_cols=126 Identities=35% Similarity=0.594 Sum_probs=117.5
Q ss_pred HhHHHHHHHhhcCCCCCCcCcHHHHHHHhcCCchhHHHHHHHHHHhHHHHHHhhCCCccchhhhHHHhhccCCCHHHHHH
Q psy5127 2 RAMDGLLAKSTLDRDVIKPQDVKDVLSVVASNPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTSHFSAPYDLHE 81 (128)
Q Consensus 2 ~~ll~~~L~~~l~~~~v~~qd~~~~~~~v~~~~~g~~~~~~fl~~n~~~i~~~~~~~~~~~~~~l~~~~~~~~t~~~~~~ 81 (128)
+++++++|+++++++.||+||+..++.++++||.|++++|+|+++||+.|.++++++...+.+++..++++++|++++++
T Consensus 774 ~~~l~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~~t~~~~~~ 853 (909)
T 4fke_A 774 VWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFSSEFELQQ 853 (909)
T ss_dssp HHHHHHHHHHTTCTTTSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTCCSHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCHHHHHH
Confidence 47899999999998779999999999999999999999999999999999999987777899999999999999999999
Q ss_pred HHHHHhcCCCC---hhHhHHHHHHHHHHHhHHHHhhCHHHHHHHHhhhc
Q psy5127 82 VKAFFKDMDVG---SGARSLEQSLETIELNIHWVRRNEELIFQWLSSYL 127 (128)
Q Consensus 82 ~~~f~~~~~~~---~~~~~~~~~~e~i~~n~~w~~~~~~~i~~wl~~~~ 127 (128)
+++||++++.. +..+++++++|.|+.|++|++++.+.|.+||++|-
T Consensus 854 ~~~f~~~~~~~~~~~~~~~~~~~le~i~~n~~w~~~~~~~i~~wL~~n~ 902 (909)
T 4fke_A 854 LEQFKKNNMDVGFGSGTRALEQALEKTKANIKWVKENKEVVLNWFIEHS 902 (909)
T ss_dssp HHHHHTTCSSSCCGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhCCccccchHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhcC
Confidence 99999988754 35799999999999999999999999999999873
No 4
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=99.91 E-value=4.8e-24 Score=169.12 Aligned_cols=126 Identities=33% Similarity=0.553 Sum_probs=116.1
Q ss_pred HhHHHHHHHhhcCCCCCCcCcHHHHHHHhcCCchhHHHHHHHHHHhHHHHHHhhCCCccchhhhHHHhhccCCCHHHHHH
Q psy5127 2 RAMDGLLAKSTLDRDVIKPQDVKDVLSVVASNPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTSHFSAPYDLHE 81 (128)
Q Consensus 2 ~~ll~~~L~~~l~~~~v~~qd~~~~~~~v~~~~~g~~~~~~fl~~n~~~i~~~~~~~~~~~~~~l~~~~~~~~t~~~~~~ 81 (128)
+++|+++|+++++++.|++||+..++.++++||.|++++|+|+++||+.|.++++++...+.+++..++++++|++++++
T Consensus 766 ~~~l~~~L~~~~~~~~i~~qd~~~~~~~v~~n~~g~~~~~~~~~~n~~~i~~~~~~~~~~~~~~i~~~~~~~~t~~~~~~ 845 (897)
T 2xdt_A 766 KEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTNQFSTRTRLEE 845 (897)
T ss_dssp HHHHHHHHHHHHHCSSSCGGGHHHHHHHHHTSTTTHHHHHHHHHHTHHHHHHHHCTTCHHHHHHHHHTTTTCCSHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHhccCCHHHHHH
Confidence 47899999999987669999999999999999999999999999999999999986666889999999999999999999
Q ss_pred HHHHHhcCCCC-hhHhHHHHHHHHHHHhHHHHhhCHHHHHHHHhhhc
Q psy5127 82 VKAFFKDMDVG-SGARSLEQSLETIELNIHWVRRNEELIFQWLSSYL 127 (128)
Q Consensus 82 ~~~f~~~~~~~-~~~~~~~~~~e~i~~n~~w~~~~~~~i~~wl~~~~ 127 (128)
+++||+.++.. +..+++++++|.|+.|++|++++.+.|.+||+++.
T Consensus 846 ~~~f~~~~~~~~~~~~~~~~~le~i~~n~~w~~~~~~~i~~wl~~~~ 892 (897)
T 2xdt_A 846 VKGFFSSLKENGSQLRCVQQTIETIEENIGWMDKNFDKIRVWLQSEK 892 (897)
T ss_dssp HHHHHHHTGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhhh
Confidence 99999986433 45789999999999999999999999999999875
No 5
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=99.77 E-value=4.3e-19 Score=139.24 Aligned_cols=113 Identities=12% Similarity=0.119 Sum_probs=103.0
Q ss_pred HhHHHHHHHhhcCCCCCCcCcHHHHHHHhcCCchhHHHHHHHHHHhHHHHHHhhCCCccchhhhHHHhhccCCCHHHHHH
Q psy5127 2 RAMDGLLAKSTLDRDVIKPQDVKDVLSVVASNPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTSHFSAPYDLHE 81 (128)
Q Consensus 2 ~~ll~~~L~~~l~~~~v~~qd~~~~~~~v~~~~~g~~~~~~fl~~n~~~i~~~~~~~~~~~~~~l~~~~~~~~t~~~~~~ 81 (128)
+++++++|+++++ +.+++||...++.++++||.|++++|+|+++||+.|.++++ +...+.+++..+ +.++|++ +++
T Consensus 665 ~~~~~~~l~~~~~-~~i~~qd~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~-~~~~~~~~i~~~-~~~~t~~-~~~ 740 (780)
T 1z5h_A 665 NTDLSTVYGMVEK-TEIKKQDMISFFSSALETLPGREFIFANLDRIIRLVIRYFT-GNRTASRTVEMM-IPVIGLD-HPD 740 (780)
T ss_dssp HHHHHHHHHHHHT-TSSCHHHHHHHHHHHTTSHHHHHHHHHTHHHHHHHHHHHHC-SSSHHHHHHHHH-HHHHHHH-CTT
T ss_pred HHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHhC-CchhHHHHHHhh-hccCCHH-HHH
Confidence 4689999999998 45999999999999999999999999999999999999997 456789999999 8899999 999
Q ss_pred HHHHHhcCCCChhHhHHHHHHHHHHHhHHHHhhCHHH
Q psy5127 82 VKAFFKDMDVGSGARSLEQSLETIELNIHWVRRNEEL 118 (128)
Q Consensus 82 ~~~f~~~~~~~~~~~~~~~~~e~i~~n~~w~~~~~~~ 118 (128)
+++||+.++.++..++++|++|.|+.|++|++++.+.
T Consensus 741 ~~~f~~~~~~~~~~~~~~~~~e~i~~n~~w~~~~~~~ 777 (780)
T 1z5h_A 741 AEDIVRNIGSKNISMGLAKGIEMLAVNRKLVERIRQT 777 (780)
T ss_dssp HHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHccCCCccHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999998776677899999999999999999987653
No 6
>3kat_A Nacht, LRR and PYD domains-containing protein 1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 3.10A {Homo sapiens}
Probab=75.04 E-value=8.6 Score=22.68 Aligned_cols=47 Identities=11% Similarity=0.043 Sum_probs=31.3
Q ss_pred chhHHHHHHHHHHhHHHHHHhhCCCccchhhhHHHhhccCCCHHHHHHHHH
Q psy5127 34 PEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTSHFSAPYDLHEVKA 84 (128)
Q Consensus 34 ~~g~~~~~~fl~~n~~~i~~~~~~~~~~~~~~l~~~~~~~~t~~~~~~~~~ 84 (128)
|.....-..|+++|...+.++.. .+..++..+.+.+-|+++++.+.+
T Consensus 12 ~~~~~~~~~fv~~hR~~Li~rv~----~V~~ILD~Ll~~VLteee~e~I~a 58 (107)
T 3kat_A 12 PLDAPQLLHFVDQYREQLIARVT----SVEVVLDKLHGQVLSQEQYERVLA 58 (107)
T ss_dssp -------CHHHHHTHHHHHTTCC----CHHHHHHHHTTTTSCHHHHHHHHH
T ss_pred CCCCcccchHHHHHHHHHHHHHh----hHHHHHHHHHHhhCCHHHHHHHHh
Confidence 33333345799999999988775 366666666666778899988875
No 7
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=72.96 E-value=7.2 Score=21.46 Aligned_cols=50 Identities=14% Similarity=0.196 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhHHHHHHhhCCCccchh---hhHHHh-hccCCCHHHHHHHHHHHhcCC
Q psy5127 37 NFLAWRHLKAHWKGLQNLFGNGTFSMG---ALIGVV-TSHFSAPYDLHEVKAFFKDMD 90 (128)
Q Consensus 37 ~~~~~~fl~~n~~~i~~~~~~~~~~~~---~~l~~~-~~~~~t~~~~~~~~~f~~~~~ 90 (128)
.+-+.+|+. .++.+|...+.... .++... .+...+.+-++++..+|.+|+
T Consensus 4 ~~dA~~yl~----~VK~~F~~~p~~Y~~FL~im~~~k~~~~~~~~v~~rv~~Lf~~hp 57 (77)
T 2czy_A 4 VEDALTYLD----QVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHP 57 (77)
T ss_dssp HHHHHHHHH----HHHHHTTTCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHH----HHHHHHccChHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCH
Confidence 344556654 56666654322222 222222 245667788888888888775
No 8
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=72.74 E-value=11 Score=21.72 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=48.3
Q ss_pred hHHHHHHHhhcCCCCCCcCcHHHHHHHhcCCchhHHHHHHHHHHhHHHHHHhhCCCccchhhhHHHhhccCCCHHHHHHH
Q psy5127 3 AMDGLLAKSTLDRDVIKPQDVKDVLSVVASNPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTSHFSAPYDLHEV 82 (128)
Q Consensus 3 ~ll~~~L~~~l~~~~v~~qd~~~~~~~v~~~~~g~~~~~~fl~~n~~~i~~~~~~~~~~~~~~l~~~~~~~~t~~~~~~~ 82 (128)
++++.|+....+ +++++++.....-+..-..|.. +-+|- ..+..-|++ ....++.++ +.|-...++..|
T Consensus 16 e~lqdYM~~L~~--~L~~~ElqqFA~Llr~YR~G~~-I~~Fc----~kLl~LyG~---~Rk~LL~gm-RpFIp~~Di~~F 84 (98)
T 4fqn_A 16 ELLQDYMLTLRT--KLSSQEIQQFAALLHEYRNGAS-IHEFC----INLRQLYGD---SRKFLLLGL-RPFIPEKDSQHF 84 (98)
T ss_dssp HHHHHHHHHHTT--TSCHHHHHHHHHHHHHHHTTCC-HHHHH----HHHHHHHCG---GGGGGGGGG-GGGSCHHHHHHH
T ss_pred HHHHHHHHHHHh--hcChHHHHHHHHHHHHHHcCCC-HHHHH----HHHHHHhch---HHHHHHhhc-cCCCChhhHHHH
Confidence 577888875543 3777777665544422122322 22332 244555664 455666665 778889999999
Q ss_pred HHHHhcCCC
Q psy5127 83 KAFFKDMDV 91 (128)
Q Consensus 83 ~~f~~~~~~ 91 (128)
++|++....
T Consensus 85 esFle~igi 93 (98)
T 4fqn_A 85 ENFLETIGV 93 (98)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCc
Confidence 999998654
No 9
>3oao_A Uncharacterized protein from DUF2059 family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.72A {Pseudomonas aeruginosa} PDB: 2x3o_A
Probab=70.59 E-value=17 Score=22.71 Aligned_cols=89 Identities=15% Similarity=0.107 Sum_probs=47.0
Q ss_pred chhHHHHHHHHHHhHHHHHHhhCCCccchhhhHHHhhccCCCHHHHHHHHHHHhcCCCChh-HhHHHHHHHHHHHhHHHH
Q psy5127 34 PEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTSHFSAPYDLHEVKAFFKDMDVGSG-ARSLEQSLETIELNIHWV 112 (128)
Q Consensus 34 ~~g~~~~~~fl~~n~~~i~~~~~~~~~~~~~~l~~~~~~~~t~~~~~~~~~f~~~~~~~~~-~~~~~~~~e~i~~n~~w~ 112 (128)
|......|+=+.+.+..+..+.-+-......++..-+.+| |+++++.+.+|+++-..... ...=.-.-+....-..|.
T Consensus 41 p~~~~~~~~~~~~k~~~~~~k~~s~~~l~~~~~~iY~~~f-T~~El~~l~~FY~sp~Gkk~~~~~p~~~~~~~~~~q~~~ 119 (147)
T 3oao_A 41 PESKKAVLERYQAKANAELDRAIGWDKIKPELIKLYTTNF-TESELKDLNAFYQSPLGKKVLEKMPRLTAESAQLTQAKL 119 (147)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHC-CHHHHHHHHHHHCCHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4434344554555555444332211122334444445555 79999999999986322111 111122235555666788
Q ss_pred hhCHHHHHHHH
Q psy5127 113 RRNEELIFQWL 123 (128)
Q Consensus 113 ~~~~~~i~~wl 123 (128)
....+.+...+
T Consensus 120 ~~~~p~~~~~~ 130 (147)
T 3oao_A 120 QGAVEPVNKLM 130 (147)
T ss_dssp GGGHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777766554
No 10
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=57.46 E-value=10 Score=21.44 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=12.7
Q ss_pred CCHHHHHHHHHHHhcCC
Q psy5127 74 SAPYDLHEVKAFFKDMD 90 (128)
Q Consensus 74 ~t~~~~~~~~~f~~~~~ 90 (128)
.+.+-++++..+|.+|+
T Consensus 60 ~~~~V~~~V~~LF~~h~ 76 (89)
T 1g1e_B 60 TEQEVYAQVARLFKNQE 76 (89)
T ss_dssp CHHHHHHHHHHHTTTCH
T ss_pred cHHHHHHHHHHHHccCH
Confidence 34677888888888775
No 11
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=56.19 E-value=19 Score=20.12 Aligned_cols=53 Identities=11% Similarity=0.097 Sum_probs=27.9
Q ss_pred chhHHHHHHHHHHhHHHHHHhhCCCccchhhhHHHhh----c----------cCCCHHHHHHHHHHHhcCC
Q psy5127 34 PEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVT----S----------HFSAPYDLHEVKAFFKDMD 90 (128)
Q Consensus 34 ~~g~~~~~~fl~~n~~~i~~~~~~~~~~~~~~l~~~~----~----------~~~t~~~~~~~~~f~~~~~ 90 (128)
|+..+-+.+|+. .|+.+|...+.....++..+- + ..+-.+-++++..+|.+|+
T Consensus 4 ~~~~~~A~~yv~----kVK~rF~~~p~~Y~~FL~il~~yk~~~~d~~~~~~~~~s~~eV~~~V~~Lf~~hp 70 (85)
T 1e91_A 4 SVEFNNAISYVN----KIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQE 70 (85)
T ss_dssp CHHHHHHHHHHH----HHHHHTSSCHHHHHHHHHHHHHHHHTTCSSSCCCSSCCCHHHHHHHHHHHTSSCH
T ss_pred CccHHHHHHHHH----HHHHHHhcChHHHHHHHHHHHHHHHccccccccccccCcHHHHHHHHHHHHccCH
Confidence 455566666665 666777653322222222111 1 1223567777888887774
No 12
>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}
Probab=55.86 E-value=33 Score=21.12 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=23.7
Q ss_pred HHHHHHHhcCCCChhHhHHHHHHHHHHHhHHHHhhCH
Q psy5127 80 HEVKAFFKDMDVGSGARSLEQSLETIELNIHWVRRNE 116 (128)
Q Consensus 80 ~~~~~f~~~~~~~~~~~~~~~~~e~i~~n~~w~~~~~ 116 (128)
+.++..++....+.....+.+.+..++.+.+|++.-+
T Consensus 113 ~~Y~~al~~~lp~~~r~ll~~q~~~~~~~~d~~~~Lr 149 (153)
T 4etr_A 113 HRYQAALEKSLPAEIHQVIERQYQGVLRHHDRVRALR 149 (153)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555543233456677888888888888887543
No 13
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=55.07 E-value=9.6 Score=21.11 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=13.9
Q ss_pred ccCCCHHHHHHHHHHHhcCC
Q psy5127 71 SHFSAPYDLHEVKAFFKDMD 90 (128)
Q Consensus 71 ~~~~t~~~~~~~~~f~~~~~ 90 (128)
+...+.+-++++..+|..|+
T Consensus 44 ~~~~~~~v~~rV~~Lf~~hp 63 (80)
T 2cr7_A 44 QSIDTPGVIRRVSQLFHEHP 63 (80)
T ss_dssp TSSCHHHHHHHHHHHGGGCH
T ss_pred cCCCHHHHHHHHHHHHcCCH
Confidence 34566777777888877775
No 14
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=51.87 E-value=14 Score=21.69 Aligned_cols=15 Identities=20% Similarity=0.343 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhcCC
Q psy5127 76 PYDLHEVKAFFKDMD 90 (128)
Q Consensus 76 ~~~~~~~~~f~~~~~ 90 (128)
.+-++++..+|..|+
T Consensus 56 ~eV~~~V~~LF~~hp 70 (105)
T 2f05_A 56 EEVFTEVANLFRGQE 70 (105)
T ss_dssp HHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHccCH
Confidence 345556666665554
No 15
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=36.78 E-value=39 Score=19.49 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHhcCCCChhHhHHHHHHHHHHHhHHHHhhCHHHHHHHHhh
Q psy5127 73 FSAPYDLHEVKAFFKDMDVGSGARSLEQSLETIELNIHWVRRNEELIFQWLSS 125 (128)
Q Consensus 73 ~~t~~~~~~~~~f~~~~~~~~~~~~~~~~~e~i~~n~~w~~~~~~~i~~wl~~ 125 (128)
....+.+..+...+..++.-|-..+++.-+.....++.-.+.....+..||..
T Consensus 35 ~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e 87 (98)
T 2ke4_A 35 VDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAE 87 (98)
T ss_dssp HHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677777888776643334555666777777888777777777888753
No 16
>2khr_A Protein MBTH; siderophores, mycobactin, MTBH-like, 2-hydroxyphenyloxazolin tuberculosis, biosynthetic protein, structural genomics; NMR {Mycobacterium tuberculosis}
Probab=33.58 E-value=11 Score=20.63 Aligned_cols=21 Identities=10% Similarity=0.286 Sum_probs=18.0
Q ss_pred CCchhHHHHHHHHHHhHHHHH
Q psy5127 32 SNPEGNFLAWRHLKAHWKGLQ 52 (128)
Q Consensus 32 ~~~~g~~~~~~fl~~n~~~i~ 52 (128)
..+.+++.-.+|+.+||..+.
T Consensus 43 ~~~~sr~~CL~yIe~~WtDmR 63 (74)
T 2khr_A 43 HGEASRAACLDYVEKNWTDLR 63 (74)
T ss_dssp ECSCCHHHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHhhhcCCC
Confidence 467789999999999999874
No 17
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis}
Probab=33.05 E-value=27 Score=28.10 Aligned_cols=52 Identities=6% Similarity=0.092 Sum_probs=37.3
Q ss_pred HhHHHHHHHhhcCC--CCCCcCcHHHHHHHhcCCchhHH----HHHHHHHHhHHHHHH
Q psy5127 2 RAMDGLLAKSTLDR--DVIKPQDVKDVLSVVASNPEGNF----LAWRHLKAHWKGLQN 53 (128)
Q Consensus 2 ~~ll~~~L~~~l~~--~~v~~qd~~~~~~~v~~~~~g~~----~~~~fl~~n~~~i~~ 53 (128)
++++++++.++.++ +...|+++..++.+++.||.+.+ .=+.|+.+-.-.+.+
T Consensus 757 ~~~~~~v~~l~~~~~f~~~npn~~r~l~~~~~~n~~~fh~~~g~gy~~~~~~~~~l~~ 814 (867)
T 2gtq_A 757 SDTLQQVRTALQHPKFSLENPNKARSLIGSFSRNVPHFHAEDGSGYRFIADKVIEIDR 814 (867)
T ss_dssp TTHHHHHHHHTTSTTCCTTCHHHHHHHHHHHHTCHHHHTCTTSHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhCcCCCcCCchHHHHHHHHHhhCccccCCCCCcHHHHHHHHHHHhcC
Confidence 46789999999988 55678888888888877887654 235666655545543
No 18
>2xqo_A Cellulosome enzyme, dockerin type I; hydrolase; HET: MSE CTR; 1.40A {Clostridium thermocellum}
Probab=30.95 E-value=41 Score=21.94 Aligned_cols=38 Identities=13% Similarity=0.300 Sum_probs=25.9
Q ss_pred CcCcHHHHHHHhcCCchhHHHHHHHHHHhHHHHHHhhCC
Q psy5127 19 KPQDVKDVLSVVASNPEGNFLAWRHLKAHWKGLQNLFGN 57 (128)
Q Consensus 19 ~~qd~~~~~~~v~~~~~g~~~~~~fl~~n~~~i~~~~~~ 57 (128)
..+++...-..+... +-..++.+.+.+||+-|..+++.
T Consensus 42 Sk~e~ia~as~l~vs-eVKa~ikk~vDEHwDli~~~~Gf 79 (243)
T 2xqo_A 42 SKHELIARASSLKVS-EVKAIIKKQVDEHWDVIRDVCGF 79 (243)
T ss_dssp CHHHHHHHHHHCCHH-HHHHHHHHHHHHTHHHHHHHHCC
T ss_pred cHHHHHHHhccccHH-HHHHHHHHHHHHHHHHHHHHhCC
Confidence 344444444444333 33667889999999999999875
No 19
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=30.57 E-value=1.2e+02 Score=21.67 Aligned_cols=100 Identities=13% Similarity=0.183 Sum_probs=54.0
Q ss_pred cCcHHHHHHHhc-CCchhHHHHHHHHHHhHHHHHHhhCC---Cc--cchhhhHHHhhccCCCHHHH-------HHHHHHH
Q psy5127 20 PQDVKDVLSVVA-SNPEGNFLAWRHLKAHWKGLQNLFGN---GT--FSMGALIGVVTSHFSAPYDL-------HEVKAFF 86 (128)
Q Consensus 20 ~qd~~~~~~~v~-~~~~g~~~~~~fl~~n~~~i~~~~~~---~~--~~~~~~l~~~~~~~~t~~~~-------~~~~~f~ 86 (128)
..|+..+|..+. ..+.++..+.+|+.+|-+.+..-+.+ .. ..-+.++..++.+ +.+ +.|..||
T Consensus 95 RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~----e~la~~iL~~~~f~~fF 170 (341)
T 1upk_A 95 KKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRH----EPLAKIILWSEQFYDFF 170 (341)
T ss_dssp HHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTS----HHHHHHHHHSGGGGHHH
T ss_pred hccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHh----HHHHHHHhccHHHHHHH
Confidence 457888888775 56667788899999886655443332 11 1234555555431 111 2345677
Q ss_pred hcCCCChhHhHHHHHHHHHHHhHHHHhhCHHHHHHHHhhhc
Q psy5127 87 KDMDVGSGARSLEQSLETIELNIHWVRRNEELIFQWLSSYL 127 (128)
Q Consensus 87 ~~~~~~~~~~~~~~~~e~i~~n~~w~~~~~~~i~~wl~~~~ 127 (128)
+-...+.++-+ ..|..+.+ ....+|...+.+||.+|.
T Consensus 171 ~yv~~~~Fdia-sDAf~Tfk---elLt~Hk~lvaefL~~ny 207 (341)
T 1upk_A 171 RYVEMSTFDIA-SDAFATFK---DLLTRHKLLSAEFLEQHY 207 (341)
T ss_dssp HHTTCSSHHHH-HHHHHHHH---HHHHSSHHHHHHHHHHTH
T ss_pred HHhcCCCchHH-HHHHHHHH---HHHhccHHHHHHHHHHhH
Confidence 65444433211 12233332 234567777777776653
No 20
>1ioj_A APOC-I; apolipoprotein, amphipathic helix, lipid association, LCAT activation; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=30.47 E-value=47 Score=17.16 Aligned_cols=20 Identities=0% Similarity=-0.016 Sum_probs=16.9
Q ss_pred HHHHHHHHHhHHHHHHhhCC
Q psy5127 38 FLAWRHLKAHWKGLQNLFGN 57 (128)
Q Consensus 38 ~~~~~fl~~n~~~i~~~~~~ 57 (128)
--.++|+.+.++.+..+++.
T Consensus 36 tKtrnWfsEtfekvK~K~~~ 55 (57)
T 1ioj_A 36 AKMREWFSETFQKVKEKLKI 55 (57)
T ss_dssp SHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 34689999999999999864
No 21
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}
Probab=29.77 E-value=9.8 Score=25.08 Aligned_cols=40 Identities=15% Similarity=0.356 Sum_probs=29.9
Q ss_pred HhHHHHHHhhCCCccchhhhHHHhhccCCCHHHHHHHHHHHhc
Q psy5127 46 AHWKGLQNLFGNGTFSMGALIGVVTSHFSAPYDLHEVKAFFKD 88 (128)
Q Consensus 46 ~n~~~i~~~~~~~~~~~~~~l~~~~~~~~t~~~~~~~~~f~~~ 88 (128)
-||+.+.+++.... ..+-+.+..|.+|.+.+..++.|+..
T Consensus 3 ~~~~~~~~~~~~~~---~~~~~~l~~H~STReRLp~ld~fY~~ 42 (200)
T 3fzg_A 3 PNWDKLLKKYNQGQ---LSIEDLLKIHSSTNERVATLNDFYTY 42 (200)
T ss_dssp CCHHHHHHHHHTTS---CCHHHHHHHSHHHHTTGGGHHHHHHH
T ss_pred CcHHHHHHHHHHhh---hhHHHHHhhCCCHHHHhHhHHHHHHH
Confidence 38999988887533 33444677888999988889998765
No 22
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=27.67 E-value=95 Score=18.08 Aligned_cols=84 Identities=17% Similarity=0.148 Sum_probs=54.8
Q ss_pred CHhHHHHHHHhhcC--CCCCCcCcHHHHHHHhcC--CchhHHHHHHHHHHhHHHHHHhhCCCccchhhhHHHhhccCCCH
Q psy5127 1 MRAMDGLLAKSTLD--RDVIKPQDVKDVLSVVAS--NPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTSHFSAP 76 (128)
Q Consensus 1 ~~~ll~~~L~~~l~--~~~v~~qd~~~~~~~v~~--~~~g~~~~~~fl~~n~~~i~~~~~~~~~~~~~~l~~~~~~~~t~ 76 (128)
|+..+.++++++-- ++.|+.+|+.-++.-+.+ +..-...+-..|...= ..+.-.+...|+.++...-++
T Consensus 4 ~~~~l~siv~WLRaGYP~GVP~~Dy~PLlALL~r~Ltdeev~~Va~~L~~~~-------~i~~~dI~~~I~~vt~~~Ps~ 76 (103)
T 2kvc_A 4 MNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLG-------DFDQIDIGVVITHFTDELPSP 76 (103)
T ss_dssp HHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHT-------SSCSSCHHHHHHSCCSSCSCH
T ss_pred ccHHHHHHHHHHHccCCCCCCCcchHHHHHHHhccCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHhccCCCH
Confidence 45567788887643 455999999888876643 2222222222222111 123346888899999999999
Q ss_pred HHHHHHHHHHhcCCC
Q psy5127 77 YDLHEVKAFFKDMDV 91 (128)
Q Consensus 77 ~~~~~~~~f~~~~~~ 91 (128)
++++++.+-+....-
T Consensus 77 eDI~RV~arLaa~GW 91 (103)
T 2kvc_A 77 EDVERVRARLAAQGW 91 (103)
T ss_dssp HHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999988876543
No 23
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.52 E-value=63 Score=16.65 Aligned_cols=40 Identities=10% Similarity=-0.001 Sum_probs=22.4
Q ss_pred hHHHHHHHhhcCCCCCCcCcHHHHHHHhcCCchhHHHHHHHHHHhHHH
Q psy5127 3 AMDGLLAKSTLDRDVIKPQDVKDVLSVVASNPEGNFLAWRHLKAHWKG 50 (128)
Q Consensus 3 ~ll~~~L~~~l~~~~v~~qd~~~~~~~v~~~~~g~~~~~~fl~~n~~~ 50 (128)
+.+.+++++=+ ........+... .+ ..+.+.+||.+|-+.
T Consensus 11 ~~v~~L~~MGF-----~~~~a~~AL~~t-~~--nve~A~e~L~~~~~d 50 (63)
T 2dak_A 11 DCVTTIVSMGF-----SRDQALKALRAT-NN--SLERAVDWIFSHIDD 50 (63)
T ss_dssp HHHHHHHHHTC-----CHHHHHHHHHHT-TS--CSHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCC-----CHHHHHHHHHHc-CC--CHHHHHHHHHhCCCC
Confidence 45666666533 222333333332 22 478889999988764
No 24
>1q87_A 39 kDa initiator binding protein; INR, core promoter, DNA binding protein; 2.32A {Trichomonas vaginalis} SCOP: e.47.1.1 PDB: 1q88_A 1q89_A
Probab=27.20 E-value=55 Score=21.69 Aligned_cols=44 Identities=18% Similarity=0.184 Sum_probs=31.3
Q ss_pred CchhHHHHHHHHHHhHHHHHHhhCCCccchhhhHHHhhccCCCHH
Q psy5127 33 NPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTSHFSAPY 77 (128)
Q Consensus 33 ~~~g~~~~~~fl~~n~~~i~~~~~~~~~~~~~~l~~~~~~~~t~~ 77 (128)
.|.......+.+.+-|+.|....+. ...+..+|..++.+|+.++
T Consensus 28 ~~~~~~~Fk~~vi~iW~eiv~~~~i-~~~~~~fI~~aa~~F~~~~ 71 (221)
T 1q87_A 28 TPNEQETFRAKVDEIWFRLTQKTDG-TVMRDFLIEKAAEYFKQPE 71 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSSSS-EEEHHHHHHHHHHHHSCTT
T ss_pred CHHHHHHHHHHHHHHHHHHhccccc-cccHHHHHHHHHHHHhccc
Confidence 4556667777888889999887664 5667777777777776643
No 25
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.03 E-value=48 Score=15.91 Aligned_cols=12 Identities=25% Similarity=-0.086 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHh
Q psy5127 36 GNFLAWRHLKAH 47 (128)
Q Consensus 36 g~~~~~~fl~~n 47 (128)
+.+.+.+||.+|
T Consensus 35 n~e~A~~~L~~h 46 (47)
T 2ekk_A 35 TMEQATEYLLTH 46 (47)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHcC
Confidence 577788888765
No 26
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.70 E-value=65 Score=17.83 Aligned_cols=15 Identities=20% Similarity=-0.057 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHhHH
Q psy5127 35 EGNFLAWRHLKAHWK 49 (128)
Q Consensus 35 ~g~~~~~~fl~~n~~ 49 (128)
.+.+.+.+||.+|-+
T Consensus 55 ~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 55 MSVPQAMEWLIEHAE 69 (83)
T ss_dssp SCHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHCCC
Confidence 467788899988754
No 27
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.59 E-value=50 Score=18.44 Aligned_cols=41 Identities=12% Similarity=-0.056 Sum_probs=22.8
Q ss_pred hHHHHHHHhhcCCCCCCcCcHHHHHHHhcCCchhHHHHHHHHHHhHHHH
Q psy5127 3 AMDGLLAKSTLDRDVIKPQDVKDVLSVVASNPEGNFLAWRHLKAHWKGL 51 (128)
Q Consensus 3 ~ll~~~L~~~l~~~~v~~qd~~~~~~~v~~~~~g~~~~~~fl~~n~~~i 51 (128)
+.+++++++=+. .. .+..++..+..+.+.+.+||.+|-...
T Consensus 23 ~~I~qL~~MGF~-----~~---~a~~AL~~~n~n~e~A~ewL~~h~~D~ 63 (85)
T 2dkl_A 23 RLIKQLTDMGFP-----RE---PAEEALKSNNMNLDQAMSALLEKKVDV 63 (85)
T ss_dssp HHHHHHHHHTCC-----HH---HHHHHHHHTTSCHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHcCCC-----HH---HHHHHHHHcCCCHHHHHHHHHHCcCCc
Confidence 455666665332 22 233333333346788889998876543
No 28
>3hpw_C Protein CCDA; alpha+beta, SH3 domain, intrinsically disordered, toxin/toxin repressor complex; 1.45A {Escherichia coli} PDB: 3g7z_C 3tcj_T
Probab=24.36 E-value=41 Score=15.55 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=11.2
Q ss_pred hHHHHhhCHHHHHHH
Q psy5127 108 NIHWVRRNEELIFQW 122 (128)
Q Consensus 108 n~~w~~~~~~~i~~w 122 (128)
...|.+.|.+.|.++
T Consensus 5 ~~~W~~EN~~ai~~~ 19 (36)
T 3hpw_C 5 AERWKAENQEGMAEV 19 (36)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356999998887654
No 29
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.33 E-value=90 Score=16.64 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=14.1
Q ss_pred CCHHHHHHHHHHHhcC
Q psy5127 74 SAPYDLHEVKAFFKDM 89 (128)
Q Consensus 74 ~t~~~~~~~~~f~~~~ 89 (128)
.|.+++..|+.+|..+
T Consensus 15 ft~~Q~~~Le~~F~~~ 30 (80)
T 2da4_A 15 FSDRDLATLKKYWDNG 30 (80)
T ss_dssp CCHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHhC
Confidence 4789999999999877
No 30
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=24.05 E-value=1.2e+02 Score=17.95 Aligned_cols=84 Identities=13% Similarity=0.096 Sum_probs=55.7
Q ss_pred CHhHHHHHHHhhcC--CCCCCcCcHHHHHHHhcC--CchhHHHHHHHHHHhHHHHHHhhCCCccchhhhHHHhhccCCCH
Q psy5127 1 MRAMDGLLAKSTLD--RDVIKPQDVKDVLSVVAS--NPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTSHFSAP 76 (128)
Q Consensus 1 ~~~ll~~~L~~~l~--~~~v~~qd~~~~~~~v~~--~~~g~~~~~~fl~~n~~~i~~~~~~~~~~~~~~l~~~~~~~~t~ 76 (128)
|+..+.++++++-- ++.|+.+|+.-++.-+.+ +..-...+-..|.+. -..+.-.+...|+.++...-++
T Consensus 6 ~~~~l~siv~WLRAGYP~GVP~~Dy~PLLALL~r~Ltdeev~~Va~~L~~~-------~~i~~~dI~~~I~~vt~~~Ps~ 78 (112)
T 2lky_A 6 VNAFLAKIAAWLNAGYPEGVPGPDRVPLLALLTRRLTNDEIKAIAEDLEKR-------AHFDHIDIGVLITQMTDEMPRE 78 (112)
T ss_dssp SCHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH-------CCCSCCCSHHHHHHHTTCCCCH
T ss_pred ccHHHHHHHHHHHccCCCCCCCcchHHHHHHHcccCCHHHHHHHHHHHHHc-------CCCCHHHHHHHHHHHhccCCCH
Confidence 45677888888643 455999999888876643 222223333333322 1122346788899999999999
Q ss_pred HHHHHHHHHHhcCCC
Q psy5127 77 YDLHEVKAFFKDMDV 91 (128)
Q Consensus 77 ~~~~~~~~f~~~~~~ 91 (128)
++++++.+-+.....
T Consensus 79 eDI~RV~arLaa~GW 93 (112)
T 2lky_A 79 EDIERVRRHLALQGW 93 (112)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999988876543
No 31
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=23.62 E-value=92 Score=16.50 Aligned_cols=55 Identities=11% Similarity=0.292 Sum_probs=28.5
Q ss_pred hccCCCHHHHHHHHHHHhcCCCC--hhHhHHHHHHHHHHHhHHHHhhCHHHHHHHHhhhc
Q psy5127 70 TSHFSAPYDLHEVKAFFKDMDVG--SGARSLEQSLETIELNIHWVRRNEELIFQWLSSYL 127 (128)
Q Consensus 70 ~~~~~t~~~~~~~~~f~~~~~~~--~~~~~~~~~~e~i~~n~~w~~~~~~~i~~wl~~~~ 127 (128)
.++.-|+.+.+.+..+++...-+ -....++.++..-+.+.+.+ ...+.+|-++++
T Consensus 14 ~gr~ls~~e~~~i~~w~~~~~~~~elI~~A~~~a~~~~~~s~~Yi---~~Il~~W~~~gi 70 (78)
T 2zc2_A 14 LGRMLSPFELEDLQKTVSDDKTDPDLVRSALREAVFNGKTNWNYI---QAILRNWRHEGI 70 (78)
T ss_dssp HTSCCCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTCCCHHHH---HHHHHHHHHTTC
T ss_pred hCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHH---HHHHHHHHHcCC
Confidence 34556788889999998864322 12233333332222222222 334577776655
No 32
>3kdw_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Bacteroides vulgatus atcc 8482} PDB: 3g6i_A*
Probab=23.58 E-value=75 Score=21.04 Aligned_cols=22 Identities=14% Similarity=0.003 Sum_probs=17.2
Q ss_pred HHHhHHHHhhCHHHHHHHHhhh
Q psy5127 105 IELNIHWVRRNEELIFQWLSSY 126 (128)
Q Consensus 105 i~~n~~w~~~~~~~i~~wl~~~ 126 (128)
++.--.|...+++.|.+||.++
T Consensus 178 sk~kha~F~kYKgrinnYL~~~ 199 (221)
T 3kdw_A 178 SNKKHAAFGKYKGRINNYLSKR 199 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHc
Confidence 4455678899999999999764
No 33
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.38 E-value=65 Score=16.75 Aligned_cols=13 Identities=15% Similarity=-0.227 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHhH
Q psy5127 36 GNFLAWRHLKAHW 48 (128)
Q Consensus 36 g~~~~~~fl~~n~ 48 (128)
..+.+.+||.+|-
T Consensus 36 nve~A~e~L~~~~ 48 (63)
T 1wji_A 36 NLEAALNVLLTSN 48 (63)
T ss_dssp CHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHCC
Confidence 4677888988773
No 34
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=22.38 E-value=1.1e+02 Score=17.00 Aligned_cols=59 Identities=7% Similarity=0.019 Sum_probs=35.2
Q ss_pred HhHHHHHHhhCCCccchhhhHHHhhccCCCHHHHHHHHHHHhcCCCChhHhHHHHHHHHH
Q psy5127 46 AHWKGLQNLFGNGTFSMGALIGVVTSHFSAPYDLHEVKAFFKDMDVGSGARSLEQSLETI 105 (128)
Q Consensus 46 ~n~~~i~~~~~~~~~~~~~~l~~~~~~~~t~~~~~~~~~f~~~~~~~~~~~~~~~~~e~i 105 (128)
..|..+..++|-+...+..+-..- .+=..+..++.|+.+...+...+....+-+++..+
T Consensus 13 ~~wK~~~R~LGlse~~Id~I~~~~-~~d~~Eq~~qmL~~W~~~~g~~a~~~~Li~~Lr~~ 71 (86)
T 3oq9_A 13 QEAKKFARENNIKEGKIDEIMHDS-IQDTAEQKVQLLLCWYQSHGKSDAYQDLIKGLKKA 71 (86)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHTC-TTCCTTHHHHHHHHHHHHSCSSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHhHHHHHHHhC-CCChHHHHHHHHHHHHHHhCcchHHHHHHHHHHHc
Confidence 457777777765444455543322 22234778888888888876555555555555443
No 35
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=21.78 E-value=1e+02 Score=16.30 Aligned_cols=20 Identities=10% Similarity=-0.114 Sum_probs=15.3
Q ss_pred CCCHHHHHHHHHHHhcCCCC
Q psy5127 73 FSAPYDLHEVKAFFKDMDVG 92 (128)
Q Consensus 73 ~~t~~~~~~~~~f~~~~~~~ 92 (128)
..|.++++.|+..|..++-+
T Consensus 23 ~ft~~Ql~~Le~~f~~~~yp 42 (80)
T 2da3_A 23 TITPEQLEILYQKYLLDSNP 42 (80)
T ss_dssp SCCTTTHHHHHHHHHHCSSC
T ss_pred CCCHHHHHHHHHHHHhcCCC
Confidence 34678899999999876644
No 36
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=20.56 E-value=92 Score=16.67 Aligned_cols=13 Identities=8% Similarity=-0.376 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHhH
Q psy5127 36 GNFLAWRHLKAHW 48 (128)
Q Consensus 36 g~~~~~~fl~~n~ 48 (128)
+.+.+.+||.+|-
T Consensus 56 nve~Ave~L~~~~ 68 (73)
T 1wiv_A 56 DIEKATDWVFNNS 68 (73)
T ss_dssp CHHHHHHHHHHSC
T ss_pred CHHHHHHHHHhCC
Confidence 5667778877653
Done!