RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5127
(128 letters)
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A
{Homo sapiens}
Length = 419
Score = 126 bits (318), Expect = 5e-36
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 12 TLDRDVIKPQDVKDVLSVVASNPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTS 71
+ D IK Q+ +L+++ NP G LAW+ L+ +W L F G+ S+ ++ T+
Sbjct: 293 SFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTN 352
Query: 72 HFSAPYDLHEVKAFFKDM-DVGSGARSLEQSLETIELNIHWVRRNEELIFQWLSSY 126
FS L EVK FF + + GS R ++Q++ETIE NI W+ +N + I WL S
Sbjct: 353 QFSTRTRLEEVKGFFSSLKENGSQLRCVQQTIETIEENIGWMDKNFDKIRVWLQSE 408
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 126 bits (318), Expect = 4e-35
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 12 TLDRDVIKPQDVKDVLSVVASNPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTS 71
+ D IK Q+ +L+++ NP G LAW+ L+ +W L F G+ S+ ++ T+
Sbjct: 776 SFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTN 835
Query: 72 HFSAPYDLHEVKAFFKDM-DVGSGARSLEQSLETIELNIHWVRRNEELIFQWLSSY 126
FS L EVK FF + + GS R ++Q++ETIE NI W+ +N + I WL S
Sbjct: 836 QFSTRTRLEEVKGFFSSLKENGSQLRCVQQTIETIEENIGWMDKNFDKIRVWLQSE 891
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 122 bits (308), Expect = 9e-34
Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 12 TLDRDVIKPQDVKDVLSVVASNPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTS 71
++ VIK Q++ +L +A P+G LAW ++ +W L F G++ + +I T+
Sbjct: 844 GMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTTA 903
Query: 72 HFSAPYDLHEVKAFFKDMDV-GSGARSLEQSLETIELNIHWVRRNEELIFQWLSSYLQ 128
HFS+ L EVK FF+ ++ GS + LETI NI W+ +N + WL +
Sbjct: 904 HFSSKDKLQEVKLFFESLEAQGSHLDIFQTVLETITKNIKWLEKNLPTLRTWLMVNTR 961
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 106 bits (267), Expect = 4e-28
Identities = 14/106 (13%), Positives = 37/106 (34%), Gaps = 3/106 (2%)
Query: 16 DVIKPQDVKDVLSVVASNPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTSHFSA 75
IK QD+ S G + +L + + F G + + ++
Sbjct: 678 TEIKKQDMISFFSSALETLPGREFIFANLDRIIRLVIRYFT-GNRTASRTVEMMIPVIGL 736
Query: 76 PYDLHEVKAFFKDMDVGSGARSLEQSLETIELNIHWVRRNEELIFQ 121
+ + + +++ + + L + +E + +N V R + +
Sbjct: 737 DHP--DAEDIVRNIGSKNISMGLAKGIEMLAVNRKLVERIRQTAVK 780
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.50
Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 20/69 (28%)
Query: 8 LAKSTLDRDVIKPQ--DVKDVLSVVASNPEGNFLAWRHLKAHWKGLQNLFGNGTFSMGAL 65
L ++TLD + + Q ++ + L ++ P+ ++L + S L
Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL----------------SIPISCP-L 240
Query: 66 IGVV-TSHF 73
IGV+ +H+
Sbjct: 241 IGVIQLAHY 249
>3gkr_A FEMX; peptidoglycan, hexapeptide, transferase; HET: UDP UM0 UM1
UM2; 1.60A {Lactobacillus viridescens} PDB: 1ne9_A
1p4n_A* 1xix_A 1xf8_A 1xe4_A
Length = 336
Score = 28.2 bits (62), Expect = 0.75
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 15 RDVIKPQDVKDVLSVVASNPEGNFL---AWRHLKAHWK 49
++ PQ V+ + +P G W +K +W+
Sbjct: 4 LNLNDPQAVERYEEFMRQSPYGQVTQDLGWAKVKNNWE 41
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer,
oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Length = 689
Score = 28.0 bits (62), Expect = 0.85
Identities = 12/61 (19%), Positives = 17/61 (27%), Gaps = 8/61 (13%)
Query: 34 PEGNFLAWRHLKAHWKGLQNLFGNGTFSMGALIGVVTSHF-SAPYDLHEVKAFFKDMDVG 92
GN W NLF + ++ A G H+ + P D D
Sbjct: 252 GVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAW-------DYTAT 304
Query: 93 S 93
Sbjct: 305 Q 305
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure
initiative, NE structural genomix research consortium,
nysgxrc; 2.35A {Pichia guilliermondii}
Length = 132
Score = 27.0 bits (59), Expect = 1.4
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 41 WRHLK--AHWKGLQNLFGNGTFSMGALIGVVTSHFSAPYDLHEVKAFFKDMDVGSGARS 97
W + + L NG G L+GV+ A L + K + D+GSG +
Sbjct: 64 WTKITYDNPASAVDALLENGAVFNGVLLGVIPYTKDAVERLQKRKLTSSE-DIGSGITT 121
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function;
2.00A {Candida albicans} PDB: 2x7p_A
Length = 321
Score = 25.8 bits (56), Expect = 5.5
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 66 IGVVTSHFSAPYDLHEVKAFFKD-------MDVGSGARSLEQSLET 104
+ + HFS P + + ++K + V G+ L L +
Sbjct: 19 VAYIPEHFSTPLFFAQQQGYYKAHDLSIEFVKVPEGSGRLINLLNS 64
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S
genomics consortium, SGC, oxidoreductase; HET: NAD UPG;
2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A*
3tdk_A* 3ptz_A* 3prj_A* 3tf5_A
Length = 467
Score = 25.2 bits (56), Expect = 8.0
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 9/38 (23%)
Query: 10 KSTL-----D--RDVIKPQDVKDVLSVVASNPEGNFLA 40
KST+ + R + ++ V SNPE FLA
Sbjct: 130 KSTVPVRAAESIRRIFDANTKPNLNLQVLSNPE--FLA 165
>3pn9_A Proline dipeptidase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG,
hydrolase; 2.00A {Streptococcus pneumoniae}
Length = 138
Score = 24.6 bits (54), Expect = 8.2
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 14/70 (20%)
Query: 1 MRAMDGLLAKSTLDRDVIKPQDVKDVLSVVAS-----NP-----EGNFLAWRHLKAHWKG 50
+ A++ A ST+ V+ D ++ + + E + L + G
Sbjct: 59 VPALEVERASSTVSFPVVGYVDSENPWQKIKHALPQLDFKRVAVEFDNLIL----TKYHG 114
Query: 51 LQNLFGNGTF 60
L+ +F F
Sbjct: 115 LKTVFETAEF 124
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf;
substrate channeling, amidotransferase, TIM-barrel AS A
SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae}
SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A
1ox4_A
Length = 555
Score = 25.1 bits (55), Expect = 8.3
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 9/40 (22%)
Query: 90 DVGSG-ARSLEQSLETIELNIHWVRRNEE--------LIF 120
DV SG +SL ++E + + V+ ++ LI
Sbjct: 11 DVESGNLQSLTNAIEHLGYEVQLVKSPKDFNISGTSRLIL 50
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.411
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,989,987
Number of extensions: 108370
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 22
Length of query: 128
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 45
Effective length of database: 4,384,350
Effective search space: 197295750
Effective search space used: 197295750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)