RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5132
(204 letters)
>4gdv_A L-asparaginase; NTN enzyme, homodimer, hydrolase, L-asparagine;
1.75A {Homo sapiens} PDB: 4gdu_A 4gdt_A 4gdw_A
Length = 310
Score = 226 bits (578), Expect = 1e-74
Identities = 91/201 (45%), Positives = 119/201 (59%), Gaps = 2/201 (0%)
Query: 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPNVTEIGGGGV 60
MEKTPH L+ GA +F MG+P+IP +L+TE K LEK E G
Sbjct: 111 MEKTPHCFLTDQGAAQFAAAMGVPEIPGEKLVTERNKKRLEKEKHEKGAQKTDCQKNLG- 169
Query: 61 GTVGAVAVDARGHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSIL 120
TVGAVA+D +G++ TSTGGI KM GRVGD+P G+GGY D++I +VSTTGHG+SIL
Sbjct: 170 -TVGAVALDCKGNVAYATSTGGIVNKMVGRVGDSPCLGAGGYADNDIGAVSTTGHGESIL 228
Query: 121 RYCVAHRILHYIEQGLSATEASQKALDGMRTRVGKTAGAITVTKCGKVGVYFNSPKMAWA 180
+ +A L +IEQG + EA+ +L M++RV G I V+K G + S M WA
Sbjct: 229 KVNLARLTLFHIEQGKTVEEAADLSLGYMKSRVKGLGGLIVVSKTGDWVAKWTSTSMPWA 288
Query: 181 YIRGTKLHYGIYPGQDIEEDL 201
+ KLH+GI P DL
Sbjct: 289 AAKDGKLHFGIDPDDTTITDL 309
>3c17_A L-asparaginase precursor; isoaspartyl peptidase, NTN-hydrolase,
autoprot precursor, hydrolase; 1.95A {Escherichia coli}
PDB: 2zak_A
Length = 320
Score = 197 bits (503), Expect = 4e-63
Identities = 63/202 (31%), Positives = 99/202 (49%), Gaps = 6/202 (2%)
Query: 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPN----VTEIG 56
ME++PH ++ G+GA F G+ ++ T L EG
Sbjct: 113 MEQSPHVMMIGEGAENFAFARGMERVSPEIFSTSLRYEQLLAARKEGATVLDHSGAPLDE 172
Query: 57 GGGVGTVGAVAVDARGHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHG 116
+G VGAVA+D G++ + TSTGG+T K+ GRVGD+P+ G+G Y ++ +VS TG G
Sbjct: 173 KQKMGAVGAVALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTG 232
Query: 117 DSILRYCVAHRILHYIEQ-GLSATEASQKALDGMRTRVGKTAGAITVTKCGKVGVYFNSP 175
+ +R A+ I ++ GLS EA ++ + +G + G I + G V + FN+
Sbjct: 233 EVFIRALAAYDIAALMDYGGLSLAEACERVVMEKLPALGGSGGLIAIDHEGNVALPFNTE 292
Query: 176 KMAWAYIR-GTKLHYGIYPGQD 196
M A+ G GIY +
Sbjct: 293 GMYRAWGYAGDTPTTGIYREKG 314
>1p4k_A N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase; alpha beta, beta
alpha, sandwich, hydrolase; 1.90A {Elizabethkingia
meningoseptica} SCOP: d.153.1.5 PDB: 1p4v_A 9gaa_A
9gaf_A 9gac_A 3ljq_A 2gl9_A* 1ayy_A 2gaw_A 2gac_A*
2gaw_B 1ayy_B 2gl9_B* 2gac_B*
Length = 295
Score = 178 bits (454), Expect = 4e-56
Identities = 58/192 (30%), Positives = 98/192 (51%), Gaps = 13/192 (6%)
Query: 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPNVTEIGGGGV 60
MEKTPH +L GDGA EF G + L+T ++ +++L Q + I
Sbjct: 96 MEKTPHVMLVGDGALEFALSQGFKKEN---LLTAESEKEWKEWLKTSQYKPIVNIENHN- 151
Query: 61 GTVGAVAVDARGHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSIL 120
T+G +A+DA+G++ +T G+ KM GRVGD+PI G+G + D+ I + + TGHG+ ++
Sbjct: 152 -TIGMIALDAQGNLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGHGEEVI 210
Query: 121 RYCVAHRILHYIEQGLSATEASQKALDGMRTRVGK--------TAGAITVTKCGKVGVYF 172
R H ++ + QG + +A ++A++ + V + G I + K G+ G Y
Sbjct: 211 RTVGTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYC 270
Query: 173 NSPKMAWAYIRG 184
+A
Sbjct: 271 IQDGFNFAVHDQ 282
>1k2x_B Putative L-asparaginase; NTN hydrolase, asparginase,
autoproteolysis, hydrolase; HET: CME; 1.65A {Escherichia
coli} SCOP: d.153.1.5 PDB: 1jn9_B* 1t3m_B 2zal_B
Length = 143
Score = 147 bits (374), Expect = 5e-46
Identities = 50/137 (36%), Positives = 77/137 (56%), Gaps = 2/137 (1%)
Query: 62 TVGAVAVDARGHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSILR 121
TVGAVA+D G++ + TSTGG+T K+ GRVGD+P+ G+G Y ++ +VS TG G+ +R
Sbjct: 1 TVGAVALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFIR 60
Query: 122 YCVAHRILHYIEQ-GLSATEASQKALDGMRTRVGKTAGAITVTKCGKVGVYFNSPKMAWA 180
A+ I ++ GLS EA ++ + +G + G I + G V + FN+ M A
Sbjct: 61 ALAAYDIAALMDYGGLSLAEACERVVMEKLPALGGSGGLIAIDHEGNVALPFNTEGMYRA 120
Query: 181 YIR-GTKLHYGIYPGQD 196
+ G GIY +
Sbjct: 121 WGYAGDTPTTGIYREKG 137
>2a8j_A Taspase 1, threonine aspartase 1; MLL, glycosylspraginase,
asparaginase, hydrolase; 1.90A {Homo sapiens} PDB:
2a8i_A 2a8m_A 2a8l_A
Length = 420
Score = 153 bits (389), Expect = 3e-45
Identities = 44/229 (19%), Positives = 82/229 (35%), Gaps = 44/229 (19%)
Query: 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQ------------ 48
+ P L G+GA + G+P P + + T + A ++ + +
Sbjct: 157 AGRIPPCFLVGEGAYRWAVDHGIPSCPPNIMTTRFSLAAFKRNKRKLELAERVDTDFMQL 216
Query: 49 ----DPNVTEIGGGGVGTVGAVAVDARGHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCD 104
+ E G + TVGAV VD G++ + S+GG+ K GRVG + G G + +
Sbjct: 217 KKRRQSSEKENDSGTLDTVGAVVVDHEGNVAAAVSSGGLALKHPGRVGQAALYGCGCWAE 276
Query: 105 DNI------ASVSTTGHGDSILRYCVAHRILHYIEQGLSATEASQKALD------GMRTR 152
+ +VST+G G+ ++R +A H ++ + + + + +
Sbjct: 277 NTGAHNPYSTAVSTSGCGEHLVRTILARECSHALQAEDAHQALLETMQNKFISSPFLASE 336
Query: 153 VGKTAGAITVTKCGKVGVY----------------FNSPKMAWAYIRGT 185
G G I + C + M Y+
Sbjct: 337 DGVLGGVIVLRSCRCSAEPDSSQNKQTLLVEFLWSHTTESMCVGYMSAQ 385
>1apy_B Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG
BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_B*
Length = 141
Score = 142 bits (361), Expect = 5e-44
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
Query: 62 TVGAVAVDARGHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSILR 121
T+G V + GH+ + TST GI K+ GRVGD+PIPG+G Y DD + + TG+GD ++R
Sbjct: 1 TIGMVVIHKTGHIAAGTSTNGIKFKIHGRVGDSPIPGAGAYADDTAGAAAATGNGDILMR 60
Query: 122 YCVAHRILHYIEQGLSATEASQKALDGMRTRVGKTAGA-ITVTKCGKVGVYFNSPKMAWA 180
+ +++ + Y+ +G T A QK + ++ + GA I G G N
Sbjct: 61 FLPSYQAVEYMRRGEDPTIACQKVISRIQKHFPEFFGAVICANVTGSYGAACNKLSTFTQ 120
Query: 181 Y 181
+
Sbjct: 121 F 121
>2gez_B L-asparaginase beta subunit; isoaspartyl aminopeptidase,
NTN-hydrolase, autoproteolysis, taspase, sodium binding,
hydrolase; 2.60A {Lupinus luteus}
Length = 133
Score = 135 bits (341), Expect = 4e-41
Identities = 52/134 (38%), Positives = 74/134 (55%), Gaps = 5/134 (3%)
Query: 62 TVGAVAVDARGHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSILR 121
TVG VAVD+ G++ S TSTGG+ KM GR+GDTP+ G+G Y ++ A VS TG G+ I+R
Sbjct: 1 TVGCVAVDSHGNLASATSTGGLVNKMVGRIGDTPLIGAGTYANELCA-VSATGKGEEIIR 59
Query: 122 YCVAHRILHYIE-QGLSATEASQKALDGMRTRVGKTAGAITVTKCGKVGVYFNSPKMAWA 180
VA + +E +GLS EA+ + T G I V+ G++ + FN+ M A
Sbjct: 60 ATVARDVAALMEFKGLSLKEAADFVI--HERTPKGTVGLIAVSAAGEIAMPFNTTGMFRA 117
Query: 181 YIR-GTKLHYGIYP 193
I+P
Sbjct: 118 CATEDGYSEIAIWP 131
>1k2x_A Putative L-asparaginase; NTN hydrolase, asparginase,
autoproteolysis, hydrolase; HET: CME; 1.65A {Escherichia
coli} SCOP: d.153.1.5 PDB: 1jn9_A* 1t3m_A 2zal_A
Length = 177
Score = 55.1 bits (133), Expect = 5e-10
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQ 48
ME++PH ++ G+GA F G+ ++ T L EG
Sbjct: 113 MEQSPHVMMIGEGAENFAFARGMERVSPEIFSTSLRYEQLLAARKEGA 160
>2gez_A L-asparaginase alpha subunit; isoaspartyl aminopeptidase,
NTN-hydrolase, autoproteolysis, taspase, sodium binding,
hydrolase; 2.60A {Lupinus luteus}
Length = 195
Score = 55.5 bits (134), Expect = 6e-10
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFL 44
M+KTPH L+ GA +F ++ G+ + S LIT L+ +
Sbjct: 116 MDKTPHIYLAFQGAQDFAKQQGVETVDSSHLITAENVERLKLAI 159
>1apy_A Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG
BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_A*
Length = 162
Score = 50.5 bits (121), Expect = 2e-08
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPN 51
+E T H +L G+ A F + MG L T ++ +L PN
Sbjct: 96 LEHTTHTLLVGESATTFAQSMGFINED---LSTSASQALHSDWLARNCQPN 143
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural
genomics, PSI-2, protein structure initiative; 2.30A
{Shigella flexneri 2A} SCOP: c.94.1.1
Length = 231
Score = 27.6 bits (61), Expect = 2.2
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 9/53 (16%)
Query: 4 TPHGILSGDGANEFGRRMGL-PQIPDSELITENAKHALEKFLCEGQDPNVTEI 55
H ++ G + +R+GL + D +++T+ D ++
Sbjct: 98 GEHQLICRKGESGNVKRVGLDSRSADQKIMTDVF--------FGDSDVERVDL 142
>1kqr_A VP4; spike protein, outer capsid, sialic AC hemagglutinin, cell
attachment, neutralization antigen, LEC galectin fold,
viral protein; HET: MNA; 1.40A {Rhesus rotavirus} SCOP:
b.29.1.14 PDB: 2p3k_A* 2p3i_A* 2p3j_A* 3sit_A* 3sis_A*
2i2s_A*
Length = 179
Score = 26.4 bits (58), Expect = 5.0
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 78 TSTGGITGKMK--GRV----GDTPIPGSGGYCDDNIASVSTTGHGD 117
ST + MK G++ G+TP + Y N SV+ T D
Sbjct: 114 QSTPKLYAVMKHNGKIYTYNGETPNVTTKYYSTTNYDSVNMTAFCD 159
>1rz2_A Conserved hypothetical protein BA4783; sortase B protein, B.
anthracis, structural genomics, PSI, P structure
initiative; 1.60A {Bacillus anthracis} SCOP: b.100.1.1
PDB: 2oqz_A* 2oqw_A*
Length = 254
Score = 26.5 bits (58), Expect = 6.9
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 173 NSPKMAWAYIRGTKLHYGIYPGQDIEEDL 201
N + W + T+++Y I +D + L
Sbjct: 78 NQEIVGWITMDDTQINYPIVQAKDNDYYL 106
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.2 bits (57), Expect = 9.5
Identities = 16/89 (17%), Positives = 25/89 (28%), Gaps = 47/89 (52%)
Query: 134 QGLSATEASQKALDGMRTRVGKTAGAITVTKCGKVGVYFNSP--KMAW----AYIRGT-- 185
QG SQ+ GM G +Y S + W + + T
Sbjct: 1624 QG------SQEQ--GM----GMD-------------LYKTSKAAQDVWNRADNHFKDTYG 1658
Query: 186 --------------KLHYGIYPGQDIEED 200
+H+G G+ I E+
Sbjct: 1659 FSILDIVINNPVNLTIHFGGEKGKRIREN 1687
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.136 0.409
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,286,019
Number of extensions: 199233
Number of successful extensions: 566
Number of sequences better than 10.0: 1
Number of HSP's gapped: 550
Number of HSP's successfully gapped: 35
Length of query: 204
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 115
Effective length of database: 4,216,824
Effective search space: 484934760
Effective search space used: 484934760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 55 (24.9 bits)