RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5132
(204 letters)
>g1apy.1 d.153.1.5 (A:,B:) Glycosylasparaginase
(aspartylglucosaminidase, AGA) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 302
Score = 127 bits (321), Expect = 1e-36
Identities = 58/209 (27%), Positives = 91/209 (43%), Gaps = 16/209 (7%)
Query: 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPNVT------- 53
+E T H +L G+ A F + MG L T ++ +L PN
Sbjct: 95 LEHTTHTLLVGESATTFAQSMGFINED---LSTSASQALHSDWLARNCQPNYWRNVIPDP 151
Query: 54 --EIGGGGVGTVGAVAVDARGHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVS 111
G T+G V + GH+ + TST GI K+ GRVGD+PIPG+G Y DD + +
Sbjct: 152 SKYCGPYKPPTIGMVVIHKTGHIAAGTSTNGIKFKIHGRVGDSPIPGAGAYADDTAGAAA 211
Query: 112 TTGHGDSILRYCVAHRILHYIEQGLSATEASQKALDGMRTRVGK-TAGAITVTKCGKVGV 170
TG+GD ++R+ +++ + Y+ +G T A QK + ++ + I G G
Sbjct: 212 ATGNGDILMRFLPSYQAVEYMRRGEDPTIACQKVISRIQKHFPEFFGAVICANVTGSYGA 271
Query: 171 YFNSPKMAWAYIRGTKLHYGIYPGQDIEE 199
N + + + Y Q EE
Sbjct: 272 ACNKLSTFTQF---SFMVYNSEKNQPTEE 297
>g2gac.1 d.153.1.5 (A:,B:) Glycosylasparaginase
(aspartylglucosaminidase, AGA) {Flavobacterium
meningosepticum [TaxId: 238]}
Length = 275
Score = 117 bits (294), Expect = 5e-33
Identities = 55/192 (28%), Positives = 93/192 (48%), Gaps = 26/192 (13%)
Query: 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPNVTEIGGGGV 60
MEKTPH +L GDGA EF G L+T ++ +++L
Sbjct: 94 MEKTPHVMLVGDGALEFALSQGFK---KENLLTAESEKEWKEWLKT-------------- 136
Query: 61 GTVGAVAVDARGHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSIL 120
+G +A+DA+G++ +T G+ KM GRVGD+PI G+G + D+ I + + TGHG+ ++
Sbjct: 137 -CIGMIALDAQGNLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGHGEEVI 195
Query: 121 RYCVAHRILHYIEQGLSATEASQKALDGMRTRVGK--------TAGAITVTKCGKVGVYF 172
R H ++ + QG + +A ++A++ + V + G I + K G+ G Y
Sbjct: 196 RTVGTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYC 255
Query: 173 NSPKMAWAYIRG 184
+A
Sbjct: 256 IQDGFNFAVHDQ 267
>g1k2x.1 d.153.1.5 (A:,B:) Glycosylasparaginase
(aspartylglucosaminidase, AGA) {Escherichia coli [TaxId:
562]}
Length = 291
Score = 116 bits (292), Expect = 1e-32
Identities = 61/194 (31%), Positives = 95/194 (48%), Gaps = 19/194 (9%)
Query: 1 MEKTPHGILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPNVTEIGGGGV 60
ME++PH ++ G+GA F G+ ++ T L
Sbjct: 113 MEQSPHVMMIGEGAENFAFARGMERVSPEIFSTSLRYEQLLAA----------------- 155
Query: 61 GTVGAVAVDARGHMVSCTSTGGITGKMKGRVGDTPIPGSGGYCDDNIASVSTTGHGDSIL 120
TVGAVA+D G++ + TSTGG+T K+ GRVGD+P+ G+G Y ++ +VS TG G+ +
Sbjct: 156 RTVGAVALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGCYANNASVAVSCTGTGEVFI 215
Query: 121 RYCVAHRILHYIE-QGLSATEASQKALDGMRTRVGKTAGAITVTKCGKVGVYFNSPKMAW 179
R A+ I ++ GLS EA ++ + +G + G I + G V + FN+ M
Sbjct: 216 RALAAYDIAALMDYGGLSLAEACERVVMEKLPALGGSGGLIAIDHEGNVALPFNTEGMYR 275
Query: 180 AYIR-GTKLHYGIY 192
A+ G GIY
Sbjct: 276 AWGYAGDTPTTGIY 289
>d1hbnb2 d.58.31.2 (B:2-188) Beta chain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 187
Score = 31.3 bits (71), Expect = 0.045
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 7 GILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPNVTEIGGG 58
+ G GR + L + ++E I AK ++ + E D NV +GGG
Sbjct: 59 AKVGGPACKIMGRELDLDIVGNAESIAAAAKEMIQ--VTEDDDTNVELLGGG 108
>d1e6yb2 d.58.31.2 (B:2002-2185) Beta chain {Archaeon Methanosarcina
barkeri [TaxId: 2208]}
Length = 184
Score = 31.3 bits (71), Expect = 0.053
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 7 GILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPNVTEIGGG 58
G + G G GR + + +++ I EN K ++ + EG D NV ++ GG
Sbjct: 56 GKMGGKGRQILGRGLNYDIVGNADAIAENVKKLVQ--VDEGDDTNVIKVKGG 105
>d1e6vb2 d.58.31.2 (B:7-189) Beta chain {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 183
Score = 30.9 bits (70), Expect = 0.066
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 7 GILSGDGANEFGRRMGLPQIPDSELITENAKHALEKFLCEGQDPNVTEIGGG 58
+ G G GR M + + ++E I + + + + + D NV + G
Sbjct: 55 ATVGGKGMKIPGREMDVDIVDNAEAIADEIEKMIR--VYQDDDTNVEPMYDG 104
>d2oqza1 b.100.1.1 (A:35-253) Hypothetical protein BA4783 {Bacillus
anthracis [TaxId: 1392]}
Length = 219
Score = 27.3 bits (60), Expect = 1.2
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 173 NSPKMAWAYIRGTKLHYGIYPGQDIEEDL 201
N + W + T+++Y I +D + L
Sbjct: 44 NQEIVGWITMDDTQINYPIVQAKDNDYYL 72
>d1kqra_ b.29.1.14 (A:) vp4 sialic acid binding domain {Rhesus
rotavirus [TaxId: 10969]}
Length = 160
Score = 25.1 bits (55), Expect = 4.4
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 78 TSTGGITGKMK--GRV----GDTPIPGSGGYCDDNIASVSTTGHGD 117
ST + MK G++ G+TP + Y N SV+ T D
Sbjct: 95 QSTPKLYAVMKHNGKIYTYNGETPNVTTKYYSTTNYDSVNMTAFCD 140
>d1kyfa2 d.105.1.1 (A:825-938) Alpa-adaptin AP2, C-terminal
subdomain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 114
Score = 24.7 bits (54), Expect = 5.0
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 29 SELITENAKHALEKF---LCEGQDPNVTEIGGGGV 60
+ TE K + F L E DPN G G+
Sbjct: 34 HPMDTEITKAKIIGFGSALLEEVDPNPANFVGAGI 68
>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline
dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
Length = 184
Score = 24.9 bits (53), Expect = 7.7
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 51 NVTEIGGGGVGTVGAVAVDARGHMVSC 77
+G G G A + +G V
Sbjct: 3 TYAVLGLGNGGHAFAAYLALKGQSVLA 29
>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 197
Score = 24.8 bits (54), Expect = 7.7
Identities = 5/34 (14%), Positives = 8/34 (23%)
Query: 132 IEQGLSATEASQKALDGMRTRVGKTAGAITVTKC 165
+GL + GA V +
Sbjct: 22 DGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARA 55
>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase
{Bacillus smithii [TaxId: 1479]}
Length = 203
Score = 24.7 bits (54), Expect = 8.4
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 132 IEQGLSATEASQKALDGMRTRVGKTAGAITVTKC 165
IE+ L +++A ++ + +G GA V K
Sbjct: 27 IEKRLLSSDAIERVIKHYEHELGPMNGAKVVAKA 60
>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase
{Pseudonocardia thermophila [TaxId: 1848]}
Length = 203
Score = 24.3 bits (53), Expect = 9.0
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 132 IEQGLSATEASQKALDGMRTRVGKTAGAITVTKC 165
IEQG+ T + + VG GA V K
Sbjct: 28 IEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKA 61
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.136 0.409
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 790,039
Number of extensions: 35337
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 20
Length of query: 204
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,295,466
Effective search space: 159342318
Effective search space used: 159342318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 51 (23.8 bits)