RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy513
         (129 letters)



>d1oqca_ a.24.15.1 (A:) Augmenter of liver regeneration {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 112

 Score =  130 bits (329), Expect = 3e-41
 Identities = 66/110 (60%), Positives = 87/110 (79%)

Query: 20  NCPLDKDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQL 79
           +CP D+++LG++TW FLHT+AAYYPD P+ +QQ+DM+ F  + SKFYPCE CA D+ +++
Sbjct: 2   DCPQDREELGRNTWAFLHTLAAYYPDMPTPEQQQDMAQFIHIFSKFYPCEECAEDIRKRI 61

Query: 80  KVRPPATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDGWSDGS 129
               P TS++ S SQWLC LHN VN KLGKP FDC++V+ERWRDGW DGS
Sbjct: 62  DRSQPDTSTRVSFSQWLCRLHNEVNRKLGKPDFDCSRVDERWRDGWKDGS 111


>d1jr8a_ a.24.15.1 (A:) Thiol oxidase Erv2p {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 105

 Score =  121 bits (305), Expect = 8e-38
 Identities = 33/100 (33%), Positives = 62/100 (62%)

Query: 25  KDQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPP 84
           K ++G+ +W + HT+ A +PD+P+ ++++ + TF  L ++ YPC  C+    + ++  P 
Sbjct: 5   KKEVGRASWKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEKYPV 64

Query: 85  ATSSQSSLSQWLCWLHNGVNEKLGKPLFDCTKVNERWRDG 124
            TSS+++ + W C +HN VNE L K ++DC  + E +  G
Sbjct: 65  QTSSRTAAAMWGCHIHNKVNEYLKKDIYDCATILEDYDCG 104


>d1ivza_ d.58.41.1 (A:) SEA domain from the hypothetical protein
           homologous to mucin 16 {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 132

 Score = 27.8 bits (62), Expect = 0.26
 Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 4/39 (10%)

Query: 1   SKQTGSASGVDSTQQHSPSNCPLDKDQ----LGQHTWGF 35
                + +GVDS    SP    +D+        + T   
Sbjct: 72  VSNNNNHTGVDSLCNFSPLARRVDRVAIYEEFLRMTHNG 110


>d1gg3a3 d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 81

 Score = 25.9 bits (57), Expect = 0.74
 Identities = 11/42 (26%), Positives = 13/42 (30%), Gaps = 8/42 (19%)

Query: 26 DQLGQHTWGFLHTVAAYYPDKPSSDQQKDMSTFFTLLSKFYP 67
          D     TW            K    Q + +   FT   KFYP
Sbjct: 48 DNATSKTW--------LDSAKEIKKQVRGVPWNFTFNVKFYP 81


>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein
           CadC {Staphylococcus aureus [TaxId: 1280]}
          Length = 108

 Score = 25.2 bits (55), Expect = 1.7
 Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 6/34 (17%)

Query: 69  EVCATDLAEQLKVRPPATSSQSSLSQWLCWLHNG 102
           E+C  D+A  L V      + ++ S  L  L+  
Sbjct: 45  ELCVCDIANILGV------TIANASHHLRTLYKQ 72


>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria
          (Synechococcus), pcc7942 [TaxId: 1129]}
          Length = 98

 Score = 25.1 bits (55), Expect = 1.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 69 EVCATDLAEQLKVRPPATSSQ 89
          E+C  DLA+ + V   A S Q
Sbjct: 36 ELCVGDLAQAIGVSESAVSHQ 56


>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA
          {Staphylococcus aureus [TaxId: 1280]}
          Length = 94

 Score = 24.7 bits (54), Expect = 2.4
 Identities = 5/21 (23%), Positives = 8/21 (38%)

Query: 69 EVCATDLAEQLKVRPPATSSQ 89
          E     ++ QL +     S Q
Sbjct: 31 EASVGHISHQLNLSQSNVSHQ 51


>d2b5dx2 c.6.2.4 (X:1-404) Alpha-amylase AmyC {Thermotoga maritima
          [TaxId: 2336]}
          Length = 404

 Score = 24.3 bits (52), Expect = 5.9
 Identities = 7/30 (23%), Positives = 9/30 (30%)

Query: 15 QHSPSNCPLDKDQLGQHTWGFLHTVAAYYP 44
           H P     + D   +  W F      Y P
Sbjct: 11 AHLPYVHHPEYDHFLEERWLFEAITETYIP 40


>d2i8da1 d.198.4.1 (A:2-122) Uncharacterized protein LSEI2283
          {Lactobacillus casei [TaxId: 1582]}
          Length = 121

 Score = 23.3 bits (50), Expect = 8.1
 Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 6/48 (12%)

Query: 38 TVAAYYPDKPSSDQQKDMSTFFTLLSKFYPCEVCATDLAEQLKVRPPA 85
          ++A +Y   P+ D    + + F  +   +P       L  + K   P 
Sbjct: 2  SLAEWYQRIPTPDDLTRVESLFANMQAQFP------QLKLEFKWNQPM 43


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.128    0.419 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 477,861
Number of extensions: 17996
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 11
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (22.5 bits)