RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy513
(129 letters)
>gnl|CDD|227387 COG5054, ERV1, Mitochondrial sulfhydryl oxidase involved in the
biogenesis of cytosolic Fe/S proteins [Posttranslational
modification, protein turnover, chaperones].
Length = 181
Score = 132 bits (333), Expect = 3e-40
Identities = 50/126 (39%), Positives = 67/126 (53%)
Query: 2 KQTGSASGVDSTQQHSPSNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTL 61
K G S + D ++LG+ +W LHTVAA YP +P+ Q+ D+ +F L
Sbjct: 56 KNDGEGKERKPITMMSTKHDNPDVEELGRSSWTLLHTVAANYPARPTPQQRDDLRSFLFL 115
Query: 62 LSKFYPCEVCATDLAEQLKVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERW 121
S YPC C+ + L V PP SS+ + + W C +HN VNEKLGKP FDC NER+
Sbjct: 116 FSITYPCGECSKHFQKLLDVYPPQVSSREAATTWACEVHNKVNEKLGKPKFDCDTWNERY 175
Query: 122 RDGWSD 127
G
Sbjct: 176 DCGCDT 181
>gnl|CDD|218261 pfam04777, Evr1_Alr, Erv1 / Alr family. Biogenesis of Fe/S
clusters involves a number of essential mitochondrial
proteins. Erv1p of Saccharomyces cerevisiae mitochondria
is required for the maturation of Fe/S proteins in the
cytosol. The ALR (augmenter of liver regeneration)
represents a mammalian orthologue of yeast Erv1p. Both
Erv1p and full-length ALR are located in the
mitochondrial intermembrane an d it thought to operate
downstream of the mitochondrial ABC transporter.
Length = 95
Score = 117 bits (296), Expect = 1e-35
Identities = 44/94 (46%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 31 HTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQS 90
W LHT+AA YPD P+ ++++ + +F S FYPCE CA + L PP SS+
Sbjct: 2 SLWTLLHTLAARYPDNPTPEEKEVLKSFLGSFSHFYPCEECAEHFQKILAKNPPQVSSRD 61
Query: 91 SLSQWLCWLHNGVNEKLGKPLF-DCTKVNERWRD 123
LS WLC HN VN +LGKPLF KV ER+ D
Sbjct: 62 DLSLWLCEAHNEVNARLGKPLFCSDPKVKERYPD 95
>gnl|CDD|197713 smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon
Repressor.
Length = 66
Score = 28.7 bits (65), Expect = 0.21
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 69 EVCATDLAEQLKVRPPATSSQSSLSQWLCWLHN 101
E+C +LAE L + SQS++S L L
Sbjct: 10 ELCVCELAEILGL------SQSTVSHHLKKLRE 36
>gnl|CDD|237851 PRK14894, PRK14894, glycyl-tRNA synthetase; Provisional.
Length = 539
Score = 30.0 bits (67), Expect = 0.34
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 96 LCWLHNGVNEKLGKPLFDCTKVNERWR 122
L W ++G E PL DC RWR
Sbjct: 73 LVWKYSGHEETFNDPLVDCRDCKMRWR 99
>gnl|CDD|226298 COG3775, GatC, Phosphotransferase system, galactitol-specific IIC
component [Carbohydrate transport and metabolism].
Length = 446
Score = 29.6 bits (67), Expect = 0.40
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 55 MSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQ-SSLSQ---WLCWL 99
+ F + ++ P T+LA+ + S+Q SSLS WL
Sbjct: 366 IPIFLWIATQIAPF---ITELAKNVGAFFAGGSAQVSSLSTGGNPFGWL 411
>gnl|CDD|238042 cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and
similar prokaryotic, metal regulated homodimeric
repressors. ARSR subfamily of helix-turn-helix
bacterial transcription regulatory proteins (winged
helix topology). Includes several proteins that appear
to dissociate from DNA in the presence of metal ions.
Length = 78
Score = 27.6 bits (62), Expect = 0.77
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 69 EVCATDLAEQLKVRPPATSSQ 89
+ ++LAE+L + S
Sbjct: 20 PLTVSELAERLGLSQSTVSRH 40
>gnl|CDD|223656 COG0583, LysR, Transcriptional regulator [Transcription].
Length = 297
Score = 28.0 bits (62), Expect = 1.4
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 10/38 (26%)
Query: 76 AEQLKVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFD 113
AE+L + SQS++S+ + L E+LG PLF+
Sbjct: 22 AERLGL------SQSAVSRQIKRLE----EELGVPLFE 49
>gnl|CDD|216248 pfam01022, HTH_5, Bacterial regulatory protein, arsR family.
Members of this family contains a DNA binding
'helix-turn-helix' motif. This family includes other
proteins which are not included in the Prosite
definition.
Length = 47
Score = 25.2 bits (56), Expect = 3.0
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 69 EVCATDLAEQLKVRPPATSSQSSLSQWLCWLHN 101
E+C +LAE L + SQS++S L L
Sbjct: 15 ELCVCELAEILGL------SQSTVSHHLKKLRE 41
>gnl|CDD|224425 COG1508, RpoN, DNA-directed RNA polymerase specialized sigma
subunit, sigma54 homolog [Transcription].
Length = 444
Score = 25.8 bits (57), Expect = 7.8
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 60 TLLSKFYPCEVCATDLAE----QLKVRPPATSSQSSLSQWLCWL 99
+ P V A DL E QL+ RP + + L L
Sbjct: 150 ARIQSLDPAGVGARDLRECLLLQLERRPLDDPALEIVIDHLELL 193
>gnl|CDD|237109 PRK12469, PRK12469, RNA polymerase factor sigma-54; Provisional.
Length = 481
Score = 25.9 bits (57), Expect = 8.6
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 52 QKDMSTFFTLLSKFYPCEVCATDLAE----QLKVRPPATSSQS 90
++++ L+ P V A DL+E QL P T +
Sbjct: 178 EQELEVALRLVQSLDPPGVAARDLSECLLLQLDALPADTPALE 220
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.128 0.419
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,047,749
Number of extensions: 462829
Number of successful extensions: 262
Number of sequences better than 10.0: 1
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 12
Length of query: 129
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 43
Effective length of database: 7,123,158
Effective search space: 306295794
Effective search space used: 306295794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.1 bits)