RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5127
         (128 letters)



>d2p41a1 c.66.1.25 (A:8-264) An RNA cap
           (nucleoside-2'-O-)-methyltransferase domain of RNA
           polymerase NS5 {Dengue virus 2 [TaxId: 11060]}
          Length = 257

 Score = 25.3 bits (55), Expect = 2.4
 Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 88  DMDVGSGARSLEQ--SLETIELNIHWVRRNEELIFQWLSSY 126
           D+   S   ++E   +L  + L  +W+  N +   + L+ Y
Sbjct: 139 DIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPY 179


>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
          Length = 443

 Score = 24.3 bits (52), Expect = 6.1
 Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 13/44 (29%)

Query: 10 KSTLDRDVIKPQDVKDVLSVVASNPEGNFLAWRHLKAHWKGLQN 53
           S LD+ +I   D K  +++   N              W+ +Q 
Sbjct: 9  VSELDQHIIGQADAKRAVAIALRN-------------RWRRMQL 39


>d1uhra_ a.42.1.1 (A:) SWI/SNF related regulator of chromatin
          (BRG1-associated factor 60a) {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 93

 Score = 23.2 bits (50), Expect = 7.8
 Identities = 4/26 (15%), Positives = 9/26 (34%)

Query: 51 LQNLFGNGTFSMGALIGVVTSHFSAP 76
          LQ +F +       +   + +    P
Sbjct: 60 LQQIFESQRMKFSEIPQRLHALLMPP 85


>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
          Length = 309

 Score = 23.6 bits (50), Expect = 9.8
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 10 KSTLDRDVIKPQDVKDVLSVVASNP 34
           S LD+ +I   D K  +++   N 
Sbjct: 9  VSELDQHIIGQADAKRAVAIALRNR 33


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 483,191
Number of extensions: 20123
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 9
Length of query: 128
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 53
Effective length of database: 1,377,846
Effective search space: 73025838
Effective search space used: 73025838
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.4 bits)