BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy513
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O55|A Chain A, Crystal Structure Of Human Fad-Linked Augmenter Of Liver
Regeneration (Alr)
Length = 125
Score = 135 bits (341), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 76/111 (68%)
Query: 19 SNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQ 78
+CP D+++LG+H+W LHT+AAYYPD P+ +QQ+DM+ F L SKFYPCE CA DL ++
Sbjct: 13 EDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPCEECAEDLRKR 72
Query: 79 LKVRPPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
L P T HN VN KLGKP FDC+KV+ERWRDGW DGS
Sbjct: 73 LARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGS 123
>pdb|3MBG|A Chain A, Crystal Structure Of Human Augmenter Of Liver Regeneration
(Alr)
pdb|3MBG|B Chain B, Crystal Structure Of Human Augmenter Of Liver Regeneration
(Alr)
pdb|3MBG|C Chain C, Crystal Structure Of Human Augmenter Of Liver Regeneration
(Alr)
Length = 139
Score = 135 bits (341), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 76/111 (68%)
Query: 19 SNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQ 78
+CP D+++LG+H+W LHT+AAYYPD P+ +QQ+DM+ F L SKFYPCE CA DL ++
Sbjct: 27 EDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPCEECAEDLRKR 86
Query: 79 LKVRPPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
L P T HN VN KLGKP FDC+KV+ERWRDGW DGS
Sbjct: 87 LARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGS 137
>pdb|3R7C|A Chain A, The Structure Of A Hexahestidine-Tagged Form Of Augmenter
Of Liver Regeneration Reveals A Novel Cd(2)cl(4)o(6)
Cluster That Aids In Crystal Packing
pdb|3R7C|B Chain B, The Structure Of A Hexahestidine-Tagged Form Of Augmenter
Of Liver Regeneration Reveals A Novel Cd(2)cl(4)o(6)
Cluster That Aids In Crystal Packing
pdb|3R7C|C Chain C, The Structure Of A Hexahestidine-Tagged Form Of Augmenter
Of Liver Regeneration Reveals A Novel Cd(2)cl(4)o(6)
Cluster That Aids In Crystal Packing
pdb|3R7C|D Chain D, The Structure Of A Hexahestidine-Tagged Form Of Augmenter
Of Liver Regeneration Reveals A Novel Cd(2)cl(4)o(6)
Cluster That Aids In Crystal Packing
Length = 139
Score = 135 bits (340), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 77/110 (70%)
Query: 20 NCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQL 79
+CP D+++LG++TW FLHT+AAYYPD P+ +QQ+DM+ F + SKFYPCE CA D+ +++
Sbjct: 28 DCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKRI 87
Query: 80 KVRPPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
P T HN VN KLGKP FDC++V+ERWRDGW DGS
Sbjct: 88 DRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGS 137
>pdb|1OQC|A Chain A, The Crystal Structure Of Augmenter Of Liver Regeneration:
A Mammalian Fad Dependent Sulfhydryl Oxidase
pdb|1OQC|B Chain B, The Crystal Structure Of Augmenter Of Liver Regeneration:
A Mammalian Fad Dependent Sulfhydryl Oxidase
pdb|1OQC|C Chain C, The Crystal Structure Of Augmenter Of Liver Regeneration:
A Mammalian Fad Dependent Sulfhydryl Oxidase
pdb|1OQC|D Chain D, The Crystal Structure Of Augmenter Of Liver Regeneration:
A Mammalian Fad Dependent Sulfhydryl Oxidase
Length = 125
Score = 135 bits (340), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 77/111 (69%)
Query: 19 SNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQ 78
+CP D+++LG++TW FLHT+AAYYPD P+ +QQ+DM+ F + SKFYPCE CA D+ ++
Sbjct: 13 EDCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKR 72
Query: 79 LKVRPPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
+ P T HN VN KLGKP FDC++V+ERWRDGW DGS
Sbjct: 73 IDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGS 123
>pdb|3TK0|A Chain A, Mutation Of Sfalr
Length = 126
Score = 132 bits (332), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 60/111 (54%), Positives = 75/111 (67%)
Query: 19 SNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQ 78
+CP D+++LG+H+W LHT+AAYYPD P+ +QQ+DM+ F L SKFYP E CA DL ++
Sbjct: 14 EDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPSEECAEDLRKR 73
Query: 79 LKVRPPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
L P T HN VN KLGKP FDC+KV+ERWRDGW DGS
Sbjct: 74 LARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGS 124
>pdb|3U2L|A Chain A, Crystal Structure Of Human Alr Mutant C142s
Length = 115
Score = 131 bits (330), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 60/111 (54%), Positives = 75/111 (67%)
Query: 19 SNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQ 78
+CP D+++LG+H+W LHT+AAYYPD P+ +QQ+DM+ F L SKFYP E CA DL ++
Sbjct: 3 EDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPSEECAEDLRKR 62
Query: 79 LKVRPPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
L P T HN VN KLGKP FDC+KV+ERWRDGW DGS
Sbjct: 63 LARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGS 113
>pdb|3U2M|A Chain A, Crystal Structure Of Human Alr Mutant C142145S
Length = 115
Score = 128 bits (321), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 74/111 (66%)
Query: 19 SNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQ 78
+CP D+++LG+H+W LHT+AAYYPD P+ +QQ+DM+ F L SKFYP E A DL ++
Sbjct: 3 EDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPSEESAEDLRKR 62
Query: 79 LKVRPPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
L P T HN VN KLGKP FDC+KV+ERWRDGW DGS
Sbjct: 63 LARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGS 113
>pdb|3U5S|A Chain A, Selenium Substituted Human Augmenter Of Liver Regeneration
Length = 126
Score = 120 bits (300), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 72/111 (64%)
Query: 19 SNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQ 78
+ P D+++LG+H+W LHT+AAYYPD P+ +QQ+D + F L SKFYP E A DL ++
Sbjct: 14 EDXPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDXAQFIHLFSKFYPXEEXAEDLRKR 73
Query: 79 LKVRPPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
L P T HN VN KLGKP FD +KV+ERWRDGW DGS
Sbjct: 74 LARNHPDTRTRAAFTQWLXHLHNEVNRKLGKPDFDXSKVDERWRDGWKDGS 124
>pdb|2HJ3|A Chain A, Structure Of The Arabidopsis Thaliana Erv1 Thiol Oxidase
pdb|2HJ3|B Chain B, Structure Of The Arabidopsis Thaliana Erv1 Thiol Oxidase
Length = 125
Score = 92.8 bits (229), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 56/100 (56%)
Query: 22 PLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKV 81
P+ K+ LG+ TW FLHT+AA YP+KP+ Q+KD+ T+LS+ YPC CA E L+
Sbjct: 7 PVTKEDLGRATWTFLHTLAAQYPEKPTRQQKKDVKELMTILSRMYPCRECADHFKEILRS 66
Query: 82 RPPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERW 121
P HN VN LGK +F C +V+ RW
Sbjct: 67 NPAQAGSQEEFSQWLCHVHNTVNRSLGKLVFPCERVDARW 106
>pdb|4E0H|A Chain A, Crystal Structure Of Fad Binding Domain Of Erv1 From
Saccharomyces Cerevisiae
Length = 106
Score = 92.4 bits (228), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 57/105 (54%)
Query: 23 LDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVR 82
+D +QLG+ +W LH+VAA YP +P+ Q+ +M F + S YPC CA D + ++
Sbjct: 2 MDVEQLGRSSWTLLHSVAASYPAQPTDQQKGEMKQFLNIFSHIYPCNWCAKDFEKYIREN 61
Query: 83 PPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERWRDGWSD 127
P HN VN+KL KP FDC +RW+DGW +
Sbjct: 62 APQVESREELGRWMCEAHNKVNKKLRKPKFDCNFWEKRWKDGWDE 106
>pdb|4E0I|A Chain A, Crystal Structure Of The C30s/c133s Mutant Of Erv1 From
Saccharomyces Cerevisiae
pdb|4E0I|B Chain B, Crystal Structure Of The C30s/c133s Mutant Of Erv1 From
Saccharomyces Cerevisiae
pdb|4E0I|C Chain C, Crystal Structure Of The C30s/c133s Mutant Of Erv1 From
Saccharomyces Cerevisiae
Length = 189
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 62/124 (50%)
Query: 4 TGSASGVDSTQQHSPSNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLS 63
TG AS + + P D +QLG+ +W LH+VAA YP +P+ Q+ +M F + S
Sbjct: 66 TGEASELMPGSRTYRKVDPPDVEQLGRSSWTLLHSVAASYPAQPTDQQKGEMKQFLNIFS 125
Query: 64 KFYPCEVCATDLAEQLKVRPPATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERWRD 123
YPC A D + ++ P HN VN+KL KP FDC +RW+D
Sbjct: 126 HIYPCNWSAKDFEKYIRENAPQVESREELGRWMCEAHNKVNKKLRKPKFDCNFWEKRWKD 185
Query: 124 GWSD 127
GW +
Sbjct: 186 GWDE 189
>pdb|1JR8|A Chain A, Crystal Structure Of Erv2p
pdb|1JR8|B Chain B, Crystal Structure Of Erv2p
pdb|1JRA|A Chain A, Crystal Structure Of Erv2p
pdb|1JRA|B Chain B, Crystal Structure Of Erv2p
pdb|1JRA|C Chain C, Crystal Structure Of Erv2p
pdb|1JRA|D Chain D, Crystal Structure Of Erv2p
Length = 117
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%)
Query: 25 KDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPP 84
K ++G+ +W + HT+ A +PD+P+ ++++ + TF L ++ YPC C+ + ++ P
Sbjct: 8 KKEVGRASWKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEKYPV 67
Query: 85 ATXXXXXXXXXXXXXHNGVNEKLGKPLFDCTKVNERWRDGWSD 127
T HN VNE L K ++DC + E + G SD
Sbjct: 68 QTSSRTAAAMWGCHIHNKVNEYLKKDIYDCATILEDYDCGCSD 110
>pdb|3GWN|A Chain A, Crystal Structure Of The Fad Binding Domain From Mimivirus
Sulfhydryl Oxidase R596
pdb|3GWN|B Chain B, Crystal Structure Of The Fad Binding Domain From Mimivirus
Sulfhydryl Oxidase R596
Length = 114
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 29/84 (34%), Gaps = 5/84 (5%)
Query: 29 GQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATXX 88
G W F H V YP P+SD ++ +F L PC +C + + A
Sbjct: 10 GTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPCRLCRESYKKFITTGKTALTN 69
Query: 89 XXXXXXXXXX-----XHNGVNEKL 107
HN VN KL
Sbjct: 70 EVLRNRHTLTKWFYDVHNAVNNKL 93
>pdb|3TD7|A Chain A, Crysal Structure Of The Mimivirus Sulfhydryl Oxidase
R596
Length = 295
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 29 GQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVC 71
G W F H V YP P+SD ++ +F L PC +C
Sbjct: 44 GTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPCRLC 86
>pdb|3GWL|A Chain A, Crystal Structure Of Asfv Pb119l, A Viral Sulfhydryl
Oxidase
pdb|3GWL|B Chain B, Crystal Structure Of Asfv Pb119l, A Viral Sulfhydryl
Oxidase
Length = 106
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 30/88 (34%)
Query: 29 GQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATXX 88
G W LH A ++ D PS ++ + + + PC C L P
Sbjct: 8 GPKYWRSLHLYAIFFSDAPSWKEKYEAIQWILNFIESLPCTRCQHHAFSYLTKNPLTLNN 67
Query: 89 XXXXXXXXXXXHNGVNEKLGKPLFDCTK 116
HN VN +L K + ++
Sbjct: 68 SEDFQYWTFAFHNNVNNRLNKKIISWSE 95
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 34 GFLHTVAAYYPDKPSSDQQ--KDMSTFFTLLS 63
G+ Y+PDKP+ D + K++S F +L+
Sbjct: 28 GYRKAALKYHPDKPTGDTEKFKEISEAFEILN 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,798,018
Number of Sequences: 62578
Number of extensions: 124607
Number of successful extensions: 135
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 120
Number of HSP's gapped (non-prelim): 17
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)