BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5132
(204 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TKJ|A Chain A, Crystal Structure Of Human Asparaginase-Like Protein 1
Thr168ala
pdb|3TKJ|B Chain B, Crystal Structure Of Human Asparaginase-Like Protein 1
Thr168ala
Length = 319
Score = 139 bits (349), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 110/202 (54%), Gaps = 4/202 (1%)
Query: 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPNVTEIXXXXX 60
MEKTPH L+ GA +F MG+P+IP +L+TE K LEK E + +
Sbjct: 120 MEKTPHCFLTDQGAAQFAAAMGVPEIPGEKLVTERNKKRLEK---EKHEKGAQKTDCQKN 176
Query: 61 XXXXXXXXXXXXHMVS-CTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSI 119
V+ TSTGGI KM GRVGD+P G+GGY D++I +VSTTGHG+SI
Sbjct: 177 LGAVGAVALDCKGNVAYATSTGGIVNKMVGRVGDSPCLGAGGYADNDIGAVSTTGHGESI 236
Query: 120 LRYCVAHRILHYIEQGLSATEASQKALDGMRTRVGKTAGAITVTKCGKVGVYFNSPKMAW 179
L+ +A L +IEQG + EA+ +L M++RV G I V+K G + S M W
Sbjct: 237 LKVNLARLTLFHIEQGKTVEEAADLSLGYMKSRVKGLGGLIVVSKTGDWVAKWTSTSMPW 296
Query: 180 AYIRGTKLHYGIYPGQDIEEDL 201
A + KLH+GI P DL
Sbjct: 297 AAAKDGKLHFGIDPDDTTITDL 318
>pdb|4GDT|A Chain A, Crystal Structure Of Malonate-Bound Human L-Asparaginase
Protein
pdb|4GDT|B Chain B, Crystal Structure Of Malonate-Bound Human L-Asparaginase
Protein
pdb|4GDU|A Chain A, Crystal Structure Of Sulfate-Bound Human L-Asparaginase
Protein
pdb|4GDU|B Chain B, Crystal Structure Of Sulfate-Bound Human L-Asparaginase
Protein
pdb|4GDV|A Chain A, Crystal Structure Of Partially-Cleaved Human
L-Asparaginase Protein In Complex With L-Aspartate
pdb|4GDV|B Chain B, Crystal Structure Of Partially-Cleaved Human
L-Asparaginase Protein In Complex With L-Aspartate
pdb|4GDW|A Chain A, Crystal Structure Of Fully-Cleaved Human L-Asparaginase
Protein In Complex With L-Aspartate
pdb|4GDW|B Chain B, Crystal Structure Of Fully-Cleaved Human L-Asparaginase
Protein In Complex With L-Aspartate
Length = 310
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 110/202 (54%), Gaps = 4/202 (1%)
Query: 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPNVTEIXXXXX 60
MEKTPH L+ GA +F MG+P+IP +L+TE K LEK E + +
Sbjct: 111 MEKTPHCFLTDQGAAQFAAAMGVPEIPGEKLVTERNKKRLEK---EKHEKGAQKTDCQKN 167
Query: 61 XXXXXXXXXXXXHMVS-CTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSI 119
V+ TSTGGI KM GRVGD+P G+GGY D++I +VSTTGHG+SI
Sbjct: 168 LGTVGAVALDCKGNVAYATSTGGIVNKMVGRVGDSPCLGAGGYADNDIGAVSTTGHGESI 227
Query: 120 LRYCVAHRILHYIEQGLSATEASQKALDGMRTRVGKTAGAITVTKCGKVGVYFNSPKMAW 179
L+ +A L +IEQG + EA+ +L M++RV G I V+K G + S M W
Sbjct: 228 LKVNLARLTLFHIEQGKTVEEAADLSLGYMKSRVKGLGGLIVVSKTGDWVAKWTSTSMPW 287
Query: 180 AYIRGTKLHYGIYPGQDIEEDL 201
A + KLH+GI P DL
Sbjct: 288 AAAKDGKLHFGIDPDDTTITDL 309
>pdb|4ET0|A Chain A, Crystal Structure Of Circularly Permuted Human
Asparaginase-Like Protein 1
pdb|4ET0|B Chain B, Crystal Structure Of Circularly Permuted Human
Asparaginase-Like Protein 1
Length = 327
Score = 137 bits (345), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 111/206 (53%), Gaps = 5/206 (2%)
Query: 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCE--GQDPNVTE---I 55
MEKTPH L+ GA +F MG+P+IP +L+TE K LEK E Q + +
Sbjct: 109 MEKTPHCFLTDQGAAQFAAAMGVPEIPGEKLVTERNKKRLEKEKHEKGAQKTDCQKNLGH 168
Query: 56 XXXXXXXXXXXXXXXXXHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGH 115
++ TSTGGI KM GRVGD+P G+GGY D++I +VSTTGH
Sbjct: 169 HHHHHMTVGAVALDCKGNVAYATSTGGIVNKMVGRVGDSPCLGAGGYADNDIGAVSTTGH 228
Query: 116 GDSILRYCVAHRILHYIEQGLSATEASQKALDGMRTRVGKTAGAITVTKCGKVGVYFNSP 175
G+SIL+ +A L +IEQG + EA+ +L M++RV G I V+K G + S
Sbjct: 229 GESILKVNLARLTLFHIEQGKTVEEAADLSLGYMKSRVKGLGGLIVVSKTGDWVAKWTST 288
Query: 176 KMAWAYIRGTKLHYGIYPGQDIEEDL 201
M WA + KLH+GI P DL
Sbjct: 289 SMPWAAAKDGKLHFGIDPDDTTITDL 314
>pdb|9GAA|A Chain A, Precursor Of The T152a Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAA|C Chain C, Precursor Of The T152a Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 13/179 (7%)
Query: 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPNVTEIXXXXX 60
MEKTPH +L GDGA EF G + L+T ++ +++L Q + I
Sbjct: 96 MEKTPHVMLVGDGALEFALSQGFKK---ENLLTAESEKEWKEWLKTSQYKPIVNIENHDA 152
Query: 61 XXXXXXXXXXXXHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSIL 120
++ +T G+ KM GRVGD+PI G+G + D+ I + + TGHG+ ++
Sbjct: 153 IGMIALDAQG--NLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGHGEEVI 210
Query: 121 RYCVAHRILHYIEQGLSATEASQKALD---GMRTRVGKT-----AGAITVTKCGKVGVY 171
R H ++ + QG + +A ++A++ + R GK G I + K G+ G Y
Sbjct: 211 RTVGTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAY 269
>pdb|1P4K|A Chain A, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant
pdb|1P4K|C Chain C, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant
pdb|1P4V|A Chain A, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant With Glycine
pdb|1P4V|C Chain C, Crystal Structure Of The Glycosylasparaginase Precursor
D151n Mutant With Glycine
Length = 295
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 13/179 (7%)
Query: 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPNVTEIXXXXX 60
MEKTPH +L GDGA EF G + L+T ++ +++L Q + I
Sbjct: 96 MEKTPHVMLVGDGALEFALSQGFKK---ENLLTAESEKEWKEWLKTSQYKPIVNIENHNT 152
Query: 61 XXXXXXXXXXXXHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSIL 120
++ +T G+ KM GRVGD+PI G+G + D+ I + + TGHG+ ++
Sbjct: 153 IGMIALDAQG--NLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGHGEEVI 210
Query: 121 RYCVAHRILHYIEQGLSATEASQKALD---GMRTRVGKT-----AGAITVTKCGKVGVY 171
R H ++ + QG + +A ++A++ + R GK G I + K G+ G Y
Sbjct: 211 RTVGTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAY 269
>pdb|9GAF|A Chain A, Precursor Of The W11f Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAF|C Chain C, Precursor Of The W11f Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 13/179 (7%)
Query: 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPNVTEIXXXXX 60
MEKTPH +L GDGA EF G + L+T ++ +++L Q + I
Sbjct: 96 MEKTPHVMLVGDGALEFALSQGFKK---ENLLTAESEKEWKEWLKTSQYKPIVNIENHDT 152
Query: 61 XXXXXXXXXXXXHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSIL 120
++ +T G+ KM GRVGD+PI G+G + D+ I + + TGHG+ ++
Sbjct: 153 IGMIALDAQG--NLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGHGEEVI 210
Query: 121 RYCVAHRILHYIEQGLSATEASQKALD---GMRTRVGKT-----AGAITVTKCGKVGVY 171
R H ++ + QG + +A ++A++ + R GK G I + K G+ G Y
Sbjct: 211 RTVGTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAY 269
>pdb|3LJQ|A Chain A, Crystal Structure Of The Glycosylasparaginase T152c
Apo-Precursor
pdb|3LJQ|C Chain C, Crystal Structure Of The Glycosylasparaginase T152c
Apo-Precursor
Length = 299
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 13/179 (7%)
Query: 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPNVTEIXXXXX 60
MEKTPH +L GDGA EF G + L+T ++ +++L Q + I
Sbjct: 100 MEKTPHVMLVGDGALEFALSQGFKK---ENLLTAESEKEWKEWLKTSQYKPIVNIENHDC 156
Query: 61 XXXXXXXXXXXXHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSIL 120
++ +T G+ KM GRVGD+PI G+G + D+ I + + TGHG+ ++
Sbjct: 157 IGMIALDAQG--NLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGHGEEVI 214
Query: 121 RYCVAHRILHYIEQGLSATEASQKALD---GMRTRVGKT-----AGAITVTKCGKVGVY 171
R H ++ + QG + +A ++A++ + R GK G I + K G+ G Y
Sbjct: 215 RTVGTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAY 273
>pdb|9GAC|A Chain A, Precursor Of The T152c Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
pdb|9GAC|C Chain C, Precursor Of The T152c Mutant Glycosylasparaginase From
Flavobacterium Meningosepticum
Length = 295
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 13/179 (7%)
Query: 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPNVTEIXXXXX 60
MEKTPH +L GDGA EF G + L+T ++ +++L Q + I
Sbjct: 96 MEKTPHVMLVGDGALEFALSQGFKK---ENLLTAESEKEWKEWLKTSQYKPIVNIENHDC 152
Query: 61 XXXXXXXXXXXXHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSIL 120
++ +T G+ KM GRVGD+PI G+G + D+ I + + TGHG+ ++
Sbjct: 153 IGMIALDAQG--NLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGHGEEVI 210
Query: 121 RYCVAHRILHYIEQGLSATEASQKALD---GMRTRVGKT-----AGAITVTKCGKVGVY 171
R H ++ + QG + +A ++A++ + R GK G I + K G+ G Y
Sbjct: 211 RTVGTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAY 269
>pdb|2ZAK|A Chain A, Orthorhombic Crystal Structure Of Precursor E. Coli
Isoaspartyl PeptidaseL-Asparaginase (Ecaiii) With
Active-Site T179a Mutation
pdb|2ZAK|B Chain B, Orthorhombic Crystal Structure Of Precursor E. Coli
Isoaspartyl PeptidaseL-Asparaginase (Ecaiii) With
Active-Site T179a Mutation
pdb|3C17|A Chain A, Hexagonal Crystal Structure Of Precursor E. Coli
Isoaspartyl Peptidase/l-asparaginase (ecaiii) With
Active-site T179a Mutation
pdb|3C17|B Chain B, Hexagonal Crystal Structure Of Precursor E. Coli
Isoaspartyl Peptidase/l-asparaginase (ecaiii) With
Active-site T179a Mutation
Length = 320
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 92/199 (46%), Gaps = 8/199 (4%)
Query: 1 MEKTPHGILSGDGANEFGRRMGL----PQIPDSELITENAKHALEKFLCEGQDPNVTEIX 56
ME++PH ++ G+GA F G+ P+I + L E A ++
Sbjct: 113 MEQSPHVMMIGEGAENFAFARGMERVSPEIFSTSLRYEQLLAARKEGATVLDHSGAPLDE 172
Query: 57 XXXXXXXXXXXXXXXXHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHG 116
++ + TSTGG+T K+ GRVGD+P+ G+G Y ++ +VS TG G
Sbjct: 173 KQKMGAVGAVALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTG 232
Query: 117 DSILRYCVAHRILHYIEQ-GLSATEASQKALDGMRTRVGKTAGAITVTKCGKVGVYFNSP 175
+ +R A+ I ++ GLS EA ++ + +G + G I + G V + FN+
Sbjct: 233 EVFIRALAAYDIAALMDYGGLSLAEACERVVMEKLPALGGSGGLIAIDHEGNVALPFNTE 292
Query: 176 KM--AWAYIRGTKLHYGIY 192
M AW Y G GIY
Sbjct: 293 GMYRAWGY-AGDTPTTGIY 310
>pdb|1T3M|B Chain B, Structure Of The Isoaspartyl Peptidase With L-Asparaginase
Activity From E. Coli
pdb|1T3M|D Chain D, Structure Of The Isoaspartyl Peptidase With L-Asparaginase
Activity From E. Coli
Length = 147
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 68/123 (55%), Gaps = 4/123 (3%)
Query: 73 HMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSILRYCVAHRILHYI 132
++ + TSTGG+T K+ GRVGD+P+ G+G Y ++ +VS TG G+ +R A+ I +
Sbjct: 12 NLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFIRALAAYDIAALM 71
Query: 133 EQ-GLSATEASQKALDGMRTRVGKTAGAITVTKCGKVGVYFNSPKM--AWAYIRGTKLHY 189
+ GLS EA ++ + +G + G I + G V + FN+ M AW Y G
Sbjct: 72 DYGGLSLAEACERVVMEKLPALGGSGGLIAIDHEGNVALPFNTEGMYRAWGY-AGDTPTT 130
Query: 190 GIY 192
GIY
Sbjct: 131 GIY 133
>pdb|1JN9|B Chain B, Structure Of Putative Asparaginase Encoded By Escherichia
Coli Ybik Gene
pdb|1JN9|D Chain D, Structure Of Putative Asparaginase Encoded By Escherichia
Coli Ybik Gene
pdb|1K2X|B Chain B, Crystal Structure Of Putative Asparaginase Encoded By
Escherichia Coli Ybik Gene
pdb|1K2X|D Chain D, Crystal Structure Of Putative Asparaginase Encoded By
Escherichia Coli Ybik Gene
Length = 143
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 68/123 (55%), Gaps = 4/123 (3%)
Query: 73 HMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSILRYCVAHRILHYI 132
++ + TSTGG+T K+ GRVGD+P+ G+G Y ++ +VS TG G+ +R A+ I +
Sbjct: 12 NLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFIRALAAYDIAALM 71
Query: 133 EQ-GLSATEASQKALDGMRTRVGKTAGAITVTKCGKVGVYFNSPKM--AWAYIRGTKLHY 189
+ GLS EA ++ + +G + G I + G V + FN+ M AW Y G
Sbjct: 72 DYGGLSLAEACERVVMEKLPALGGSGGLIAIDHEGNVALPFNTEGMYRAWGY-AGDTPTT 130
Query: 190 GIY 192
GIY
Sbjct: 131 GIY 133
>pdb|2ZAL|B Chain B, Crystal Structure Of E. Coli Isoaspartyl
AminopeptidaseL-Asparaginase In Complex With L-Aspartate
pdb|2ZAL|D Chain D, Crystal Structure Of E. Coli Isoaspartyl
AminopeptidaseL-Asparaginase In Complex With L-Aspartate
Length = 137
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 64/112 (57%), Gaps = 3/112 (2%)
Query: 73 HMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSILRYCVAHRILHYI 132
++ + TSTGG+T K+ GRVGD+P+ G+G Y ++ +VS TG G+ +R A+ I +
Sbjct: 12 NLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFIRALAAYDIAALM 71
Query: 133 EQ-GLSATEASQKALDGMRTRVGKTAGAITVTKCGKVGVYFNSPKM--AWAY 181
+ GLS EA ++ + +G + G I + G V + FN+ M AW Y
Sbjct: 72 DYGGLSLAEACERVVMEKLPALGGSGGLIAIDHEGNVALPFNTEGMYRAWGY 123
>pdb|2GEZ|B Chain B, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|D Chain D, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|F Chain F, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|H Chain H, Crystal Structure Of Potassium-Independent Plant
Asparaginase
Length = 133
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 65/106 (61%), Gaps = 4/106 (3%)
Query: 73 HMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSILRYCVAHRILHYI 132
++ S TSTGG+ KM GR+GDTP+ G+G Y ++ + +VS TG G+ I+R VA + +
Sbjct: 12 NLASATSTGGLVNKMVGRIGDTPLIGAGTYANE-LCAVSATGKGEEIIRATVARDVAALM 70
Query: 133 E-QGLSATEASQKALDGMRTRVGKTAGAITVTKCGKVGVYFNSPKM 177
E +GLS EA+ + RT G T G I V+ G++ + FN+ M
Sbjct: 71 EFKGLSLKEAADFVIH-ERTPKG-TVGLIAVSAAGEIAMPFNTTGM 114
>pdb|1AYY|B Chain B, Glycosylasparaginase
pdb|1AYY|D Chain D, Glycosylasparaginase
pdb|2GAW|B Chain B, Wild Type Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAW|D Chain D, Wild Type Glycosylasparaginase From Flavobacterium
Meningosepticum
Length = 144
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 9/104 (8%)
Query: 76 SCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSILRYCVAHRILHYIEQG 135
+CT T G+ KM GRVGD+PI G+G + D+ I + + TGHG+ ++R H ++ + QG
Sbjct: 16 ACT-TSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGHGEEVIRTVGTHLVVELMNQG 74
Query: 136 LSATEASQKALD---GMRTRVGKT-----AGAITVTKCGKVGVY 171
+ +A ++A++ + R GK G I + K G+ G Y
Sbjct: 75 RTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAY 118
>pdb|2GAC|B Chain B, T152c Mutant Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAC|D Chain D, T152c Mutant Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GL9|B Chain B, Crystal Structure Of Glycosylasparaginase-Substrate
Complex
pdb|2GL9|D Chain D, Crystal Structure Of Glycosylasparaginase-Substrate
Complex
Length = 144
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 9/104 (8%)
Query: 76 SCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSILRYCVAHRILHYIEQG 135
+CT T G+ KM GRVGD+PI G+G + D+ I + + TGHG+ ++R H ++ + QG
Sbjct: 16 ACT-TSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGHGEEVIRTVGTHLVVELMNQG 74
Query: 136 LSATEASQKALD---GMRTRVGKT-----AGAITVTKCGKVGVY 171
+ +A ++A++ + R GK G I + K G+ G Y
Sbjct: 75 RTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAY 118
>pdb|1APY|B Chain B, Human Aspartylglucosaminidase
pdb|1APY|D Chain D, Human Aspartylglucosaminidase
pdb|1APZ|B Chain B, Human Aspartylglucosaminidase Complex With Reaction
Product
pdb|1APZ|D Chain D, Human Aspartylglucosaminidase Complex With Reaction
Product
Length = 141
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 55/88 (62%)
Query: 73 HMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSILRYCVAHRILHYI 132
H+ + TST GI K+ GRVGD+PIPG+G Y DD + + TG+GD ++R+ +++ + Y+
Sbjct: 12 HIAAGTSTNGIKFKIHGRVGDSPIPGAGAYADDTAGAAAATGNGDILMRFLPSYQAVEYM 71
Query: 133 EQGLSATEASQKALDGMRTRVGKTAGAI 160
+G T A QK + ++ + GA+
Sbjct: 72 RRGEDPTIACQKVISRIQKHFPEFFGAV 99
>pdb|2A8J|A Chain A, Crystal Structure Of Human Taspase1 (Acivated Form)
pdb|2A8J|B Chain B, Crystal Structure Of Human Taspase1 (Acivated Form)
Length = 420
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 69/172 (40%), Gaps = 26/172 (15%)
Query: 3 KTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKF-----LCEGQDPNVTEIXX 57
+ P L G+GA + G+P P + + T + A ++ L E D + ++
Sbjct: 159 RIPPCFLVGEGAYRWAVDHGIPSCPPNIMTTRFSLAAFKRNKRKLELAERVDTDFMQLKK 218
Query: 58 XXXXXXXXXXXXXXX-----------HMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDN 106
++ + S+GG+ K GRVG + G G + ++
Sbjct: 219 RRQSSEKENDSGTLDTVGAVVVDHEGNVAAAVSSGGLALKHPGRVGQAALYGCGCWAENT 278
Query: 107 IA------SVSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKALDGMRTR 152
A +VST+G G+ ++R +A H L A +A Q L+ M+ +
Sbjct: 279 GAHNPYSTAVSTSGCGEHLVRTILARECSH----ALQAEDAHQALLETMQNK 326
>pdb|2A8M|A Chain A, Crystal Structure Of Human Taspase1 (T234s Mutant)
pdb|2A8M|B Chain B, Crystal Structure Of Human Taspase1 (T234s Mutant)
Length = 420
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 69/172 (40%), Gaps = 26/172 (15%)
Query: 3 KTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKF-----LCEGQDPNVTEIXX 57
+ P L G+GA + G+P P + + T + A ++ L E D + ++
Sbjct: 159 RIPPCFLVGEGAYRWAVDHGIPSCPPNIMTTRFSLAAFKRNKRKLELAERVDTDFMQLKK 218
Query: 58 XXXXXXXXXXXXXXX-----------HMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDN 106
++ + S+GG+ K GRVG + G G + ++
Sbjct: 219 RRQSSEKENDSGTLDSVGAVVVDHEGNVAAAVSSGGLALKHPGRVGQAALYGCGCWAENT 278
Query: 107 IA------SVSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKALDGMRTR 152
A +VST+G G+ ++R +A H L A +A Q L+ M+ +
Sbjct: 279 GAHNPYSTAVSTSGCGEHLVRTILARECSH----ALQAEDAHQALLETMQNK 326
>pdb|2A8L|A Chain A, Crystal Structure Of Human Taspase1 (T234a Mutant)
pdb|2A8L|B Chain B, Crystal Structure Of Human Taspase1 (T234a Mutant)
Length = 420
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 69/172 (40%), Gaps = 26/172 (15%)
Query: 3 KTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKF-----LCEGQDPNVTEIXX 57
+ P L G+GA + G+P P + + T + A ++ L E D + ++
Sbjct: 159 RIPPCFLVGEGAYRWAVDHGIPSCPPNIMTTRFSLAAFKRNKRKLELAERVDTDFMQLKK 218
Query: 58 XXXXXXXXXXXXXXX-----------HMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDN 106
++ + S+GG+ K GRVG + G G + ++
Sbjct: 219 RRQSSEKENDSGTLDAVGAVVVDHEGNVAAAVSSGGLALKHPGRVGQAALYGCGCWAENT 278
Query: 107 IA------SVSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKALDGMRTR 152
A +VST+G G+ ++R +A H L A +A Q L+ M+ +
Sbjct: 279 GAHNPYSTAVSTSGCGEHLVRTILARECSH----ALQAEDAHQALLETMQNK 326
>pdb|1AYY|A Chain A, Glycosylasparaginase
pdb|1AYY|C Chain C, Glycosylasparaginase
pdb|2GAC|A Chain A, T152c Mutant Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAC|C Chain C, T152c Mutant Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAW|A Chain A, Wild Type Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GAW|C Chain C, Wild Type Glycosylasparaginase From Flavobacterium
Meningosepticum
pdb|2GL9|A Chain A, Crystal Structure Of Glycosylasparaginase-Substrate
Complex
pdb|2GL9|C Chain C, Crystal Structure Of Glycosylasparaginase-Substrate
Complex
Length = 151
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQ 48
MEKTPH +L GDGA EF G + L+T ++ +++L Q
Sbjct: 96 MEKTPHVMLVGDGALEFALSQGFKK---ENLLTAESEKEWKEWLKTSQ 140
>pdb|2A8I|A Chain A, Crystal Structure Of Human Taspase1
pdb|2A8I|B Chain B, Crystal Structure Of Human Taspase1
Length = 420
Score = 33.9 bits (76), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 73 HMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIA------SVSTTGHGDSILRYCVAH 126
++ + S+GG+ K GRVG + G G + ++ A +VST+G G+ ++R +A
Sbjct: 245 NVAAAVSSGGLALKHPGRVGQAALYGCGCWAENTGAHNPYSTAVSTSGCGEHLVRTILAR 304
Query: 127 RILHYIEQGLSATEASQKALDGMRTR 152
H L A +A Q L+ + +
Sbjct: 305 ECSH----ALQAEDAHQALLETXQNK 326
>pdb|2GEZ|A Chain A, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|C Chain C, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|E Chain E, Crystal Structure Of Potassium-Independent Plant
Asparaginase
pdb|2GEZ|G Chain G, Crystal Structure Of Potassium-Independent Plant
Asparaginase
Length = 195
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELIT----ENAKHALE 41
M+KTPH L+ GA +F ++ G+ + S LIT E K A+E
Sbjct: 116 MDKTPHIYLAFQGAQDFAKQQGVETVDSSHLITAENVERLKLAIE 160
>pdb|3PSQ|A Chain A, Crystal Structure Of Spy0129, A Streptococcus Pyogenes
Class B Sortase Involved In Pilus Biogenesis
pdb|3PSQ|B Chain B, Crystal Structure Of Spy0129, A Streptococcus Pyogenes
Class B Sortase Involved In Pilus Biogenesis
Length = 206
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 157 AGAITVTKCGKVGVYF------NSPKMAWAYIRGTKLHYGIYPGQDIEEDLAQS 204
A A + K GV F NS MAW ++GT + Y I G++ E + +S
Sbjct: 11 ANATNYQQYKKKGVQFDDLLAINSDVMAWLTVKGTHIDYPIVQGENNLEYINKS 64
>pdb|3G23|A Chain A, Crystal Structure Of A Ld-Carboxypeptidase A (Saro_1426)
From Novosphingobium Aromaticivorans Dsm At 1.89 A
Resolution
pdb|3G23|B Chain B, Crystal Structure Of A Ld-Carboxypeptidase A (Saro_1426)
From Novosphingobium Aromaticivorans Dsm At 1.89 A
Resolution
Length = 274
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 73 HMVSCTSTGGITGKMKGRVGDTP 95
H+ SC + GI G GRV D P
Sbjct: 207 HVTSCLADAGIAGLRLGRVSDVP 229
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 126 HRILHYIEQGLSATEASQKALDGMRTRVGKTAGAITVTKCGKV 168
H + +++G++ EA ++ +R GKT+ IT+ CG++
Sbjct: 134 HVVFGKVKEGMNIVEAMER----FGSRNGKTSKKITIADCGQL 172
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 126 HRILHYIEQGLSATEASQKALDGMRTRVGKTAGAITVTKCGKV 168
H + +++G++ EA ++ +R GKT+ IT+ CG++
Sbjct: 145 HVVFGKVKEGMNIVEAMER----FGSRNGKTSKKITIADCGQL 183
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 126 HRILHYIEQGLSATEASQKALDGMRTRVGKTAGAITVTKCGKV 168
H + +++G++ EA ++ +R GKT+ IT+ CG++
Sbjct: 126 HVVFGKVKEGMNIVEAMER----FGSRNGKTSKKITIADCGQL 164
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 126 HRILHYIEQGLSATEASQKALDGMRTRVGKTAGAITVTKCGKV 168
H + +++G++ EA ++ +R GKT+ IT+ CG++
Sbjct: 126 HVVFGKVKEGMNIVEAMER----FGSRNGKTSKKITIADCGQL 164
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 126 HRILHYIEQGLSATEASQKALDGMRTRVGKTAGAITVTKCGKV 168
H + +++G++ EA ++ +R GKT+ IT+ CG++
Sbjct: 126 HVVFGKVKEGMNIVEAMER----FGSRNGKTSKKITIADCGQL 164
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 126 HRILHYIEQGLSATEASQKALDGMRTRVGKTAGAITVTKCGKV 168
H + +++G++ EA ++ +R GKT+ IT+ CG++
Sbjct: 126 HVVFGKVKEGMNIVEAMER----FGSRNGKTSKKITIADCGQL 164
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 126 HRILHYIEQGLSATEASQKALDGMRTRVGKTAGAITVTKCGKV 168
H + +++G++ EA ++ +R GKT+ IT+ CG++
Sbjct: 126 HVVFGKVKEGMNIVEAMER----FGSRNGKTSKKITIADCGQL 164
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 126 HRILHYIEQGLSATEASQKALDGMRTRVGKTAGAITVTKCGKV 168
H + +++G++ EA ++ +R GKT+ IT+ CG++
Sbjct: 126 HVVFGKVKEGMNIVEAMER----FGSRNGKTSKKITIADCGQL 164
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 126 HRILHYIEQGLSATEASQKALDGMRTRVGKTAGAITVTKCGKV 168
H + +++G++ EA ++ +R GKT+ IT+ CG++
Sbjct: 126 HVVFGKVKEGMNIVEAMER----FGSRNGKTSKKITIADCGQL 164
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 126 HRILHYIEQGLSATEASQKALDGMRTRVGKTAGAITVTKCGKV 168
H + +++G++ EA ++ +R GKT+ IT+ CG++
Sbjct: 125 HVVFGKVKEGMNIVEAMER----FGSRNGKTSKKITIADCGQL 163
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 126 HRILHYIEQGLSATEASQKALDGMRTRVGKTAGAITVTKCGKV 168
H + +++G++ EA ++ +R GKT+ IT+ CG++
Sbjct: 126 HVVFGKVKEGMNIVEAMER----FGSRNGKTSKKITIADCGQL 164
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 126 HRILHYIEQGLSATEASQKALDGMRTRVGKTAGAITVTKCGKV 168
H + +++G++ EA ++ +R GKT+ IT+ CG++
Sbjct: 126 HVVFGKVKEGMNIVEAMER----FGSRNGKTSKKITIADCGQL 164
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 126 HRILHYIEQGLSATEASQKALDGMRTRVGKTAGAITVTKCGKV 168
H + +++G++ EA ++ +R GKT+ IT+ CG++
Sbjct: 125 HVVFGAVKEGMNIVEAMER----FGSRNGKTSKKITIADCGQL 163
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 126 HRILHYIEQGLSATEASQKALDGMRTRVGKTAGAITVTKCGKV 168
H + +++G++ EA ++ +R GKT+ IT+ CG++
Sbjct: 130 HVVFGKVKEGMNIVEAMER----FGSRNGKTSKKITIADCGQL 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,182,345
Number of Sequences: 62578
Number of extensions: 232963
Number of successful extensions: 546
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 511
Number of HSP's gapped (non-prelim): 41
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)