BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy513
(129 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P56213|ALR_MOUSE FAD-linked sulfhydryl oxidase ALR OS=Mus musculus GN=Gfer PE=2 SV=2
Length = 198
Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 67/111 (60%), Positives = 88/111 (79%)
Query: 19 SNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQ 78
+CP D+++LG+HTW FLHT+AAYYPD+P+ +QQ+DM+ F + SKFYPCE CA D+ ++
Sbjct: 86 EDCPQDREELGRHTWAFLHTLAAYYPDRPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKR 145
Query: 79 LKVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
+ P TS++ S SQWLC LHN VN KLGKP FDC++V+ERWRDGW DGS
Sbjct: 146 IGRNQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGS 196
>sp|Q63042|ALR_RAT FAD-linked sulfhydryl oxidase ALR OS=Rattus norvegicus GN=Gfer PE=1
SV=2
Length = 198
Score = 157 bits (396), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 66/111 (59%), Positives = 87/111 (78%)
Query: 19 SNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQ 78
+CP D+++LG++TW FLHT+AAYYPD P+ +QQ+DM+ F + SKFYPCE CA D+ ++
Sbjct: 86 EDCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKR 145
Query: 79 LKVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
+ P TS++ S SQWLC LHN VN KLGKP FDC++V+ERWRDGW DGS
Sbjct: 146 IDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGS 196
>sp|P55789|ALR_HUMAN FAD-linked sulfhydryl oxidase ALR OS=Homo sapiens GN=GFER PE=1 SV=2
Length = 205
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 66/110 (60%), Positives = 85/110 (77%)
Query: 20 NCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQL 79
+CP D+++LG+H+W LHT+AAYYPD P+ +QQ+DM+ F L SKFYPCE CA DL ++L
Sbjct: 94 DCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPCEECAEDLRKRL 153
Query: 80 KVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
P T +++ +QWLC LHN VN KLGKP FDC+KV+ERWRDGW DGS
Sbjct: 154 CRNHPDTRTRACFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDGWKDGS 203
>sp|Q8GXX0|ERV1_ARATH FAD-linked sulfhydryl oxidase ERV1 OS=Arabidopsis thaliana GN=ERV1
PE=1 SV=1
Length = 191
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 65/103 (63%)
Query: 19 SNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQ 78
S P+ K+ LG+ TW FLHT+AA YP+KP+ Q+KD+ T+LS+ YPC CA E
Sbjct: 70 STGPVTKEDLGRATWTFLHTLAAQYPEKPTRQQKKDVKELMTILSRMYPCRECADHFKEI 129
Query: 79 LKVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERW 121
L+ P SQ SQWLC +HN VN LGK +F C +V+ RW
Sbjct: 130 LRSNPAQAGSQEEFSQWLCHVHNTVNRSLGKLVFPCERVDARW 172
>sp|P27882|ERV1_YEAST Mitochondrial FAD-linked sulfhydryl oxidase ERV1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ERV1 PE=1
SV=2
Length = 189
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 70/124 (56%)
Query: 4 TGSASGVDSTQQHSPSNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLS 63
TG AS + + P D +QLG+ +W LH+VAA YP +P+ Q+ +M F + S
Sbjct: 66 TGEASELMPGSRTYRKVDPPDVEQLGRSSWTLLHSVAASYPAQPTDQQKGEMKQFLNIFS 125
Query: 64 KFYPCEVCATDLAEQLKVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRD 123
YPC CA D + ++ P S+ L +W+C HN VN+KL KP FDC +RW+D
Sbjct: 126 HIYPCNWCAKDFEKYIRENAPQVESREELGRWMCEAHNKVNKKLRKPKFDCNFWEKRWKD 185
Query: 124 GWSD 127
GW +
Sbjct: 186 GWDE 189
>sp|O14144|ERV1_SCHPO Mitochondrial FAD-linked sulfhydryl oxidase erv1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=erv1 PE=3 SV=1
Length = 182
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 58/93 (62%), Gaps = 2/93 (2%)
Query: 24 DKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKV-- 81
D +LG+ TW FLH +AA +P P+ QQ DMS+F SKFYPC CA DL +
Sbjct: 78 DVAELGRSTWTFLHAMAANFPKNPTPTQQNDMSSFLYNFSKFYPCWSCAEDLRIWMAKYG 137
Query: 82 RPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDC 114
P S+ SL +W+C HN VNE+LGKPLF+C
Sbjct: 138 NSPRVDSRESLCEWICEAHNDVNERLGKPLFNC 170
>sp|Q12284|ERV2_YEAST FAD-linked sulfhydryl oxidase ERV2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ERV2 PE=1 SV=1
Length = 196
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 64/103 (62%)
Query: 25 KDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPP 84
K ++G+ +W + HT+ A +PD+P+ ++++ + TF L ++ YPC C+ + ++ P
Sbjct: 78 KKEVGRASWKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEKYPV 137
Query: 85 ATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDGWSD 127
TSS+++ + W C +HN VNE L K ++DC + E + G SD
Sbjct: 138 QTSSRTAAAMWGCHIHNKVNEYLKKDIYDCATILEDYDCGCSD 180
>sp|Q9Y806|ERV2_SCHPO FAD-linked sulfhydryl oxidase erv2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=erv2 PE=3 SV=1
Length = 192
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 33 WGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSL 92
W +HTV + YP++P+ D++ + + + PC + +L + L V PP TSS+ +
Sbjct: 74 WKLIHTVVSNYPNRPTLDERDILRHYLFSSAITMPCGEYSVELQKILDVHPPQTSSRKAA 133
Query: 93 SQWLCWLHNGVNEKLGKPLFDCTKVNERWRDG 124
+ W C +HN +NEK+ +P C NER+ G
Sbjct: 134 TTWACKVHNQLNEKMNQPKTSCDGFNERYVIG 165
>sp|Q5UQV6|YR368_MIMIV Probable FAD-linked sulfhydryl oxidase R368 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R368 PE=3 SV=1
Length = 143
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 26 DQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRP-- 83
+Q G + W F H VA YP P+ + + TFF PC C + A+ L P
Sbjct: 4 EQWGIYGWTFSHAVALGYPINPTEEDKLRYYTFFNSYRYVLPCGKCRINYADHLNKYPLT 63
Query: 84 -PATSSQSSLSQWLCWLHNGVNEKLGKPLF 112
SS+ +L +W +HN VN GK +
Sbjct: 64 DEVLSSRENLVKWTIDIHNVVNYYTGKKML 93
>sp|Q5UP54|YR596_MIMIV Probable FAD-linked sulfhydryl oxidase R596 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R596 PE=1 SV=1
Length = 292
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 29 GQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSS 88
G W F H V YP P+SD ++ +F L PC +C + + A ++
Sbjct: 41 GTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPCRLCRESYKKFITTGKTALTN 100
Query: 89 Q-----SSLSQWLCWLHNGVNEKL 107
+ +L++W +HN VN KL
Sbjct: 101 EVLRNRHTLTKWFYDVHNAVNNKL 124
>sp|Q91FH7|VF347_IIV6 Putative FAD-linked sulfhydryl oxidase 347L OS=Invertebrate
iridescent virus 6 GN=IIV6-347L PE=3 SV=1
Length = 111
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 23 LDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVC---ATDLAEQL 79
+D G W H A+ YP P+ +F + PC C A + +
Sbjct: 4 IDPHIWGPSFWSTYHLYASSYPIHPTPIIMDAARSFVKTIPFTLPCSSCTDHAFAYIKNI 63
Query: 80 KVRPP----ATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWR 122
+ + P SS+ ++ HN VN +LGKPL + ++WR
Sbjct: 64 QKQDPDLISIVSSKMLFEKFFIDFHNSVNYRLGKPLLPESVARKKWR 110
>sp|Q196W4|VF347_IIV3 Putative FAD-linked sulfhydryl oxidase 096R OS=Invertebrate
iridescent virus 3 GN=IIV3-096R PE=3 SV=1
Length = 148
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Query: 23 LDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVC---ATDLAEQL 79
+D G W LH VAA Y D PS ++ M+ F + PC C A D +
Sbjct: 3 IDPKLWGNAFWSTLHHVAAGYNDHPSLGARQVMTNFIQSIPVLLPCAECQDHAFDYIGRA 62
Query: 80 KVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWR 122
+ SS+ L + HN VN +L KP V +R+R
Sbjct: 63 DLD-RVVSSRRQLFLFFFNFHNHVNARLNKPQLAAKTVFQRYR 104
>sp|P0C8G8|FLSO_ASFK5 FAD-linked sulfhydryl oxidase OS=African swine fever virus (isolate
Pig/Kenya/KEN-50/1950) GN=Ken-085 PE=2 SV=1
Length = 119
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 33/83 (39%)
Query: 29 GQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSS 88
G W LH A ++ D P+ ++ + + + PC +C L P ++
Sbjct: 5 GPKFWRALHLYAIFFSDAPNWKEKYEAIQWILNFIESLPCTMCRHHAFSYLTKNPLTLNN 64
Query: 89 QSSLSQWLCWLHNGVNEKLGKPL 111
W HN VN++L K +
Sbjct: 65 SEDFQYWTFAFHNNVNKRLNKKI 87
>sp|Q9JFM9|FLSO_ASFM2 FAD-linked sulfhydryl oxidase OS=African swine fever virus (isolate
Tick/Malawi/Lil 20-1/1983) GN=Mal-081 PE=2 SV=1
Length = 119
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 32/83 (38%)
Query: 29 GQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSS 88
G W LH A ++ D P ++ + + + PC +C L P ++
Sbjct: 5 GPKFWRTLHLYAIFFSDTPGWKEKYEAIQWILNFIESLPCTMCRHHAFSYLTKNPLTLNN 64
Query: 89 QSSLSQWLCWLHNGVNEKLGKPL 111
W HN VN++L K +
Sbjct: 65 SEDFQYWTFAFHNNVNKRLNKKI 87
>sp|Q65163|FLSO_ASFB7 FAD-linked sulfhydryl oxidase OS=African swine fever virus (strain
Badajoz 1971 Vero-adapted) GN=Ba71V-073 PE=1 SV=1
Length = 119
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 31/83 (37%)
Query: 29 GQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSS 88
G W LH A ++ D PS ++ + + + PC C L P ++
Sbjct: 5 GPKYWRSLHLYAIFFSDAPSWKEKYEAIQWILNFIESLPCTRCQHHAFSYLTKNPLTLNN 64
Query: 89 QSSLSQWLCWLHNGVNEKLGKPL 111
W HN VN +L K +
Sbjct: 65 SEDFQYWTFAFHNNVNNRLNKKI 87
>sp|P0C8G9|FLSO_ASFWA FAD-linked sulfhydryl oxidase OS=African swine fever virus (isolate
Warthog/Namibia/Wart80/1980) GN=War-083 PE=2 SV=1
Length = 119
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 30/83 (36%)
Query: 29 GQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSS 88
G W LH A ++ D P ++ + + + PC C L P ++
Sbjct: 5 GPKYWRALHLYAIFFSDAPGWKEKYEAIQWILNFIESLPCTRCRHHAFSYLTKNPLTLNN 64
Query: 89 QSSLSQWLCWLHNGVNEKLGKPL 111
W HN VN +L K +
Sbjct: 65 SEDFQYWTFAFHNNVNNRLNKKI 87
>sp|Q4A0T9|PANC_STAS1 Pantothenate synthetase OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=panC
PE=3 SV=1
Length = 282
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 14 QQHSPSNCPLDKDQLGQHTWGFLHTVAAY-YPDKPSSDQQKDMSTFFTLLSKFYPCEVCA 72
+++S +D L +HT G + TVA Y YP+ Q KD S F +L KF +
Sbjct: 218 ERNSEKIIKATRDYLTEHTSGTIETVAIYSYPELVEQTQIKD-SIFISLAVKFSKARLID 276
Query: 73 TDLAE 77
+ E
Sbjct: 277 NIIIE 281
>sp|Q6AUC6|QSOX1_ORYSJ Sulfhydryl oxidase 1 OS=Oryza sativa subsp. japonica GN=QSOX1 PE=2
SV=1
Length = 513
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 12/89 (13%)
Query: 33 WGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSL 92
W +H++ D S Q ++ + F+ CE C E + L
Sbjct: 316 WVLMHSLTVRIGDGES---QSTFTSICDFIHNFFICEECRKHFYEMCSSVSAPFRTAREL 372
Query: 93 SQWLCWLHNGVNEKL---------GKPLF 112
S WL HN VN +L G PLF
Sbjct: 373 SLWLWSTHNKVNMRLMKEEKDMGTGDPLF 401
>sp|Q55940|ZIAR_SYNY3 Transcriptional repressor SmtB homolog OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=ziaR PE=1 SV=1
Length = 132
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 36 LHTVAAYYPDKPSSDQQKDMSTFFT---------LLSKFYPCEVCATDLAEQLKVRPPAT 86
L V P+ S DQ + M+ FF+ L+S E+C DLA +KV A
Sbjct: 27 LEQVRQVQPEVMSLDQAQQMAEFFSALADPSRLRLMSALARQELCVCDLAAAMKVSESAV 86
Query: 87 SSQ 89
S Q
Sbjct: 87 SHQ 89
>sp|B7VL54|Y872_VIBSL UPF0061 protein VS_0872 OS=Vibrio splendidus (strain LGP32)
GN=VS_0872 PE=3 SV=1
Length = 485
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 94 QWLCWLHNGVNEKLGKPLFDCT 115
QWL W HN NE LG P F+CT
Sbjct: 33 QWLAWNHNLANE-LGFPSFECT 53
>sp|Q8W4J3|QSOX1_ARATH Sulfhydryl oxidase 1 OS=Arabidopsis thaliana GN=QSOX1 PE=2 SV=1
Length = 528
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 33 WGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQ-LKVRPPATSSQSS 91
W +H+++ D S Q + ++ F+ C+ C + L V+ P ++
Sbjct: 307 WVLMHSLSVRIEDGES---QFAFTAICDFINNFFMCDDCRRHFHDMCLSVKTPFKKARD- 362
Query: 92 LSQWLCWLHNGVNEKLGK 109
++ WL HN VNE+L K
Sbjct: 363 IALWLWSTHNKVNERLKK 380
>sp|Q6IUU3|QSOX1_RAT Sulfhydryl oxidase 1 OS=Rattus norvegicus GN=Qsox1 PE=1 SV=1
Length = 750
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 37 HTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSLSQWL 96
H + +P +P+ D Q+ + + + F+ C CA + S S+ WL
Sbjct: 422 HRYSEAHPQEPA-DGQEVLQAMRSYVQSFFGCRDCANHFEQMAAASMHQVKSPSNAVLWL 480
Query: 97 CWLHNGVNEKLGKPL 111
HN VN +L L
Sbjct: 481 WTSHNRVNARLSGAL 495
>sp|Q03479|MYOE_DICDI Myosin IE heavy chain OS=Dictyostelium discoideum GN=myoE PE=1 SV=2
Length = 1005
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 29 GQHTWGFLHTVAAYYPDKPSS-DQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATS 87
G+ W F A Y +KPS+ +QQK + L S + EV D +KV P
Sbjct: 809 GKKKWDFRRHFDADYLEKPSNPNQQKYVLAMQNLFSTYGDTEVLFADYV--IKVNPKGVP 866
Query: 88 SQSSL--SQWLCWLHNGVN---EKLGKPLFDCTKVN 118
+ + + + H+ N +K G PL D T ++
Sbjct: 867 QRRGIVVTGTNIYKHDPKNYKVKKWGTPLVDVTSIS 902
>sp|Q6F1J8|SYG_MESFL Glycine--tRNA ligase OS=Mesoplasma florum (strain ATCC 33453 / NBRC
100688 / NCTC 11704 / L1) GN=glyQS PE=3 SV=1
Length = 451
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 98 WLHNGVNEKLGKPLFDCTKVNERWR 122
W +G + PL DC K N RWR
Sbjct: 70 WKASGHIDGFNDPLIDCKKCNSRWR 94
>sp|Q5EAP5|RFX2_DANRE DNA-binding protein RFX2 OS=Danio rerio GN=rfx2 PE=2 SV=1
Length = 734
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 71 CATDLAEQLKVRPPAT-SSQSSLSQWLCWLHNGVNEKLGKP 110
C + ++L++ AT QSSL QW WL N VN+ L KP
Sbjct: 567 CDESVVQRLELDFKATLQQQSSLDQWAAWLDNVVNQVL-KP 606
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.128 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,555,438
Number of Sequences: 539616
Number of extensions: 1802879
Number of successful extensions: 2402
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2377
Number of HSP's gapped (non-prelim): 29
length of query: 129
length of database: 191,569,459
effective HSP length: 95
effective length of query: 34
effective length of database: 140,305,939
effective search space: 4770401926
effective search space used: 4770401926
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)