Query psy513
Match_columns 129
No_of_seqs 105 out of 526
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 18:05:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3355|consensus 100.0 5.4E-48 1.2E-52 289.3 11.5 113 17-129 62-174 (177)
2 COG5054 ERV1 Mitochondrial sul 100.0 9E-44 2E-48 266.1 11.0 124 4-127 58-181 (181)
3 PF04777 Evr1_Alr: Erv1 / Alr 100.0 5.6E-36 1.2E-40 205.7 8.3 94 30-123 1-95 (95)
4 KOG1731|consensus 99.8 3.8E-19 8.2E-24 153.6 7.1 90 17-109 394-491 (606)
5 PHA03005 sulfhydryl oxidase; P 99.1 1.3E-10 2.8E-15 79.9 6.6 77 24-103 2-79 (96)
6 PF04805 Pox_E10: E10-like pro 96.0 0.022 4.7E-07 37.2 4.9 49 55-103 5-54 (70)
7 PF05214 Baculo_p33: Baculovir 74.3 2.5 5.4E-05 34.1 2.2 47 31-77 107-163 (250)
8 KOG3354|consensus 66.7 4.1 8.9E-05 31.3 1.8 34 90-123 64-100 (191)
9 PF14424 Toxin-deaminase: The 52.3 5.6 0.00012 28.9 0.4 47 32-83 77-123 (133)
10 PF11571 Med27: Mediator compl 49.9 30 0.00065 23.2 3.7 28 48-75 35-64 (90)
11 KOG4167|consensus 43.9 12 0.00026 34.8 1.2 20 64-83 791-810 (907)
12 PF01265 Cyto_heme_lyase: Cyto 42.8 32 0.0007 27.9 3.4 43 66-111 112-156 (259)
13 COG5061 ERO1 Oxidoreductin, en 39.3 38 0.00082 29.1 3.4 60 13-72 247-318 (425)
14 PF05734 DUF832: Herpesvirus p 35.0 2E+02 0.0042 22.9 6.7 72 55-126 108-190 (228)
15 KOG3408|consensus 27.2 21 0.00046 26.0 0.0 15 64-79 57-71 (129)
16 PF13963 Transpos_assoc: Trans 27.1 70 0.0015 20.7 2.5 32 45-76 11-50 (77)
17 PF09412 XendoU: Endoribonucle 25.3 3.7E+02 0.008 21.7 7.7 72 24-99 53-131 (265)
18 PF13913 zf-C2HC_2: zinc-finge 24.6 10 0.00022 19.6 -1.5 13 65-77 2-14 (25)
19 PF09779 Ima1_N: Ima1 N-termin 24.0 1.5E+02 0.0032 21.2 4.0 42 31-73 82-126 (131)
20 KOG4623|consensus 23.2 2.6E+02 0.0057 25.2 6.0 63 32-96 111-174 (611)
21 PF10036 RLL: Putative carniti 23.1 2.3E+02 0.005 22.5 5.3 58 40-97 8-84 (249)
22 TIGR01609 PF_unchar_267 Plasmo 20.9 1.1E+02 0.0023 22.9 2.7 23 94-116 95-117 (146)
No 1
>KOG3355|consensus
Probab=100.00 E-value=5.4e-48 Score=289.29 Aligned_cols=113 Identities=58% Similarity=1.146 Sum_probs=111.0
Q ss_pred CCCCCCCCccccccchhHHHHHHhhhCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q psy513 17 SPSNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSLSQWL 96 (129)
Q Consensus 17 ~~~~cp~~~~~lG~a~W~llHtlaa~~p~~Pt~~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p~~v~sr~~l~~Wl 96 (129)
+...||++++++|||+|+|||||||+||+.||.+|+..|+.||.+|+.+|||.+|++||+++++++||+|+||+++..|+
T Consensus 62 ~~~~~~~~~eeLGRstWtllHT~aA~yP~~PT~eqk~~~~sFi~~~s~~yPC~eCa~dl~K~l~~nppq~~SRe~~~~W~ 141 (177)
T KOG3355|consen 62 SRKGDPPDKEELGRSTWTLLHTLAANYPDRPTPEQKDDMRSFIHLFSKFYPCGECAKDLRKILRKNPPQTSSREAFTQWL 141 (177)
T ss_pred hhcCCCchHHHHhHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHhhhCCCCCChhcHHHhhccCCCCCC
Q psy513 97 CWLHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129 (129)
Q Consensus 97 ~~~HN~VN~rLgKp~~~c~~~~~rw~~g~~~~~ 129 (129)
|.+||.||++||||.|||+.|+|||++||+||+
T Consensus 142 C~vHN~VNekLgKp~fdC~~v~erw~~g~~~~~ 174 (177)
T KOG3355|consen 142 CHVHNKVNEKLGKPKFDCRTVDERWRDGWKDGS 174 (177)
T ss_pred HHHHHHHHHHcCCCCCchhHHHHHHhchhhhcC
Confidence 999999999999999999999999999999984
No 2
>COG5054 ERV1 Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-44 Score=266.07 Aligned_cols=124 Identities=40% Similarity=0.748 Sum_probs=115.9
Q ss_pred CCCCCCccccccCCCCCCCCCccccccchhHHHHHHhhhCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCC
Q psy513 4 TGSASGVDSTQQHSPSNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRP 83 (129)
Q Consensus 4 ~~~~~~~~~~~~~~~~~cp~~~~~lG~a~W~llHtlaa~~p~~Pt~~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p 83 (129)
+|.++..----.++++.-|++++++|||+|+|||||+|+||++||++|+..++.||.+|+.+|||.+|++||++++..+|
T Consensus 58 ~~~~k~~~p~t~~~~k~d~~~~~elGRssWtllHtv~A~yP~~PT~~qr~~l~sFl~~~s~~yPCgeCs~~f~K~l~~~p 137 (181)
T COG5054 58 DGEGKERKPITMMSTKHDNPDVEELGRSSWTLLHTVAANYPARPTPQQRDDLRSFLFLFSITYPCGECSKHFQKLLDVYP 137 (181)
T ss_pred cccccccCCccccccccCchHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhheeecHHHHHHHHHHHhhCC
Confidence 45555555555667788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhHHHHhhhCCCCCChhcHHHhhccCCCC
Q psy513 84 PATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDGWSD 127 (129)
Q Consensus 84 ~~v~sr~~l~~Wl~~~HN~VN~rLgKp~~~c~~~~~rw~~g~~~ 127 (129)
|+|+||+++..|+|++||.||+|||||.|||..+.|||.+||++
T Consensus 138 pqv~SRea~~~W~CevHN~VNekL~Kp~~dC~~~~e~~~~G~~~ 181 (181)
T COG5054 138 PQVSSREAATTWACEVHNKVNEKLGKPKFDCDTWNERYDCGCDT 181 (181)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHhCCCCcccchhHHHhhccCCC
Confidence 99999999999999999999999999999999999999999985
No 3
>PF04777 Evr1_Alr: Erv1 / Alr family; InterPro: IPR006863 Biogenesis of Fe/S clusters involves a number of essential mitochondrial proteins. Erv1p of Saccharomyces cerevisiae (Baker's yeast) mitochondria is required for the maturation of Fe/S proteins in the cytosol. The ALR (augmenter of liver regeneration) represents a mammalian ortholog of yeast Erv1p. Both Erv1p and full-length ALR are located in the mitochondrial intermembrane and it is thought to operate downstream of the mitochondrial ABC transporter [].; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process; PDB: 3MBG_C 3U2L_A 3U2M_A 3QD9_D 3QCP_A 3O55_A 2HJ3_B 3GWN_A 3T58_D 3T59_B ....
Probab=100.00 E-value=5.6e-36 Score=205.66 Aligned_cols=94 Identities=43% Similarity=0.908 Sum_probs=90.1
Q ss_pred cchhHHHHHHhhhCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhHHHHhhhCC
Q psy513 30 QHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSLSQWLCWLHNGVNEKLGK 109 (129)
Q Consensus 30 ~a~W~llHtlaa~~p~~Pt~~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p~~v~sr~~l~~Wl~~~HN~VN~rLgK 109 (129)
+|+|+|||++|++||+.|+.++++.+..|+.+|..+|||.+||.||.++++++|++|+||+++++|||++||.||+||||
T Consensus 1 c~~W~llH~~a~~~p~~p~~~~~~~~~~~~~~~~~~~pC~~C~~hf~~~~~~~~~~v~sr~~l~~Wl~~~HN~VN~rL~k 80 (95)
T PF04777_consen 1 CGLWTLLHTLAAYYPENPTEEEKQVMEAFFRSFPHFFPCEECRNHFSKYIKKNPPQVSSREDLVLWLWRAHNKVNERLGK 80 (95)
T ss_dssp HHHHHHHHHHHHTSHSSHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHSGGGGSSHHHHHHHHHHHHHHHHHHTTT
T ss_pred CchHHHHHHHHhcCccCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-ChhcHHHhhcc
Q psy513 110 PLF-DCTKVNERWRD 123 (129)
Q Consensus 110 p~~-~c~~~~~rw~~ 123 (129)
|++ ++..+.++|.+
T Consensus 81 ~~~~~~~~~~~~~~~ 95 (95)
T PF04777_consen 81 PIFCDDPKFKEQWPT 95 (95)
T ss_dssp STTTSGTTHHHHHT-
T ss_pred CCCCCcHHHHhHcCC
Confidence 996 88899999964
No 4
>KOG1731|consensus
Probab=99.77 E-value=3.8e-19 Score=153.59 Aligned_cols=90 Identities=19% Similarity=0.354 Sum_probs=73.1
Q ss_pred CCCCCCCCcccccc---chhHHHHHHhhhCCCCCCHHH----HHHHHHHHHHhhhhcCChhHHHHHHHHHHhCC-CCCCC
Q psy513 17 SPSNCPLDKDQLGQ---HTWGFLHTVAAYYPDKPSSDQ----QKDMSTFFTLLSKFYPCEVCATDLAEQLKVRP-PATSS 88 (129)
Q Consensus 17 ~~~~cp~~~~~lG~---a~W~llHtlaa~~p~~Pt~~~----~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p-~~v~s 88 (129)
..-+|-.++..+++ ++|+|||++|++.-..+...+ ...+..|++ +||.|.+||.||++|..+.. ..|.+
T Consensus 394 ~w~gC~GS~P~~RGftCgLWTLFH~lTV~Aa~~~~~~~~~~~l~~l~~~vk---~FFgC~dC~~HF~~Ma~~~~~~~V~~ 470 (606)
T KOG1731|consen 394 TWVGCAGSKPHLRGFTCGLWTLFHALTVEAAKQEVHFAFTPILDVLHGFVK---NFFGCTDCREHFQKMATRRKLHRVRR 470 (606)
T ss_pred eeEeecCCCCccCCcchHHHHHHHHhhhhhcccccccchhccchhhHHHHH---HccCchHHHHHHHHHHHhhcccccCC
Confidence 44678888888776 999999999998655543322 334445776 57999999999999997654 78999
Q ss_pred HHHHHHHHHHHhHHHHhhhCC
Q psy513 89 QSSLSQWLCWLHNGVNEKLGK 109 (129)
Q Consensus 89 r~~l~~Wl~~~HN~VN~rLgK 109 (129)
+++.++|||++||.||+||++
T Consensus 471 ped~vLWLW~aHN~VN~RLaG 491 (606)
T KOG1731|consen 471 PEDVVLWLWSAHNEVNARLAG 491 (606)
T ss_pred hhhhhhHHHHHhhHHHHHhcc
Confidence 999999999999999999974
No 5
>PHA03005 sulfhydryl oxidase; Provisional
Probab=99.15 E-value=1.3e-10 Score=79.92 Aligned_cols=77 Identities=13% Similarity=0.230 Sum_probs=61.4
Q ss_pred CccccccchhHHHHHHhhhCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCCCCCCCHHHHHHHHH-HHhHH
Q psy513 24 DKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSLSQWLC-WLHNG 102 (129)
Q Consensus 24 ~~~~lG~a~W~llHtlaa~~p~~Pt~~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p~~v~sr~~l~~Wl~-~~HN~ 102 (129)
+|..||||.|+.+|.++.+|+..++ .+..+..+.++...+||..|+.|..+.+.++-..-++.-..+.++. .++|.
T Consensus 2 dPk~WGra~W~vIFivi~k~~~~~~---iE~cK~~lytI~~tLPC~~Cr~HA~~ai~knnimSs~diNyi~~FfI~l~Nn 78 (96)
T PHA03005 2 NPKYWGRAIWTVIFIVISKAKLDGN---IEACKRKLYTICSTLPCPACRRHAKEAIEKNNIMSSNDLNYIYFFFISLFNN 78 (96)
T ss_pred CcchhhhhHHHHHHHHHHhccCCCc---HHHHHHHHHHhhhcCCCHHHHHHHHHHHhhcCccccCCccchhHHHHHHHHH
Confidence 6789999999999999999998874 4567777788889999999999999999887755444445554444 77775
Q ss_pred H
Q psy513 103 V 103 (129)
Q Consensus 103 V 103 (129)
.
T Consensus 79 l 79 (96)
T PHA03005 79 L 79 (96)
T ss_pred h
Confidence 4
No 6
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=95.96 E-value=0.022 Score=37.24 Aligned_cols=49 Identities=14% Similarity=0.244 Sum_probs=32.6
Q ss_pred HHHHHHHhhhhcCChhHHHHHHHHHHhCCCCCCCHHHHHHHHH-HHhHHH
Q psy513 55 MSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSLSQWLC-WLHNGV 103 (129)
Q Consensus 55 ~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p~~v~sr~~l~~Wl~-~~HN~V 103 (129)
.+.=+..+-..+||..||.|..+.+.++-..-++--..+.++. .++|..
T Consensus 5 cKr~ly~I~~tLPC~~Cr~HA~~ai~kNNiMSs~DiNyIy~FFI~lfNnl 54 (70)
T PF04805_consen 5 CKRKLYTICSTLPCPECRIHAKEAIQKNNIMSSNDINYIYFFFISLFNNL 54 (70)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcCccccCCccchHHHHHHHHHHh
Confidence 3444445567899999999999999887755444444444443 676643
No 7
>PF05214 Baculo_p33: Baculovirus P33; InterPro: IPR007879 This family consists of a series of baculoviral 33 kDa early protein homologues.; PDB: 3QZY_B 3P0K_A.
Probab=74.29 E-value=2.5 Score=34.09 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=30.7
Q ss_pred chhHHHHHHhhhCC------CCCC----HHHHHHHHHHHHHhhhhcCChhHHHHHHH
Q psy513 31 HTWGFLHTVAAYYP------DKPS----SDQQKDMSTFFTLLSKFYPCEVCATDLAE 77 (129)
Q Consensus 31 a~W~llHtlaa~~p------~~Pt----~~~~~~~~~fi~~~~~~~PC~~Cr~hf~~ 77 (129)
-.|=.+|.|+.-.. ++-+ ....+.++..+.++-..+-|.-||+|+..
T Consensus 107 tIWD~IH~l~li~DdmV~nR~~~~~d~v~~~l~n~K~lfYNiF~~L~C~mC~~HYl~ 163 (250)
T PF05214_consen 107 TIWDSIHFLCLIIDDMVDNRHKLSYDFVSNQLKNMKWLFYNIFFKLFCPMCRDHYLT 163 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHHT---SSS-HHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhHhheeCChHHhHHHee
Confidence 47999999985321 2222 23456788888887777899999999876
No 8
>KOG3354|consensus
Probab=66.73 E-value=4.1 Score=31.34 Aligned_cols=34 Identities=18% Similarity=0.440 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhHHHHhhhCCCC---CChhcHHHhhcc
Q psy513 90 SSLSQWLCWLHNGVNEKLGKPL---FDCTKVNERWRD 123 (129)
Q Consensus 90 ~~l~~Wl~~~HN~VN~rLgKp~---~~c~~~~~rw~~ 123 (129)
+|-.-||+++|+...++|.+-+ ..|+.+.++||+
T Consensus 64 ~DR~pWL~~i~~~~~~~l~~~q~vVlACSaLKk~YRd 100 (191)
T KOG3354|consen 64 DDRWPWLKKIAVELRKALASGQGVVLACSALKKKYRD 100 (191)
T ss_pred ccccHHHHHHHHHHHHHhhcCCeEEEEhHHHHHHHHH
Confidence 4557899999999999987644 889999999985
No 9
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=52.34 E-value=5.6 Score=28.88 Aligned_cols=47 Identities=23% Similarity=0.461 Sum_probs=33.4
Q ss_pred hhHHHHHHhhhCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCC
Q psy513 32 TWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRP 83 (129)
Q Consensus 32 ~W~llHtlaa~~p~~Pt~~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p 83 (129)
==++|..+|.++..++.... .=|..|.+.-||..|..=+.++.+++|
T Consensus 77 E~KiL~~ia~~l~~~~~~~~-----G~i~l~te~~pC~SC~~vi~qF~~~~p 123 (133)
T PF14424_consen 77 EYKILEDIAKKLGDNPDPSG-----GTIDLFTELPPCESCSNVIEQFKKDFP 123 (133)
T ss_pred HHHHHHHHHHHhccccccCC-----ceEEEEecCCcChhHHHHHHHHHHHCC
Confidence 44666777776666555431 124556778999999999999998888
No 10
>PF11571 Med27: Mediator complex subunit 27; InterPro: IPR021627 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Mediator exists in two major forms in human cells: a smaller form that interacts strongly with pol II and activates transcription, and a large form that does not interact strongly with pol II and does not directly activate transcription. The ubiquitous expression of Med27 mRNA suggests a universal requirement for Med27 in transcriptional initiation. Loss of Crsp34/Med27 decreases amacrine cell number, but increases the number of rod photoreceptor cells [].
Probab=49.86 E-value=30 Score=23.19 Aligned_cols=28 Identities=14% Similarity=0.418 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHHhhhh--cCChhHHHHH
Q psy513 48 SSDQQKDMSTFFTLLSKF--YPCEVCATDL 75 (129)
Q Consensus 48 t~~~~~~~~~fi~~~~~~--~PC~~Cr~hf 75 (129)
.......+-.||.++..+ =||..|.++.
T Consensus 35 ~~~~l~~ll~~l~sY~~lfs~pC~~C~klL 64 (90)
T PF11571_consen 35 PEWDLRSLLDWLSSYRNLFSTPCKKCGKLL 64 (90)
T ss_pred CccHHHHHHHHHHHHhhhccchhhHHHhHh
Confidence 334566677777777665 4899999998
No 11
>KOG4167|consensus
Probab=43.89 E-value=12 Score=34.78 Aligned_cols=20 Identities=15% Similarity=0.458 Sum_probs=16.5
Q ss_pred hhcCChhHHHHHHHHHHhCC
Q psy513 64 KFYPCEVCATDLAEQLKVRP 83 (129)
Q Consensus 64 ~~~PC~~Cr~hf~~~~~~~p 83 (129)
-+|||.+|.+.|.++-.+|-
T Consensus 791 giFpCreC~kvF~KiKSrNA 810 (907)
T KOG4167|consen 791 GIFPCRECGKVFFKIKSRNA 810 (907)
T ss_pred ceeehHHHHHHHHHHhhhhH
Confidence 37999999999999765554
No 12
>PF01265 Cyto_heme_lyase: Cytochrome c/c1 heme lyase; InterPro: IPR000511 Cytochrome c haem-lyase (CCHL) (4.4.1.17 from EC) and cytochrome Cc1 haem-lyase (CC1HL) [] are mitochondrial enzymes that catalyse the covalent attachment of a haem group on two cysteine residues of cytochrome c and c1. These two enzymes are functionally and evolutionary related. There are two conserved regions, the first is located in the central section and the second in the C-terminal section. Both patterns contain conserved histidine, tryptophan and acidic residues which could be important for the interaction of the enzymes with the apoproteins and/or the haem group.; GO: 0004408 holocytochrome-c synthase activity, 0005739 mitochondrion
Probab=42.77 E-value=32 Score=27.92 Aligned_cols=43 Identities=21% Similarity=0.287 Sum_probs=26.5
Q ss_pred cCChhHHHHHHHHH-HhCC-CCCCCHHHHHHHHHHHhHHHHhhhCCCC
Q psy513 66 YPCEVCATDLAEQL-KVRP-PATSSQSSLSQWLCWLHNGVNEKLGKPL 111 (129)
Q Consensus 66 ~PC~~Cr~hf~~~~-~~~p-~~v~sr~~l~~Wl~~~HN~VN~rLgKp~ 111 (129)
||=+. -|.+.+ .++- +.-....+-+.=+..+||.||++.=+.+
T Consensus 112 YPS~q---qFynAm~RKg~~p~~d~~~~dm~~vV~IHN~vNE~aW~~I 156 (259)
T PF01265_consen 112 YPSPQ---QFYNAMKRKGWNPSDDIPEEDMETVVPIHNAVNERAWKEI 156 (259)
T ss_pred cCCHH---HHHHHHHccccCcCCCCCHHHHHHHHHHhhhhhHHHHHHH
Confidence 55543 444444 3332 2234457778888999999999964433
No 13
>COG5061 ERO1 Oxidoreductin, endoplasmic reticulum membrane-associated protein involved in disulfide bond formation [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=39.34 E-value=38 Score=29.06 Aligned_cols=60 Identities=23% Similarity=0.412 Sum_probs=42.4
Q ss_pred cccCCCCCCCCCccccccchhHHHHHHhhh---------CCCCCCHHHHHHHHHHHHHhhhh---cCChhHH
Q psy513 13 TQQHSPSNCPLDKDQLGQHTWGFLHTVAAY---------YPDKPSSDQQKDMSTFFTLLSKF---YPCEVCA 72 (129)
Q Consensus 13 ~~~~~~~~cp~~~~~lG~a~W~llHtlaa~---------~p~~Pt~~~~~~~~~fi~~~~~~---~PC~~Cr 72 (129)
.+.++-+.||.++.++..++=.++|.+-+. +...++..-+..++.-++.+..+ -.|+.||
T Consensus 247 ~~l~sftFC~~~~~e~~~k~~~lis~i~~~~k~fne~q~fa~e~Si~lKd~frehfr~vs~lMdcVgCekCr 318 (425)
T COG5061 247 VDLSSFTFCPTDKDELSGKLSSLISAIRAQGKTFNEIQPFALEKSIQLKDRFREHFRDVSRLMDCVGCEKCR 318 (425)
T ss_pred cCCcccccCCccHHHHHhHHHHHHHHHHhccccccceecccCccchhhhHHHHHHHHhHHHHHHhcCchhhh
Confidence 345678999999999999988888877652 44455555566677777755444 5566666
No 14
>PF05734 DUF832: Herpesvirus protein of unknown function (DUF832); InterPro: IPR008550 This entry contains BRRF2 from Epstein-Barr virus. This protein family is restricted to the gammaherpesvirus's; it's function is not known. The protein is phosphorylated and is associated with the viral tegument [].
Probab=34.97 E-value=2e+02 Score=22.94 Aligned_cols=72 Identities=18% Similarity=0.259 Sum_probs=43.6
Q ss_pred HHHHHHHhhhhcCChhHHHHHHHHHH----hCCCCC--CCHHHH-HHHHHHHhHHH--HhhhCCCCCChhcHH--Hhhcc
Q psy513 55 MSTFFTLLSKFYPCEVCATDLAEQLK----VRPPAT--SSQSSL-SQWLCWLHNGV--NEKLGKPLFDCTKVN--ERWRD 123 (129)
Q Consensus 55 ~~~fi~~~~~~~PC~~Cr~hf~~~~~----~~p~~v--~sr~~l-~~Wl~~~HN~V--N~rLgKp~~~c~~~~--~rw~~ 123 (129)
...+...+-+-..|.+|-.--....+ ..||.+ .++... ..||..+||.+ ......++|+-..+. -.+..
T Consensus 108 k~rL~llle~~CGC~~C~~~~~~L~~~~~~~rpPkl~PHt~~c~a~~~L~~l~n~avl~~~~~vs~~~l~~L~~~p~~~~ 187 (228)
T PF05734_consen 108 KTRLALLLEDSCGCPECMRTVKGLTKIKGLFRPPKLNPHTKHCYAENFLTSLYNQAVLCNSVSVSEFDLRDLVPDPDEFP 187 (228)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhhcccCCCCCCCcHhHhHHHHHHHHHHHHHHhcCCCCcchhhHHHHccCchhcc
Confidence 34555555578999999866554432 235554 333333 57999999987 555566777776653 33444
Q ss_pred CCC
Q psy513 124 GWS 126 (129)
Q Consensus 124 g~~ 126 (129)
|++
T Consensus 188 ~~~ 190 (228)
T PF05734_consen 188 DFD 190 (228)
T ss_pred CCC
Confidence 443
No 15
>KOG3408|consensus
Probab=27.16 E-value=21 Score=26.00 Aligned_cols=15 Identities=33% Similarity=0.793 Sum_probs=11.4
Q ss_pred hhcCChhHHHHHHHHH
Q psy513 64 KFYPCEVCATDLAEQL 79 (129)
Q Consensus 64 ~~~PC~~Cr~hf~~~~ 79 (129)
+|| |-+|+.+|....
T Consensus 57 qfy-Ci~CaRyFi~~~ 71 (129)
T KOG3408|consen 57 QFY-CIECARYFIDAK 71 (129)
T ss_pred eee-hhhhhhhhcchH
Confidence 444 999999997643
No 16
>PF13963 Transpos_assoc: Transposase-associated domain
Probab=27.11 E-value=70 Score=20.69 Aligned_cols=32 Identities=19% Similarity=0.410 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHHHHHh--------hhhcCChhHHHHHH
Q psy513 45 DKPSSDQQKDMSTFFTLL--------SKFYPCEVCATDLA 76 (129)
Q Consensus 45 ~~Pt~~~~~~~~~fi~~~--------~~~~PC~~Cr~hf~ 76 (129)
...+.+-.+.+..||... ...+||..|++...
T Consensus 11 ~r~s~ey~~Gv~~Fi~~A~~~~~~~~~i~CPC~~C~N~~~ 50 (77)
T PF13963_consen 11 DRFSPEYIEGVEEFIDFAFSNPSNDNMIRCPCRKCKNEKR 50 (77)
T ss_pred CCCCHHHHHHHHHHHHHHHhcccCCCceECCchhhccCcc
Confidence 345667777788887652 24699999997643
No 17
>PF09412 XendoU: Endoribonuclease XendoU; InterPro: IPR018998 This is a entry represents endoribonucleases involved in RNA biosynthesis which has been named XendoU in Xenopus laevis (African clawed frog). XendoU is a U-specific metal dependent enzyme that produces products with a 2'-3' cyclic phosphate termini. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 2C1W_C.
Probab=25.26 E-value=3.7e+02 Score=21.74 Aligned_cols=72 Identities=11% Similarity=0.177 Sum_probs=44.6
Q ss_pred Cccccc-cchhHHHHHHhhhC------CCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q psy513 24 DKDQLG-QHTWGFLHTVAAYY------PDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSLSQWL 96 (129)
Q Consensus 24 ~~~~lG-~a~W~llHtlaa~~------p~~Pt~~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p~~v~sr~~l~~Wl 96 (129)
+++.+. ..+...|=.+-.+| +|.-|.+++++...||..+... ..=+...+++..-.....+..++..+|
T Consensus 53 ~~~~~~~~pTy~af~~LlDNY~~~tg~~E~~T~ee~~E~~~FLd~i~~T----~vmk~~~~fL~~k~~~~~~~~~Fk~~L 128 (265)
T PF09412_consen 53 NESLLKSKPTYAAFIALLDNYERDTGVAEVVTPEERQEQDAFLDAIMET----KVMKLAHQFLVSKGLAPSDEAEFKKQL 128 (265)
T ss_dssp -HHHHTTTSTHHHHHHHHHHTTSSSSTTT---HHHHHHHHHHHHHHTTS----HHHHHHHHHHHHTTSS-SSHHHHHHHH
T ss_pred CHHHhcCCCHHHHHHHHHhccccccCCcccCCHHHHHHHHHHHHHHHcC----HHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 444555 56666666665555 4556788999999999987554 333345555654444668888888888
Q ss_pred HHH
Q psy513 97 CWL 99 (129)
Q Consensus 97 ~~~ 99 (129)
.++
T Consensus 129 ~~i 131 (265)
T PF09412_consen 129 KNI 131 (265)
T ss_dssp HHH
T ss_pred HHh
Confidence 754
No 18
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=24.64 E-value=10 Score=19.62 Aligned_cols=13 Identities=23% Similarity=0.925 Sum_probs=10.3
Q ss_pred hcCChhHHHHHHH
Q psy513 65 FYPCEVCATDLAE 77 (129)
Q Consensus 65 ~~PC~~Cr~hf~~ 77 (129)
+.||..|...|..
T Consensus 2 l~~C~~CgR~F~~ 14 (25)
T PF13913_consen 2 LVPCPICGRKFNP 14 (25)
T ss_pred CCcCCCCCCEECH
Confidence 5789999988754
No 19
>PF09779 Ima1_N: Ima1 N-terminal domain; InterPro: IPR018617 Members of this family of uncharacterised novel proteins have no known function.
Probab=23.98 E-value=1.5e+02 Score=21.20 Aligned_cols=42 Identities=17% Similarity=0.467 Sum_probs=27.9
Q ss_pred chhHHHHHHhhhCCCCCC--HH-HHHHHHHHHHHhhhhcCChhHHH
Q psy513 31 HTWGFLHTVAAYYPDKPS--SD-QQKDMSTFFTLLSKFYPCEVCAT 73 (129)
Q Consensus 31 a~W~llHtlaa~~p~~Pt--~~-~~~~~~~fi~~~~~~~PC~~Cr~ 73 (129)
.+=++++.||.+.|+... .+ --+.+..|-+.+-.-|| ..|..
T Consensus 82 NQ~L~~~~LA~f~P~~e~p~y~~~~~e~~~Yr~~LE~rYP-~lC~~ 126 (131)
T PF09779_consen 82 NQHLKINQLASFLPDPEDPEYANYEEELPEYRRSLEQRYP-QLCSS 126 (131)
T ss_pred HHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHhh-Hhhhh
Confidence 356788899998886533 22 23568888888878886 44443
No 20
>KOG4623|consensus
Probab=23.19 E-value=2.6e+02 Score=25.24 Aligned_cols=63 Identities=17% Similarity=0.395 Sum_probs=40.2
Q ss_pred hhHHHHHHhhhCCCCCCHHHHHHHHHHHHHhhhhcC-ChhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q psy513 32 TWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYP-CEVCATDLAEQLKVRPPATSSQSSLSQWL 96 (129)
Q Consensus 32 ~W~llHtlaa~~p~~Pt~~~~~~~~~fi~~~~~~~P-C~~Cr~hf~~~~~~~p~~v~sr~~l~~Wl 96 (129)
+=+..-.+|..-|-+...- -++++.+-+.+-+.|| |.+|-.+-.+.+.++...+.+ .-+..||
T Consensus 111 Q~ik~~kLA~FeP~de~ry-deeLevYR~~LE~mf~LCs~C~~~V~~~L~e~k~~~~~-k~l~Y~l 174 (611)
T KOG4623|consen 111 QLIKNRKLADFEPPDEQRY-DEELEVYRKSLEEMFPLCSECYDSVQDQLDENKYEAKN-KVLGYWL 174 (611)
T ss_pred HHHHHHHHhhcCCCchhhH-HHHHHHHHHHHHHHcccchHHHHHHHHhhhhhHHHHHH-HHHHHHH
Confidence 3344455666666332221 1356666666655555 999999999888877766666 6677787
No 21
>PF10036 RLL: Putative carnitine deficiency-associated protein; InterPro: IPR019265 This family of proteins conserved from nematodes to humans is of approximately 250 amino acids. It is purported to be carnitine deficiency-associated protein but this could not be confirmed. It carries a characteristic RLL sequence-motif. The function is unknown.
Probab=23.06 E-value=2.3e+02 Score=22.53 Aligned_cols=58 Identities=22% Similarity=0.356 Sum_probs=37.2
Q ss_pred hhhCCC--CCCHHHHHHHHHHHHHh----hhhcCChhH-----------HHHHHHHHHhC--CCCCCCHHHHHHHHH
Q psy513 40 AAYYPD--KPSSDQQKDMSTFFTLL----SKFYPCEVC-----------ATDLAEQLKVR--PPATSSQSSLSQWLC 97 (129)
Q Consensus 40 aa~~p~--~Pt~~~~~~~~~fi~~~----~~~~PC~~C-----------r~hf~~~~~~~--p~~v~sr~~l~~Wl~ 97 (129)
|..||. .....+...++.+|-.+ .++||=++. ..+|.+|++.. |....++...+.||-
T Consensus 8 aL~Yp~~~~~n~~d~~~fr~lVvWLEDqKIR~Y~iedR~~LR~i~s~~W~~~~~kYl~dl~cP~~~~~~~~~ldWLL 84 (249)
T PF10036_consen 8 ALGYPKPDSFNIDDEEEFRSLVVWLEDQKIRHYKIEDREKLRNIDSSDWPKAFEKYLKDLGCPFSSESRQEQLDWLL 84 (249)
T ss_pred HcCCCCCCCCCCCCHHHHHHHHHHHhhhhhccCCHhhHHHHhcCCcchHHHHHHHHHHhcCCCCcchhHHHHHHHHH
Confidence 456772 33334444444444443 357777665 36899998764 346899999999986
No 22
>TIGR01609 PF_unchar_267 Plasmodium falciparum uncharacterized protein TIGR01609. This model represents a family of at least four proteins in Plasmodium falciparum. An interesting feature is five perfectly conserved Trp residues.
Probab=20.88 E-value=1.1e+02 Score=22.92 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=19.7
Q ss_pred HHHHHHhHHHHhhhCCCCCChhc
Q psy513 94 QWLCWLHNGVNEKLGKPLFDCTK 116 (129)
Q Consensus 94 ~Wl~~~HN~VN~rLgKp~~~c~~ 116 (129)
.+|-.+|+.+|+.|.-|.++...
T Consensus 95 KYLe~Vh~~IN~~Lnd~~~sl~d 117 (146)
T TIGR01609 95 KYLRRVHGHINSDLNDPSLTLVD 117 (146)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHH
Confidence 56789999999999998888763
Done!