RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy513
(129 letters)
>3mbg_A FAD-linked sulfhydryl oxidase ALR; flavin, flavoprotein, GFER; HET:
FAD; 1.85A {Homo sapiens} PDB: 3r7c_A*
Length = 139
Score = 136 bits (344), Expect = 8e-43
Identities = 67/125 (53%), Positives = 87/125 (69%)
Query: 5 GSASGVDSTQQHSPSNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSK 64
S +CP D+++LG+H+W LHT+AAYYPD P+ +QQ+DM+ F L SK
Sbjct: 13 ASMRTQQKRDTKFREDCPPDREELGRHSWAVLHTLAAYYPDLPTPEQQQDMAQFIHLFSK 72
Query: 65 FYPCEVCATDLAEQLKVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDG 124
FYPCE CA DL ++L P T ++++ +QWLC LHN VN KLGKP FDC+KV+ERWRDG
Sbjct: 73 FYPCEECAEDLRKRLARNHPDTRTRAAFTQWLCHLHNEVNRKLGKPDFDCSKVDERWRDG 132
Query: 125 WSDGS 129
W DGS
Sbjct: 133 WKDGS 137
>1oqc_A ALR, augmenter of liver regeneration; sulfhydryl oxidase,
helix-turn-HELI oxidoreductase; HET: FAD; 1.80A {Rattus
norvegicus} SCOP: a.24.15.1 PDB: 3o55_A*
Length = 125
Score = 134 bits (339), Expect = 3e-42
Identities = 66/113 (58%), Positives = 87/113 (76%)
Query: 17 SPSNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLA 76
+CP D+++LG++TW FLHT+AAYYPD P+ +QQ+DM+ F + SKFYPCE CA D+
Sbjct: 11 FREDCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIR 70
Query: 77 EQLKVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
+++ P TS++ S SQWLC LHN VN KLGKP FDC++V+ERWRDGW DGS
Sbjct: 71 KRIDRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGS 123
>1jr8_A ERV2 protein, mitochondrial; FAD, sulfhydryl oxidase, helical
bundle, CXXC, oxidoreductase; HET: FAD; 1.50A
{Saccharomyces cerevisiae} SCOP: a.24.15.1 PDB: 1jra_A*
Length = 117
Score = 130 bits (329), Expect = 8e-41
Identities = 35/108 (32%), Positives = 64/108 (59%)
Query: 22 PLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKV 81
K ++G+ +W + HT+ A +PD+P+ ++++ + TF L ++ YPC C+ + ++
Sbjct: 5 DKVKKEVGRASWKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEK 64
Query: 82 RPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
P TSS+++ + W C +HN VNE L K ++DC + E + G SD
Sbjct: 65 YPVQTSSRTAAAMWGCHIHNKVNEYLKKDIYDCATILEDYDCGCSDSD 112
>2hj3_A Sulfhydryl oxidase ERV1P; four-helix bundle, flavin adenine
dinucleotide, oxidoreductase; HET: FAD; 2.50A
{Arabidopsis thaliana}
Length = 125
Score = 119 bits (300), Expect = 2e-36
Identities = 51/114 (44%), Positives = 67/114 (58%), Gaps = 1/114 (0%)
Query: 17 SPSNCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLA 76
S P+ K+ LG+ TW FLHT+AA YP+KP+ Q+KD+ T+LS+ YPC CA
Sbjct: 2 SHMTGPVTKEDLGRATWTFLHTLAAQYPEKPTRQQKKDVKELMTILSRMYPCRECADHFK 61
Query: 77 EQLKVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERW-RDGWSDGS 129
E L+ P SQ SQWLC +HN VN LGK +F C +V+ RW + S
Sbjct: 62 EILRSNPAQAGSQEEFSQWLCHVHNTVNRSLGKLVFPCERVDARWGKLECEQKS 115
>3gwl_A P14, FAD-linked sulfhydryl oxidase; homodimer, five-helix bundle,
cytoplasm, disulfide bond, flavoprotein, late protein;
HET: FAD; 2.10A {African swine fever virus BA71V}
Length = 106
Score = 105 bits (263), Expect = 5e-31
Identities = 20/96 (20%), Positives = 34/96 (35%)
Query: 29 GQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSS 88
G W LH A ++ D PS ++ + + + PC C L P ++
Sbjct: 8 GPKYWRSLHLYAIFFSDAPSWKEKYEAIQWILNFIESLPCTRCQHHAFSYLTKNPLTLNN 67
Query: 89 QSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDG 124
W HN VN +L K + ++ +
Sbjct: 68 SEDFQYWTFAFHNNVNNRLNKKIISWSEYKNIYEQS 103
>3gwn_A Probable FAD-linked sulfhydryl oxidase R596; five helix bundle,
homodimer, disulfide bond, flavoprot oxidoreductase,
virion; HET: FAD; 1.78A {Acanthamoeba polyphaga
mimivirus}
Length = 114
Score = 95.2 bits (236), Expect = 1e-26
Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 6/106 (5%)
Query: 23 LDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLK-- 80
L G W F H V YP P+SD ++ +F L PC +C + +
Sbjct: 4 LITKIWGTAGWTFNHAVTFGYPLNPTSDDKRRYKNYFISLGDVLPCRLCRESYKKFITTG 63
Query: 81 ---VRPPATSSQSSLSQWLCWLHNGVNEKLGKP-LFDCTKVNERWR 122
+ ++ +L++W +HN VN KL V ++
Sbjct: 64 KTALTNEVLRNRHTLTKWFYDVHNAVNNKLEVDYGLSYEDVVNKYE 109
>3llk_A Sulfhydryl oxidase 1; disulfide, flavin adenine dinucleotide,
alternative splicing, FAD, flavoprotein, glycoprotein,
GOLG apparatus, membrane; HET: FAD FLC; 2.00A {Homo
sapiens} PDB: 3lli_A*
Length = 261
Score = 82.1 bits (202), Expect = 3e-20
Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 7/97 (7%)
Query: 32 TWGFLHTVAAYYPDKPSSDQQKD------MSTFFTLLSKFYPCEVCATDLAEQLKVRPPA 85
W H + + Q+ + + F+ C CA+ +
Sbjct: 122 LWVLFHFLTVQAARQNVDHSQEAAKAKEVLPAIRGYVHYFFGCRDCASHFEQMAAASMHR 181
Query: 86 TSSQSSLSQWLCWLHNGVNEKL-GKPLFDCTKVNERW 121
S ++ WL HN VN +L G P D +W
Sbjct: 182 VGSPNAAVLWLWSSHNRVNARLAGAPSEDPQFPKVQW 218
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN
binding, transcription regulation; 2.00A {Bacillus
anthracis}
Length = 99
Score = 32.6 bits (75), Expect = 0.008
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 69 EVCATDLAEQLKVRPPATSSQSSLSQWLCWLHNGV 103
+ T + + LK+ QS++SQ LC + V
Sbjct: 41 ALNVTQIIQILKL------PQSTVSQHLCKMRGKV 69
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.014
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 17/65 (26%)
Query: 35 FL-----HTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQ 89
+L H +AA + + L+ + A + RP S
Sbjct: 95 YLEGNDIHALAAKLL----QENDTTLVKTKELIKNYI--------TARIMAKRPFDKKSN 142
Query: 90 SSLSQ 94
S+L +
Sbjct: 143 SALFR 147
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 31.5 bits (70), Expect = 0.066
Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 6/81 (7%)
Query: 33 WGFLHTV---AAYYPDKPSSDQQKDMSTFFTLLS---KFYPCEVCATDLAEQLKVRPPAT 86
W H + A Y + + + S F+ C A +
Sbjct: 380 WVLFHFLTVQANRYSEAHPQEPADGQEVLQAMRSYVQFFFGCRDSADHFEQMAAASMHQV 439
Query: 87 SSQSSLSQWLCWLHNGVNEKL 107
S S+ WL HN VN +L
Sbjct: 440 RSPSNAILWLWTSHNRVNARL 460
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation,
winged HTH protein, DNA binding, transcription
repressor; 1.70A {Synechococcus elongatus pcc 7942}
SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Length = 122
Score = 30.1 bits (68), Expect = 0.11
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 36 LHTVAAYYPDKPSSDQQKDMSTFF---------TLLSKFYPCEVCATDLAEQLKVRPPAT 86
H A + + + ++ FF LLS E+C DLA+ + V A
Sbjct: 17 THAAIASELQAIAPEVAQSLAEFFAVLADPNRLRLLSLLARSELCVGDLAQAIGVSESAV 76
Query: 87 SSQ 89
S Q
Sbjct: 77 SHQ 79
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional
regulation, winged HTH protein, transcription
repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5
PDB: 1r1v_A 2kjb_A 2kjc_A
Length = 106
Score = 29.2 bits (66), Expect = 0.15
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 19/60 (31%)
Query: 46 KPSSDQQKDMSTFFTLLSKFYP-----------CEVCATDLAEQLKVRPPATSSQSSLSQ 94
+ ++D + ++ F L E ++ QL + SQS++S
Sbjct: 7 EINTDTLERVTEIFKALGD--YNRIRIMELLSVSEASVGHISHQLNL------SQSNVSH 58
>3jth_A Transcription activator HLYU; transcription factor, RTXA,
DNA-binding, transcription regulation; 2.00A {Vibrio
vulnificus}
Length = 98
Score = 29.1 bits (66), Expect = 0.16
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Query: 69 EVCATDLAEQLKVRPPATSSQSSLSQWLCWLHN 101
E+ +L +L++ SQS+LSQ L WL
Sbjct: 36 ELSVGELCAKLQL------SQSALSQHLAWLRR 62
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif,
winged-helix fold, transcriptional R DNA binding,
transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Length = 102
Score = 27.6 bits (62), Expect = 0.59
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 6/33 (18%)
Query: 69 EVCATDLAEQLKVRPPATSSQSSLSQWLCWLHN 101
E +L +Q+ + Q +LSQ L L
Sbjct: 36 EFSVGELEQQIGI------GQPTLSQQLGVLRE 62
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium,
transcriptional repressor, solution structure, STRU
genomics; NMR {Mycobacterium tuberculosis}
Length = 118
Score = 27.7 bits (62), Expect = 0.62
Identities = 5/26 (19%), Positives = 10/26 (38%), Gaps = 6/26 (23%)
Query: 69 EVCATDLAEQLKVRPPATSSQSSLSQ 94
LA L + ++S++S
Sbjct: 34 VCYPGQLAAHLGL------TRSNVSN 53
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer,
NI(II) binding protein, DNA binding Pro transcription
regulator; NMR {Mycobacterium tuberculosis}
Length = 119
Score = 27.7 bits (62), Expect = 0.62
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 69 EVCATDLAEQLKVRPPATSSQ 89
+ TDLAE + + A S Q
Sbjct: 45 PLPVTDLAEAIGMEQSAVSHQ 65
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural
genomics, DNA binding protein; 2.50A {Pyrococcus
horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Length = 192
Score = 27.8 bits (61), Expect = 1.00
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 69 EVCATDLAEQLKVRPPATS 87
E+ + L+E L P
Sbjct: 33 EMTISQLSEILGKTPQTIY 51
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD,
SOFT metal ION resistance, ARSR/SM family, DNA binding
protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5
PDB: 3f72_A
Length = 122
Score = 27.3 bits (61), Expect = 1.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 69 EVCATDLAEQLKVRPPATSSQ 89
E+C D+A L V S
Sbjct: 56 ELCVCDIANILGVTIANASHH 76
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase,
ATP-binding, folate biosynthesis, ligase,
multifunctional enzyme; HET: KCX PD8 ADP; 1.82A
{Escherichia coli} PDB: 1w7k_A*
Length = 422
Score = 26.7 bits (60), Expect = 2.1
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 83 PPATSSQSSLSQWLCWLHN 101
+ S L+ WL +L N
Sbjct: 4 KRTPQAASPLASWLSYLEN 22
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 26.9 bits (58), Expect = 2.2
Identities = 13/75 (17%), Positives = 22/75 (29%), Gaps = 11/75 (14%)
Query: 33 WGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPATSSQSSL 92
W LH + + + + + F+ C+ C + S
Sbjct: 305 WLLLHALTVN-----TPADRNVLEVIQNYIRYFFSCKECRDHFIQ------FNFSPNEDP 353
Query: 93 SQWLCWLHNGVNEKL 107
L HN VN +L
Sbjct: 354 VLQLWRAHNNVNARL 368
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family);
NESG, DNA-binding, transcription regulation, WHTH,
homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Length = 108
Score = 26.1 bits (58), Expect = 2.3
Identities = 5/33 (15%), Positives = 11/33 (33%), Gaps = 6/33 (18%)
Query: 69 EVCATDLAEQLKVRPPATSSQSSLSQWLCWLHN 101
E +A + + ++ S L L +
Sbjct: 38 ERAVEAIATATGM------NLTTASANLQALKS 64
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding
transcriptional regulator, structural genomics, MCSG;
2.00A {Escherichia coli K12}
Length = 99
Score = 25.7 bits (57), Expect = 2.8
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 6/33 (18%)
Query: 69 EVCATDLAEQLKVRPPATSSQSSLSQWLCWLHN 101
A +L + S S+ SQ L + +
Sbjct: 38 GTSAGELTRITGL------SASATSQHLARMRD 64
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription;
2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Length = 214
Score = 26.3 bits (58), Expect = 3.0
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 69 EVCATDLAEQLKVRPPATS 87
++ ++A+ ++V PPA +
Sbjct: 20 KITNKEIAQLMQVSPPAVT 38
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton,
M phosphoprotein, cell adhesion, structural protein;
1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Length = 371
Score = 26.4 bits (58), Expect = 3.6
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 44 PDKPSSDQQKDMSTFFTLLSKFYPCEV 70
+ +Q + L KF+ +
Sbjct: 147 HGRTLREQGVEEHETLLLRRKFFYSDQ 173
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation,
antiviral protein-viral P complex; 2.01A {Homo sapiens}
PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Length = 159
Score = 25.3 bits (55), Expect = 6.3
Identities = 9/55 (16%), Positives = 18/55 (32%)
Query: 60 TLLSKFYPCEVCATDLAEQLKVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDC 114
L + + ++ +LK + + Q L +GV + PL
Sbjct: 9 MLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ 63
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A*
3pyz_A* 3qcz_A*
Length = 437
Score = 25.6 bits (57), Expect = 6.3
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 84 PATSSQSSLSQWLCWLHN 101
+ S L+ WLC+L +
Sbjct: 8 QTPQATSPLAAWLCYLEH 25
>2i8d_A Uncharacterized conserved protein of COG5646; ZP_00384875.1,
structural genomics, PSI-2, protein structure
initiative; HET: MSE UNL; 1.69A {Lactobacillus casei}
SCOP: d.198.4.1
Length = 123
Score = 24.9 bits (54), Expect = 7.8
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 36 LHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYP 67
+ ++A +Y P+ D + + F + +P
Sbjct: 2 MGSLAEWYQRIPTPDDLTRVESLFANMQAQFP 33
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport
signal, disease mutation, endoplasmic reticulum,
ER-golgi transport, golgi apparatus, membrane; 2.70A
{Homo sapiens} PDB: 3eg9_B
Length = 770
Score = 25.2 bits (54), Expect = 8.0
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 85 ATSSQSSLSQWLCWLHNGVNEKL 107
SS +LC +H + + L
Sbjct: 747 GLYGGSSYVDFLCCVHKEICQLL 769
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic;
2.68A {Leishmania infantum}
Length = 227
Score = 24.7 bits (54), Expect = 9.3
Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 9/57 (15%)
Query: 30 QHTWGFLHTVAAYYPDKPSSDQQ----KDMSTFFTLLSKFYPCEVCATDLAEQLKVR 82
Q + G A + + K ++ S F +T LA L
Sbjct: 104 QGSAG-----AQLHAGLHTQRINAVIRKGVTQQADSYSAFVEDNGVSTGLAGLLHSI 155
>3gbc_A Pyrazinamidase/nicotinamidas PNCA; nicotinamidase - pyrazinamidase,
resistance to pyrazinamide, hydrolase; 2.20A
{Mycobacterium tuberculosis} PDB: 3pl1_A
Length = 186
Score = 24.5 bits (54), Expect = 10.0
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 7/55 (12%)
Query: 30 QHTWGFLHTVAAYYP--DKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVR 82
T G A ++P D + + + S F + T L L+ R
Sbjct: 74 SGTPG-----ADFHPSLDTSAIEAVFYKGAYTGAYSGFEGVDENGTPLLNWLRQR 123
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.128 0.419
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,870,166
Number of extensions: 86611
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 42
Length of query: 129
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 46
Effective length of database: 4,384,350
Effective search space: 201680100
Effective search space used: 201680100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.1 bits)