RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5132
(204 letters)
>gnl|CDD|240057 cd04702, ASRGL1_like, ASRGL1_like domains, a subfamily of the
L-Asparaginase type 2-like enzymes. The wider family
includes Glycosylasparaginase, Taspase 1 and
L-Asparaginase type 2 enzymes. The proenzymes undergo
autoproteolytic cleavage before a threonine to generate
alpha and beta subunits. The threonine becomes the
N-terminal residue of the beta subunit and is the
catalytic residue. ASRGL1, or asparaginase-like 1, has
been cloned from mammalian testis cDNA libraries. It has
been identified as a sperm antigen that may induce the
production of autoantibodies following obstruction of
the male reproductive tract, e.g. vasectomy.
Length = 261
Score = 194 bits (495), Expect = 2e-62
Identities = 86/192 (44%), Positives = 111/192 (57%), Gaps = 37/192 (19%)
Query: 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPNVTEIGGGGV 60
MEKT H +L G+GA F R MGL
Sbjct: 107 MEKTDHVLLVGEGAERFAREMGL------------------------------------- 129
Query: 61 GTVGAVAVDARGHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSIL 120
GTVGAVA+DA G++ + TSTGG T K+ GRVGDTP+ G G Y D+ + +VSTTGHG+SI+
Sbjct: 130 GTVGAVALDASGNIAAATSTGGTTNKLVGRVGDTPLIGCGTYADNKVGAVSTTGHGESIM 189
Query: 121 RYCVAHRILHYIEQGLSATEASQKALDGMRTRVGKTAGAITVTKCGKVGVYFNSPKMAWA 180
+ +A IL ++EQG SA EA+ KA++ M RV T GAI + G+VG FNS +MAWA
Sbjct: 190 KVVLARLILDHMEQGGSAQEAADKAIEYMTERVKGTGGAIVLDSSGEVGAAFNSKRMAWA 249
Query: 181 YIRGTKLHYGIY 192
Y + +LHYGI
Sbjct: 250 YAKDGQLHYGIV 261
>gnl|CDD|224363 COG1446, COG1446, Asparaginase [Amino acid transport and
metabolism].
Length = 307
Score = 152 bits (385), Expect = 2e-45
Identities = 72/192 (37%), Positives = 102/192 (53%), Gaps = 6/192 (3%)
Query: 1 MEKTPHGILSGDGANEFGRRMGLPQIPDS------ELITENAKHALEKFLCEGQDPNVTE 54
MEKTPH +L G+GA F R MGLP+ D + + A ++ L + E
Sbjct: 109 MEKTPHVLLVGEGAVAFAREMGLPREYDPFTEERRAEWLQAERDAKKQVLDHSKTYEEPE 168
Query: 55 IGGGGVGTVGAVAVDARGHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTG 114
GTVGAVA+DA G++ + TSTGG+ K GRVGD+PIPG+G Y ++ +VS TG
Sbjct: 169 DPDSKHGTVGAVALDADGNLAAATSTGGVFLKRPGRVGDSPIPGAGFYAENGAGAVSCTG 228
Query: 115 HGDSILRYCVAHRILHYIEQGLSATEASQKALDGMRTRVGKTAGAITVTKCGKVGVYFNS 174
G+ I+R +A I + GLS A ++ ++ +G G I V G V FN+
Sbjct: 229 VGEVIIRNALAFDIAARVRYGLSLDAACERVVEEALKALGGDGGLIAVDAKGNVAAAFNT 288
Query: 175 PKMAWAYIRGTK 186
M A+I+G
Sbjct: 289 KGMLRAWIKGGG 300
>gnl|CDD|240056 cd04701, Asparaginase_2, L-Asparaginase type 2. L-Asparaginase
hydrolyzes L-asparagine to L-aspartate and ammonia. The
proenzyme undergoes an autoproteolytic cleavage into
alpha and beta subunits to expose a threonine residue
which becomes the N-terminal residue of the beta
subunit. The threonine residue plays a central role in
hydrolase activity. Some asparaginases can also
hydrolyze L-glutamine and are termed
glutaminase-asparaginase. This is a member of the
Ntn-hydrolase superfamily.
Length = 260
Score = 143 bits (362), Expect = 2e-42
Identities = 62/184 (33%), Positives = 88/184 (47%), Gaps = 37/184 (20%)
Query: 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPNVTEIGGGGV 60
MEKTPH +L+G+GA F R G
Sbjct: 110 MEKTPHVLLAGEGAEAFARE------------------------------------QGKH 133
Query: 61 GTVGAVAVDARGHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSIL 120
GTVGAVA+D+ G++ + TSTGG+T K GR+GDTPI G+G Y D+ +VS TG G+ +
Sbjct: 134 GTVGAVALDSHGNLAAATSTGGLTNKRPGRIGDTPIIGAGTYADNWSVAVSCTGTGEYFI 193
Query: 121 RYCVAHRILHYIE-QGLSATEASQKALDGMRTRVGKTAGAITVTKCGKVGVYFNSPKMAW 179
R AH + + GLS +A++ + + +G G I V G V + FN+ M
Sbjct: 194 RVAAAHDVAARVRYAGLSLADAAEAVIGEVLETLGGDGGLIAVDARGNVAMPFNTGGMYR 253
Query: 180 AYIR 183
+I
Sbjct: 254 GWIS 257
>gnl|CDD|239949 cd04512, Ntn_Asparaginase_2_like, Ntn-hydrolase superfamily,
L-Asparaginase type 2-like enzymes. This family includes
Glycosylasparaginase, Taspase 1 and L-Asparaginase type
2 enzymes. Glycosylasparaginase catalyzes the hydrolysis
of the glycosylamide bond of asparagine-linked
glycoprotein. Taspase1 catalyzes the cleavage of the Mix
Lineage Leukemia (MLL) nuclear protein and transcription
factor TFIIA. L-Asparaginase type 2 hydrolyzes
L-asparagine to L-aspartate and ammonia. The proenzymes
of this family undergo autoproteolytic cleavage before a
threonine to generate alpha and beta subunits. The
threonine becomes the N-terminal residue of the beta
subunit and is the catalytic residue.
Length = 248
Score = 133 bits (336), Expect = 9e-39
Identities = 66/182 (36%), Positives = 97/182 (53%), Gaps = 37/182 (20%)
Query: 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPNVTEIGGGGV 60
MEKTPH +L G+GA EF GL
Sbjct: 104 MEKTPHVLLVGEGALEFALDHGL------------------------------------- 126
Query: 61 GTVGAVAVDARGHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSIL 120
TVGAVA+D +G++ + TSTGG++ K+ GRVGD+PI G+G Y D+ + STTGHG++I+
Sbjct: 127 DTVGAVALDGQGNLAAATSTGGMSLKLPGRVGDSPIIGAGFYADNEAGAASTTGHGEAII 186
Query: 121 RYCVAHRILHYIEQGLSATEASQKALDGMRTRVGKTAGAITVTKCGKVGVYFNSPKMAWA 180
R +A R++ +EQG++A A++ A++ + + G G I V G+ G FN+ M A
Sbjct: 187 RTVLARRVVELMEQGMAAQAAAETAVEELGSLKGGQGGVIAVDSKGEFGAAFNTAGMTVA 246
Query: 181 YI 182
Y
Sbjct: 247 YH 248
>gnl|CDD|239950 cd04513, Glycosylasparaginase, Glycosylasparaginase catalyzes the
hydrolysis of the glycosylamide bond of
asparagine-linked glycoproteins. This enzyme is an
amidase located inside lysosomes. Mutation of this gene
in humans causes a genetic disorder known as
aspartylglycosaminuria (AGU). The glycosylasparaginase
precursor undergoes autoproteolysis through an N-O or
N-S acyl rearrangement of the peptide bond, which leads
to the cleavage of a peptide bond between an Asp and a
Thr. This proteolysis step generates an exposed
N-terminal catalytic threonine and activates the enzyme.
Length = 263
Score = 124 bits (314), Expect = 2e-35
Identities = 56/173 (32%), Positives = 91/173 (52%), Gaps = 16/173 (9%)
Query: 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPNVTEIGGGGV 60
ME T H +L G+GA F MG P+ L+TE ++ A +K+L E
Sbjct: 91 MEHTKHTLLVGEGATRFAVSMGFPEEN---LLTERSRKAWKKWLEENC----------NH 137
Query: 61 GTVGAVAVDARGHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSIL 120
T+G +A+DA G++ + TST G K+ GRVGD+PIPG+G Y D + + + TG G+ ++
Sbjct: 138 DTIGMIALDANGNIAAGTSTSGAAFKIPGRVGDSPIPGAGAYADSEVGAAAATGDGEEMM 197
Query: 121 RYCVAHRILHYIEQGLSATEASQKALDGMRTRVGKTA---GAITVTKCGKVGV 170
R+ + + + Y+ QG+S EA +A+ + + + K G+ G
Sbjct: 198 RFLPSFQAVEYMRQGMSPKEACLEAIKRIAKHFDGPDFEGAVVALNKKGEYGA 250
>gnl|CDD|216303 pfam01112, Asparaginase_2, Asparaginase.
Length = 296
Score = 122 bits (309), Expect = 2e-34
Identities = 68/187 (36%), Positives = 98/187 (52%), Gaps = 9/187 (4%)
Query: 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQ---DPNV--TEI 55
MEKTPH +L G+GA F + G S T+ C+ DP+V +
Sbjct: 95 MEKTPHILLVGEGATLFAKSQGFETEDLSTFETQEWIEEWLAAKCQKNVWLDPSVYCLDN 154
Query: 56 GGGGVGTVGAVAVDARGHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGH 115
GT+G VA+DA G++ + TSTGG+ KM GRVGD+PIPG+G Y +N A S TG
Sbjct: 155 EQSDHGTIGMVALDANGNLAAATSTGGMVNKMPGRVGDSPIPGAGAYA-NNFAGASATGK 213
Query: 116 GDSILRYCVAHRILHYIEQG-LSATEASQKALDGMRTRVGKTAGAITVTKCGKVGVYFNS 174
G+ I+R+ A+ ++ +E G LS EA+ K + R + G I + G++G N+
Sbjct: 214 GEDIIRFLPAYDVVALMEYGGLSLAEAAAKRITKALPRG--SGGLIALNHKGEIGAPCNT 271
Query: 175 PKMAWAY 181
M A
Sbjct: 272 TGMFRAT 278
>gnl|CDD|215372 PLN02689, PLN02689, Bifunctional isoaspartyl
peptidase/L-asparaginase.
Length = 318
Score = 120 bits (303), Expect = 4e-33
Identities = 71/195 (36%), Positives = 96/195 (49%), Gaps = 18/195 (9%)
Query: 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENA----KHALEKFL--------CEGQ 48
MEKTPH L+ DGA F R+ G+ + +S ITE K A E +
Sbjct: 113 MEKTPHIYLAFDGAEAFARQQGVETVDNSYFITEENVERLKQAKEANSVQFDYRIPLDKP 172
Query: 49 DP--NVTEIGGGGVGTVGAVAVDARGHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDN 106
+ G TVG VAVD+ G+ + TSTGG+ KM GR+GDTPI G+G Y +
Sbjct: 173 AKAAALAADGDAQPETVGCVAVDSDGNCAAATSTGGLVNKMVGRIGDTPIIGAGTYANHL 232
Query: 107 IASVSTTGHGDSILRYCVAHRILHYIE-QGLSATEASQKALDGMRTRVGKTAGAITVTKC 165
A VS TG G++I+R VA + +E +GL EA + AG I V+
Sbjct: 233 CA-VSATGKGEAIIRGTVARDVAAVMEYKGLPLQEAVDYVIKERLPEG--PAGLIAVSAT 289
Query: 166 GKVGVYFNSPKMAWA 180
G+V + FN+ M A
Sbjct: 290 GEVAMAFNTTGMFRA 304
>gnl|CDD|240058 cd04703, Asparaginase_2_like, A subfamily of the L-Asparaginase
type 2-like enzymes. The wider family, a member of the
Ntn-hydrolase superfamily, includes
Glycosylasparaginase, Taspase 1 and L-Asparaginase type
2 enzymes. The proenzymes undergo autoproteolytic
cleavage before a threonine to generate alpha and beta
subunits. The threonine becomes the N-terminal residue
of the beta subunit and is the catalytic residue.
Length = 246
Score = 110 bits (278), Expect = 3e-30
Identities = 60/181 (33%), Positives = 81/181 (44%), Gaps = 34/181 (18%)
Query: 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPNVTEIGGGGV 60
ME+TPH +L+GDGA +F G+ GG
Sbjct: 99 MEETPHVLLAGDGAVKFAALTGVED-------------------------------PGGH 127
Query: 61 GTVGAVAVDARGHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSIL 120
TVGAVA D G + + TSTGG + GRVGD P PG+G Y A VS TG G++I
Sbjct: 128 DTVGAVARDG-GRLAAATSTGGRWPALAGRVGDVPQPGAGFYAGPRGA-VSATGAGEAIA 185
Query: 121 RYCVAHRILHYIEQGLSATEASQKALDGMRTRVGKTAGAITVTKCGKVGVYFNSPKMAWA 180
R +A + + G A +A++ A+ G TAG I V + G ++S M A
Sbjct: 186 RNTLARSAYNRLGTGDPAQDAAKAAISRFSEATGVTAGVIAVDP-EEEGAAYSSAAMQTA 244
Query: 181 Y 181
Sbjct: 245 V 245
>gnl|CDD|182319 PRK10226, PRK10226, isoaspartyl peptidase; Provisional.
Length = 313
Score = 100 bits (251), Expect = 9e-26
Identities = 66/203 (32%), Positives = 106/203 (52%), Gaps = 16/203 (7%)
Query: 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPNVTEIGGGG- 59
ME++PH ++ G+GA F G+ ++ E+ + ++ L + T + G
Sbjct: 114 MEQSPHVMMIGEGAENFAFAHGMERV-SPEIFSTPLRYEQ---LLAARAEGATVLDHSGA 169
Query: 60 -------VGTVGAVAVDARGHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVST 112
+GTVGAVA+D G++ + TSTGG+T K+ GRVGD+P+ G+G Y ++ +VS
Sbjct: 170 PLDEKQKMGTVGAVALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSC 229
Query: 113 TGHGDSILRYCVAHRILHYIEQG-LSATEASQKALDGMRTRVGKTAGAITVTKCGKVGVY 171
TG G+ +R A+ I ++ G LS EA ++ + +G + G I + G V +
Sbjct: 230 TGTGEVFIRALAAYDIAALMDYGGLSLAEACERVVMEKLPALGGSGGLIAIDHEGNVALP 289
Query: 172 FNSPKM--AWAYIRGTKLHYGIY 192
FN+ M AW Y G GIY
Sbjct: 290 FNTEGMYRAWGYA-GDTPTTGIY 311
>gnl|CDD|239951 cd04514, Taspase1_like, Taspase1_like domains; Taspase1 catalyzes
the cleavage of the mix lineage leukemia (MLL) nuclear
protein and transcription factor TFIIA. Taspase1 is a
threonine aspartase, a member of the Ntn hydrolase
superfamily and the type 2 asparaginase family. A
threonine residue acts as the active site nucleophile in
both endopeptidease and protease activities to cleave
polypeptide substrates after an aspartate residue. The
Taspase1 proenzyme undergoes autoproteolysis into alpha
and beta subunits. The N-terminal residue of the beta
subunit is a threonine which is the active catalytic
residue. The active enzyme is a heterotetramer.
Length = 303
Score = 66.2 bits (162), Expect = 4e-13
Identities = 42/141 (29%), Positives = 59/141 (41%), Gaps = 15/141 (10%)
Query: 61 GTVGAVAVDARGHMVSCTSTGGITGKMKGRVGDTPIPGSG------GYCDDNIASVSTTG 114
TVGAV VD G++ + S+GGI K GRVG G G +VST+G
Sbjct: 140 DTVGAVCVDKEGNIAAGVSSGGIALKHPGRVGQAATYGCGCWASKGDPFTPTSVAVSTSG 199
Query: 115 HGDSILRYCVAHRILHYIEQGL-SATEASQKAL---DGMRTRVGKTAGAITVTKCGKVGV 170
G+ ++R +A + S ++ QK+ + K AGAI V K G
Sbjct: 200 CGEHLIRTQLARECAERLYLSDCSLEQSLQKSFQEKFFNSPELKKLAGAIVVRAEVKTGN 259
Query: 171 Y-----FNSPKMAWAYIRGTK 186
+P M Y+ G K
Sbjct: 260 VEILWGHTTPSMCVGYMSGQK 280
>gnl|CDD|215506 PLN02937, PLN02937, Putative isoaspartyl peptidase/L-asparaginase.
Length = 414
Score = 57.2 bits (138), Expect = 6e-10
Identities = 64/253 (25%), Positives = 95/253 (37%), Gaps = 58/253 (22%)
Query: 3 KTPHGILSGDGANEFGRRMG--LPQI---PDSELITENAKHALEKF-------------- 43
+ P L G+GA ++ + G LP+ + L+TE AK +K+
Sbjct: 130 RIPPMFLVGEGARQWAKSKGIDLPETVEEAEKWLVTERAKEQWKKYKTMLASAIAKSSCD 189
Query: 44 ------LCEGQDPNVTEIGGGGVG---------------TVGAVAVDARGHMVSCTSTGG 82
L E + P G G G TVG + VD+ G++ S S+GG
Sbjct: 190 SQSTSKLSELEAPRSNPSNGTGGGQSSMCTASDEDCIMDTVGVICVDSEGNIASGASSGG 249
Query: 83 ITGKMKGRVGDTPIPGSGGYCDDN-------IASVSTTGHGDSILRYCVAHR--ILHYIE 133
I K+ GRVG + GSG + I +G G+ ++R A + +
Sbjct: 250 IAMKVSGRVGLAAMYGSGCWASSKGPFGAPFIVGCCVSGAGEYLMRGFAARECCVSSSLS 309
Query: 134 QGLSATEASQKAL-----DGMRTRVGKTAGAITVTKCGKVGVYFNSPKMAWAYIRG--TK 186
Q A+ A K L K AG + V V NSP + I +
Sbjct: 310 QAGPAS-ACMKVLRSVIQGSSAKTTDKDAGILLVQADASVMAPGNSPSLKAVEIAAAYSS 368
Query: 187 LHYGI-YPGQDIE 198
L +GI Y G +E
Sbjct: 369 LSFGIGYFGSSME 381
>gnl|CDD|215812 pfam00239, Resolvase, Resolvase, N terminal domain. The N-terminal
domain of the resolvase family (this family) contains
the active site and the dimer interface. The extended
arm at the C-terminus of this domain connects to the
C-terminal helix-turn-helix domain of resolvase - see
pfam02796.
Length = 139
Score = 34.9 bits (81), Expect = 0.008
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 110 VSTTGHG-----DSILRYCVAHRILHYIEQGLSATEASQKALDGMRTRVGKTAGAITVTK 164
VST +++ Y I+ + ++G+S + + L + + + + VTK
Sbjct: 7 VSTDDQDLERQLEALRAYGKCEEIVEFEDKGVSGKKLERPGLQRLLEDL-REGDTLVVTK 65
>gnl|CDD|188650 cd09818, PIOX_like, Animal heme oxidases similar to plant
pathogen-inducible oxygenases. This is a diverse family
of oxygenases related to the animal heme peroxidases,
with members from plants, animals, and bacteria. The
plant pathogen-inducible oxygenases (PIOX) oxygenate
fatty acids into 2R-hydroperoxides. They may be involved
in the hypersensitive reaction, rapid and localized cell
death induced by infection with pathogens, and the
rapidly induced expression of PIOX may be caused by the
oxidative burst that occurs in the process of cell
death.
Length = 484
Score = 33.8 bits (78), Expect = 0.046
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 15 NEFGRRMGLPQIPDSELITENAKHALE 41
NEF R + LP E +T + + A E
Sbjct: 359 NEFRRLLHLPPAKSFEDLTGDEEVAAE 385
>gnl|CDD|221039 pfam11234, DUF3036, Protein of unknown function (DUF3036). Some
members in this family of proteins are annotated as
yoaS. Currently no function is known.
Length = 155
Score = 31.1 bits (71), Expect = 0.18
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 122 YCVAHRILHYIEQGLSATEASQKALDGMRTRVGKTAGAITVT 163
Y A ++L YI++ + +E S +AL ++ A AI++
Sbjct: 64 YQ-AFKLLRYIDRNTAFSELSVRALKNIK----YCAIAISLL 100
>gnl|CDD|202394 pfam02783, MCR_beta_N, Methyl-coenzyme M reductase beta subunit,
N-terminal domain. Methyl-coenzyme M reductase (MCR) is
the enzyme responsible for microbial formation of
methane. It is a hexamer composed of 2 alpha
(pfam02249), 2 beta (this family), and 2 gamma
(pfam02240) subunits with two identical nickel
porphinoid active sites. The N-terminal domain has an
alpha/beta ferredoxin-like fold.
Length = 182
Score = 30.5 bits (69), Expect = 0.36
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 7 GILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPNVTEIGGG 58
G + G G GR + L + ++E I E K ++ + E D NV I GG
Sbjct: 55 GKVGGKGCQIPGRELDLDIVGNAEAIAEKVKKMVQ--VSEDDDTNVKLINGG 104
>gnl|CDD|132151 TIGR03107, glu_aminopep, glutamyl aminopeptidase. This model
represents the M42.001 clade within MEROPS family M42.
M42 includes glutamyl aminopeptidase as in the present
model, deblocking aminopeptidases as from Pyrococcus
horikoshii and related species, and
endo-1,4-beta-glucanase (cellulase M) as from
Clostridium thermocellum. The current family includes
[Protein fate, Degradation of proteins, peptides, and
glycopeptides].
Length = 350
Score = 30.2 bits (68), Expect = 0.69
Identities = 30/116 (25%), Positives = 42/116 (36%), Gaps = 33/116 (28%)
Query: 7 GILSGDGANEFGRRMGLPQIPDSELI-TENAKHALEK-----FLC----------EGQDP 50
G + D A FG R G +P +E I T N K+ + K + + Q+
Sbjct: 139 GFTNKDEAWSFGVRPGDVIVPQTETILTANGKNVISKAWDNRYGVLMILELLESLKDQEL 198
Query: 51 NVTEIGGGGVGTVGAVAVDARGHMVS-------------CTSTGGITGKMKGRVGD 93
T I G V V RG VS C+ G I G G++G+
Sbjct: 199 PNTLIAGANVQE----EVGLRGAHVSTTKFNPDIFFAVDCSPAGDIYGDQGGKLGE 250
>gnl|CDD|226728 COG4278, COG4278, Uncharacterized conserved protein [Function
unknown].
Length = 269
Score = 29.9 bits (67), Expect = 0.90
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 28 DSELITENAKHALE--KFLCEGQDPNVTEIGGGGVGTVGAVAVDARGHMVSCTSTGGITG 85
D++L E H ++ K++ E P + G + + M C S GG
Sbjct: 170 DAKLAIEKGLHTIDEFKYVPEQCAPLIAHFGRQDGNIAVRCEAEFKKWMSGCGSYGGKNF 229
Query: 86 KMKGRVGDTPIPGSGGYC 103
VGD G GG+
Sbjct: 230 GSPSGVGDMYFHGCGGHT 247
>gnl|CDD|132301 TIGR03257, met_CoM_red_bet, methyl-coenzyme M reductase, beta
subunit. Members of this protein family are the beta
subunit of methyl coenzyme M reductase, also called
coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). This
enzyme, with alpha, beta, and gamma subunits, catalyzes
the last step in methanogenesis. Several methanogens
have encode two such enzymes, designated I and II; this
model does not separate the isozymes [Energy metabolism,
Methanogenesis].
Length = 433
Score = 29.1 bits (65), Expect = 1.9
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 7 GILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPNVTEIGGG 58
G + G G GR + I ++E I E K ++ + EG D NV + GG
Sbjct: 56 GKMGGKGCQIPGRGLNYDVIGNAEAIAEKVKKLVQ--VDEGDDTNVILVKGG 105
>gnl|CDD|226540 COG4054, McrB, Methyl coenzyme M reductase, beta subunit [Coenzyme
metabolism].
Length = 447
Score = 28.6 bits (64), Expect = 2.3
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 7 GILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPNVTEIGGG 58
G + G G GR + L + ++E I E K ++ + E D +V I GG
Sbjct: 63 GKVGGKGCKIPGRELDLDIVENAEAIAEKVKKMVQ--VSEDDDTSVKLINGG 112
>gnl|CDD|226898 COG4509, COG4509, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 244
Score = 28.2 bits (63), Expect = 2.7
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 160 ITVTKCGKVGVYF------NSPKMAWAYIRGTKLHYGIYPGQD 196
+ + G+V V F N + W ++GT + Y I G+D
Sbjct: 50 LMYQQYGEVRVQFDDLLAINKDIVGWLTVKGTHIDYPILQGED 92
>gnl|CDD|185214 PRK15314, PRK15314, outer membrane protein RatB; Provisional.
Length = 2435
Score = 28.7 bits (63), Expect = 3.1
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 55 IGGGGVGTVGAVAVDARGHMVSCTSTGGITGKMKGRVGDTPIPGSGG 101
I G G G V AV +D S T GG+TG+ ++ + P + G
Sbjct: 1072 IAGSGDGIVSAVVIDGDSLNDSATQIGGMTGENGSKIINVTRPDAHG 1118
>gnl|CDD|223936 COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell
envelope biogenesis, outer membrane].
Length = 414
Score = 27.9 bits (63), Expect = 3.5
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 51 NVTEIGGGGVGTVGAVAVDARGHMVSC 77
+T IG G VG V + GH V C
Sbjct: 2 KITVIGTGYVGLVTGACLAELGHEVVC 28
>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid
dehydrogenases. 2-Hydroxyacid dehydrogenases catalyze
the conversion of a wide variety of D-2-hydroxy acids to
their corresponding keto acids. The general mechanism is
(R)-lactate + acceptor to pyruvate + reduced acceptor.
Formate/glycerate and related dehydrogenases of the
D-specific 2-hydroxyacid dehydrogenase superfamily
include groups such as formate dehydrogenase, glycerate
dehydrogenase, L-alanine dehydrogenase, and
S-adenosylhomocysteine hydrolase. Despite often low
sequence identity, these proteins typically have a
characteristic arrangement of 2 similar subdomains of
the alpha/beta Rossmann fold NAD+ binding form. The NAD+
binding domain is inserted within the linear sequence of
the mostly N-terminal catalytic domain, which has a
similar domain structure to the internal NAD binding
domain. Structurally, these domains are connected by
extended alpha helices and create a cleft in which NAD
is bound, primarily to the C-terminal portion of the 2nd
(internal) domain. Some related proteins have similar
structural subdomain but with a tandem arrangement of
the catalytic and NAD-binding subdomains in the linear
sequence. While many members of this family are dimeric,
alanine DH is hexameric and phosphoglycerate DH is
tetrameric.
Length = 334
Score = 28.0 bits (63), Expect = 3.8
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
Query: 102 YCDDNIASVSTTG-HGDSILRYCVA------HRILHYIEQGLSATEASQKALDGMRTRVG 154
Y D + + +G HG I + + H L YIE T ++ + VG
Sbjct: 74 YKDPEVPLCTASGIHGPQIAEWVIGTWLVLSHHFLQYIELQKEQTWGRRQEAYSVEDSVG 133
Query: 155 KTAG 158
K G
Sbjct: 134 KRVG 137
>gnl|CDD|211782 TIGR03064, sortase_srtB, sortase, SrtB family. Members of this
transpeptidase family are, in most cases, designated
sortase B, product of the srtB gene. This protein shows
only distant similarity to the sortase A family, for
which there may be several members in a single bacterial
genome. Typical SrtB substrate motifs include NAKTN,
NPKSS, etc, and otherwise resemble the LPXTG sorting
signals recognized by sortase A proteins [Cell envelope,
Other, Protein fate, Protein and peptide secretion and
trafficking].
Length = 232
Score = 27.7 bits (62), Expect = 3.8
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 159 AITVTKCGKVGVYF------NSPKMAWAYIRGTKLHYGIYPGQD 196
++ G+V F NS + W + GT + Y + G+D
Sbjct: 46 MAKQSEEGEVRKQFEDLLAINSDIVGWITVPGTHIDYPVVQGKD 89
>gnl|CDD|220124 pfam09139, Mmp37, Mitochondrial matrix Mmp37. MMp37 is a
mitochondrial matrix protein that functions in the
translocation of proteins across the mitochondrial inner
membrane. It has been shown that MMP37 proteins possess
the NTase fold but they have only one active site
carboxylate and thus probably are not able to carry out
enzymatic reaction. These potentially non-active members
of NTase fold superfamily may bind ATP, hydrolysis of
which is necessary for the translocation of proteins
through the membrane.
Length = 324
Score = 27.3 bits (61), Expect = 6.1
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 168 VGVYFNSPKMAWAYIRGTKLHYGIYPGQDIEEDLAQ 203
GVYFN I G + YG+ + + +DL
Sbjct: 87 AGVYFNP----LVNINGRLIKYGVVSMETLLKDLLD 118
>gnl|CDD|219362 pfam07285, DUF1444, Protein of unknown function (DUF1444). This
family contains several hypothetical bacterial proteins
of unknown function that are approximately 250 residues
long.
Length = 266
Score = 26.9 bits (60), Expect = 6.8
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 128 ILHYIEQGLSATEASQKALDGMRTRV 153
I++Y+E+ L A + L+G+ R+
Sbjct: 63 IVYYVEEALRAMAGEVEDLNGLEKRI 88
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.136 0.409
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,463,220
Number of extensions: 956545
Number of successful extensions: 975
Number of sequences better than 10.0: 1
Number of HSP's gapped: 956
Number of HSP's successfully gapped: 48
Length of query: 204
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 112
Effective length of database: 6,857,034
Effective search space: 767987808
Effective search space used: 767987808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 57 (25.7 bits)