Query psy5132
Match_columns 204
No_of_seqs 144 out of 972
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 18:10:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5132.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5132hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10226 isoaspartyl peptidase 100.0 1.1E-59 2.3E-64 415.4 24.3 193 1-193 114-312 (313)
2 PLN02689 Bifunctional isoaspar 100.0 2E-59 4.3E-64 414.4 22.4 189 1-192 113-317 (318)
3 cd04513 Glycosylasparaginase G 100.0 1.2E-57 2.6E-62 393.5 21.7 168 1-181 91-262 (263)
4 PLN02937 Putative isoaspartyl 100.0 2.3E-55 5.1E-60 399.8 24.1 200 1-200 128-396 (414)
5 cd04702 ASRGL1_like ASRGL1_lik 100.0 6.8E-54 1.5E-58 368.8 20.7 154 1-191 107-260 (261)
6 COG1446 Asparaginase [Amino ac 100.0 7.6E-54 1.7E-58 372.3 17.8 184 1-186 109-300 (307)
7 KOG1592|consensus 100.0 1.5E-52 3.1E-57 363.8 16.9 192 2-194 118-324 (326)
8 cd04512 Ntn_Asparaginase_2_lik 100.0 3.9E-52 8.5E-57 356.4 18.1 145 1-182 104-248 (248)
9 cd04701 Asparaginase_2 L-Aspar 100.0 6.6E-52 1.4E-56 357.3 19.1 149 1-185 110-259 (260)
10 cd04703 Asparaginase_2_like A 100.0 9.2E-52 2E-56 353.5 16.8 147 1-181 99-245 (246)
11 PF01112 Asparaginase_2: Aspar 100.0 9.3E-52 2E-56 366.7 15.2 181 1-184 112-304 (319)
12 cd04514 Taspase1_like Taspase1 100.0 1.1E-48 2.3E-53 344.0 19.2 155 3-193 118-287 (303)
13 KOG1593|consensus 100.0 7.7E-43 1.7E-47 298.3 16.3 179 1-182 119-330 (349)
14 PF06267 DUF1028: Family of un 91.4 1.2 2.5E-05 37.4 7.8 102 62-180 1-103 (190)
15 PLN02180 gamma-glutamyl transp 85.4 5.7 0.00012 39.1 9.2 85 59-145 417-540 (639)
16 PF01019 G_glu_transpept: Gamm 83.9 5.2 0.00011 38.0 8.1 84 59-144 324-442 (510)
17 TIGR00066 g_glut_trans gamma-g 83.7 8.3 0.00018 36.8 9.4 85 59-145 341-455 (516)
18 PRK09615 ggt gamma-glutamyltra 81.9 8.6 0.00019 37.4 8.8 86 59-145 389-513 (581)
19 PLN02198 glutathione gamma-glu 80.2 15 0.00031 35.8 9.7 85 59-145 366-491 (573)
20 COG0405 Ggt Gamma-glutamyltran 59.9 1E+02 0.0022 30.0 10.2 81 59-145 353-472 (539)
21 cd04702 ASRGL1_like ASRGL1_lik 55.9 25 0.00054 30.9 5.1 26 60-85 223-248 (261)
22 PLN02689 Bifunctional isoaspar 53.2 13 0.00029 33.5 3.0 26 61-86 279-304 (318)
23 PF06739 SBBP: Beta-propeller 50.5 31 0.00068 20.9 3.5 25 59-83 11-35 (38)
24 cd04512 Ntn_Asparaginase_2_lik 49.0 38 0.00083 29.5 5.1 26 60-85 220-245 (248)
25 COG1446 Asparaginase [Amino ac 47.9 18 0.0004 32.4 3.0 28 155-182 175-202 (307)
26 cd04513 Glycosylasparaginase G 47.8 41 0.00088 29.6 5.1 28 155-182 138-165 (263)
27 cd04701 Asparaginase_2 L-Aspar 46.4 58 0.0013 28.6 5.9 28 155-182 134-161 (260)
28 PF01112 Asparaginase_2: Aspar 46.2 19 0.00041 32.5 2.9 25 61-85 275-299 (319)
29 PRK05114 hypothetical protein; 45.3 62 0.0014 22.0 4.6 32 124-155 16-47 (59)
30 PRK10226 isoaspartyl peptidase 42.4 27 0.00059 31.4 3.3 26 61-86 273-298 (313)
31 PLN02937 Putative isoaspartyl 42.1 25 0.00055 32.9 3.1 27 155-181 228-254 (414)
32 cd04703 Asparaginase_2_like A 42.0 46 0.001 29.0 4.5 25 60-85 219-243 (246)
33 PF07433 DUF1513: Protein of u 39.4 58 0.0013 29.3 4.9 58 60-118 216-279 (305)
34 PF03701 UPF0181: Uncharacteri 39.2 83 0.0018 20.8 4.3 30 124-153 16-45 (51)
35 PF14382 ECR1_N: Exosome compl 38.3 19 0.00041 22.3 1.2 25 90-114 7-33 (39)
36 COG3342 Uncharacterized conser 34.7 36 0.00078 29.8 2.7 67 102-175 32-98 (265)
37 PTZ00246 proteasome subunit al 33.7 1.2E+02 0.0026 25.8 5.8 41 109-153 160-200 (253)
38 PF01935 DUF87: Domain of unkn 32.7 61 0.0013 26.7 3.8 44 106-172 25-68 (229)
39 cd04514 Taspase1_like Taspase1 31.8 48 0.001 29.7 3.1 28 154-181 139-166 (303)
40 cd03759 proteasome_beta_type_3 30.6 1.5E+02 0.0034 24.0 5.8 38 110-151 130-167 (195)
41 PF05305 DUF732: Protein of un 30.4 93 0.002 22.3 4.0 28 121-148 45-72 (100)
42 PF14824 Sirohm_synth_M: Siroh 29.8 14 0.0003 21.8 -0.4 16 71-86 2-17 (30)
43 cd03764 proteasome_beta_archea 29.0 2.7E+02 0.0059 22.2 6.9 61 99-166 117-183 (188)
44 cd03760 proteasome_beta_type_4 28.6 2.8E+02 0.006 22.4 7.0 37 110-150 131-169 (197)
45 COG0638 PRE1 20S proteasome, a 28.5 1.3E+02 0.0029 25.5 5.2 48 99-153 149-196 (236)
46 PRK03996 proteasome subunit al 28.0 2.3E+02 0.0049 23.8 6.6 41 109-153 163-203 (241)
47 TIGR03690 20S_bact_beta protea 27.4 1.5E+02 0.0033 24.6 5.3 40 110-153 133-172 (219)
48 PF08923 MAPKK1_Int: Mitogen-a 27.4 1.7E+02 0.0037 22.5 5.1 34 142-175 3-36 (119)
49 COG3140 Uncharacterized protei 27.3 1E+02 0.0022 20.9 3.3 29 126-154 18-46 (60)
50 PF07494 Reg_prop: Two compone 27.1 1.1E+02 0.0024 16.4 3.4 20 59-78 3-22 (24)
51 cd01912 proteasome_beta protea 25.6 3.4E+02 0.0073 21.5 6.9 46 99-151 118-163 (189)
52 PTZ00488 Proteasome subunit be 25.4 2.4E+02 0.0053 24.1 6.3 37 111-151 165-201 (247)
53 TIGR01354 cyt_deam_tetra cytid 25.3 1.2E+02 0.0026 23.2 4.0 22 157-178 23-44 (127)
54 TIGR03634 arc_protsome_B prote 25.2 3.5E+02 0.0076 21.4 7.0 38 110-151 126-163 (185)
55 PF12341 DUF3639: Protein of u 23.9 85 0.0018 18.0 2.1 18 63-81 4-21 (27)
56 cd01169 HMPP_kinase 4-amino-5- 23.9 1.3E+02 0.0029 24.6 4.4 39 109-152 200-238 (242)
57 cd01906 proteasome_protease_Hs 23.9 2.2E+02 0.0047 22.3 5.4 47 99-152 120-166 (182)
58 cd03761 proteasome_beta_type_5 23.0 3.9E+02 0.0084 21.4 6.8 38 110-151 125-162 (188)
59 TIGR01916 F420_cofE F420-0:gam 22.6 1.5E+02 0.0032 25.9 4.4 32 136-167 122-153 (243)
60 PRK05578 cytidine deaminase; V 22.1 2.4E+02 0.0052 21.9 5.2 24 157-180 26-49 (131)
61 PRK05756 pyridoxamine kinase; 21.9 1.5E+02 0.0033 25.4 4.4 37 110-151 215-251 (286)
62 PRK12411 cytidine deaminase; P 21.6 2.4E+02 0.0051 22.0 5.1 23 157-179 26-48 (132)
63 cd01173 pyridoxal_pyridoxamine 21.4 1.6E+02 0.0035 24.5 4.4 38 110-152 211-248 (254)
64 COG0351 ThiD Hydroxymethylpyri 21.4 1.7E+02 0.0037 25.7 4.6 32 123-154 213-244 (263)
65 COG3363 Archaeal IMP cyclohydr 21.4 4.9E+02 0.011 21.7 7.1 25 127-151 78-102 (200)
66 cd03762 proteasome_beta_type_6 21.1 4.3E+02 0.0093 21.0 6.9 47 99-152 117-163 (188)
67 PF12637 TSCPD: TSCPD domain; 21.0 1.3E+02 0.0029 21.9 3.3 26 118-143 37-62 (95)
68 KOG4115|consensus 21.0 1.8E+02 0.0039 21.9 3.9 28 141-169 4-31 (97)
69 PF00227 Proteasome: Proteasom 20.7 4E+02 0.0088 20.8 6.4 47 99-151 127-173 (190)
70 cd03753 proteasome_alpha_type_ 20.7 2.3E+02 0.005 23.2 5.1 46 100-152 153-198 (213)
71 PRK13293 F420-0--gamma-glutamy 20.7 1.7E+02 0.0036 25.6 4.3 32 136-167 123-154 (245)
72 COG0100 RpsK Ribosomal protein 20.6 71 0.0015 25.2 1.8 28 59-87 27-54 (129)
73 cd03758 proteasome_beta_type_2 20.5 3.6E+02 0.0078 21.8 6.2 38 110-151 129-166 (193)
74 PF12554 MOZART1: Mitotic-spin 20.3 1.4E+02 0.003 19.5 2.8 21 128-149 27-47 (48)
No 1
>PRK10226 isoaspartyl peptidase; Provisional
Probab=100.00 E-value=1.1e-59 Score=415.37 Aligned_cols=193 Identities=33% Similarity=0.493 Sum_probs=173.5
Q ss_pred CCCCCCeEEecHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCC----ccCCCCCCCceeEEEEcCCCCEEE
Q psy5132 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPNV----TEIGGGGVGTVGAVAVDARGHMVS 76 (204)
Q Consensus 1 me~t~h~lLvG~gA~~fA~~~G~~~~~~~~l~T~~~~~~~~~~~~~~~~~~~----~~~~~~~~dTVGaVa~D~~G~~Aa 76 (204)
||++||+||+|+||++||+++||+.++|++|+|++++++|++|++......+ +......+||||+||+|.+||+||
T Consensus 114 me~t~hv~LvG~gA~~fA~~~G~~~~~~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dTVGaValD~~G~lAa 193 (313)
T PRK10226 114 MEQSPHVMMIGEGAENFAFAHGMERVSPEIFSTPLRYEQLLAARAEGATVLDHSGAPLDEKQKMGTVGAVALDLDGNLAA 193 (313)
T ss_pred HhcCCCeEEEcHHHHHHHHHcCCCcCCcccccCHHHHHHHHHHHhhcccccccccCccccCCCCCCEEEEEEeCCCCEEE
Confidence 7899999999999999999999999999999999999999988764311110 000113589999999999999999
Q ss_pred EecCCCCCCCccccccCCCCcCCceeeeCCeeEEEecCchhHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCC
Q psy5132 77 CTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSILRYCVAHRILHYIEQG-LSATEASQKALDGMRTRVGK 155 (204)
Q Consensus 77 atSTGG~~~K~~GRVGdspi~GaG~yAd~~~~a~s~TG~GE~iir~~lA~~i~~~l~~g-~~~~~A~~~~i~~~~~~~~~ 155 (204)
+|||||+++|+|||||||||||||+||||.++||||||+||+|||.++|++|+++|+.| ++|++|++.+|+++.+++++
T Consensus 194 aTSTGG~~~K~pGRVGDSpi~GAG~yAd~~~~A~s~TG~GE~iir~~~A~~v~~~m~~gg~~~~~A~~~~i~~~~~~~gg 273 (313)
T PRK10226 194 ATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFIRALAAYDIAALMDYGGLSLAEACERVVMEKLPALGG 273 (313)
T ss_pred EECCCCccCCCCCccCCCCCcCCeeeecCCceEEEeeccHHHHHHHhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999975 99999999999998888888
Q ss_pred ceeeEEecCCCcEEEEEcCCCCeeEEEeC-CeEEEEEec
Q psy5132 156 TAGAITVTKCGKVGVYFNSPKMAWAYIRG-TKLHYGIYP 193 (204)
Q Consensus 156 ~~GvI~v~~~G~~~~a~~t~~m~~a~~~~-~~~~~~~~~ 193 (204)
.+|+|+||++|+++++|||++|+|+|.+. +.+++.+++
T Consensus 274 ~gG~Iavd~~G~~~~~~nt~~M~~~~~~~~g~~~~~~~~ 312 (313)
T PRK10226 274 SGGLIAIDHEGNVALPFNTEGMYRAWGYAGDTPTTGIYR 312 (313)
T ss_pred ceEEEEEcCCCCEEEEeCCcccceEEEeCCCcEEEeecC
Confidence 89999999999999999999999999876 667777654
No 2
>PLN02689 Bifunctional isoaspartyl peptidase/L-asparaginase
Probab=100.00 E-value=2e-59 Score=414.42 Aligned_cols=189 Identities=37% Similarity=0.538 Sum_probs=168.3
Q ss_pred CCCCCCeEEecHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhcCCC-----CCCcc---------CCCCCCCceeEE
Q psy5132 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQD-----PNVTE---------IGGGGVGTVGAV 66 (204)
Q Consensus 1 me~t~h~lLvG~gA~~fA~~~G~~~~~~~~l~T~~~~~~~~~~~~~~~~-----~~~~~---------~~~~~~dTVGaV 66 (204)
||++||+||||+||++||+++|+|.++|++|+|++++++|++|++.... .+... .....+||||||
T Consensus 113 me~t~H~lLvG~GA~~fA~~~G~~~~~~~~l~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dTVGaV 192 (318)
T PLN02689 113 MEKTPHIYLAFDGAEAFARQQGVETVDNSYFITEENVERLKQAKEANSVQFDYRIPLDKPAKAAALAADGDAQPETVGCV 192 (318)
T ss_pred HccCCCEEEEChHHHHHHHHcCCCcCCcccccCHHHHHHHHHHHHhcccccccccCCCcccccccccccCCCCCCcEEEE
Confidence 7999999999999999999999999999999999999999999864310 00000 001268999999
Q ss_pred EEcCCCCEEEEecCCCCCCCccccccCCCCcCCceeeeCCeeEEEecCchhHHHHHHHHHHHHHHHH-cCCCHHHHHHHH
Q psy5132 67 AVDARGHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSILRYCVAHRILHYIE-QGLSATEASQKA 145 (204)
Q Consensus 67 a~D~~G~~AaatSTGG~~~K~~GRVGdspi~GaG~yAd~~~~a~s~TG~GE~iir~~lA~~i~~~l~-~g~~~~~A~~~~ 145 (204)
|+|.+||+|++|||||+++|+|||||||||||||+|||+. +||||||+||.|||.++|++|+++|+ .|++|++|++.+
T Consensus 193 alD~~G~lAaaTSTGG~~~K~pGRVGDSpiiGaG~yAd~~-~Avs~TG~GE~iir~~~A~~v~~~m~~~g~s~~~A~~~~ 271 (318)
T PLN02689 193 AVDSDGNCAAATSTGGLVNKMVGRIGDTPIIGAGTYANHL-CAVSATGKGEAIIRGTVARDVAAVMEYKGLPLQEAVDYV 271 (318)
T ss_pred EEeCCCCEEEEECCCCccCCCCcccCCCcccCCchhccCC-cEEeeecchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999875 89999999999999999999999999 799999999999
Q ss_pred HHHHHHHcCCceeeEEecCCCcEEEEEcCCCCeeEEEeC-CeEEEEEe
Q psy5132 146 LDGMRTRVGKTAGAITVTKCGKVGVYFNSPKMAWAYIRG-TKLHYGIY 192 (204)
Q Consensus 146 i~~~~~~~~~~~GvI~v~~~G~~~~a~~t~~m~~a~~~~-~~~~~~~~ 192 (204)
|+++..+ +.+|+|+||++|+++++|||++|+|||+.. +.+++.++
T Consensus 272 i~~~~~~--~~gG~Iavd~~G~~~~~~nt~~m~~a~~~~~g~~~~~~~ 317 (318)
T PLN02689 272 IKERLPE--GPAGLIAVSATGEVAMAFNTTGMFRACATEDGFMEVGIW 317 (318)
T ss_pred HHhhCcC--CceEEEEEcCCccEEEEeCCcCeEEEEEeCCCceEEeec
Confidence 9887654 668999999999999999999999999876 66677664
No 3
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=100.00 E-value=1.2e-57 Score=393.49 Aligned_cols=168 Identities=35% Similarity=0.654 Sum_probs=159.9
Q ss_pred CCCCCCeEEecHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCccCCCCCCCceeEEEEcCCCCEEEEecC
Q psy5132 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPNVTEIGGGGVGTVGAVAVDARGHMVSCTST 80 (204)
Q Consensus 1 me~t~h~lLvG~gA~~fA~~~G~~~~~~~~l~T~~~~~~~~~~~~~~~~~~~~~~~~~~~dTVGaVa~D~~G~~AaatST 80 (204)
||++||+||+|+||++||+++|++ +++|+|++++++|++|++.. ..+||||+||+|.+||+|++|||
T Consensus 91 me~t~h~~LvG~gA~~fA~~~G~~---~~~l~t~~~~~~~~~~~~~~----------~~~dTVGaValD~~G~laaatST 157 (263)
T cd04513 91 MEHTKHTLLVGEGATRFAVSMGFP---EENLLTERSRKAWKKWLEEN----------CNHDTIGMIALDANGNIAAGTST 157 (263)
T ss_pred HhhCCCeEEeCHHHHHHHHHcCCC---CCcCCCHHHHHHHHHHHhcC----------CCCCCEEEEEEeCCCCEEEEECC
Confidence 799999999999999999999997 68999999999999998654 26899999999999999999999
Q ss_pred CCCCCCccccccCCCCcCCceeeeCCeeEEEecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc---CCce
Q psy5132 81 GGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKALDGMRTRV---GKTA 157 (204)
Q Consensus 81 GG~~~K~~GRVGdspi~GaG~yAd~~~~a~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~~i~~~~~~~---~~~~ 157 (204)
||+++|+|||||||||||||+|||++++||||||+||+|||.++|++|+++|++|++|++|++++|+++.+++ ++.+
T Consensus 158 GG~~~K~pGRVGDspiiGaG~yAd~~~~a~s~TG~GE~iir~~~A~~v~~~m~~G~~~~~A~~~~i~~~~~~~~~~~~~g 237 (263)
T cd04513 158 SGAAFKIPGRVGDSPIPGAGAYADSEVGAAAATGDGEEMMRFLPSFQAVEYMRQGMSPKEACLEAIKRIAKHFDGPDFEG 237 (263)
T ss_pred CCccCccCCccCCCCCCCceeeecCCceEEEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcCCCcE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888 6779
Q ss_pred eeEEecCCCcEEEEEcCC-CCeeEE
Q psy5132 158 GAITVTKCGKVGVYFNSP-KMAWAY 181 (204)
Q Consensus 158 GvI~v~~~G~~~~a~~t~-~m~~a~ 181 (204)
|+|+||++|+++++||+. .|+|.+
T Consensus 238 g~Iavd~~G~~~~~~~~~~~~~~~v 262 (263)
T cd04513 238 AVVALNKKGEYGAACNGLTEFTYAV 262 (263)
T ss_pred EEEEEcCCCCEEEEEccCCCEEEEe
Confidence 999999999999999998 777764
No 4
>PLN02937 Putative isoaspartyl peptidase/L-asparaginase
Probab=100.00 E-value=2.3e-55 Score=399.79 Aligned_cols=200 Identities=23% Similarity=0.363 Sum_probs=170.2
Q ss_pred CCCCCCeEEecHHHHHHHHHcCC---CCC--CCCCCCCHHHHHHHHHHHhcCCC---CC----------------Cc---
Q psy5132 1 MEKTPHGILSGDGANEFGRRMGL---PQI--PDSELITENAKHALEKFLCEGQD---PN----------------VT--- 53 (204)
Q Consensus 1 me~t~h~lLvG~gA~~fA~~~G~---~~~--~~~~l~T~~~~~~~~~~~~~~~~---~~----------------~~--- 53 (204)
|+++||+||||+||++||+++|| +.+ +|++|+|++++++|++|++.... .. ..
T Consensus 128 l~~t~HvlLvGeGA~~fA~~~G~~~~e~~~~~~~~L~T~~s~~~w~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (414)
T PLN02937 128 LGRIPPMFLVGEGARQWAKSKGIDLPETVEEAEKWLVTERAKEQWKKYKTMLASAIAKSSCDSQSTSKLSELEAPRSNPS 207 (414)
T ss_pred cCCCCCeEEECHHHHHHHHHcCCCccccccCCcccccCHHHHHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence 57999999999999999999999 444 78999999999999999875310 00 00
Q ss_pred ------------c-CCCCCCCceeEEEEcCCCCEEEEecCCCCCCCccccccCCCCcCCceeeeCC-------eeEEEec
Q psy5132 54 ------------E-IGGGGVGTVGAVAVDARGHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDN-------IASVSTT 113 (204)
Q Consensus 54 ------------~-~~~~~~dTVGaVa~D~~G~~AaatSTGG~~~K~~GRVGdspi~GaG~yAd~~-------~~a~s~T 113 (204)
. .....+||||+||+|.+|||||+|||||+++|+|||||||||||||+||||+ ++|||||
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~dTVGaValD~~G~iAAaTSTGG~~~K~pGRVGDSPIiGAG~yAdn~~~~g~~~~~a~saT 287 (414)
T PLN02937 208 NGTGGGQSSMCTASDEDCIMDTVGVICVDSEGNIASGASSGGIAMKVSGRVGLAAMYGSGCWASSKGPFGAPFIVGCCVS 287 (414)
T ss_pred cccccccccccccccCCCCCCCEEEEEEeCCCCEEEEECCCccccCCCCccCCCCCCCceeeecCccccccCceEEEeee
Confidence 0 0112679999999999999999999999999999999999999999999998 7999999
Q ss_pred CchhHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHH-----cCCceeeEEecCCC--------------cEEEEEc
Q psy5132 114 GHGDSILRYCVAHRILHYIE-QGLSATEASQKALDGMRTR-----VGKTAGAITVTKCG--------------KVGVYFN 173 (204)
Q Consensus 114 G~GE~iir~~lA~~i~~~l~-~g~~~~~A~~~~i~~~~~~-----~~~~~GvI~v~~~G--------------~~~~a~~ 173 (204)
|+||+|||+++|++|+.+|+ .|++|++|++++|+++.++ +++.+|||+||++| +++++|+
T Consensus 288 G~GE~iiR~~~A~~~~~~~~~~g~~p~~Aa~~~i~~~~~~~~~~~~~~~gGvI~vd~~g~~~~~~nt~~m~~~e~~~a~~ 367 (414)
T PLN02937 288 GAGEYLMRGFAARECCVSSSLSQAGPASACMKVLRSVIQGSSAKTTDKDAGILLVQADASVMAPGNSPSLKAVEIAAAYS 367 (414)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccccccCCceEEEEEeCCCCeecccCCcccccceeeeeec
Confidence 99999999999999988886 6899999999999998775 67889999999974 7788888
Q ss_pred CCCCeeEEEeC--CeEEEEEecCCCcccc
Q psy5132 174 SPKMAWAYIRG--TKLHYGIYPGQDIEED 200 (204)
Q Consensus 174 t~~m~~a~~~~--~~~~~~~~~~~~~~~~ 200 (204)
|.+|.++|+.. .++++.+.+.-..+.+
T Consensus 368 ~~sf~~gy~~~~~~~~k~~~~~~~~~~~~ 396 (414)
T PLN02937 368 SLSFGIGYFGSSMERPKVSILRSTKQQSK 396 (414)
T ss_pred cCcceEEEecCcCcCCeEEEecCcccccc
Confidence 88888999976 5777888776544433
No 5
>cd04702 ASRGL1_like ASRGL1_like domains, a subfamily of the L-Asparaginase type 2-like enzymes. The wider family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue. ASRGL1, or asparaginase-like 1, has been cloned from mammalian testis cDNA libraries. It has been identified as a sperm antigen that may induce the production of autoantibodies following obstruction of the male reproductive tract, e.g. vasectomy.
Probab=100.00 E-value=6.8e-54 Score=368.77 Aligned_cols=154 Identities=55% Similarity=0.895 Sum_probs=149.2
Q ss_pred CCCCCCeEEecHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCccCCCCCCCceeEEEEcCCCCEEEEecC
Q psy5132 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPNVTEIGGGGVGTVGAVAVDARGHMVSCTST 80 (204)
Q Consensus 1 me~t~h~lLvG~gA~~fA~~~G~~~~~~~~l~T~~~~~~~~~~~~~~~~~~~~~~~~~~~dTVGaVa~D~~G~~AaatST 80 (204)
||++||+||+|+||++||+++| +||||+||+|.+||+|++|||
T Consensus 107 me~t~H~lLvG~gA~~fA~~~G-------------------------------------~dTVGavalD~~G~laaatST 149 (261)
T cd04702 107 MEKTDHVLLVGEGAERFAREMG-------------------------------------LGTVGAVALDASGNIAAATST 149 (261)
T ss_pred HccCCCEEEEChHHHHHHHHcC-------------------------------------CCceEEEEEeCCCCEEEEECC
Confidence 7899999999999999999998 389999999999999999999
Q ss_pred CCCCCCccccccCCCCcCCceeeeCCeeEEEecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCceeeE
Q psy5132 81 GGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKALDGMRTRVGKTAGAI 160 (204)
Q Consensus 81 GG~~~K~~GRVGdspi~GaG~yAd~~~~a~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~~i~~~~~~~~~~~GvI 160 (204)
||+++|+|||||||||||||+||||+++||||||+||+|||.++|++++++|+.|++|++|++.+|+++.+++++.+|+|
T Consensus 150 gG~~~K~~GRVGDspi~GaG~yAd~~~ga~s~TG~GE~iir~~~a~~v~~~m~~g~s~~eA~~~~i~~~~~~~~g~gG~I 229 (261)
T cd04702 150 GGTTNKLVGRVGDTPLIGCGTYADNKVGAVSTTGHGESIMKVVLARLILDHMEQGGSAQEAADKAIEYMTERVKGTGGAI 229 (261)
T ss_pred CCccCCCCCcCCCCCcCCCceeecCCceEEEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888899999
Q ss_pred EecCCCcEEEEEcCCCCeeEEEeCCeEEEEE
Q psy5132 161 TVTKCGKVGVYFNSPKMAWAYIRGTKLHYGI 191 (204)
Q Consensus 161 ~v~~~G~~~~a~~t~~m~~a~~~~~~~~~~~ 191 (204)
+||++|+++++|||+.|+|+|+..+.+++++
T Consensus 230 avd~~G~~~~a~nt~~m~~a~~~~~~~~~~~ 260 (261)
T cd04702 230 VLDSSGEVGAAFNSKRMAWAYAKDGQLHYGI 260 (261)
T ss_pred EEeCCCCEEEEeCCCCceEEEEeCCeeEEee
Confidence 9999999999999999999999888777775
No 6
>COG1446 Asparaginase [Amino acid transport and metabolism]
Probab=100.00 E-value=7.6e-54 Score=372.28 Aligned_cols=184 Identities=39% Similarity=0.598 Sum_probs=166.3
Q ss_pred CCCCCCeEEecHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhcCCCC-------CC-ccCCCCCCCceeEEEEcCCC
Q psy5132 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDP-------NV-TEIGGGGVGTVGAVAVDARG 72 (204)
Q Consensus 1 me~t~h~lLvG~gA~~fA~~~G~~~~~~~~l~T~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~dTVGaVa~D~~G 72 (204)
||++||+||+|+||.+||+++|+|. +.+++|+++|+.|.++++...+. .. .+.+...|||||+||+|.+|
T Consensus 109 m~~t~hVll~G~gA~~fA~~~G~p~--~~~~~t~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gTVGaVAlD~~G 186 (307)
T COG1446 109 MEKTPHVLLVGEGAVAFAREMGLPR--EYDPFTEERRAEWLQAERDAKKQVLDHSKTYEEPEDPDSKHGTVGAVALDADG 186 (307)
T ss_pred HhCCCeEEEeccCHHHHHHHcCCCc--CCCccchHHHHHHHHHhhhhhhcccchhhhcccccCCcccCCceeEEEEeCCC
Confidence 8999999999999999999999998 56677888999999988764211 00 11122579999999999999
Q ss_pred CEEEEecCCCCCCCccccccCCCCcCCceeeeCCeeEEEecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy5132 73 HMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKALDGMRTR 152 (204)
Q Consensus 73 ~~AaatSTGG~~~K~~GRVGdspi~GaG~yAd~~~~a~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~~i~~~~~~ 152 (204)
|||++|||||+++|+|||||||||||+||||++..+|+||||.||.|||.++|++|+.+|+.|+++++|+++++.+..+.
T Consensus 187 ~lAaaTSTGG~~~k~~GRVGDSPipGAG~ya~~~~~AvS~TG~GE~~ir~~~a~~i~~~~~~g~~l~~A~~~vv~~~~~~ 266 (307)
T COG1446 187 NLAAATSTGGVFLKRPGRVGDSPIPGAGFYAENGAGAVSCTGVGEVIIRNALAFDIAARVRYGLSLDAACERVVEEALKA 266 (307)
T ss_pred cEEEEEccCccccCCCCccCCCCCCCCceeecCCcceeeccchhHHHHHHhHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999977999999999999999999999999999999999999999998888
Q ss_pred cCCceeeEEecCCCcEEEEEcCCCCeeEEEeCCe
Q psy5132 153 VGKTAGAITVTKCGKVGVYFNSPKMAWAYIRGTK 186 (204)
Q Consensus 153 ~~~~~GvI~v~~~G~~~~a~~t~~m~~a~~~~~~ 186 (204)
+++.+|+|+||++|+++++|||+.|.+||++.+.
T Consensus 267 ~g~~~G~IavD~~G~v~~~~n~~gm~~a~~~~~~ 300 (307)
T COG1446 267 LGGDGGLIAVDAKGNVAAAFNTKGMLRAWIKGGG 300 (307)
T ss_pred cCCcCceEEEcCCCCeeecccchhhhhheecCCC
Confidence 8888999999999999999999999999998743
No 7
>KOG1592|consensus
Probab=100.00 E-value=1.5e-52 Score=363.79 Aligned_cols=192 Identities=39% Similarity=0.605 Sum_probs=176.0
Q ss_pred CCCCCeEEecHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhcCCCC----------CCccCCCCCCCceeEEEEcCC
Q psy5132 2 EKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDP----------NVTEIGGGGVGTVGAVAVDAR 71 (204)
Q Consensus 2 e~t~h~lLvG~gA~~fA~~~G~~~~~~~~l~T~~~~~~~~~~~~~~~~~----------~~~~~~~~~~dTVGaVa~D~~ 71 (204)
+++||+||+|+||++||+++|++.+||+.|||+++|.+|++||+.++.. +++..+ ...||||+||+|..
T Consensus 118 griPp~~Lvg~GAe~~A~~~G~~~v~~~~lvTe~~~~~~~~~Ke~~~~~~~~~~~~~~~~~~~~~-~~~dTVGaV~vD~~ 196 (326)
T KOG1592|consen 118 GRIPPCFLVGEGAEKFALAHGVETVPPQHLVTERNRFTLKKFKEFLQQVPAPFFPRTEVPETCFD-SSLDTVGAVCVDGE 196 (326)
T ss_pred cCCCceEEechHHHHHHHHcCCcccCCcceecHhHHHHHhhhHHHHhccccccccccccCCcccc-cccCcceEEEEeCC
Confidence 5699999999999999999999999999999999999999999876311 111112 36899999999999
Q ss_pred CCEEEEecCCCCCCCccccccCCCCcCCceeeeC---CeeEEEecCchhHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHH
Q psy5132 72 GHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDD---NIASVSTTGHGDSILRYCVAHRILHYIE-QGLSATEASQKALD 147 (204)
Q Consensus 72 G~~AaatSTGG~~~K~~GRVGdspi~GaG~yAd~---~~~a~s~TG~GE~iir~~lA~~i~~~l~-~g~~~~~A~~~~i~ 147 (204)
||+|++|||||+.+|+||||||||+|||||||+| ..+|||+||+||+|||++|||+|+..|+ +|.++++|++.++.
T Consensus 197 Gnia~gtSSGGi~lK~~GRiG~sp~yGaG~wA~~~~~~~~avstTG~GE~l~r~~lAR~~~~~l~~~gl~~~~a~~~~~~ 276 (326)
T KOG1592|consen 197 GNIAAGTSSGGIVLKMPGRIGDSPIYGAGTWAENTSERTCAVSTTGHGESLMRTNLAREISTLLEYQGLSLEEAADYVLR 276 (326)
T ss_pred CCEEEEeccCCeeccccCcccCCcccCccccccCCCcceEEEecCCCcHHHHHHHHHHHHHHHHHhcccCHHHHHHhhhh
Confidence 9999999999999999999999999999999998 7899999999999999999999999999 89999999999999
Q ss_pred HHHHHcCCceeeEEecCCCcEEEEEcCCCCeeEEEeC-CeEEEEEecC
Q psy5132 148 GMRTRVGKTAGAITVTKCGKVGVYFNSPKMAWAYIRG-TKLHYGIYPG 194 (204)
Q Consensus 148 ~~~~~~~~~~GvI~v~~~G~~~~a~~t~~m~~a~~~~-~~~~~~~~~~ 194 (204)
.+..+.++++|+|+|..+|.+.+.||+..|+|+|.++ +...+++++.
T Consensus 277 ~~~~~~dg~~Gli~v~~~~~~~~~f~s~~m~w~~~t~~Gy~~~~i~~~ 324 (326)
T KOG1592|consen 277 PLLAREDGTGGLIVVSASGDVVAPFTSTGMAWAYATEDGYMEYGIEKP 324 (326)
T ss_pred hhhhhccCcccEEEEEecCCeecccCcchhhhhhhcccceeeecccCC
Confidence 9988888999999999999999999999999999985 7878887654
No 8
>cd04512 Ntn_Asparaginase_2_like Ntn-hydrolase superfamily, L-Asparaginase type 2-like enzymes. This family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoprotein. Taspase1 catalyzes the cleavage of the Mix Lineage Leukemia (MLL) nuclear protein and transcription factor TFIIA. L-Asparaginase type 2 hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzymes of this family undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=100.00 E-value=3.9e-52 Score=356.39 Aligned_cols=145 Identities=45% Similarity=0.758 Sum_probs=141.0
Q ss_pred CCCCCCeEEecHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCccCCCCCCCceeEEEEcCCCCEEEEecC
Q psy5132 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPNVTEIGGGGVGTVGAVAVDARGHMVSCTST 80 (204)
Q Consensus 1 me~t~h~lLvG~gA~~fA~~~G~~~~~~~~l~T~~~~~~~~~~~~~~~~~~~~~~~~~~~dTVGaVa~D~~G~~AaatST 80 (204)
||++||+||+|+||++||+++| +||||+||+|.+||+|++|||
T Consensus 104 me~t~h~~LvG~gA~~fA~~~G-------------------------------------~dTVGavalD~~G~~aaatST 146 (248)
T cd04512 104 MEKTPHVLLVGEGALEFALDHG-------------------------------------LDTVGAVALDGQGNLAAATST 146 (248)
T ss_pred HhcCCCeEEEChHHHHHHHHhC-------------------------------------cCcEEEEEEeCCCCEEEEECC
Confidence 7899999999999999999998 389999999999999999999
Q ss_pred CCCCCCccccccCCCCcCCceeeeCCeeEEEecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCceeeE
Q psy5132 81 GGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKALDGMRTRVGKTAGAI 160 (204)
Q Consensus 81 GG~~~K~~GRVGdspi~GaG~yAd~~~~a~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~~i~~~~~~~~~~~GvI 160 (204)
||+++|+|||||||||||||+|||++.+||||||+||+|||.++|++|+++|+.|++|++|++++|+++.++.++.+|+|
T Consensus 147 GG~~~K~pGRVGDspi~GaG~yAd~~~~a~s~TG~GE~iir~~~a~~v~~~~~~g~~~~~A~~~~i~~~~~~~~~~~G~I 226 (248)
T cd04512 147 GGMSLKLPGRVGDSPIIGAGFYADNEAGAASTTGHGEAIIRTVLARRVVELMEQGMAAQAAAETAVEELGSLKGGQGGVI 226 (248)
T ss_pred CcccCCCCCccCCCCccCceeeecCCcEEEEeeecHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888889999
Q ss_pred EecCCCcEEEEEcCCCCeeEEE
Q psy5132 161 TVTKCGKVGVYFNSPKMAWAYI 182 (204)
Q Consensus 161 ~v~~~G~~~~a~~t~~m~~a~~ 182 (204)
+||++|+++++|||++|+|+|+
T Consensus 227 a~d~~G~~~~a~~~~~m~~a~~ 248 (248)
T cd04512 227 AVDSKGEFGAAFNTAGMTVAYH 248 (248)
T ss_pred EEeCCCCEEEEECcCCceEEeC
Confidence 9999999999999999999984
No 9
>cd04701 Asparaginase_2 L-Asparaginase type 2. L-Asparaginase hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzyme undergoes an autoproteolytic cleavage into alpha and beta subunits to expose a threonine residue which becomes the N-terminal residue of the beta subunit. The threonine residue plays a central role in hydrolase activity. Some asparaginases can also hydrolyze L-glutamine and are termed glutaminase-asparaginase. This is a member of the Ntn-hydrolase superfamily.
Probab=100.00 E-value=6.6e-52 Score=357.31 Aligned_cols=149 Identities=42% Similarity=0.689 Sum_probs=143.2
Q ss_pred CCCCCCeEEecHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCccCCCCCCCceeEEEEcCCCCEEEEecC
Q psy5132 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPNVTEIGGGGVGTVGAVAVDARGHMVSCTST 80 (204)
Q Consensus 1 me~t~h~lLvG~gA~~fA~~~G~~~~~~~~l~T~~~~~~~~~~~~~~~~~~~~~~~~~~~dTVGaVa~D~~G~~AaatST 80 (204)
||++||+||+|+||++||+++| . +||||+||+|.+|++|++|||
T Consensus 110 me~~~h~~LvG~gA~~fA~~~G------------------------~------------~dTVGavalD~~G~~aaatST 153 (260)
T cd04701 110 MEKTPHVLLAGEGAEAFAREQG------------------------K------------HGTVGAVALDSHGNLAAATST 153 (260)
T ss_pred HhcCCCeEEECHHHHHHHHHcC------------------------C------------CCcEEEEEEeCCCCEEEEECC
Confidence 7899999999999999999988 1 599999999999999999999
Q ss_pred CCCCCCccccccCCCCcCCceeeeCCeeEEEecCchhHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCceee
Q psy5132 81 GGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSILRYCVAHRILHYIEQ-GLSATEASQKALDGMRTRVGKTAGA 159 (204)
Q Consensus 81 GG~~~K~~GRVGdspi~GaG~yAd~~~~a~s~TG~GE~iir~~lA~~i~~~l~~-g~~~~~A~~~~i~~~~~~~~~~~Gv 159 (204)
||+++|+|||||||||||||+|||++.+||||||+||+|||.++|++|+++|+. |++|++|++++|+++.+++++++|+
T Consensus 154 GG~~~K~pGRVGDSpi~GaG~yAd~~~~avs~TG~GE~iir~~~A~~v~~~~~~~g~~~~~A~~~~i~~~~~~~~~~~Gi 233 (260)
T cd04701 154 GGLTNKRPGRIGDTPIIGAGTYADNWSVAVSCTGTGEYFIRVAAAHDVAARVRYAGLSLADAAEAVIGEVLETLGGDGGL 233 (260)
T ss_pred CcccCCCCCccCCCCCCCceeeecCCcEEEEeecchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCceEE
Confidence 999999999999999999999999999999999999999999999999999996 8999999999999999888889999
Q ss_pred EEecCCCcEEEEEcCCCCeeEEEeCC
Q psy5132 160 ITVTKCGKVGVYFNSPKMAWAYIRGT 185 (204)
Q Consensus 160 I~v~~~G~~~~a~~t~~m~~a~~~~~ 185 (204)
|+||++|+++++|||++|+|+|+.++
T Consensus 234 Iaid~~G~~~~~~nt~~m~~a~~~~~ 259 (260)
T cd04701 234 IAVDARGNVAMPFNTGGMYRGWISED 259 (260)
T ss_pred EEEcCCccEEEEeCCCccEEEEEcCC
Confidence 99999999999999999999998753
No 10
>cd04703 Asparaginase_2_like A subfamily of the L-Asparaginase type 2-like enzymes. The wider family, a member of the Ntn-hydrolase superfamily, includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=100.00 E-value=9.2e-52 Score=353.51 Aligned_cols=147 Identities=40% Similarity=0.619 Sum_probs=140.7
Q ss_pred CCCCCCeEEecHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCccCCCCCCCceeEEEEcCCCCEEEEecC
Q psy5132 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPNVTEIGGGGVGTVGAVAVDARGHMVSCTST 80 (204)
Q Consensus 1 me~t~h~lLvG~gA~~fA~~~G~~~~~~~~l~T~~~~~~~~~~~~~~~~~~~~~~~~~~~dTVGaVa~D~~G~~AaatST 80 (204)
||++||+||+|+||++||+++|++ .. ..+||||+||+|. ||+|++|||
T Consensus 99 me~t~h~lLvG~gA~~fA~~~G~~---------------------~~----------~~~dTVG~valD~-G~laaatST 146 (246)
T cd04703 99 MEETPHVLLAGDGAVKFAALTGVE---------------------DP----------GGHDTVGAVARDG-GRLAAATST 146 (246)
T ss_pred HhcCCCeEEECHHHHHHHHHhCCC---------------------CC----------CCCCCEEEEEEEC-CCEEEEECC
Confidence 789999999999999999999997 01 2589999999999 999999999
Q ss_pred CCCCCCccccccCCCCcCCceeeeCCeeEEEecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCceeeE
Q psy5132 81 GGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKALDGMRTRVGKTAGAI 160 (204)
Q Consensus 81 GG~~~K~~GRVGdspi~GaG~yAd~~~~a~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~~i~~~~~~~~~~~GvI 160 (204)
||+++|+|||||||||||||+|||+. +||||||+||+|||+++|++++++|++|++|++|++++|+++.++++..+|+|
T Consensus 147 GG~~~K~pGRVGDspi~GaG~yAd~~-gavs~TG~GE~iir~~~A~~v~~~~~~g~~~~~A~~~~i~~~~~~~~~~~G~I 225 (246)
T cd04703 147 GGRWPALAGRVGDVPQPGAGFYAGPR-GAVSATGAGEAIARNTLARSAYNRLGTGDPAQDAAKAAISRFSEATGVTAGVI 225 (246)
T ss_pred CcccCCCCCccCCCCCCCccccccCC-ceEEeeecHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCceEEE
Confidence 99999999999999999999999986 99999999999999999999999999999999999999999998888889999
Q ss_pred EecCCCcEEEEEcCCCCeeEE
Q psy5132 161 TVTKCGKVGVYFNSPKMAWAY 181 (204)
Q Consensus 161 ~v~~~G~~~~a~~t~~m~~a~ 181 (204)
+||+ |+++++|||++|+|+|
T Consensus 226 avd~-G~~~~~~~s~~m~~a~ 245 (246)
T cd04703 226 AVDP-EEEGAAYSSAAMQTAV 245 (246)
T ss_pred EECC-CceEEEeCchhhhhhc
Confidence 9999 9999999999999997
No 11
>PF01112 Asparaginase_2: Asparaginase; InterPro: IPR000246 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Threonine peptidases are characterised by a threonine nucleophile at the N terminus of the mature enzyme. The threonine peptidases belong to clan PB or are unassigned, clan T-. The type example for this clan is the archaean proteasome beta component of Thermoplasma acidophilum. This group of sequences have a signature that places them in MEROPS peptidase family T2 (clan PB(T)). The glycosylasparaginases (3.5.1.26 from EC) are threonine peptidases. Also in this family is L-asparaginase (3.5.1.1 from EC), which catalyses the following reaction: L-asparagine + H2O = L-aspartate + NH3 Glycosylasparaginase catalyses: N4-(beta-N-acetyl-D-glucosaminyl)-L-asparagine + H(2)O = N-acetyl-beta-glucosaminylamine + L-aspartate cleaving the GlcNAc-Asn bond that links oligosaccharides to asparagine in N-linked glycoproteins. The enzyme is composed of two non-identical alpha/beta subunits joined by strong non-covalent forces and has one glycosylation site located in the alpha subunit [] and plays a major role in the degradation of glycoproteins.; GO: 0016787 hydrolase activity; PDB: 1APY_D 1APZ_C 2GEZ_E 2GL9_B 2GAC_D 2GAW_C 1AYY_A 1P4V_C 9GAF_A 1P4K_A ....
Probab=100.00 E-value=9.3e-52 Score=366.68 Aligned_cols=181 Identities=40% Similarity=0.650 Sum_probs=141.4
Q ss_pred CCCCCCeEEecHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhcCC---CCCCc--------cCCCCCCCceeEEEEc
Q psy5132 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQ---DPNVT--------EIGGGGVGTVGAVAVD 69 (204)
Q Consensus 1 me~t~h~lLvG~gA~~fA~~~G~~~~~~~~l~T~~~~~~~~~~~~~~~---~~~~~--------~~~~~~~dTVGaVa~D 69 (204)
|+++||+||+|+||++||+++|++.+++.++.|+++++.|++.+++.. ..... +.....+|||||||+|
T Consensus 112 ~~~~~h~lLvG~gA~~fA~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~~dTVGaVa~D 191 (319)
T PF01112_consen 112 MEQTPHVLLVGEGAEKFAKENGFELVDPESLITERRWEKWKKAKEQKRLIPDPSKSQPPVQDYLDEEDSGHDTVGAVALD 191 (319)
T ss_dssp HHHSS-SEEEHHHHHHHHHHTT--B--GGGHHHHHHHHHHHHHHHHHCHBSSTTT-------SEEBTTCTC--EEEEEEE
T ss_pred HHhcccceecchHHHHHHHhcCCcccccccchhhHHHHHHHHhhhhccccccccccccccccccccccccCCCeeEEEEE
Confidence 678999999999999999999999999998989888888888766431 00000 0111259999999999
Q ss_pred CCCCEEEEecCCCCCCCccccccCCCCcCCceeeeCCeeEEEecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy5132 70 ARGHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKALDGM 149 (204)
Q Consensus 70 ~~G~~AaatSTGG~~~K~~GRVGdspi~GaG~yAd~~~~a~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~~i~~~ 149 (204)
.+|++||+|||||+++|+|||||||||||||+|||+.++ |||||+||+|||.+||++|+++|+.|+ +++++.+++.+
T Consensus 192 ~~G~iaaatSTGG~~~K~pGRVGdspi~GaG~yAd~~~g-vs~TG~GE~iir~~lA~~i~~~~~~g~--~~a~~aa~~~i 268 (319)
T PF01112_consen 192 TNGNIAAATSTGGIFFKLPGRVGDSPIIGAGFYADNEVG-VSCTGHGEDIIRTLLARRIVERMRDGM--QSAAEAAIKRI 268 (319)
T ss_dssp TTS-EEEEEEEE-STTB-TTEE-STTSTTTSEEEETTTE-EEEEE-HHHHHHTTHHHHHHHHHHTT---HHHHHHHHHHH
T ss_pred CCCCEEEEecCCCccceecccccceeecChhheeecccc-eeccCCHHHHHHhhHHHHHHHHhhhcc--HHHHHHHHHHH
Confidence 999999999999999999999999999999999999976 999999999999999999999999987 65667777666
Q ss_pred HHHcC-CceeeEEecCCCcEEEEEcCCCCeeEEEeC
Q psy5132 150 RTRVG-KTAGAITVTKCGKVGVYFNSPKMAWAYIRG 184 (204)
Q Consensus 150 ~~~~~-~~~GvI~v~~~G~~~~a~~t~~m~~a~~~~ 184 (204)
.++++ ..+|+|+||++|+++++|||+.|++.|..+
T Consensus 269 ~~~~~~~~~GvIav~~~G~~~~~~n~~~m~~~~~~~ 304 (319)
T PF01112_consen 269 MEKFPRGTGGVIAVDKKGNIGIAFNSPGMFRYYAVQ 304 (319)
T ss_dssp HHHHHCTSEEEEEEETTS-EEEEESSSCEEEEEEEE
T ss_pred HHhCCCCceEEEEEcCCCCEEEEEecCcceeeEEec
Confidence 66543 679999999999999999999999755543
No 12
>cd04514 Taspase1_like Taspase1_like domains; Taspase1 catalyzes the cleavage of the mix lineage leukemia (MLL) nuclear protein and transcription factor TFIIA. Taspase1 is a threonine aspartase, a member of the Ntn hydrolase superfamily and the type 2 asparaginase family. A threonine residue acts as the active site nucleophile in both endopeptidease and protease activities to cleave polypeptide substrates after an aspartate residue. The Taspase1 proenzyme undergoes autoproteolysis into alpha and beta subunits. The N-terminal residue of the beta subunit is a threonine which is the active catalytic residue. The active enzyme is a heterotetramer.
Probab=100.00 E-value=1.1e-48 Score=343.96 Aligned_cols=155 Identities=30% Similarity=0.451 Sum_probs=142.8
Q ss_pred CCCCeEEecHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCccCCCCCCCceeEEEEcCCCCEEEEecCCC
Q psy5132 3 KTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPNVTEIGGGGVGTVGAVAVDARGHMVSCTSTGG 82 (204)
Q Consensus 3 ~t~h~lLvG~gA~~fA~~~G~~~~~~~~l~T~~~~~~~~~~~~~~~~~~~~~~~~~~~dTVGaVa~D~~G~~AaatSTGG 82 (204)
++||+||+|+||++||+++|+ +|||||||+|.+||+|++|||||
T Consensus 118 ~~~h~~LvG~gA~~fA~~~G~------------------------------------~dTVGaValD~~G~~aaatSTGG 161 (303)
T cd04514 118 RIPPDFLVGEGARQWAKSHGI------------------------------------LDTVGAVCVDKEGNIAAGVSSGG 161 (303)
T ss_pred CCCceEEEcHHHHHHHHHhCC------------------------------------CCCEEEEEEeCCCCEEEEECCCc
Confidence 458999999999999999998 38999999999999999999999
Q ss_pred CCCCccccccCCCCcCCceeeeCCe------eEEEecCchhHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHH---H
Q psy5132 83 ITGKMKGRVGDTPIPGSGGYCDDNI------ASVSTTGHGDSILRYCVAHRILHYIEQG-LSATEASQKALDGMRT---R 152 (204)
Q Consensus 83 ~~~K~~GRVGdspi~GaG~yAd~~~------~a~s~TG~GE~iir~~lA~~i~~~l~~g-~~~~~A~~~~i~~~~~---~ 152 (204)
+++|+|||||||||||||+|||+.. +||||||+||+|||.++|++|+++|+.+ +++++|++.+|.++.. +
T Consensus 162 ~~~K~pGRVGDspi~GaG~yAd~~~~~~~~~~a~s~TG~GE~iir~~~A~~v~~~~~~~~~~~~~A~~~~i~~~~~~~~~ 241 (303)
T cd04514 162 IALKHPGRVGQAATYGCGCWASKGDPFTPTSVAVSTSGCGEHLIRTQLARECAERLYLSDCSLEQSLQKSFQEKFFNSPE 241 (303)
T ss_pred ccCCCCCccCCcCcCCcEEEeccCCcccCceEEEEeeccHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999976 8999999999999999999999999986 4999999999988764 3
Q ss_pred cCCceeeEEecC-----CCcEEEEEcCCCCeeEEEeCCeEEEEEec
Q psy5132 153 VGKTAGAITVTK-----CGKVGVYFNSPKMAWAYIRGTKLHYGIYP 193 (204)
Q Consensus 153 ~~~~~GvI~v~~-----~G~~~~a~~t~~m~~a~~~~~~~~~~~~~ 193 (204)
+++++|+|+||+ +|+++++|||++|+|||+..+++++.+.+
T Consensus 242 ~~~~~G~I~v~~~~~~~~g~~~~~~nt~~M~~a~~~~~~p~~~~s~ 287 (303)
T cd04514 242 LKKLAGAIVVRAEVKTGNVEILWGHTTPSMCVGYMSGQKPKTKISR 287 (303)
T ss_pred cCCceEEEEEEeccccCcEEEEEEeCCchheeeEEcCCCCeeEEec
Confidence 568899999999 99999999999999999987666655544
No 13
>KOG1593|consensus
Probab=100.00 E-value=7.7e-43 Score=298.30 Aligned_cols=179 Identities=30% Similarity=0.532 Sum_probs=160.3
Q ss_pred CCCCCCeEEecHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHHhcCC-----CC--CC---------------------
Q psy5132 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQ-----DP--NV--------------------- 52 (204)
Q Consensus 1 me~t~h~lLvG~gA~~fA~~~G~~~~~~~~l~T~~~~~~~~~~~~~~~-----~~--~~--------------------- 52 (204)
||.|.|.|||||+|..||..+||+. ++|.||++++.|.+|+++.. +| ++
T Consensus 119 leht~HTlLvGe~At~FA~smGf~~---e~Lst~es~~~~s~W~~~nCQPNfwkNV~PDP~~sCGPYkp~~~~~~~~~~~ 195 (349)
T KOG1593|consen 119 LEHTQHTLLVGESATAFANSMGFKE---EDLSTEESKSWWSDWKAENCQPNFWKNVHPDPSSSCGPYKPNKLMRWDSLVN 195 (349)
T ss_pred HhhhheeeeecccHHHHHHhcCCCc---cccCCHHHHHHHHHHHHhcCCcchhcccCCCccccCCCCCCCcccccccccc
Confidence 7899999999999999999999984 89999999999999998662 11 00
Q ss_pred -c---cCCCCCCCceeEEEEcCCCCEEEEecCCCCCCCccccccCCCCcCCceeeeCCeeEEEecCchhHHHHHHHHHHH
Q psy5132 53 -T---EIGGGGVGTVGAVAVDARGHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSILRYCVAHRI 128 (204)
Q Consensus 53 -~---~~~~~~~dTVGaVa~D~~G~~AaatSTGG~~~K~~GRVGdspi~GaG~yAd~~~~a~s~TG~GE~iir~~lA~~i 128 (204)
+ ......|||+|.|++|..||++++|||.|..+|+||||||+||||+|.||||++||+.+||+|+.+||+++++.+
T Consensus 196 ~s~e~~vg~~nHDTIgM~vid~eghi~aGTStNGar~kipGRVGDspIpGagAYAddevGaa~aTGdGDvmMRFLPs~~a 275 (349)
T KOG1593|consen 196 QSDEYLVGPTNHDTIGMVVIDTEGHIAAGTSTNGARFKIPGRVGDSPIPGAGAYADDEVGAAAATGDGDVMMRFLPSYQA 275 (349)
T ss_pred cccccccCCCCCCeeeEEEEeccCceeecccCCCceeecCCccCCCCCCCccccccccccceeecCCchhHHHhhhHHHH
Confidence 0 011247999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCc-eeeEEecCCCcEEEEEcCCCCeeEEE
Q psy5132 129 LHYIEQGLSATEASQKALDGMRTRVGKT-AGAITVTKCGKVGVYFNSPKMAWAYI 182 (204)
Q Consensus 129 ~~~l~~g~~~~~A~~~~i~~~~~~~~~~-~GvI~v~~~G~~~~a~~t~~m~~a~~ 182 (204)
++.||.|+.|.+|++++|.++.++++.+ +.||++|+.|.++.+|+-.---|+|+
T Consensus 276 Ve~Mr~G~~P~eAa~~~i~RI~khfp~F~gAvia~n~~G~ygaaC~g~~~~F~ym 330 (349)
T KOG1593|consen 276 VEQMRAGKKPAEAAQKAISRILKHFPDFSGAVIAANVLGSYGAACYGINNKFGYM 330 (349)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHhCccceeeEEEEeccCchhhhhcccccceeeE
Confidence 9999999999999999999999999988 66899999999999987763345555
No 14
>PF06267 DUF1028: Family of unknown function (DUF1028); InterPro: IPR010430 This is a family of bacterial and archaeal proteins with unknown function.; PDB: 2IMH_A.
Probab=91.42 E-value=1.2 Score=37.41 Aligned_cols=102 Identities=23% Similarity=0.297 Sum_probs=57.9
Q ss_pred ceeEEEEcCC-CCEEEEecCCCCCCCccccccCCCCcCCceeeeCCeeEEEecCchhHHHHHHHHHHHHHHHHcCCCHHH
Q psy5132 62 TVGAVAVDAR-GHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSILRYCVAHRILHYIEQGLSATE 140 (204)
Q Consensus 62 TVGaVa~D~~-G~~AaatSTGG~~~K~~GRVGdspi~GaG~yAd~~~~a~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~ 140 (204)
|--.|++|.. |.+-.+++|.-+.. |.+ + -|+...+|||++=. +..-.+.....++|++|.+|++
T Consensus 1 TfSIvArdp~tg~~GvAvaS~~~aV---Ga~----v----p~~~~gvGavaTQ~----~tnp~~g~~~L~ll~~G~~a~~ 65 (190)
T PF06267_consen 1 TFSIVARDPETGQFGVAVASSSPAV---GAR----V----PWARAGVGAVATQA----YTNPRLGPRGLDLLEAGLSAEE 65 (190)
T ss_dssp EEEEEEE-TTT--EEEEEEESSS-H---HHH----H----EEEETTTEEEEEES----SS--HHHHHHHHHHHTT--HHH
T ss_pred CeEEEEEcCCCCcEEEEEEecCccc---ccc----c----ccccCCcCEEEecc----cCCHHHHHHHHHHHHcCCCHHH
Confidence 4456888865 88888887764432 111 1 26666677777765 3456678899999999999999
Q ss_pred HHHHHHHHHHHHcCCceeeEEecCCCcEEEEEcCCCCeeE
Q psy5132 141 ASQKALDGMRTRVGKTAGAITVTKCGKVGVYFNSPKMAWA 180 (204)
Q Consensus 141 A~~~~i~~~~~~~~~~~GvI~v~~~G~~~~a~~t~~m~~a 180 (204)
+++..++.=... .+-=+.+||.+|+.+...-.+...|.
T Consensus 66 al~~l~~~D~~~--~~RQ~~vvd~~G~~a~~TG~~~~~~~ 103 (190)
T PF06267_consen 66 ALAALLAADPGR--EYRQLAVVDAQGRTAAFTGAECLGWA 103 (190)
T ss_dssp HHHHHHHT-TTG--GG-EEEEEETTS-EEEEE-TTS-SS-
T ss_pred HHHHHHhcCCCc--ccccEEEECCCCCeEEEECccchhhh
Confidence 998887532111 12236677999987655444444443
No 15
>PLN02180 gamma-glutamyl transpeptidase 4
Probab=85.44 E-value=5.7 Score=39.12 Aligned_cols=85 Identities=26% Similarity=0.232 Sum_probs=52.5
Q ss_pred CCCceeEEEEcCCCCEEEEecCCCCCC----Ccc-------ccccCCCCcC------------------Cce--------
Q psy5132 59 GVGTVGAVAVDARGHMVSCTSTGGITG----KMK-------GRVGDTPIPG------------------SGG-------- 101 (204)
Q Consensus 59 ~~dTVGaVa~D~~G~~AaatSTGG~~~----K~~-------GRVGdspi~G------------------aG~-------- 101 (204)
.+||+-..++|.+||..+.|+|=+..| -.| -|..|-.+++ ---
T Consensus 417 ~~~TTh~SVvD~dGnaVS~T~Si~~~FGSgvv~p~tGi~lNN~m~~Fs~~~~~n~~gl~p~~~N~i~PGKRP~ssmsPtI 496 (639)
T PLN02180 417 DQGTSHFCIVDADRNSVSMTSTVNYGFGAGVLSPSTGIVLNNEMDDFSTPAEITPDMLPPAPTNFIEPNKRPLSSMTPLV 496 (639)
T ss_pred CCCCeEEEEEcCCCCEEEEecccCCCcCCeEEeCCceeEEcCcccccCCCcccccccCCCCCcCcCCCCCCccccCCCeE
Confidence 469999999999999999999833222 111 2333322221 000
Q ss_pred -eeeC-CeeEEEecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q psy5132 102 -YCDD-NIASVSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKA 145 (204)
Q Consensus 102 -yAd~-~~~a~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~~ 145 (204)
.-+. ...++.+.| |..|+. .++.-+...+..|+++++|++.-
T Consensus 497 v~~~g~~~lalGs~G-G~~I~~-av~Qviln~l~~Gm~lq~AI~aP 540 (639)
T PLN02180 497 ITKDGEFVAALGGAG-GMHIIP-AVLQVFLNCFVLNMKPKEAVESA 540 (639)
T ss_pred EEeCCcEEEEEECCC-hHHHHH-HHHHHHHHHHhCCCCHHHHHhcC
Confidence 0011 123455555 666554 55888999999999999998654
No 16
>PF01019 G_glu_transpept: Gamma-glutamyltranspeptidase; InterPro: IPR000101 Gamma-glutamyltranspeptidase (2.3.2.2 from EC) (GGT) [] catalyzes the transfer of the gamma-glutamyl moiety of glutathione to an acceptor that may be an amino acid, a peptide or water (forming glutamate). GGT plays a key role in the gamma-glutamyl cycle, a pathway for the synthesis and degradation of glutathione and drug and xenobiotic detoxification []. In prokaryotes and eukaryotes, it is an enzyme that consists of two polypeptide chains, a heavy and a light subunit, processed from a single chain precursor by an autocatalytic cleavage. The active site of GGT is known to be located in the light subunit. The sequences of mammalian and bacterial GGT show a number of regions of high similarity []. Pseudomonas cephalosporin acylases (3.5.1 from EC) that convert 7-beta-(4-carboxybutanamido)-cephalosporanic acid (GL-7ACA) into 7-aminocephalosporanic acid (7ACA) and glutaric acid are evolutionary related to GGT and also show some GGT activity []. Like GGT, these GL-7ACA acylases, are also composed of two subunits. As an autocatalytic peptidase GGT belongs to MEROPS peptidase family T3 (gamma-glutamyltransferase family, clan PB(T)). The active site residue for members of this family and family T1 is C-terminal to the autolytic cleavage site. The type example is gamma-glutamyltransferase 1 from Escherichia coli. ; GO: 0003840 gamma-glutamyltransferase activity; PDB: 2DBX_A 2Z8K_D 2Z8I_B 2DBU_D 2E0X_B 2DBW_B 2E0W_B 2DG5_A 2E0Y_C 2Z8J_C ....
Probab=83.91 E-value=5.2 Score=38.00 Aligned_cols=84 Identities=27% Similarity=0.378 Sum_probs=51.2
Q ss_pred CCCceeEEEEcCCCCEEEEecCCCCCCC-----------ccccccCCC------CcCCceeee-----------------
Q psy5132 59 GVGTVGAVAVDARGHMVSCTSTGGITGK-----------MKGRVGDTP------IPGSGGYCD----------------- 104 (204)
Q Consensus 59 ~~dTVGaVa~D~~G~~AaatSTGG~~~K-----------~~GRVGdsp------i~GaG~yAd----------------- 104 (204)
..||.-.+++|.+||..+.|+|-+..|- +..|.++-. .++.-....
T Consensus 324 ~~~Tth~svvD~~Gn~Vs~t~Si~~~FGSg~~~p~tG~~lNn~~~~F~~~~~~~~~~~~N~~~PgkRp~st~~P~iv~~~ 403 (510)
T PF01019_consen 324 DGDTTHFSVVDKDGNAVSLTQSIGSPFGSGVVVPGTGFLLNNRMSDFSPNPFGLDPGHPNALAPGKRPLSTMSPTIVFKD 403 (510)
T ss_dssp TTEEEEEEEEETTS-EEEEEEEESSTTTTSEBETTTTEBE--GGGGSB--TTSSSTTSTTB--TT-B--B----EEEEET
T ss_pred CCCceeeeeECCCCCEEEeccccCCCCCccEecCcccccccccCcccccCccCCCCCCCCccccCCCCCccccceeEEec
Confidence 6899999999999999999988766332 112221111 111111110
Q ss_pred CC-eeEEEecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q psy5132 105 DN-IASVSTTGHGDSILRYCVAHRILHYIEQGLSATEASQK 144 (204)
Q Consensus 105 ~~-~~a~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~ 144 (204)
++ ..++.+.| |..| -..++.-+++.+..|+++++|+..
T Consensus 404 g~~~l~~Gs~G-G~~i-~~~~~qvl~~~l~~g~~l~~AI~a 442 (510)
T PF01019_consen 404 GKPVLAIGSPG-GDRI-PQAVAQVLLNYLDFGMDLQEAIAA 442 (510)
T ss_dssp TEEEEEEEEES-GGGH-HHHHHHHHHHHHTTSS-HHHHHHS
T ss_pred CCccEEeeccc-cccc-chhHHhhhhhhhcCCCChhhhhcC
Confidence 01 33566666 6665 567788888999999999999864
No 17
>TIGR00066 g_glut_trans gamma-glutamyltranspeptidase. Also called gamma-glutamyltranspeptidase (ggt). Some members of this family have antibiotic synthesis or resistance activities. In the case of a cephalosporin acylase from Pseudomonas sp., the enzyme was shown to retain some gamma-glutamyltranspeptidase activity. Other, more distantly related proteins have ggt-related activities and score below the trusted cutoff.
Probab=83.67 E-value=8.3 Score=36.82 Aligned_cols=85 Identities=26% Similarity=0.317 Sum_probs=52.7
Q ss_pred CCCceeEEEEcCCCCEEEEecCCCCCC-----------CccccccCCCC-cCCceee-----------------eCC-ee
Q psy5132 59 GVGTVGAVAVDARGHMVSCTSTGGITG-----------KMKGRVGDTPI-PGSGGYC-----------------DDN-IA 108 (204)
Q Consensus 59 ~~dTVGaVa~D~~G~~AaatSTGG~~~-----------K~~GRVGdspi-~GaG~yA-----------------d~~-~~ 108 (204)
.+||.-..++|.+||.++.|||=+..| -+-.|.+|=.+ +|.-.+. +++ ..
T Consensus 341 ~~~TTh~svvD~dGnaVs~t~Si~~~FGSg~~~~~tGi~lNN~~~~F~~~p~~~N~~~PgKRP~stmsP~iv~~~~~~~l 420 (516)
T TIGR00066 341 GSQTTHFSVVDRDGNAVSLTTTINLEFGSGVHAPDTGILLNNEMDDFSLKPGGANAVEPNKRPLSSMAPTIVLKDGKPDL 420 (516)
T ss_pred CCCCEEEEEEcCCCCEEEEEeccCCCCCCeEEeCCceEEEcccccccCCCCCCCCcCCCCCccccccCcceEEECCceEE
Confidence 469999999999999999999843322 11222222111 1111100 111 12
Q ss_pred EEEecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q psy5132 109 SVSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKA 145 (204)
Q Consensus 109 a~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~~ 145 (204)
++.+ -|=.-|...++.-++..+..|+++++|++.-
T Consensus 421 ~~Gs--~GG~~i~~~~~qvl~~~l~~gm~l~~AI~aP 455 (516)
T TIGR00066 421 VVGS--PGGSRIITTVLQTIVRHIDYGMPLAEAVSEP 455 (516)
T ss_pred EEeC--CCchHHHHHHHHHHHHHHHcCCCHHHHHhcC
Confidence 2222 3556677888899999999999999998654
No 18
>PRK09615 ggt gamma-glutamyltranspeptidase; Reviewed
Probab=81.92 E-value=8.6 Score=37.39 Aligned_cols=86 Identities=23% Similarity=0.251 Sum_probs=53.3
Q ss_pred CCCceeEEEEcCCCCEEEEecCCCCC----C-------CccccccCCCC-cCCce-----------ee------------
Q psy5132 59 GVGTVGAVAVDARGHMVSCTSTGGIT----G-------KMKGRVGDTPI-PGSGG-----------YC------------ 103 (204)
Q Consensus 59 ~~dTVGaVa~D~~G~~AaatSTGG~~----~-------K~~GRVGdspi-~GaG~-----------yA------------ 103 (204)
.+||.-..++|.+||.++.|+|=+.. . -+--|..|-.+ +|.-. ++
T Consensus 389 ~~~TTh~sVvD~~GnaVS~T~Si~~~FGSgv~~pgtGi~lNN~m~~Fs~~pg~~n~~g~~~~~~N~i~PGKRP~stmsPt 468 (581)
T PRK09615 389 SNQTTHFSVVDKDGNAVAVTYTLNTTFGTGIVAGNSGILLNNQMDDFSAKPGVPNVYGLVGGDANAVGPNKRPLSSMSPT 468 (581)
T ss_pred CCCCEEEEEEcCCCCEEEEEcccCcCcCceEEeCCceeEEcCcccccCCCCCCCccccCCCCCcCcCCCCCcccccCCCe
Confidence 36999999999999999999983221 1 22234433322 33200 00
Q ss_pred ----eCCeeEEEecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q psy5132 104 ----DDNIASVSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKA 145 (204)
Q Consensus 104 ----d~~~~a~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~~ 145 (204)
+++.-.+--|. |=.-|...++.-+++.+..|+++++|+..-
T Consensus 469 iv~~~g~~~la~Gs~-GG~~i~~a~~qvi~n~l~~gm~l~~AV~aP 513 (581)
T PRK09615 469 IVVKDGKTWLVTGSP-GGSRIITTVLQMVVNSIDYGMNVAEATNAP 513 (581)
T ss_pred EEEECCcEEEEEECC-CchHHHHHHHHHHHHHHhCCCCHHHHHhCC
Confidence 11111222222 555667778899999999999999998644
No 19
>PLN02198 glutathione gamma-glutamylcysteinyltransferase
Probab=80.17 E-value=15 Score=35.76 Aligned_cols=85 Identities=20% Similarity=0.164 Sum_probs=53.6
Q ss_pred CCCceeEEEEcCCCCEEEEecCCCCC-----------CCccccccCCCCcCC--c----------ee-------------
Q psy5132 59 GVGTVGAVAVDARGHMVSCTSTGGIT-----------GKMKGRVGDTPIPGS--G----------GY------------- 102 (204)
Q Consensus 59 ~~dTVGaVa~D~~G~~AaatSTGG~~-----------~K~~GRVGdspi~Ga--G----------~y------------- 102 (204)
.+||+-..++|.+||..+.|+|=+.. +-+--|.+|=.+++- | .+
T Consensus 366 ~~~TTh~sVvD~dGnaVS~T~Si~~~FGSgv~~p~tGi~lNN~m~~F~~~~~~~~~~~~~~~~~~N~i~PGKRP~ssmsP 445 (573)
T PLN02198 366 DHGTSHLSIIDSERNAVSMTSTINGYFGALMLSPSTGIVLNNEMDDFSIPMKSGGNLDVPPPAPANFIRPGKRPLSSMTP 445 (573)
T ss_pred CCCCEEEEEECCCCCEEEEeeccCCCCCCeEEeCCCceEEecCccccCCCCCCCCcccccCCCCCCcCCCCCcccccCCC
Confidence 36999999999999999999983321 222234444333321 1 00
Q ss_pred ----eeCC-eeEEEecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q psy5132 103 ----CDDN-IASVSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKA 145 (204)
Q Consensus 103 ----Ad~~-~~a~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~~ 145 (204)
-+.+ ..++. .-|=.-|...++.-+++.+..|+++++|+..-
T Consensus 446 tIv~~~g~~~l~lG--a~GG~~i~~a~~qvi~~~l~~gm~l~~AI~aP 491 (573)
T PLN02198 446 TIVLKDGKVKAAVG--ASGGANIIAGTTEVYLNHFFLKMDPLSSVLAP 491 (573)
T ss_pred eEEEECCcEEEEEE--CCCchhHHHHHHHHHHHHHhCCCCHHHHHhcC
Confidence 0111 12222 23556667788899999999999999998654
No 20
>COG0405 Ggt Gamma-glutamyltransferase [Amino acid transport and metabolism]
Probab=59.88 E-value=1e+02 Score=30.01 Aligned_cols=81 Identities=27% Similarity=0.326 Sum_probs=50.1
Q ss_pred CCCceeEEEEcCCCCEEEEecCCCCCCCccccccCCCCcCCceeeeC---------------------------------
Q psy5132 59 GVGTVGAVAVDARGHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDD--------------------------------- 105 (204)
Q Consensus 59 ~~dTVGaVa~D~~G~~AaatSTGG~~~K~~GRVGdspi~GaG~yAd~--------------------------------- 105 (204)
.+||+-..++|++||..+-|+|--..|-- |-| ++|.|+--+|
T Consensus 353 ~~~Tth~svvD~~GnaVS~t~Si~~~FGS-gv~----vpgtG~~LNN~m~dFs~~p~~~~~~~~N~i~PgKRP~sSmaPt 427 (539)
T COG0405 353 SGGTTHFSVVDKEGNAVSFTQSINLGFGS-GVV----VPGTGILLNNRMDDFSLKPGHPNFGDANAVEPGKRPLSSMAPT 427 (539)
T ss_pred CCCCEEEEEEcCCCCEEEEEEecccccCC-eee----cCCcceEEecCCCccccCCCCCCCCCcccCCCCCcCccccCce
Confidence 48999999999999999999887333310 000 1122222211
Q ss_pred ------CeeEEEecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q psy5132 106 ------NIASVSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKA 145 (204)
Q Consensus 106 ------~~~a~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~~ 145 (204)
+..-+--|-=| +.|-......|+..+.-||++++|+..-
T Consensus 428 iv~k~g~~~~~~GspGG-~~i~~~vlq~i~~~id~gm~~q~Ai~~P 472 (539)
T COG0405 428 IVLKDGKPVMVLGSPGG-SRIPQTVLQTIVNVIDYGMNPQEAIDAP 472 (539)
T ss_pred EEEECCcEEEEEeCCCc-ccchHHHHHHHHHHHhCCCCHHHHHhcc
Confidence 11112222224 4455666788889999999999998654
No 21
>cd04702 ASRGL1_like ASRGL1_like domains, a subfamily of the L-Asparaginase type 2-like enzymes. The wider family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue. ASRGL1, or asparaginase-like 1, has been cloned from mammalian testis cDNA libraries. It has been identified as a sperm antigen that may induce the production of autoantibodies following obstruction of the male reproductive tract, e.g. vasectomy.
Probab=55.91 E-value=25 Score=30.91 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=22.5
Q ss_pred CCceeEEEEcCCCCEEEEecCCCCCC
Q psy5132 60 VGTVGAVAVDARGHMVSCTSTGGITG 85 (204)
Q Consensus 60 ~dTVGaVa~D~~G~~AaatSTGG~~~ 85 (204)
.++.|.|++|++|+++++.+|.++..
T Consensus 223 ~g~gG~Iavd~~G~~~~a~nt~~m~~ 248 (261)
T cd04702 223 KGTGGAIVLDSSGEVGAAFNSKRMAW 248 (261)
T ss_pred CCceEEEEEeCCCCEEEEeCCCCceE
Confidence 35789999999999999999988654
No 22
>PLN02689 Bifunctional isoaspartyl peptidase/L-asparaginase
Probab=53.19 E-value=13 Score=33.50 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.5
Q ss_pred CceeEEEEcCCCCEEEEecCCCCCCC
Q psy5132 61 GTVGAVAVDARGHMVSCTSTGGITGK 86 (204)
Q Consensus 61 dTVGaVa~D~~G~~AaatSTGG~~~K 86 (204)
.+.|.|++|++|+++++.+|.|+..-
T Consensus 279 ~~gG~Iavd~~G~~~~~~nt~~m~~a 304 (318)
T PLN02689 279 GPAGLIAVSATGEVAMAFNTTGMFRA 304 (318)
T ss_pred CceEEEEEcCCccEEEEeCCcCeEEE
Confidence 78999999999999999999988744
No 23
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=50.45 E-value=31 Score=20.95 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=20.2
Q ss_pred CCCceeEEEEcCCCCEEEEecCCCC
Q psy5132 59 GVGTVGAVAVDARGHMVSCTSTGGI 83 (204)
Q Consensus 59 ~~dTVGaVa~D~~G~~AaatSTGG~ 83 (204)
..+..-.|++|..||+=.+.+|.|.
T Consensus 11 ~~~~~~~IavD~~GNiYv~G~T~~~ 35 (38)
T PF06739_consen 11 AQDYGNGIAVDSNGNIYVTGYTNGN 35 (38)
T ss_pred CceeEEEEEECCCCCEEEEEeecCC
Confidence 3577889999999999777777663
No 24
>cd04512 Ntn_Asparaginase_2_like Ntn-hydrolase superfamily, L-Asparaginase type 2-like enzymes. This family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoprotein. Taspase1 catalyzes the cleavage of the Mix Lineage Leukemia (MLL) nuclear protein and transcription factor TFIIA. L-Asparaginase type 2 hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzymes of this family undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=48.99 E-value=38 Score=29.52 Aligned_cols=26 Identities=35% Similarity=0.527 Sum_probs=22.4
Q ss_pred CCceeEEEEcCCCCEEEEecCCCCCC
Q psy5132 60 VGTVGAVAVDARGHMVSCTSTGGITG 85 (204)
Q Consensus 60 ~dTVGaVa~D~~G~~AaatSTGG~~~ 85 (204)
..+.|.|++|.+|+.+.+.+|.++.+
T Consensus 220 ~~~~G~Ia~d~~G~~~~a~~~~~m~~ 245 (248)
T cd04512 220 GGQGGVIAVDSKGEFGAAFNTAGMTV 245 (248)
T ss_pred CCeEEEEEEeCCCCEEEEECcCCceE
Confidence 36789999999999999999987643
No 25
>COG1446 Asparaginase [Amino acid transport and metabolism]
Probab=47.91 E-value=18 Score=32.43 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=24.4
Q ss_pred CceeeEEecCCCcEEEEEcCCCCeeEEE
Q psy5132 155 KTAGAITVTKCGKVGVYFNSPKMAWAYI 182 (204)
Q Consensus 155 ~~~GvI~v~~~G~~~~a~~t~~m~~a~~ 182 (204)
++.|++++|.+|+++.+.+|-+|.+-..
T Consensus 175 gTVGaVAlD~~G~lAaaTSTGG~~~k~~ 202 (307)
T COG1446 175 GTVGAVALDADGNLAAATSTGGVFLKRP 202 (307)
T ss_pred CceeEEEEeCCCcEEEEEccCccccCCC
Confidence 3689999999999999999999876543
No 26
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=47.82 E-value=41 Score=29.61 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=24.8
Q ss_pred CceeeEEecCCCcEEEEEcCCCCeeEEE
Q psy5132 155 KTAGAITVTKCGKVGVYFNSPKMAWAYI 182 (204)
Q Consensus 155 ~~~GvI~v~~~G~~~~a~~t~~m~~a~~ 182 (204)
++.|++++|.+|++..+.+|-++.+=+.
T Consensus 138 dTVGaValD~~G~laaatSTGG~~~K~p 165 (263)
T cd04513 138 DTIGMIALDANGNIAAGTSTSGAAFKIP 165 (263)
T ss_pred CCEEEEEEeCCCCEEEEECCCCccCccC
Confidence 6799999999999999999999887543
No 27
>cd04701 Asparaginase_2 L-Asparaginase type 2. L-Asparaginase hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzyme undergoes an autoproteolytic cleavage into alpha and beta subunits to expose a threonine residue which becomes the N-terminal residue of the beta subunit. The threonine residue plays a central role in hydrolase activity. Some asparaginases can also hydrolyze L-glutamine and are termed glutaminase-asparaginase. This is a member of the Ntn-hydrolase superfamily.
Probab=46.36 E-value=58 Score=28.59 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=24.7
Q ss_pred CceeeEEecCCCcEEEEEcCCCCeeEEE
Q psy5132 155 KTAGAITVTKCGKVGVYFNSPKMAWAYI 182 (204)
Q Consensus 155 ~~~GvI~v~~~G~~~~a~~t~~m~~a~~ 182 (204)
++.|++++|.+|++..+.+|-++.+=+.
T Consensus 134 dTVGavalD~~G~~aaatSTGG~~~K~p 161 (260)
T cd04701 134 GTVGAVALDSHGNLAAATSTGGLTNKRP 161 (260)
T ss_pred CcEEEEEEeCCCCEEEEECCCcccCCCC
Confidence 6799999999999999999999876543
No 28
>PF01112 Asparaginase_2: Asparaginase; InterPro: IPR000246 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Threonine peptidases are characterised by a threonine nucleophile at the N terminus of the mature enzyme. The threonine peptidases belong to clan PB or are unassigned, clan T-. The type example for this clan is the archaean proteasome beta component of Thermoplasma acidophilum. This group of sequences have a signature that places them in MEROPS peptidase family T2 (clan PB(T)). The glycosylasparaginases (3.5.1.26 from EC) are threonine peptidases. Also in this family is L-asparaginase (3.5.1.1 from EC), which catalyses the following reaction: L-asparagine + H2O = L-aspartate + NH3 Glycosylasparaginase catalyses: N4-(beta-N-acetyl-D-glucosaminyl)-L-asparagine + H(2)O = N-acetyl-beta-glucosaminylamine + L-aspartate cleaving the GlcNAc-Asn bond that links oligosaccharides to asparagine in N-linked glycoproteins. The enzyme is composed of two non-identical alpha/beta subunits joined by strong non-covalent forces and has one glycosylation site located in the alpha subunit [] and plays a major role in the degradation of glycoproteins.; GO: 0016787 hydrolase activity; PDB: 1APY_D 1APZ_C 2GEZ_E 2GL9_B 2GAC_D 2GAW_C 1AYY_A 1P4V_C 9GAF_A 1P4K_A ....
Probab=46.24 E-value=19 Score=32.46 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=22.4
Q ss_pred CceeEEEEcCCCCEEEEecCCCCCC
Q psy5132 61 GTVGAVAVDARGHMVSCTSTGGITG 85 (204)
Q Consensus 61 dTVGaVa~D~~G~~AaatSTGG~~~ 85 (204)
.++|+|++|.+|+++.+.+|.+++.
T Consensus 275 ~~~GvIav~~~G~~~~~~n~~~m~~ 299 (319)
T PF01112_consen 275 GTGGVIAVDKKGNIGIAFNSPGMFR 299 (319)
T ss_dssp TSEEEEEEETTS-EEEEESSSCEEE
T ss_pred CceEEEEEcCCCCEEEEEecCccee
Confidence 8999999999999999999998874
No 29
>PRK05114 hypothetical protein; Provisional
Probab=45.27 E-value=62 Score=22.03 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Q psy5132 124 VAHRILHYIEQGLSATEASQKALDGMRTRVGK 155 (204)
Q Consensus 124 lA~~i~~~l~~g~~~~~A~~~~i~~~~~~~~~ 155 (204)
..-+|-++|.+|+|..+|+..+-++++....+
T Consensus 16 AVErIq~LMaqGmSsgEAI~~VA~eiRe~~~~ 47 (59)
T PRK05114 16 AVERIQELMAQGMSSGEAIALVAEELRANHQG 47 (59)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhc
Confidence 45678889999999999999999999876543
No 30
>PRK10226 isoaspartyl peptidase; Provisional
Probab=42.45 E-value=27 Score=31.41 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.5
Q ss_pred CceeEEEEcCCCCEEEEecCCCCCCC
Q psy5132 61 GTVGAVAVDARGHMVSCTSTGGITGK 86 (204)
Q Consensus 61 dTVGaVa~D~~G~~AaatSTGG~~~K 86 (204)
++.|.|++|.+|+++++.+|-|+..-
T Consensus 273 g~gG~Iavd~~G~~~~~~nt~~M~~~ 298 (313)
T PRK10226 273 GSGGLIAIDHEGNVALPFNTEGMYRA 298 (313)
T ss_pred CceEEEEEcCCCCEEEEeCCcccceE
Confidence 46799999999999999999988543
No 31
>PLN02937 Putative isoaspartyl peptidase/L-asparaginase
Probab=42.15 E-value=25 Score=32.87 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=24.3
Q ss_pred CceeeEEecCCCcEEEEEcCCCCeeEE
Q psy5132 155 KTAGAITVTKCGKVGVYFNSPKMAWAY 181 (204)
Q Consensus 155 ~~~GvI~v~~~G~~~~a~~t~~m~~a~ 181 (204)
++.|+|++|.+|+++.+.+|-++.+=+
T Consensus 228 dTVGaValD~~G~iAAaTSTGG~~~K~ 254 (414)
T PLN02937 228 DTVGVICVDSEGNIASGASSGGIAMKV 254 (414)
T ss_pred CCEEEEEEeCCCCEEEEECCCccccCC
Confidence 579999999999999999999988754
No 32
>cd04703 Asparaginase_2_like A subfamily of the L-Asparaginase type 2-like enzymes. The wider family, a member of the Ntn-hydrolase superfamily, includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=41.96 E-value=46 Score=28.98 Aligned_cols=25 Identities=24% Similarity=0.225 Sum_probs=21.8
Q ss_pred CCceeEEEEcCCCCEEEEecCCCCCC
Q psy5132 60 VGTVGAVAVDARGHMVSCTSTGGITG 85 (204)
Q Consensus 60 ~dTVGaVa~D~~G~~AaatSTGG~~~ 85 (204)
..+.|.|++|+ |+++++.+|-++.+
T Consensus 219 ~~~~G~Iavd~-G~~~~~~~s~~m~~ 243 (246)
T cd04703 219 GVTAGVIAVDP-EEEGAAYSSAAMQT 243 (246)
T ss_pred CCceEEEEECC-CceEEEeCchhhhh
Confidence 46899999999 99999999987754
No 33
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.42 E-value=58 Score=29.29 Aligned_cols=58 Identities=29% Similarity=0.554 Sum_probs=40.3
Q ss_pred CCceeEEEEcCCCCEEEEecCCCCCC----Ccccc-ccCCCCcC-CceeeeCCeeEEEecCchhH
Q psy5132 60 VGTVGAVAVDARGHMVSCTSTGGITG----KMKGR-VGDTPIPG-SGGYCDDNIASVSTTGHGDS 118 (204)
Q Consensus 60 ~dTVGaVa~D~~G~~AaatSTGG~~~----K~~GR-VGdspi~G-aG~yAd~~~~a~s~TG~GE~ 118 (204)
..=+|.||.|..|+..++||-=|... .-.|| ++..+++- ||.-+... +-+.+||.|+.
T Consensus 216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~-~f~~ssG~G~~ 279 (305)
T PF07433_consen 216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDD-GFLVSSGQGQL 279 (305)
T ss_pred CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCC-ceEEeCCCccE
Confidence 46699999999998777777554332 44577 77778774 56555544 35777888873
No 34
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=39.23 E-value=83 Score=20.84 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=24.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Q psy5132 124 VAHRILHYIEQGLSATEASQKALDGMRTRV 153 (204)
Q Consensus 124 lA~~i~~~l~~g~~~~~A~~~~i~~~~~~~ 153 (204)
..-+|-++|.+|+|-.||+..+-++++...
T Consensus 16 AvE~Iq~LMaqGmSsgEAI~~VA~~iRe~~ 45 (51)
T PF03701_consen 16 AVERIQELMAQGMSSGEAIAIVAQEIREEH 45 (51)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 456788889999999999999988887653
No 35
>PF14382 ECR1_N: Exosome complex exonuclease RRP4 N-terminal region; PDB: 2NN6_I 3M7N_C 2BA1_A 3M85_C.
Probab=38.28 E-value=19 Score=22.33 Aligned_cols=25 Identities=36% Similarity=0.709 Sum_probs=17.6
Q ss_pred cccCCC--CcCCceeeeCCeeEEEecC
Q psy5132 90 RVGDTP--IPGSGGYCDDNIASVSTTG 114 (204)
Q Consensus 90 RVGdsp--i~GaG~yAd~~~~a~s~TG 114 (204)
|+|.+. ++|.|+|.++...=.|.+|
T Consensus 7 ~l~~~~e~~~G~GTY~~~g~I~asv~G 33 (39)
T PF14382_consen 7 RLGSSEEYMPGHGTYVRDGNIYASVAG 33 (39)
T ss_dssp EEEETTTSEESTTEEEETTEEEESSSE
T ss_pred EeecCCCEecCCCEEEeCCEEEEEeeE
Confidence 455554 8999999998755555555
No 36
>COG3342 Uncharacterized conserved protein [Function unknown]
Probab=34.68 E-value=36 Score=29.83 Aligned_cols=67 Identities=24% Similarity=0.336 Sum_probs=44.1
Q ss_pred eeeCCeeEEEecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCceeeEEecCCCcEEEEEcCC
Q psy5132 102 YCDDNIASVSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKALDGMRTRVGKTAGAITVTKCGKVGVYFNSP 175 (204)
Q Consensus 102 yAd~~~~a~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~~i~~~~~~~~~~~GvI~v~~~G~~~~a~~t~ 175 (204)
|+...+|||++- .+-...+-..+.++|++|.++.+|++..++.=..+-..+.|+ ||.+|+. ++||-.
T Consensus 32 ~~~a~~GAvATQ----s~an~~~G~~gld~L~~G~~~~eal~~ll~~d~~~~~RQvgv--V~~~G~a-~aFtG~ 98 (265)
T COG3342 32 WAKAGVGAVATQ----SYANPALGSAGLDLLAQGLAAEEALAQLLNSDDERELRQVGV--VDQKGRA-AAFTGR 98 (265)
T ss_pred ccccCcceeeee----hhcccccchHHHHHHHccCCHHHHHHHHHccCcchhheeeeE--EcCCCce-eeecCc
Confidence 666566776653 444566777889999999999999999885433332244565 4667753 345443
No 37
>PTZ00246 proteasome subunit alpha; Provisional
Probab=33.68 E-value=1.2e+02 Score=25.81 Aligned_cols=41 Identities=7% Similarity=0.110 Sum_probs=31.1
Q ss_pred EEEecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Q psy5132 109 SVSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKALDGMRTRV 153 (204)
Q Consensus 109 a~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~~i~~~~~~~ 153 (204)
-++++|.|..++...|=+ ..+..++.++|.+.+++-+....
T Consensus 160 ~~~a~G~gs~~~~~~Le~----~~~~~ms~eeai~l~~~al~~~~ 200 (253)
T PTZ00246 160 KATAIGQNNQTAQSILKQ----EWKEDLTLEQGLLLAAKVLTKSM 200 (253)
T ss_pred eEEEECCCcHHHHHHHHH----hccCCCCHHHHHHHHHHHHHHHH
Confidence 357789999999988854 34567899999988887666543
No 38
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=32.71 E-value=61 Score=26.66 Aligned_cols=44 Identities=27% Similarity=0.344 Sum_probs=31.2
Q ss_pred CeeEEEecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCceeeEEecCCCcEEEEE
Q psy5132 106 NIASVSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKALDGMRTRVGKTAGAITVTKCGKVGVYF 172 (204)
Q Consensus 106 ~~~a~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~~i~~~~~~~~~~~GvI~v~~~G~~~~a~ 172 (204)
+++=+..||.| |+.+++.+++.+.+ .....+|++|.+|++...+
T Consensus 25 H~~I~G~TGsG----KS~~~~~ll~~l~~-------------------~~~~~~ii~D~~GEY~~~~ 68 (229)
T PF01935_consen 25 HIAIFGTTGSG----KSNTVKVLLEELLK-------------------KKGAKVIIFDPHGEYASLF 68 (229)
T ss_pred eEEEECCCCCC----HHHHHHHHHHHHHh-------------------cCCCCEEEEcCCCcchhhh
Confidence 45667889999 45566665555442 2336899999999988776
No 39
>cd04514 Taspase1_like Taspase1_like domains; Taspase1 catalyzes the cleavage of the mix lineage leukemia (MLL) nuclear protein and transcription factor TFIIA. Taspase1 is a threonine aspartase, a member of the Ntn hydrolase superfamily and the type 2 asparaginase family. A threonine residue acts as the active site nucleophile in both endopeptidease and protease activities to cleave polypeptide substrates after an aspartate residue. The Taspase1 proenzyme undergoes autoproteolysis into alpha and beta subunits. The N-terminal residue of the beta subunit is a threonine which is the active catalytic residue. The active enzyme is a heterotetramer.
Probab=31.79 E-value=48 Score=29.74 Aligned_cols=28 Identities=29% Similarity=0.277 Sum_probs=24.8
Q ss_pred CCceeeEEecCCCcEEEEEcCCCCeeEE
Q psy5132 154 GKTAGAITVTKCGKVGVYFNSPKMAWAY 181 (204)
Q Consensus 154 ~~~~GvI~v~~~G~~~~a~~t~~m~~a~ 181 (204)
.++.|++++|.+|+++.+.+|-++.+=+
T Consensus 139 ~dTVGaValD~~G~~aaatSTGG~~~K~ 166 (303)
T cd04514 139 LDTVGAVCVDKEGNIAAGVSSGGIALKH 166 (303)
T ss_pred CCCEEEEEEeCCCCEEEEECCCcccCCC
Confidence 4789999999999999999999887654
No 40
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=30.57 E-value=1.5e+02 Score=23.97 Aligned_cols=38 Identities=8% Similarity=0.045 Sum_probs=28.6
Q ss_pred EEecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy5132 110 VSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKALDGMRT 151 (204)
Q Consensus 110 ~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~~i~~~~~ 151 (204)
.+++|.|..+++..|=+. .+..++.+||.+.+++-+..
T Consensus 130 ~~a~G~g~~~~~~~Le~~----~~~~~s~~ea~~l~~~~l~~ 167 (195)
T cd03759 130 FVVSGTASEQLYGMCESL----WRPDMEPDELFETISQALLS 167 (195)
T ss_pred EEEEcccHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHH
Confidence 667899999988875543 34568999998888766554
No 41
>PF05305 DUF732: Protein of unknown function (DUF732); InterPro: IPR007969 This entry represents several uncharacterised Mycobacterium tuberculosis proteins of unknown function.
Probab=30.39 E-value=93 Score=22.32 Aligned_cols=28 Identities=11% Similarity=0.246 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy5132 121 RYCVAHRILHYIEQGLSATEASQKALDG 148 (204)
Q Consensus 121 r~~lA~~i~~~l~~g~~~~~A~~~~i~~ 148 (204)
-..+++.+|..|++|.++++.+..+...
T Consensus 45 ~i~~g~~vC~~l~~G~~~~~v~~~v~~~ 72 (100)
T PF05305_consen 45 AIALGHAVCDQLDSGTSPEQVVDAVQAN 72 (100)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 3568999999999999999887776544
No 42
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=29.77 E-value=14 Score=21.84 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=9.2
Q ss_pred CCCEEEEecCCCCCCC
Q psy5132 71 RGHMVSCTSTGGITGK 86 (204)
Q Consensus 71 ~G~~AaatSTGG~~~K 86 (204)
+|.+..+.||+|..-+
T Consensus 2 ~g~LqI~ISTnG~sP~ 17 (30)
T PF14824_consen 2 RGPLQIAISTNGKSPR 17 (30)
T ss_dssp -TTEEEEEEESSS-HH
T ss_pred CCCeEEEEECCCCChH
Confidence 4567777777776543
No 43
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=29.00 E-value=2.7e+02 Score=22.20 Aligned_cols=61 Identities=18% Similarity=0.349 Sum_probs=38.5
Q ss_pred CceeeeCCeeEEEecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC------CceeeEEecCCC
Q psy5132 99 SGGYCDDNIASVSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKALDGMRTRVG------KTAGAITVTKCG 166 (204)
Q Consensus 99 aG~yAd~~~~a~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~~i~~~~~~~~------~~~GvI~v~~~G 166 (204)
.|+|.... +.++|.|..++...|=+. .+..++.++|++.+++-+..... ...=|..++++|
T Consensus 117 ~G~~~~~~---~~a~G~g~~~~~~~L~~~----~~~~~~~~ea~~l~~~~l~~~~~rd~~~~~~i~i~iv~~~g 183 (188)
T cd03764 117 LGSIIEDK---YTATGSGSPYAYGVLEDE----YKEDMTVEEAKKLAIRAIKSAIERDSASGDGIDVVVITKDG 183 (188)
T ss_pred CCCEEEcC---EEEEcCcHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEECCCC
Confidence 45555544 678899999988766543 24578999998877765543222 112344556666
No 44
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=28.58 E-value=2.8e+02 Score=22.45 Aligned_cols=37 Identities=22% Similarity=0.211 Sum_probs=27.0
Q ss_pred EEecCchhHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHH
Q psy5132 110 VSTTGHGDSILRYCVAHRILHYIEQ--GLSATEASQKALDGMR 150 (204)
Q Consensus 110 ~s~TG~GE~iir~~lA~~i~~~l~~--g~~~~~A~~~~i~~~~ 150 (204)
+.++|.|..++...|-+. ... .++.+||++.+++-+.
T Consensus 131 ~~a~G~g~~~~~~~Le~~----~~~~~~ms~eea~~l~~~~l~ 169 (197)
T cd03760 131 HVATGFGAYLALPLLREA----WEKKPDLTEEEARALIEECMK 169 (197)
T ss_pred EeEEccHHHHHHHHHHhh----cCCCCCCCHHHHHHHHHHHHH
Confidence 466799999999888654 344 6899999766665444
No 45
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=28.46 E-value=1.3e+02 Score=25.48 Aligned_cols=48 Identities=23% Similarity=0.371 Sum_probs=35.7
Q ss_pred CceeeeCCeeEEEecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Q psy5132 99 SGGYCDDNIASVSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKALDGMRTRV 153 (204)
Q Consensus 99 aG~yAd~~~~a~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~~i~~~~~~~ 153 (204)
+|+|-... +.|+|.|-..++..|-+.. +..++++||++.+++-+....
T Consensus 149 ~G~~~~~~---~~a~Gsgs~~a~~~Le~~y----~~~m~~eeai~la~~al~~a~ 196 (236)
T COG0638 149 SGSYNEYK---ATAIGSGSQFAYGFLEKEY----REDLSLEEAIELAVKALRAAI 196 (236)
T ss_pred CCceeecC---EEEEcCCcHHHHHHHHhhc----cCCCCHHHHHHHHHHHHHHHH
Confidence 45555433 5778999999988887765 666899999998887776544
No 46
>PRK03996 proteasome subunit alpha; Provisional
Probab=27.97 E-value=2.3e+02 Score=23.81 Aligned_cols=41 Identities=20% Similarity=0.253 Sum_probs=31.0
Q ss_pred EEEecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Q psy5132 109 SVSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKALDGMRTRV 153 (204)
Q Consensus 109 a~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~~i~~~~~~~ 153 (204)
-..++|.|..+++..|=+. .+..++.++|++.+++-+....
T Consensus 163 ~~~a~G~g~~~~~~~Le~~----~~~~~s~eeai~l~~~al~~~~ 203 (241)
T PRK03996 163 KATAIGAGRDTVMEFLEKN----YKEDLSLEEAIELALKALAKAN 203 (241)
T ss_pred eEEEECCCcHHHHHHHHHh----cccCCCHHHHHHHHHHHHHHHh
Confidence 3578999999998877663 3456899999988887666543
No 47
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=27.44 E-value=1.5e+02 Score=24.65 Aligned_cols=40 Identities=13% Similarity=0.230 Sum_probs=30.3
Q ss_pred EEecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Q psy5132 110 VSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKALDGMRTRV 153 (204)
Q Consensus 110 ~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~~i~~~~~~~ 153 (204)
+.++|.|+.+++..|=+ ..+..++.++|++.+++-+....
T Consensus 133 ~~a~G~g~~~a~~~Le~----~~~~~ms~eeai~l~~~al~~~~ 172 (219)
T TIGR03690 133 YHAVGSGSVFAKGALKK----LYSPDLDEDDALRVAVEALYDAA 172 (219)
T ss_pred eEEEeccHHHHHHHHHh----cCCCCcCHHHHHHHHHHHHHHHH
Confidence 57889999999888764 23457899999988877666543
No 48
>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents Mitogen-activated protein kinase kinase 1 interacting protein, which is a small subcellular adaptor protein required for MAPK signalling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a two alpha-helix and a one alpha-helix layer []. ; PDB: 1VEU_A 1VET_A 1SKO_A 2ZL1_A 3CPT_A.
Probab=27.39 E-value=1.7e+02 Score=22.47 Aligned_cols=34 Identities=15% Similarity=0.121 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCCceeeEEecCCCcEEEEEcCC
Q psy5132 142 SQKALDGMRTRVGKTAGAITVTKCGKVGVYFNSP 175 (204)
Q Consensus 142 ~~~~i~~~~~~~~~~~GvI~v~~~G~~~~a~~t~ 175 (204)
+++-++++.+++++--+|++-|++|-....-..+
T Consensus 3 l~~~L~~ll~~v~Gl~~I~itDrDGvpi~~v~~~ 36 (119)
T PF08923_consen 3 LKRFLQKLLSRVDGLQAIVITDRDGVPIAKVSSD 36 (119)
T ss_dssp HHHHHHHHGGGSTTEEEEEEEETTS-EEEEEE-T
T ss_pred HHHHHHHHHhccCCeEEEEEECCCCcEEEEecCC
Confidence 5677788888888888999999999666554433
No 49
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.35 E-value=1e+02 Score=20.87 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=23.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Q psy5132 126 HRILHYIEQGLSATEASQKALDGMRTRVG 154 (204)
Q Consensus 126 ~~i~~~l~~g~~~~~A~~~~i~~~~~~~~ 154 (204)
-+|-++|..|+|.-||+..+-.+++.+..
T Consensus 18 E~Iq~lMaeGmSsGEAIa~VA~elRe~hk 46 (60)
T COG3140 18 ERIQELMAEGMSSGEAIALVAQELRENHK 46 (60)
T ss_pred HHHHHHHHccccchhHHHHHHHHHHHHhc
Confidence 46778888999999999999888877543
No 50
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=27.14 E-value=1.1e+02 Score=16.42 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=16.0
Q ss_pred CCCceeEEEEcCCCCEEEEe
Q psy5132 59 GVGTVGAVAVDARGHMVSCT 78 (204)
Q Consensus 59 ~~dTVGaVa~D~~G~~Aaat 78 (204)
....|-+++.|++|+|=.+|
T Consensus 3 ~~n~I~~i~~D~~G~lWigT 22 (24)
T PF07494_consen 3 PNNNIYSIYEDSDGNLWIGT 22 (24)
T ss_dssp SSSCEEEEEE-TTSCEEEEE
T ss_pred CCCeEEEEEEcCCcCEEEEe
Confidence 45789999999999997766
No 51
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=25.60 E-value=3.4e+02 Score=21.47 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=32.5
Q ss_pred CceeeeCCeeEEEecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy5132 99 SGGYCDDNIASVSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKALDGMRT 151 (204)
Q Consensus 99 aG~yAd~~~~a~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~~i~~~~~ 151 (204)
.|.|.... +.++|.|..+++..|=+.. ...++.++|++.+++-+..
T Consensus 118 ~G~~~~~~---~~a~G~~~~~~~~~Le~~~----~~~~s~~ea~~~~~~~l~~ 163 (189)
T cd01912 118 LGSLIEAP---FVATGSGSKYAYGILDRGY----KPDMTLEEAVELVKKAIDS 163 (189)
T ss_pred CCCeEecC---EEEEcccHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHHH
Confidence 45565544 5678999999887776653 3467899988877765544
No 52
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=25.38 E-value=2.4e+02 Score=24.11 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=28.0
Q ss_pred EecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy5132 111 STTGHGDSILRYCVAHRILHYIEQGLSATEASQKALDGMRT 151 (204)
Q Consensus 111 s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~~i~~~~~ 151 (204)
.++|.|..+++..|=+. .+..++.+||.+.+++-+..
T Consensus 165 ~a~G~gs~~~~~~Le~~----~k~dms~eEai~l~~kal~~ 201 (247)
T PTZ00488 165 FSCGSGSTYAYGVLDAG----FKWDLNDEEAQDLGRRAIYH 201 (247)
T ss_pred EEEccCHHHHHHHHHhc----CcCCCCHHHHHHHHHHHHHH
Confidence 44899999998877655 35578999998888765554
No 53
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=25.26 E-value=1.2e+02 Score=23.25 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=19.2
Q ss_pred eeeEEecCCCcEEEEEcCCCCe
Q psy5132 157 AGAITVTKCGKVGVYFNSPKMA 178 (204)
Q Consensus 157 ~GvI~v~~~G~~~~a~~t~~m~ 178 (204)
.|.++++++|++..++|.+...
T Consensus 23 vgAa~~~~~G~i~~G~n~e~~~ 44 (127)
T TIGR01354 23 VGAALLTKDGRIFTGVNVENAS 44 (127)
T ss_pred EEEEEEeCCCCEEEEEeecccC
Confidence 8889899999999999988554
No 54
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=25.17 E-value=3.5e+02 Score=21.44 Aligned_cols=38 Identities=18% Similarity=0.345 Sum_probs=28.6
Q ss_pred EEecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy5132 110 VSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKALDGMRT 151 (204)
Q Consensus 110 ~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~~i~~~~~ 151 (204)
..++|.|..+++..|=+. ....++.+||++.+++-+..
T Consensus 126 ~~a~G~g~~~~~~~Le~~----~~~~~s~~ea~~l~~~~l~~ 163 (185)
T TIGR03634 126 YTATGSGSPVAYGVLEDE----YREDMSVEEAKKLAVRAIKS 163 (185)
T ss_pred EEEEcCcHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHHH
Confidence 677899999998777543 34578999998888766554
No 55
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=23.91 E-value=85 Score=18.00 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=11.9
Q ss_pred eeEEEEcCCCCEEEEecCC
Q psy5132 63 VGAVAVDARGHMVSCTSTG 81 (204)
Q Consensus 63 VGaVa~D~~G~~AaatSTG 81 (204)
|=+||+ ..+-+|++||.+
T Consensus 4 i~aia~-g~~~vavaTS~~ 21 (27)
T PF12341_consen 4 IEAIAA-GDSWVAVATSAG 21 (27)
T ss_pred EEEEEc-cCCEEEEEeCCC
Confidence 345666 445788888865
No 56
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=23.89 E-value=1.3e+02 Score=24.65 Aligned_cols=39 Identities=26% Similarity=0.286 Sum_probs=30.3
Q ss_pred EEEecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy5132 109 SVSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKALDGMRTR 152 (204)
Q Consensus 109 a~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~~i~~~~~~ 152 (204)
.+..+|.|+.+.=..++.. .+|.++.+|++.+.+.+.+-
T Consensus 200 ~~~~~GaGD~f~a~l~a~l-----~~g~~~~~A~~~A~~~~~~~ 238 (242)
T cd01169 200 TKNTHGTGCTLSSAIAANL-----AKGLSLEEAVREAKEYVTQA 238 (242)
T ss_pred CCCCCChHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHHH
Confidence 4678999998876666554 46889999999998877653
No 57
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=23.89 E-value=2.2e+02 Score=22.26 Aligned_cols=47 Identities=19% Similarity=0.308 Sum_probs=33.4
Q ss_pred CceeeeCCeeEEEecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy5132 99 SGGYCDDNIASVSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKALDGMRTR 152 (204)
Q Consensus 99 aG~yAd~~~~a~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~~i~~~~~~ 152 (204)
.|.|... -+.++|.|..+++..|-+.. +..++.++|++.+++-+...
T Consensus 120 ~G~~~~~---~~~a~G~g~~~~~~~L~~~~----~~~~s~~ea~~l~~~~l~~~ 166 (182)
T cd01906 120 SGSYIEY---KATAIGSGSQYALGILEKLY----KPDMTLEEAIELALKALKSA 166 (182)
T ss_pred CCCEeec---cEEEECCCcHHHHHHHHHHc----cCCCCHHHHHHHHHHHHHHH
Confidence 3445443 36788999999998887763 34678999988887666543
No 58
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=22.95 E-value=3.9e+02 Score=21.44 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=28.3
Q ss_pred EEecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy5132 110 VSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKALDGMRT 151 (204)
Q Consensus 110 ~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~~i~~~~~ 151 (204)
..++|.|..+++..|=+. .+..++.+||.+.+++-+..
T Consensus 125 ~~a~G~g~~~~~~~Le~~----~~~~~s~eea~~l~~~~l~~ 162 (188)
T cd03761 125 LFSVGSGSTYAYGVLDSG----YRYDLSVEEAYDLARRAIYH 162 (188)
T ss_pred eEEEcccHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHHH
Confidence 345799999988877654 34578999998888765544
No 59
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=22.64 E-value=1.5e+02 Score=25.87 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHHHHcCCceeeEEecCCCc
Q psy5132 136 LSATEASQKALDGMRTRVGKTAGAITVTKCGK 167 (204)
Q Consensus 136 ~~~~~A~~~~i~~~~~~~~~~~GvI~v~~~G~ 167 (204)
.+|+..+++.=+++.++++...|||+.|..|+
T Consensus 122 ~DPd~sA~~ir~~l~~~~g~~v~VIItDt~gr 153 (243)
T TIGR01916 122 EDPDASAEKIRRGLRELTGVDVGVIITDTNGR 153 (243)
T ss_pred CChHHHHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 48998888888889999998999999997764
No 60
>PRK05578 cytidine deaminase; Validated
Probab=22.15 E-value=2.4e+02 Score=21.89 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=20.8
Q ss_pred eeeEEecCCCcEEEEEcCCCCeeE
Q psy5132 157 AGAITVTKCGKVGVYFNSPKMAWA 180 (204)
Q Consensus 157 ~GvI~v~~~G~~~~a~~t~~m~~a 180 (204)
.|..+++.+|++..+.|-+...+.
T Consensus 26 Vgaa~~~~~G~i~~G~nvEna~~~ 49 (131)
T PRK05578 26 VGAALLTDDGRIYTGCNIENASYG 49 (131)
T ss_pred eEEEEEeCCCCEEEEEEeeCcccc
Confidence 899999999999999999976643
No 61
>PRK05756 pyridoxamine kinase; Validated
Probab=21.88 E-value=1.5e+02 Score=25.42 Aligned_cols=37 Identities=24% Similarity=0.173 Sum_probs=29.2
Q ss_pred EEecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy5132 110 VSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKALDGMRT 151 (204)
Q Consensus 110 ~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~~i~~~~~ 151 (204)
+..+|.|+.+.=..++.. .+|.++++|++.+...+.+
T Consensus 215 v~~~GaGD~f~a~~~a~l-----~~g~~~~~al~~A~~~~~~ 251 (286)
T PRK05756 215 RQPVGVGDLTSALFLARL-----LQGGSLEEALEHTTAAVYE 251 (286)
T ss_pred CCCCChHHHHHHHHHHHH-----hcCCCHHHHHHHHHHHHHH
Confidence 478999999987777654 3678999999999876654
No 62
>PRK12411 cytidine deaminase; Provisional
Probab=21.63 E-value=2.4e+02 Score=21.96 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=20.5
Q ss_pred eeeEEecCCCcEEEEEcCCCCee
Q psy5132 157 AGAITVTKCGKVGVYFNSPKMAW 179 (204)
Q Consensus 157 ~GvI~v~~~G~~~~a~~t~~m~~ 179 (204)
.|..+++++|++..+.|.+...+
T Consensus 26 VgAa~~t~~G~i~~G~nvEn~s~ 48 (132)
T PRK12411 26 VGAALLTQDGKVYRGCNVENASY 48 (132)
T ss_pred eEEEEEeCCCCEEEEEEeecCCC
Confidence 88999999999999999887655
No 63
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=21.41 E-value=1.6e+02 Score=24.50 Aligned_cols=38 Identities=29% Similarity=0.260 Sum_probs=29.3
Q ss_pred EEecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy5132 110 VSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKALDGMRTR 152 (204)
Q Consensus 110 ~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~~i~~~~~~ 152 (204)
+..+|.|+.+.=..++.. .+|.++++|++.+...+.+.
T Consensus 211 ~~~~GaGD~f~a~~~~~l-----~~g~~~~~a~~~A~~~~~~~ 248 (254)
T cd01173 211 AYFNGTGDLFAALLLARL-----LKGKSLAEALEKALNFVHEV 248 (254)
T ss_pred CCcCChHHHHHHHHHHHH-----HcCCCHHHHHHHHHHHHHHH
Confidence 678999999876555543 46889999999998776653
No 64
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=21.40 E-value=1.7e+02 Score=25.75 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Q psy5132 123 CVAHRILHYIEQGLSATEASQKALDGMRTRVG 154 (204)
Q Consensus 123 ~lA~~i~~~l~~g~~~~~A~~~~i~~~~~~~~ 154 (204)
.||..|+..|.+|.++.+|++.+.+++.+.+.
T Consensus 213 TlSaAIaa~LA~G~~l~~AV~~Ak~fv~~AI~ 244 (263)
T COG0351 213 TLSAAIAANLAKGLSLEEAVKKAKEFVTRAIR 244 (263)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 58899999999999999999999988876543
No 65
>COG3363 Archaeal IMP cyclohydrolase [Nucleotide transport and metabolism]
Probab=21.38 E-value=4.9e+02 Score=21.73 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=20.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHH
Q psy5132 127 RILHYIEQGLSATEASQKALDGMRT 151 (204)
Q Consensus 127 ~i~~~l~~g~~~~~A~~~~i~~~~~ 151 (204)
-|++.++.|+.|.+|+-.++--|..
T Consensus 78 ~IadKl~~G~ppRdAl~~vl~aMDY 102 (200)
T COG3363 78 PIADKLESGVPPRDALVSVLLAMDY 102 (200)
T ss_pred hHHHHHhcCCChHHHHHHHHHhhhc
Confidence 4678999999999999999866653
No 66
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=21.10 E-value=4.3e+02 Score=21.01 Aligned_cols=47 Identities=13% Similarity=0.201 Sum_probs=32.6
Q ss_pred CceeeeCCeeEEEecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy5132 99 SGGYCDDNIASVSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKALDGMRTR 152 (204)
Q Consensus 99 aG~yAd~~~~a~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~~i~~~~~~ 152 (204)
.|+|... .++++|.|..+++..|=+. .+.+++.+||.+.+++-+...
T Consensus 117 ~G~~~~~---~~~~~G~g~~~~~~~Le~~----~~~~~s~~ea~~l~~~al~~~ 163 (188)
T cd03762 117 GGMLIRQ---PFAIGGSGSTYIYGYVDAN----YKPGMTLEECIKFVKNALSLA 163 (188)
T ss_pred CCCEEec---CEEEEcccHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHHHH
Confidence 3455544 3678899999888866543 345789999988887666543
No 67
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=21.03 E-value=1.3e+02 Score=21.89 Aligned_cols=26 Identities=19% Similarity=0.083 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHH
Q psy5132 118 SILRYCVAHRILHYIEQGLSATEASQ 143 (204)
Q Consensus 118 ~iir~~lA~~i~~~l~~g~~~~~A~~ 143 (204)
.=+-..+++.|.-.|+.|+++++.++
T Consensus 37 ~~~~~ai~rliS~~Lr~G~~~~~ii~ 62 (95)
T PF12637_consen 37 SGNLEAIARLISLALRSGVPPEEIID 62 (95)
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 34456789999999999999887543
No 68
>KOG4115|consensus
Probab=20.99 E-value=1.8e+02 Score=21.85 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHcCCceeeEEecCCCcEE
Q psy5132 141 ASQKALDGMRTRVGKTAGAITVTKCGKVG 169 (204)
Q Consensus 141 A~~~~i~~~~~~~~~~~GvI~v~~~G~~~ 169 (204)
.++++++++. .+++-.|+|++|..|...
T Consensus 4 ~vEe~~~R~q-s~~gV~giiv~d~~Gvpi 31 (97)
T KOG4115|consen 4 EVEETLKRLQ-SYKGVTGIIVVDNAGVPI 31 (97)
T ss_pred HHHHHHHHHh-ccCCceeEEEECCCCcEe
Confidence 3567777754 356778999999999433
No 69
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=20.74 E-value=4e+02 Score=20.84 Aligned_cols=47 Identities=23% Similarity=0.357 Sum_probs=32.6
Q ss_pred CceeeeCCeeEEEecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy5132 99 SGGYCDDNIASVSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKALDGMRT 151 (204)
Q Consensus 99 aG~yAd~~~~a~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~~i~~~~~ 151 (204)
.|.|-..+ -..++|.|...++..|-+.. ...++.+||.+.+++-|..
T Consensus 127 ~G~~~~~~--~~~aiG~g~~~~~~~l~~~~----~~~~~~~ea~~~~~~~l~~ 173 (190)
T PF00227_consen 127 SGSYIECK--RFAAIGSGSQFAQPILEKLY----KPDLSLEEAIELALKALKE 173 (190)
T ss_dssp TSEEEEBS--SEEEESTTHHHHHHHHHHHH----TTTSSHHHHHHHHHHHHHH
T ss_pred cccccccc--ccccchhcchhhhHHHHhhc----cCCCCHHHHHHHHHHHHHH
Confidence 45555542 14667999998888886654 5678999988877766554
No 70
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=20.69 E-value=2.3e+02 Score=23.24 Aligned_cols=46 Identities=15% Similarity=0.271 Sum_probs=33.0
Q ss_pred ceeeeCCeeEEEecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy5132 100 GGYCDDNIASVSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKALDGMRTR 152 (204)
Q Consensus 100 G~yAd~~~~a~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~~i~~~~~~ 152 (204)
|+|.... .+++|.|..+++..|=++ .+.+++.+||++.+++-+...
T Consensus 153 G~~~~~~---~~a~G~~~~~~~~~L~~~----~~~~ls~eeai~l~~~~l~~~ 198 (213)
T cd03753 153 GTFTRCD---AKAIGSGSEGAQSSLQEK----YHKDMTLEEAEKLALSILKQV 198 (213)
T ss_pred CCeeccc---EEEECCCcHHHHHHHHhh----ccCCCCHHHHHHHHHHHHHHH
Confidence 4555443 468999999988777653 345689999999888766543
No 71
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=20.68 E-value=1.7e+02 Score=25.56 Aligned_cols=32 Identities=22% Similarity=0.454 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHHHcCCceeeEEecCCCc
Q psy5132 136 LSATEASQKALDGMRTRVGKTAGAITVTKCGK 167 (204)
Q Consensus 136 ~~~~~A~~~~i~~~~~~~~~~~GvI~v~~~G~ 167 (204)
.+|+..+++.=+++.++++...|||+.|..|+
T Consensus 123 ~DPd~SA~~ir~~l~~~~g~~v~VIItDt~gr 154 (245)
T PRK13293 123 ENPDESAERIREGLEELTGKKVGVIITDTNGR 154 (245)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 58998888888888889888999999997663
No 72
>COG0100 RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]
Probab=20.64 E-value=71 Score=25.20 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=21.7
Q ss_pred CCCceeEEEEcCCCCEEEEecCCCCCCCc
Q psy5132 59 GVGTVGAVAVDARGHMVSCTSTGGITGKM 87 (204)
Q Consensus 59 ~~dTVGaVa~D~~G~~AaatSTGG~~~K~ 87 (204)
..+|+=- ..|..||.-+..|+||+.+|-
T Consensus 27 fNNTivt-itD~~Gn~i~wassG~~gfk~ 54 (129)
T COG0100 27 FNNTIVT-ITDLTGNVIIWASSGGMGFKG 54 (129)
T ss_pred cCCcEEE-ecCCCCCEEEEEecCCceEcC
Confidence 3466533 349999999999999999883
No 73
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=20.52 E-value=3.6e+02 Score=21.78 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=28.0
Q ss_pred EEecCchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy5132 110 VSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKALDGMRT 151 (204)
Q Consensus 110 ~s~TG~GE~iir~~lA~~i~~~l~~g~~~~~A~~~~i~~~~~ 151 (204)
..++|.|..+++..|=+. .+..++.+||.+.+++-+..
T Consensus 129 ~~a~G~gs~~~~~~Le~~----~~~~ms~eeai~l~~~a~~~ 166 (193)
T cd03758 129 YAAHGYGAYFCLSILDRY----YKPDMTVEEALELMKKCIKE 166 (193)
T ss_pred eeEEeecHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHH
Confidence 577899999999887443 24578999988777655543
No 74
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=20.31 E-value=1.4e+02 Score=19.51 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=15.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHH
Q psy5132 128 ILHYIEQGLSATEASQKALDGM 149 (204)
Q Consensus 128 i~~~l~~g~~~~~A~~~~i~~~ 149 (204)
++++++.|.+|+ |+-.+|+++
T Consensus 27 ci~L~e~GVnPe-aLA~vI~el 47 (48)
T PF12554_consen 27 CIELCENGVNPE-ALAAVIKEL 47 (48)
T ss_pred HHHHHHCCCCHH-HHHHHHHHh
Confidence 457778898887 677777665
Done!