Query psy513
Match_columns 129
No_of_seqs 105 out of 526
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 18:06:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy513.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/513hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5s_A FAD-linked sulfhydryl o 100.0 3.6E-51 1.2E-55 294.9 13.1 113 17-129 12-124 (126)
2 2hj3_A Sulfhydryl oxidase ERV1 100.0 1.2E-49 4.1E-54 286.7 11.2 113 17-129 2-115 (125)
3 1jr8_A ERV2 protein, mitochond 100.0 6E-49 2E-53 280.1 9.7 109 20-128 3-111 (117)
4 4e0i_A Mitochondrial FAD-linke 100.0 3.1E-47 1.1E-51 290.6 13.4 114 14-127 76-189 (189)
5 4e0h_A Mitochondrial FAD-linke 100.0 7.9E-47 2.7E-51 264.5 11.9 105 23-127 2-106 (106)
6 3gwl_A P14, FAD-linked sulfhyd 100.0 8.4E-43 2.9E-47 244.6 11.2 98 26-123 5-102 (106)
7 3gwn_A Probable FAD-linked sul 100.0 9.9E-43 3.4E-47 246.9 8.2 102 22-123 3-110 (114)
8 3td7_A FAD-linked sulfhydryl o 100.0 2.6E-32 8.9E-37 218.4 8.9 105 23-127 38-151 (295)
9 3t58_A Sulfhydryl oxidase 1; o 99.9 4.4E-27 1.5E-31 200.7 3.9 104 14-117 358-475 (519)
10 3llk_A Sulfhydryl oxidase 1; d 99.9 3.8E-25 1.3E-29 175.7 8.6 101 14-117 101-218 (261)
11 3qcp_A QSOX from trypanosoma b 99.9 1.9E-24 6.5E-29 183.3 4.2 93 17-120 286-387 (470)
12 3p0k_A Sulfhydryl oxidase; 4-h 75.4 4.6 0.00016 31.7 5.1 47 31-77 109-165 (266)
13 2lvu_A Zinc finger and BTB dom 50.4 4.7 0.00016 18.3 0.0 12 66-77 3-14 (26)
14 3vow_A Probable DNA DC->DU-edi 37.8 19 0.00064 26.9 2.4 19 66-84 95-113 (190)
15 3v4k_A DNA DC->DU-editing enzy 36.9 17 0.00057 27.4 2.0 19 66-84 109-127 (203)
16 2lvt_A Zinc finger and BTB dom 42.3 7.6 0.00026 17.9 0.0 13 66-78 3-15 (29)
17 2lvr_A Zinc finger and BTB dom 39.8 8.8 0.0003 17.6 0.0 14 65-78 3-16 (30)
18 2ajj_A NS5A, nonstructural pro 24.1 24 0.00082 18.4 0.7 17 93-109 6-22 (28)
19 2kfq_A FP1; protein, de novo p 23.7 11 0.00037 18.2 -0.8 14 66-79 3-16 (32)
No 1
>3u5s_A FAD-linked sulfhydryl oxidase ALR; flavin, liver, oxidoreductase; HET: FAD; 1.50A {Homo sapiens} PDB: 3mbg_A* 3tk0_A* 3o55_A* 3u2m_A* 3u2l_A* 3r7c_A* 1oqc_A*
Probab=100.00 E-value=3.6e-51 Score=294.86 Aligned_cols=113 Identities=54% Similarity=1.027 Sum_probs=110.7
Q ss_pred CCCCCCCCccccccchhHHHHHHhhhCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q psy513 17 SPSNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSLSQWL 96 (129)
Q Consensus 17 ~~~~cp~~~~~lG~a~W~llHtlaa~~p~~Pt~~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p~~v~sr~~l~~Wl 96 (129)
..++||+|+++||+++|++|||||++||++|+.+++..|+.||.+|+.+|||.+|+.||.++++++|+.++||++|++||
T Consensus 12 ~~~~~P~d~~elG~atW~~LHtia~~yP~~Pt~~~k~~~~~fi~~l~~~lPC~~C~~hf~~~l~~~pp~l~SR~~l~~Wl 91 (126)
T 3u5s_A 12 FREDXPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSKFYPXEEXAEDLRKRLARNHPDTRTRAAFTQWL 91 (126)
T ss_dssp CCSSSCCCHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHHHHH
T ss_pred ccCCCCCCHHHcCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHCccccCCHHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHhhhCCCCCChhcHHHhhccCCCCCC
Q psy513 97 CWLHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129 (129)
Q Consensus 97 ~~~HN~VN~rLgKp~~~c~~~~~rw~~g~~~~~ 129 (129)
|.+||.||+|||||+|||+.|.|||++||+||+
T Consensus 92 ~~~HN~VN~rLgKp~fd~~~~~ery~~g~~dg~ 124 (126)
T 3u5s_A 92 XHLHNEVNRKLGKPDFDXSKVDERWRDGWKDGS 124 (126)
T ss_dssp HHHHHHHHHHTTCCCCCGGGHHHHHTTCCTTST
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHccCCCCCC
Confidence 999999999999999999999999999999996
No 2
>2hj3_A Sulfhydryl oxidase ERV1P; four-helix bundle, flavin adenine dinucleotide, oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana}
Probab=100.00 E-value=1.2e-49 Score=286.67 Aligned_cols=113 Identities=45% Similarity=0.884 Sum_probs=100.5
Q ss_pred CCCCCCCCccccccchhHHHHHHhhhCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q psy513 17 SPSNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSLSQWL 96 (129)
Q Consensus 17 ~~~~cp~~~~~lG~a~W~llHtlaa~~p~~Pt~~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p~~v~sr~~l~~Wl 96 (129)
++.+||+++++||+++|+||||||++||++|+.++++.++.||.+|.+||||.+|+.||.++++++|++|+||+++++||
T Consensus 2 ~~~~~p~~~~~lG~slW~llHtlaa~yp~~pt~~~~~~~~~f~~~~~~fypC~~Ca~hF~~~~~~~p~~v~sr~~~~lWL 81 (125)
T 2hj3_A 2 SHMTGPVTKEDLGRATWTFLHTLAAQYPEKPTRQQKKDVKELMTILSRMYPCRECADHFKEILRSNPAQAGSQEEFSQWL 81 (125)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHHHHH
T ss_pred CCCCCCCCccccCcchhHHHHHHHhhCcCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHhhhCCCCCChhcHHHhhccCCCC-CC
Q psy513 97 CWLHNGVNEKLGKPLFDCTKVNERWRDGWSD-GS 129 (129)
Q Consensus 97 ~~~HN~VN~rLgKp~~~c~~~~~rw~~g~~~-~~ 129 (129)
|++||.||+|||||+|+|+.|.|||++||+| |+
T Consensus 82 w~~HN~VN~rL~Kp~f~c~~~~~rw~~g~~d~~~ 115 (125)
T 2hj3_A 82 CHVHNTVNRSLGKLVFPCERVDARWGKLECEQKS 115 (125)
T ss_dssp HHHHHHHHHHTTCCCCCTTSHHHHCC--------
T ss_pred HHHHHHHHHhhCCCCCCHHHHHHHhccCCCCCCC
Confidence 9999999999999999999999999999999 85
No 3
>1jr8_A ERV2 protein, mitochondrial; FAD, sulfhydryl oxidase, helical bundle, CXXC, oxidoreductase; HET: FAD; 1.50A {Saccharomyces cerevisiae} SCOP: a.24.15.1 PDB: 1jra_A*
Probab=100.00 E-value=6e-49 Score=280.14 Aligned_cols=109 Identities=32% Similarity=0.716 Sum_probs=104.3
Q ss_pred CCCCCccccccchhHHHHHHhhhCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q psy513 20 NCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSLSQWLCWL 99 (129)
Q Consensus 20 ~cp~~~~~lG~a~W~llHtlaa~~p~~Pt~~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p~~v~sr~~l~~Wl~~~ 99 (129)
+||+++++||+|+|+||||||++||++|+.++++.++.|+.+|.+||||.+|+.||.++++++|++|+||+++++|||++
T Consensus 3 ~~~~~~~~lG~s~W~llHtlaa~~p~~pt~~~~~~l~~f~~~~~~fypC~~Ca~hF~~~~~~~p~~v~sr~~~~lWLw~~ 82 (117)
T 1jr8_A 3 GDDKVKKEVGRASWKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEKYPVQTSSRTAAAMWGCHI 82 (117)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHHHHHHHH
T ss_pred CCCcchhhccccHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhCCCCCChhcHHHhhccCCCCC
Q psy513 100 HNGVNEKLGKPLFDCTKVNERWRDGWSDG 128 (129)
Q Consensus 100 HN~VN~rLgKp~~~c~~~~~rw~~g~~~~ 128 (129)
||.||+|||||+|||+.|.|||++||+||
T Consensus 83 HN~VN~rL~kp~f~c~~~~er~~~g~~~~ 111 (117)
T 1jr8_A 83 HNKVNEYLKKDIYDCATILEDYDCGCSDS 111 (117)
T ss_dssp HHHHHHHTTCCCCCCTTHHHHTCCCC---
T ss_pred HHHHHHHhCCCCcCHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999997
No 4
>4e0i_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; flavin-linked sulfhydryl oxidase, MIA40, oxidation, mitochon intermembrane space; HET: FAD; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-47 Score=290.60 Aligned_cols=114 Identities=39% Similarity=0.847 Sum_probs=109.8
Q ss_pred ccCCCCCCCCCccccccchhHHHHHHhhhCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCCCCCCCHHHHH
Q psy513 14 QQHSPSNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSLS 93 (129)
Q Consensus 14 ~~~~~~~cp~~~~~lG~a~W~llHtlaa~~p~~Pt~~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p~~v~sr~~l~ 93 (129)
....+.+||+|+++||+++|++|||||++||++|+.++++.|+.||.+|..+|||.+|+.||.++++.+|+.++||++|+
T Consensus 76 ~~~~~~~~P~d~~elGp~~W~~LHTiA~~YP~~Pt~~~k~~~~~Fi~~l~~~lPC~~C~~hf~~~lk~~pp~l~SR~~l~ 155 (189)
T 4e0i_A 76 SRTYRKVDPPDVEQLGRSSWTLLHSVAASYPAQPTDQQKGEMKQFLNIFSHIYPCNWSAKDFEKYIRENAPQVESREELG 155 (189)
T ss_dssp CSSCBCCCCCCHHHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHSCCCCSSHHHHH
T ss_pred ccCCcCCCCCChhhcCcHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHCccccCCHHHHH
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHhhhCCCCCChhcHHHhhccCCCC
Q psy513 94 QWLCWLHNGVNEKLGKPLFDCTKVNERWRDGWSD 127 (129)
Q Consensus 94 ~Wl~~~HN~VN~rLgKp~~~c~~~~~rw~~g~~~ 127 (129)
+|||++||.||+|||||+|||+.+.|||++||+|
T Consensus 156 ~Wl~~~HN~VN~rLgKp~fdc~~~~erw~~G~~d 189 (189)
T 4e0i_A 156 RWMCEAHNKVNKKLRKPKFDCNFWEKRWKDGWDE 189 (189)
T ss_dssp HHHHHHHHHHHHHTTCCCCCGGGHHHHHTSCCC-
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999997
No 5
>4e0h_A Mitochondrial FAD-linked sulfhydryl oxidase ERV1; four-helix bundle, flavin-linked sulfhydryl oxidase, FAD BIN oxidation; HET: FAD; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.9e-47 Score=264.54 Aligned_cols=105 Identities=42% Similarity=0.968 Sum_probs=102.6
Q ss_pred CCccccccchhHHHHHHhhhCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhHH
Q psy513 23 LDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSLSQWLCWLHNG 102 (129)
Q Consensus 23 ~~~~~lG~a~W~llHtlaa~~p~~Pt~~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p~~v~sr~~l~~Wl~~~HN~ 102 (129)
.|+++|||++|++|||||++||++|+.+++..++.||.+|+.+|||.+||.||.++++++|+.++||++|++|||++||.
T Consensus 2 ~d~e~lGp~~W~~lHtia~~yP~~pt~~~k~~~~~fi~~l~~~lPC~~C~~hf~~~l~~~p~~~~sr~~l~~Wl~~~HN~ 81 (106)
T 4e0h_A 2 MDVEQLGRSSWTLLHSVAASYPAQPTDQQKGEMKQFLNIFSHIYPCNWCAKDFEKYIRENAPQVESREELGRWMCEAHNK 81 (106)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSCCCCSSHHHHHHHHHHHHHH
T ss_pred CCHHHccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHHHCCCccCCHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCChhcHHHhhccCCCC
Q psy513 103 VNEKLGKPLFDCTKVNERWRDGWSD 127 (129)
Q Consensus 103 VN~rLgKp~~~c~~~~~rw~~g~~~ 127 (129)
||+|||||+|||+.+.+||++||+|
T Consensus 82 VN~rLgKp~f~~~~~~~ry~~g~~d 106 (106)
T 4e0h_A 82 VNKKLRKPKFDCNFWEKRWKDGWDE 106 (106)
T ss_dssp HHHHTTCCCCCGGGHHHHHTSCCC-
T ss_pred HHHHcCCCCCCHHHHHHHHHhcCCC
Confidence 9999999999999999999999997
No 6
>3gwl_A P14, FAD-linked sulfhydryl oxidase; homodimer, five-helix bundle, cytoplasm, disulfide bond, flavoprotein, late protein; HET: FAD; 2.10A {African swine fever virus BA71V}
Probab=100.00 E-value=8.4e-43 Score=244.55 Aligned_cols=98 Identities=20% Similarity=0.427 Sum_probs=95.7
Q ss_pred cccccchhHHHHHHhhhCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhHHHHh
Q psy513 26 DQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSLSQWLCWLHNGVNE 105 (129)
Q Consensus 26 ~~lG~a~W~llHtlaa~~p~~Pt~~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p~~v~sr~~l~~Wl~~~HN~VN~ 105 (129)
.+|||++|++|||||++||++||.+++..++.||..|..+|||.+|+.||+++++++|+++.+++++++|||++||.||+
T Consensus 5 ~~~Gra~W~llHt~aa~yP~~Pt~~~~~~~~~~i~~f~~~yPC~~Ca~hf~~~~~~~p~~~~s~~~~~lWlc~~HN~VN~ 84 (106)
T 3gwl_A 5 LHWGPKYWRSLHLYAIFFSDAPSWKEKYEAIQWILNFIESLPCTRCQHHAFSYLTKNPLTLNNSEDFQYWTFAFHNNVNN 84 (106)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHSCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCccChHHHHHHHHHHHhHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCChhcHHHhhcc
Q psy513 106 KLGKPLFDCTKVNERWRD 123 (129)
Q Consensus 106 rLgKp~~~c~~~~~rw~~ 123 (129)
|||||+|||+++.|||+-
T Consensus 85 rLgKp~fdc~~~~e~y~~ 102 (106)
T 3gwl_A 85 RLNKKIISWSEYKNIYEQ 102 (106)
T ss_dssp HTTCCCCCHHHHHHHHTT
T ss_pred hhCCCCCCHHHHHHHHHH
Confidence 999999999999999985
No 7
>3gwn_A Probable FAD-linked sulfhydryl oxidase R596; five helix bundle, homodimer, disulfide bond, flavoprot oxidoreductase, virion; HET: FAD; 1.78A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=9.9e-43 Score=246.90 Aligned_cols=102 Identities=25% Similarity=0.516 Sum_probs=98.3
Q ss_pred CCCccccccchhHHHHHHhhhCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCC----CC-CCCHHHHHHHH
Q psy513 22 PLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRP----PA-TSSQSSLSQWL 96 (129)
Q Consensus 22 p~~~~~lG~a~W~llHtlaa~~p~~Pt~~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p----~~-v~sr~~l~~Wl 96 (129)
+.++++|||++|+||||||++||++|+.+++++|+.||.+|+++|||.+|+.||.++++++| ++ |+||+++++||
T Consensus 3 g~~p~~~Grs~W~llHt~aa~~p~~pt~~~~~~~~~fi~~~~~~yPC~~Ca~hf~~~~~~~p~~~~~~~v~sr~~~~~Wl 82 (114)
T 3gwn_A 3 GLITKIWGTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPCRLCRESYKKFITTGKTALTNEVLRNRHTLTKWF 82 (114)
T ss_dssp CBCHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHTTSGGGCCCGGGGSSHHHHHHHH
T ss_pred CCchhhhcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCcCCccccCCHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999 88 99999999999
Q ss_pred HHHhHHHHhhhCCCC-CChhcHHHhhcc
Q psy513 97 CWLHNGVNEKLGKPL-FDCTKVNERWRD 123 (129)
Q Consensus 97 ~~~HN~VN~rLgKp~-~~c~~~~~rw~~ 123 (129)
|++||.||+|||||+ ++|++|.|||+.
T Consensus 83 c~~HN~VN~rLgKp~~~~~~~v~ery~~ 110 (114)
T 3gwn_A 83 YDVHNAVNNKLEVDYGLSYEDVVNKYES 110 (114)
T ss_dssp HHHHHHHHHHTTCCCCCCHHHHHHHHHT
T ss_pred HHHHhHHHHHhCCCCcCCHHHHHHHHHH
Confidence 999999999999996 789999999974
No 8
>3td7_A FAD-linked sulfhydryl oxidase R596; four helix-bundle, orfan domain, oxidoreductase; HET: FAD; 2.21A {Acanthamoeba polyphaga mimivirus}
Probab=99.97 E-value=2.6e-32 Score=218.45 Aligned_cols=105 Identities=26% Similarity=0.518 Sum_probs=94.6
Q ss_pred CCccccccchhHHHHHHhhhCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCCC-----CCCCHHHHHHHHH
Q psy513 23 LDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPP-----ATSSQSSLSQWLC 97 (129)
Q Consensus 23 ~~~~~lG~a~W~llHtlaa~~p~~Pt~~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p~-----~v~sr~~l~~Wl~ 97 (129)
.....|||++|++|||||++||++|+.++++.++.||.+|+.+|||.+|+.||.++++++|+ .++||++|+.|+|
T Consensus 38 M~TkVWGPstW~fLHTIAa~YPenPT~~dKk~y~~FI~nL~~vLPC~~Cr~HF~k~Lkk~Pv~~~~p~L~SRdsLskWL~ 117 (295)
T 3td7_A 38 LITKIWGTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPCRLCRESYKKFITTGKTALTNEVLRNRHTLTKWFY 117 (295)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHTTSGGGCCCTTGGGSHHHHHHHHH
T ss_pred CccCcCcHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccccccccccCCHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999998773 4799999999999
Q ss_pred HHhHHHHhhhCCCC-CChhcH---HHhhccCCCC
Q psy513 98 WLHNGVNEKLGKPL-FDCTKV---NERWRDGWSD 127 (129)
Q Consensus 98 ~~HN~VN~rLgKp~-~~c~~~---~~rw~~g~~~ 127 (129)
++||.||++||||. +.++++ .|.|+++|.+
T Consensus 118 ~iHN~VNkrLGKP~~lSYedv~kkYE~yrakC~k 151 (295)
T 3td7_A 118 DVHNAVNNKLEVDYGLSYEDVVNKYESFRAKCGK 151 (295)
T ss_dssp HHHHHHHHHHTCCCCCCHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhccCCCC
Confidence 99999999999996 666554 5666788765
No 9
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=99.93 E-value=4.4e-27 Score=200.74 Aligned_cols=104 Identities=18% Similarity=0.286 Sum_probs=88.0
Q ss_pred ccCCCCCCCCCcccccc---chhHHHHHHhhhCCCCCCH------HHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCCC
Q psy513 14 QQHSPSNCPLDKDQLGQ---HTWGFLHTVAAYYPDKPSS------DQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPP 84 (129)
Q Consensus 14 ~~~~~~~cp~~~~~lG~---a~W~llHtlaa~~p~~Pt~------~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p~ 84 (129)
....-.+|-.+...+++ ++|+|||||||+||++|+. +++..+..|...+..||||.+|+.||.++++++++
T Consensus 358 ~~~~w~~C~gs~~~~rg~~C~lW~l~Htltv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ff~C~~Ca~hF~~~~~~~~~ 437 (519)
T 3t58_A 358 EKVNWVGCQGSEPHFRGFPCSLWVLFHFLTVQANRYSEAHPQEPADGQEVLQAMRSYVQFFFGCRDSADHFEQMAAASMH 437 (519)
T ss_dssp SSCCCSTTBCSSTTSBSHHHHHHHHHHHHHHHHHHHHHTSTTSCCCSCHHHHHHHHHHHHHCSBHHHHHHHHHHHHHHGG
T ss_pred CCCCcccCCCCCcccCCcCcHHHHHHHHHHccCccCCccccccccchHHHHHHHHHHHHHCCCchHHHHHHHHHHhhCCC
Confidence 34456899999888776 9999999999999998754 45566666666677889999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhHHHHhhh-----CCCCCChhcH
Q psy513 85 ATSSQSSLSQWLCWLHNGVNEKL-----GKPLFDCTKV 117 (129)
Q Consensus 85 ~v~sr~~l~~Wl~~~HN~VN~rL-----gKp~~~c~~~ 117 (129)
+|+||+++++|||++||.||+|| ++|.|++..+
T Consensus 438 ~v~s~~~~~~Wlw~~HN~VN~rL~~~~~~dp~f~k~q~ 475 (519)
T 3t58_A 438 QVRSPSNAILWLWTSHNRVNARLSGALSEDPHFPKVQW 475 (519)
T ss_dssp GCCSHHHHHHHHHHHHHHHHHHHTTCTTCCTTSCCCSS
T ss_pred cCCCHHHHHHHHHHhhCHHHhhcCCCCCCCCCCCccCC
Confidence 99999999999999999999999 4566665544
No 10
>3llk_A Sulfhydryl oxidase 1; disulfide, flavin adenine dinucleotide, alternative splicing, FAD, flavoprotein, glycoprotein, GOLG apparatus, membrane; HET: FAD FLC; 2.00A {Homo sapiens} PDB: 3lli_A*
Probab=99.92 E-value=3.8e-25 Score=175.69 Aligned_cols=101 Identities=17% Similarity=0.338 Sum_probs=83.3
Q ss_pred ccCCCCCCCCCcccccc---chhHHHHHHhhhCCCCCCH---------HHHHHHHHHHHHhhhhcCChhHHHHHHHHHHh
Q psy513 14 QQHSPSNCPLDKDQLGQ---HTWGFLHTVAAYYPDKPSS---------DQQKDMSTFFTLLSKFYPCEVCATDLAEQLKV 81 (129)
Q Consensus 14 ~~~~~~~cp~~~~~lG~---a~W~llHtlaa~~p~~Pt~---------~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~ 81 (129)
+...-.+|-.+...+++ ++|+|||+||+++++.|.. +..++|+.||.. ||||.+|+.||++++++
T Consensus 101 ~~~~WvgC~GS~p~~RGy~CgLW~LFH~LTV~a~~~~~~~~~~~~~~~~vl~ai~~fv~~---FypC~~Ca~hF~~~~~~ 177 (261)
T 3llk_A 101 KKVNWIGCQGSEPHFRGFPCSLWVLFHFLTVQAARQNVDHSQEAAKAKEVLPAIRGYVHY---FFGCRDCASHFEQMAAA 177 (261)
T ss_dssp SSCCCSTTCCSSTTSSSHHHHHHHHHHHHHHHHHCC---------CGGGHHHHHHHHHHH---HCSCHHHHHHHHHHHHH
T ss_pred CCCcccccCCCCCccCCcCcHHHHHHHHHHhhhhcccccccccccCHHHHHHHHHHHHHH---cCCcHHHHHHHHHHHhh
Confidence 34466899999888776 9999999999998876532 345677788775 59999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhHHHHhhhC-----CCCCChhcH
Q psy513 82 RPPATSSQSSLSQWLCWLHNGVNEKLG-----KPLFDCTKV 117 (129)
Q Consensus 82 ~p~~v~sr~~l~~Wl~~~HN~VN~rLg-----Kp~~~c~~~ 117 (129)
+|++|+|++++++|||++||.||+||+ .|.|++..+
T Consensus 178 ~~~~v~sr~~~~lWLw~~HN~VN~rLag~~seDP~fpK~qw 218 (261)
T 3llk_A 178 SMHRVGSPNAAVLWLWSSHNRVNARLAGAPSEDPQFPKVQW 218 (261)
T ss_dssp HGGGCCSHHHHHHHHHHHHHHHHHHHTTCTTSCTTSCCCSS
T ss_pred CCCccCCHHHHHHHHHHhcCHHhhhcCCCCCCCCCCCccCC
Confidence 999999999999999999999999994 466665544
No 11
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*
Probab=99.89 E-value=1.9e-24 Score=183.32 Aligned_cols=93 Identities=19% Similarity=0.323 Sum_probs=77.2
Q ss_pred CCCCCCCCcccccc---chhHHHHHHhhhCCCCCCHHHHHHHHHHHHHhhhhcCChhHHHHHHHHHHhCCCCCCCHHHHH
Q psy513 17 SPSNCPLDKDQLGQ---HTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSLS 93 (129)
Q Consensus 17 ~~~~cp~~~~~lG~---a~W~llHtlaa~~p~~Pt~~~~~~~~~fi~~~~~~~PC~~Cr~hf~~~~~~~p~~v~sr~~l~ 93 (129)
.-.+|-.+...+++ ++|+||||||++||+ ++..+..|+..|.+||||.+|+.||.+++ ++++++++
T Consensus 286 ~w~~C~gs~~~~rg~~CslW~l~Htlt~~~~~-----~~~~~~~~~~~~~~ffpC~~Ca~hF~~~~------~~s~~~~~ 354 (470)
T 3qcp_A 286 RWRTCRGSSPQYRGFPCGMWLLLHALTVNTPA-----DRNVLEVIQNYIRYFFSCKECRDHFIQFN------FSPNEDPV 354 (470)
T ss_dssp CCSTTCCSSTTSSSHHHHHHHHHHHHHHHCCT-----TCCHHHHHHHHHHHHCSCHHHHHHHTTCC------CCSSSCHH
T ss_pred cccccCCCCCccCCcCchHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHccCcHHHHHHHHHHh------ccCHHHHH
Confidence 35679888887776 999999999999998 24556666666667899999999999865 78999999
Q ss_pred HHHHHHhHHHHhhhCC------CCCChhcHHHh
Q psy513 94 QWLCWLHNGVNEKLGK------PLFDCTKVNER 120 (129)
Q Consensus 94 ~Wl~~~HN~VN~rLgK------p~~~c~~~~~r 120 (129)
+|||++||.||+||+| |.|+|..+.-.
T Consensus 355 lWlw~~HN~VN~rL~~~~~~~dp~fpk~~~P~~ 387 (470)
T 3qcp_A 355 LQLWRAHNNVNARLANVKDGADPLVPKRQFPTL 387 (470)
T ss_dssp HHHHHHHHHHHHHHTTCCTTSCTTSCCCCSSCT
T ss_pred HHHHHHhCHHHHhcCCCCCCCCCCCCccCCCCc
Confidence 9999999999999997 66777655433
No 12
>3p0k_A Sulfhydryl oxidase; 4-helix bundle, 5-helix bundle, flavin adenine dinucleotide, oxidoreductase, viral protein; HET: FAD; 1.47A {Autographa californica nucleopolyhedro} PDB: 3qzy_A* 3ust_A*
Probab=75.44 E-value=4.6 Score=31.73 Aligned_cols=47 Identities=23% Similarity=0.429 Sum_probs=34.5
Q ss_pred chhHHHHHHhhhC------CCCCCH----HHHHHHHHHHHHhhhhcCChhHHHHHHH
Q psy513 31 HTWGFLHTVAAYY------PDKPSS----DQQKDMSTFFTLLSKFYPCEVCATDLAE 77 (129)
Q Consensus 31 a~W~llHtlaa~~------p~~Pt~----~~~~~~~~fi~~~~~~~PC~~Cr~hf~~ 77 (129)
-.|=.+|.|+.-. =++-+. ...+.++..+.++-..+-|.-||+|+..
T Consensus 109 TIWD~IHfL~li~DDmV~nR~k~~~d~v~~~l~n~K~lfYNiF~~L~C~mC~~HYl~ 165 (266)
T 3p0k_A 109 TIWDTMHFLSLIIDDMVYTRDKSSLDFVMQQLKTMKVLFYNVFFILQCAMCRDHYMN 165 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHCCCCSSCCHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHhHhhccHHHHHHHHHHHHHHHhhHhheeCChHHhHHHEe
Confidence 4799999998532 223333 3456788888887777899999999876
No 13
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=50.36 E-value=4.7 Score=18.26 Aligned_cols=12 Identities=33% Similarity=0.963 Sum_probs=10.3
Q ss_pred cCChhHHHHHHH
Q psy513 66 YPCEVCATDLAE 77 (129)
Q Consensus 66 ~PC~~Cr~hf~~ 77 (129)
|.|..|...|..
T Consensus 3 ~~C~~C~k~f~~ 14 (26)
T 2lvu_A 3 YVCERCGKRFVQ 14 (26)
Confidence 789999998875
No 14
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A
Probab=37.81 E-value=19 Score=26.88 Aligned_cols=19 Identities=37% Similarity=0.635 Sum_probs=16.9
Q ss_pred cCChhHHHHHHHHHHhCCC
Q psy513 66 YPCEVCATDLAEQLKVRPP 84 (129)
Q Consensus 66 ~PC~~Cr~hf~~~~~~~p~ 84 (129)
=||.+|+....+++.+++.
T Consensus 95 SPC~~CA~~va~FL~~~~~ 113 (190)
T 3vow_A 95 SPCPDCAGEVAEFLARHSN 113 (190)
T ss_dssp CCCHHHHHHHHHHHHHCTT
T ss_pred CchHHHHHHHHHHHHhCCC
Confidence 4999999999999998873
No 15
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=36.91 E-value=17 Score=27.41 Aligned_cols=19 Identities=26% Similarity=0.571 Sum_probs=16.8
Q ss_pred cCChhHHHHHHHHHHhCCC
Q psy513 66 YPCEVCATDLAEQLKVRPP 84 (129)
Q Consensus 66 ~PC~~Cr~hf~~~~~~~p~ 84 (129)
=||.+|+....+++..+|.
T Consensus 109 SPC~~CA~~v~~FL~~~~~ 127 (203)
T 3v4k_A 109 SPCFSCAQEMAKFISKNKH 127 (203)
T ss_pred CChHHHHHHHHHHHhhCCC
Confidence 4999999999999988873
No 16
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=42.30 E-value=7.6 Score=17.86 Aligned_cols=13 Identities=15% Similarity=0.677 Sum_probs=10.5
Q ss_pred cCChhHHHHHHHH
Q psy513 66 YPCEVCATDLAEQ 78 (129)
Q Consensus 66 ~PC~~Cr~hf~~~ 78 (129)
|.|..|...|...
T Consensus 3 ~~C~~C~k~f~~~ 15 (29)
T 2lvt_A 3 CQCVMCGKAFTQA 15 (29)
Confidence 7799999988653
No 17
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=39.82 E-value=8.8 Score=17.58 Aligned_cols=14 Identities=29% Similarity=0.664 Sum_probs=10.9
Q ss_pred hcCChhHHHHHHHH
Q psy513 65 FYPCEVCATDLAEQ 78 (129)
Q Consensus 65 ~~PC~~Cr~hf~~~ 78 (129)
-|.|..|...|...
T Consensus 3 ~~~C~~C~k~f~~~ 16 (30)
T 2lvr_A 3 PYVCIHCQRQFADP 16 (30)
Confidence 37899999988653
No 18
>2ajj_A NS5A, nonstructural protein 5A; IN-plane membrane anchor domain, amphipathic alpha-helix, membrane protein; NMR {Synthetic} PDB: 2ajm_A 2ajn_A 2ajo_A
Probab=24.13 E-value=24 Score=18.38 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=12.7
Q ss_pred HHHHHHHhHHHHhhhCC
Q psy513 93 SQWLCWLHNGVNEKLGK 109 (129)
Q Consensus 93 ~~Wl~~~HN~VN~rLgK 109 (129)
..-++.+|+.+|..+.|
T Consensus 6 LdLl~~lh~~~~~~ikk 22 (28)
T 2ajj_A 6 LDLIYSLHKQINRGLKK 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34578999999987643
No 19
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=23.74 E-value=11 Score=18.18 Aligned_cols=14 Identities=14% Similarity=0.619 Sum_probs=11.4
Q ss_pred cCChhHHHHHHHHH
Q psy513 66 YPCEVCATDLAEQL 79 (129)
Q Consensus 66 ~PC~~Cr~hf~~~~ 79 (129)
|.|..|...|....
T Consensus 3 ~~C~~C~k~f~~~~ 16 (32)
T 2kfq_A 3 FACPACPKRFMRSD 16 (32)
T ss_dssp SSSSSSCTTHHHHH
T ss_pred CCCCCCCcccCCHH
Confidence 78999999987644
Done!