BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5133
(313 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P28518|XPA_DROME DNA repair protein complementing XP-A cells homolog OS=Drosophila
melanogaster GN=Xpac PE=2 SV=3
Length = 296
Score = 229 bits (584), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 127/301 (42%), Positives = 180/301 (59%), Gaps = 36/301 (11%)
Query: 19 LSAMQKEQIERNRQRAIQIQQTRTRDLYDPYPNPVKAGVRQTASAPSSCPQSPNLRSTTR 78
L+ QK +IERN+ +A ++++ + V ++ AS N T
Sbjct: 20 LTNAQKARIERNQAKAQKLREAKL----------VSHPFKELAS---------NKEGGTH 60
Query: 79 LGGARSPGTIRSIINAVGSKLFTDTGGGFLLD-------YDDKYEEKYIKQPAPLL---- 127
A S G+ S+I G+K + D+GGGFLL+ K ++ P+L
Sbjct: 61 PEAALSQGS--SVIKVQGTK-YIDSGGGFLLEQPVMPTGVGPAGLNKSGEEAPPILDDAI 117
Query: 128 -LESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLD 186
+ + C+EC F S+L++ FGHSVCD CRD + ++ L+TRT+AK EYLLKDCD D
Sbjct: 118 AIPVQYEECLECGDMFADSYLFNNFGHSVCDKCRDKDERYALITRTEAKAEYLLKDCDFD 177
Query: 187 KREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEKASNSKL 246
KREP LR++ KNPHN WG+MKLYL LQ+ QRA+EVWGSEEEL ++ E R +K K
Sbjct: 178 KREPKLRYISRKNPHNVRWGEMKLYLHLQIHQRALEVWGSEEELVRQHEAREDKREEGKA 237
Query: 247 KQYNKKIKALRMAVRSSLFNKISTSPSSHSHQFGMEVHNEEDDTYTRKCSTCDFEETFEK 306
++YNKK+K LRM VRSS++ K + H H+FG + ++EE+DTYT C TC + ET+EK
Sbjct: 238 RKYNKKMKQLRMEVRSSIYTK--KTHEVHEHEFGPDTYDEEEDTYTHTCITCPYSETYEK 295
Query: 307 I 307
+
Sbjct: 296 M 296
>sp|P27088|XPA_XENLA DNA repair protein complementing XP-A cells homolog OS=Xenopus
laevis GN=xpa PE=2 SV=1
Length = 267
Score = 212 bits (540), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 129/292 (44%), Positives = 172/292 (58%), Gaps = 46/292 (15%)
Query: 19 LSAMQKEQIERNRQRAIQIQQTRTRDLYDPYPNPVKAGVRQTASAPSSCPQSPNLRSTTR 78
LSA + +IERNRQRA+ ++Q R P P G+ T AP
Sbjct: 19 LSAAVRAKIERNRQRALMLRQARLA----CRPYPTGEGI-STVKAP-------------- 59
Query: 79 LGGARSPGTIRSIINAVGSKLFTDTGGGFLLDYDD---KYEEKYIKQPAPLLLESEQPTC 135
P I D+GGGF ++ ++ ++ E ++QP P+L E + C
Sbjct: 60 ------PKVI-------------DSGGGFFIEEEEAEEQHVENVVRQPGPVL-ECDYLIC 99
Query: 136 VECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFL 195
EC K F S+L + F +VCDSCRD E KH L+TRT+AK EYLLKDCD+DKREPVL+F+
Sbjct: 100 EECGKDFMDSYLSNHFDLAVCDSCRDAEEKHKLITRTEAKQEYLLKDCDIDKREPVLKFI 159
Query: 196 RAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEKASNSKLKQYNKKIKA 255
KNPHN HWGDMKLYL QV +R++EVWGSEE LE+ +E R + K K+++KK+K
Sbjct: 160 LKKNPHNTHWGDMKLYLKAQVIKRSLEVWGSEEALEEAKEVRKDNRDKMKQKKFDKKVKE 219
Query: 256 LRMAVRSSLFNKISTSPSSHSHQFGMEVHNEEDDTYTRKCSTCDFEETFEKI 307
LR VRSSL+ K S H H++G E H EE D+Y + C TC +E +EK+
Sbjct: 220 LRRTVRSSLWKK---EASGHQHEYGPEEHVEE-DSYKKTCITCGYEMNYEKM 267
>sp|P27089|XPA_CHICK DNA repair protein complementing XP-A cells homolog OS=Gallus
gallus GN=XPA PE=2 SV=1
Length = 267
Score = 208 bits (530), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 106/212 (50%), Positives = 146/212 (68%), Gaps = 11/212 (5%)
Query: 102 DTGGGFLLDYDD------KYEEKYIKQPAPLLLESEQPTCVECKKKFPQSFLYDKFGHSV 155
DTGGGF L+ ++ + E+ + PAP+L + + C +C K+F S+L F +
Sbjct: 61 DTGGGFFLEEEEEEEEQRRAAERIVHPPAPVL-QFDYLICGDCGKEFMDSYLMQHFDWAT 119
Query: 156 CDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQ 215
CD+CRD E KH L+TRT+AK EYLLKDCDLDKREPVLRF+ KNPHN WGDMKLYL LQ
Sbjct: 120 CDNCRDAEDKHKLITRTEAKEEYLLKDCDLDKREPVLRFIVKKNPHNPRWGDMKLYLKLQ 179
Query: 216 VEQRAIEVWGSEEELEQERERRAEKASNSKLKQYNKKIKALRMAVRSSLFNKISTSPSSH 275
V +RA+EVWG+EE L++ +E+R + K K+++KK+K LR AVRSSL+ K + S H
Sbjct: 180 VIKRALEVWGNEESLQEAKEQRRDSREKMKQKRFDKKVKELRRAVRSSLWKKTA---SIH 236
Query: 276 SHQFGMEVHNEEDDTYTRKCSTCDFEETFEKI 307
H++G E N +++TY + C+ C E T+EK+
Sbjct: 237 EHEYGPE-ENVDEETYKKTCTVCGHELTYEKM 267
>sp|P23025|XPA_HUMAN DNA repair protein complementing XP-A cells OS=Homo sapiens GN=XPA
PE=1 SV=1
Length = 273
Score = 188 bits (478), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 118/292 (40%), Positives = 168/292 (57%), Gaps = 41/292 (14%)
Query: 19 LSAMQKEQIERNRQRAIQIQQTRTRDLYDPYPNPVKAGVRQTASAPSSCPQSPNLRSTTR 78
L A + IER RQRA+ ++Q R A+ P S +
Sbjct: 20 LPASVRASIERKRQRALMLRQARL------------------AARPYSATAAAATGGMAN 61
Query: 79 LGGARSPGTIRSIINAVGSKLFTDTGGGFLLDYDDKYEEK---YIKQPAPLLLESEQPTC 135
+ A P I DTGGGF+L+ +++ E+K + QP P++ E + C
Sbjct: 62 VKAA--PKII-------------DTGGGFILEEEEEEEQKIGKVVHQPGPVM-EFDYVIC 105
Query: 136 VECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFL 195
EC K+F S+L + F CD+CRD + KH L+T+T+AK EYLLKDCDL+KREP L+F+
Sbjct: 106 EECGKEFMDSYLMNHFDLPTCDNCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFI 165
Query: 196 RAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEKASNSKLKQYNKKIKA 255
KNPH+ WGDMKLYL LQ+ +R++EVWGS+E LE+ +E R E K K+++KK+K
Sbjct: 166 VKKNPHHSQWGDMKLYLKLQIVKRSLEVWGSQEALEEAKEVRQENREKMKQKKFDKKVKE 225
Query: 256 LRMAVRSSLFNKISTSPSSHSHQFGMEVHNEEDDTYTRKCSTCDFEETFEKI 307
LR AVRSS++ + + H H++G E N EDD Y + C+ C E T+EK+
Sbjct: 226 LRRAVRSSVWKRETI---VHQHEYGPE-ENLEDDMYRKTCTMCGHELTYEKM 273
>sp|Q64267|XPA_MOUSE DNA repair protein complementing XP-A cells homolog OS=Mus musculus
GN=Xpa PE=1 SV=2
Length = 272
Score = 187 bits (476), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 117/291 (40%), Positives = 162/291 (55%), Gaps = 42/291 (14%)
Query: 19 LSAMQKEQIERNRQRAIQIQQTRTRDLYDPYPNPVKAGVRQTASAPSSCPQSPNLRSTTR 78
L A + +ER RQRA+ ++Q R P GV +AP
Sbjct: 22 LPAAVRASVERKRQRALMLRQARLAARPYPAAAAT-GGVASVKAAPK------------- 67
Query: 79 LGGARSPGTIRSIINAVGSKLFTDTGGGFLLDYDDKYEE--KYIKQPAPLLLESEQPTCV 136
DT GGF+L+ +++ E + +P P++ E + C
Sbjct: 68 ---------------------MIDTKGGFILEEEEEKHEIGNIVHEPGPVM-EFDYTICE 105
Query: 137 ECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLR 196
EC K+F S+L + F CDSCRD + KH L+T+T+AK EYLLKDCDL+KREP LRFL
Sbjct: 106 ECGKEFMDSYLMNHFDLPTCDSCRDADDKHKLITKTEAKQEYLLKDCDLEKREPALRFLV 165
Query: 197 AKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEKASNSKLKQYNKKIKAL 256
KNP + WGDMKLYL LQV +RA+EVWGS+E LE +E R E K K+++KK+K L
Sbjct: 166 KKNPRHSQWGDMKLYLKLQVVKRALEVWGSQEALEDAKEVRQENREKMKQKKFDKKVKEL 225
Query: 257 RMAVRSSLFNKISTSPSSHSHQFGMEVHNEEDDTYTRKCSTCDFEETFEKI 307
R A+RSS++ + +T +H H++G E N EDD Y + C+ C E T+EK+
Sbjct: 226 RRAIRSSVWKRETT---THQHKYGPE-ENLEDDMYRKTCTLCGHELTYEKM 272
>sp|Q64029|XPA_CRIGR DNA repair protein complementing XP-A cells homolog (Fragment)
OS=Cricetulus griseus GN=XPA PE=3 SV=1
Length = 97
Score = 127 bits (320), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 58/95 (61%), Positives = 72/95 (75%)
Query: 145 SFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKH 204
S+L + F CDSCRD + KH L+T+T+AK EYLLKDCDL+KREP LRF+ KNP +
Sbjct: 1 SYLMNHFDLPTCDSCRDADDKHKLITKTEAKQEYLLKDCDLEKREPALRFIVKKNPRHSQ 60
Query: 205 WGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAE 239
WGDMKLYL LQV +RA+EVWGS++ LE +E R E
Sbjct: 61 WGDMKLYLKLQVVKRALEVWGSQDALEDAKEVRQE 95
>sp|O59753|RAD14_SCHPO DNA repair protein rad14 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rhp14 PE=3 SV=1
Length = 289
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 105/201 (52%), Gaps = 23/201 (11%)
Query: 102 DTGGGFLLDYDDKYEEKYIKQPA-----------------PLLLESE-QPTCVECKKKFP 143
DT GG+LL+ +K E ++PA PL L+ E P C EC
Sbjct: 67 DTKGGYLLE--EKKVEDLREKPAERELREQEERQKKLRLAPLNLDPETAPKCFECDSIEL 124
Query: 144 QSFLYDKFGHSVCDSCRDG-ESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHN 202
+ +D F VC +CR+ K+ L+T+T+ K +YLL + +L +E + R L+A NPH
Sbjct: 125 DTKYFDIFHCRVCHTCREKYPDKYSLLTKTECKLDYLLTEPELQDQELLPRLLKA-NPHQ 183
Query: 203 KHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEKASNSKLKQYNKKIKALRMAVRS 262
+ W +M LYL QVE+ A + WGS E L+ E ERR + K K++ K++ LR R+
Sbjct: 184 QGWSNMMLYLRYQVEEFAKKKWGSMEALDAEFERREVQKKEMKEKKFEKQLLELRKRTRT 243
Query: 263 SLFNKIST-SPSSHSHQFGME 282
S ++++S H H + E
Sbjct: 244 SNYSRMSIREKRKHVHSYDEE 264
>sp|P53709|RAD14_CANAL DNA repair protein RAD14 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=RAD14 PE=3 SV=2
Length = 396
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 138/310 (44%), Gaps = 41/310 (13%)
Query: 19 LSAMQKEQIERNRQRAIQIQQT-----RTRDLYDPYPNPVKAGVRQTASAPSSCPQSPNL 73
L+ Q+++IE+NR RAI+IQ+ +D PV +R + P S +
Sbjct: 95 LTEEQRQKIEQNRLRAIEIQKNLKQRENQKDDSTTSSKPV-DNIRLNQNRPDSV-----V 148
Query: 74 RSTTRLGGARSPGTIRSIINAVGSKLFTDTGGGFLLD---------------YDDKYEE- 117
ST + + P + DT GGFL D + +K E
Sbjct: 149 SSTKKF---QPPPIRKQDYIEFDFATMKDTKGGFLQDEKTNTQGADEQTLQDWKNKQREL 205
Query: 118 -KYIKQPAPLLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSC-RDGESKHCLVTRTDAK 175
K + P P+ L++ P C EC+ + L F C C + K+ L+T+T+ K
Sbjct: 206 QKIRELPPPIDLQN-IPRCRECQSMEVDANLMTNFNVRACRKCIKALPEKYSLLTKTECK 264
Query: 176 NEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERE 235
+YLL + +L + +L + NPH + M+L++ QVE+ A + WG EEL++E E
Sbjct: 265 EDYLLTEPEL-QDTTLLPRIEKPNPHG--YSRMQLFVRFQVEEFAWKKWGGPEELDKEWE 321
Query: 236 RRAEKASNSKLKQYNKKIKALRMAVRSSLFNKISTSPSS----HSHQFGMEVHNEEDDTY 291
RR E K K+Y+ +++ +R R+ + + S H H + V N + T
Sbjct: 322 RREENKVKRKEKKYHDQLREMRKRTRAEEYTRKLRDGKSLGERHVHDWSSPV-NIDKHTI 380
Query: 292 TRKCSTCDFE 301
R+C C E
Sbjct: 381 KRRCIDCGIE 390
>sp|P28519|RAD14_YEAST DNA repair protein RAD14 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD14 PE=1 SV=2
Length = 371
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 11/192 (5%)
Query: 119 YIKQPAPLLLESEQPTCVECKKKFPQS-FLYDKFGHSVCDSC-RDGESKHCLVTRTDAKN 176
Y P P + S+ P C+EC L+D F VC C ++ K+ L+T+T+ K
Sbjct: 176 YENAPPPEHI-SKAPKCIECHINIEMDPVLHDVFKLQVCKQCSKEHPEKYALLTKTECKE 234
Query: 177 EYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERER 236
+Y L D +L+ E + L NPH+ + M+L++ +VE A + WG EE L++E +R
Sbjct: 235 DYFLTDPELND-EDLFHRLEKPNPHSGTFARMQLFVRCEVEAFAFKKWGGEEGLDEEWQR 293
Query: 237 RAEKASNSKLKQYNKKIKALRMAVRSSLF-NKI--STSPSSHSHQFGMEVHNEED-DTYT 292
R E ++ + K+Y KKIK +R+ R+ + N++ +H H F V D D Y
Sbjct: 294 REEGKAHRREKKYEKKIKEMRLKTRAQEYTNRLREKKHGKAHIHHFSDPVDGGIDEDGYQ 353
Query: 293 ---RKCSTCDFE 301
R+C+ C E
Sbjct: 354 IQRRRCTDCGLE 365
>sp|Q5PQZ3|ZNT9_DANRE Zinc transporter 9 OS=Danio rerio GN=slc30a9 PE=2 SV=1
Length = 573
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 164 SKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEV 223
+++ +T A NE+ LK DL+ LR +R ++PH+ ++L VE +A+EV
Sbjct: 131 TQNNFITAVRAMNEFCLKPSDLEH----LRKIRRRSPHDDT-EAFTVFLRSDVEAKALEV 185
Query: 224 WGSEEELEQERERRAE 239
WGS+E L +ER++R E
Sbjct: 186 WGSQEALARERDQRKE 201
>sp|Q5IRJ6|ZNT9_MOUSE Zinc transporter 9 OS=Mus musculus GN=Slc30a9 PE=1 SV=2
Length = 567
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 164 SKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEV 223
+K+ +T A NE+ LK DL++ LR +R ++PH+ ++L VE +A+EV
Sbjct: 125 TKNNFITGVRAINEFCLKSSDLEQ----LRKIRRRSPHDDT-ESFTVFLRSDVEAKALEV 179
Query: 224 WGSEEELEQERERRAE 239
WGS E L +E++ R E
Sbjct: 180 WGSLEALAREKKLRKE 195
>sp|Q6DCE3|ZNT9_XENLA Zinc transporter 9 OS=Xenopus laevis GN=slc30a9 PE=2 SV=1
Length = 559
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 165 KHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVW 224
K+ +T A NE+ LK DL+ LR +R ++PH+ +YL VE +A EVW
Sbjct: 118 KNNFITGVRALNEFCLKPSDLES----LRKIRRRSPHDDTEA-FTVYLRSDVEAKAYEVW 172
Query: 225 GSEEELEQERERRAEK 240
GS E + +ER+ R E+
Sbjct: 173 GSPEAIFRERKMRKEE 188
>sp|Q5R4H0|ZNT9_PONAB Zinc transporter 9 OS=Pongo abelii GN=SLC30A9 PE=2 SV=1
Length = 569
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 164 SKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEV 223
+++ +T A NE+ LK DL++ LR +R ++PH +YL VE +++EV
Sbjct: 127 TQNNFITGVRAINEFCLKSSDLEQ----LRKIRRRSPHEDT-ESFTVYLRSDVEAKSLEV 181
Query: 224 WGSEEELEQERERRAE 239
WGS E L +E++ R E
Sbjct: 182 WGSPEALAREKKLRKE 197
>sp|Q6PML9|ZNT9_HUMAN Zinc transporter 9 OS=Homo sapiens GN=SLC30A9 PE=1 SV=1
Length = 568
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 164 SKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEV 223
+++ +T A NE+ LK DL++ LR +R ++PH +YL VE +++EV
Sbjct: 126 TQNNFITGVRAINEFCLKSSDLEQ----LRKIRRRSPHEDT-ESFTVYLRSDVEAKSLEV 180
Query: 224 WGSEEELEQERERRAE 239
WGS E L +E++ R E
Sbjct: 181 WGSPEALAREKKLRKE 196
>sp|A6H5Y1|MPP9_MOUSE M-phase phosphoprotein 9 OS=Mus musculus GN=Mphosph9 PE=2 SV=1
Length = 991
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 60/135 (44%), Gaps = 20/135 (14%)
Query: 198 KNPHNKHWGDMKLYLSLQVEQ----------RAIEVWGSEEELEQERERRAEKASN---S 244
K H +H D++ Y ++ A+E W + E+ +R + + A N S
Sbjct: 406 KEKHARHVADLRAYYESEISSLKQKLEAKDISAVEEWKKKNEILADRCGQLDSALNEATS 465
Query: 245 KLKQYNKKIKALRMAVRSSL---FNKISTSPSSHSHQFG-MEVHNEE-DDTYTR-KCSTC 298
+++ K L + V S L FN S++ + M N+E D+T TR KC
Sbjct: 466 RVRTLEKNNNLLEIEV-SDLRERFNAASSASKVLQERIEEMRTSNKEKDNTITRLKCRLQ 524
Query: 299 DFEETFEKIFRLHDD 313
D EE FE ++L DD
Sbjct: 525 DLEEAFENAYKLSDD 539
>sp|A4W6Q1|GSA_ENT38 Glutamate-1-semialdehyde 2,1-aminomutase OS=Enterobacter sp.
(strain 638) GN=hemL PE=3 SV=1
Length = 426
Score = 35.4 bits (80), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 69 QSPNLRSTTR---LGGARSPGTIRSIINAVGSKLFTD-TGGGFLLDYDDKYEEKYIKQPA 124
+S NL S R GG SP +R+ G+ LF + G FL D D K Y+
Sbjct: 3 KSENLYSAARELIPGGVNSP--VRAFTGVGGTPLFIERADGAFLYDVDGKAYIDYVGSWG 60
Query: 125 PLLLESEQPT 134
P++L PT
Sbjct: 61 PMVLGHNHPT 70
>sp|Q5ZVA6|GSA_LEGPH Glutamate-1-semialdehyde 2,1-aminomutase OS=Legionella pneumophila
subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 /
DSM 7513) GN=hemL PE=3 SV=2
Length = 429
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 80 GGARSPGTIRSIINAVGSKLFTDTG-GGFLLDYDDKYEEKYIKQPAPLLLESEQPTCVEC 138
GG SP +R+ G +F +G G +L D DDK Y+ PL+L P +E
Sbjct: 17 GGVNSP--VRAFKGVGGEPVFFKSGKGAYLTDVDDKQYIDYVGSWGPLILGHCHPKVIEA 74
>sp|A5IC29|GSA_LEGPC Glutamate-1-semialdehyde 2,1-aminomutase OS=Legionella pneumophila
(strain Corby) GN=hemL PE=3 SV=1
Length = 429
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 80 GGARSPGTIRSIINAVGSKLFTDTG-GGFLLDYDDKYEEKYIKQPAPLLLESEQPTCVEC 138
GG SP +R+ G +F +G G +L D DDK Y+ PL+L P +E
Sbjct: 17 GGVNSP--VRAFKGVGGEPVFFKSGKGAYLTDVDDKQYIDYVGSWGPLILGHCHPKVIEA 74
>sp|Q5X529|GSA_LEGPA Glutamate-1-semialdehyde 2,1-aminomutase OS=Legionella pneumophila
(strain Paris) GN=hemL PE=3 SV=1
Length = 428
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 80 GGARSPGTIRSIINAVGSKLFTDTG-GGFLLDYDDKYEEKYIKQPAPLLLESEQPTCVEC 138
GG SP +R+ G +F +G G +L D DDK Y+ PL+L P +E
Sbjct: 17 GGVNSP--VRAFKGVGGEPVFFKSGKGAYLTDVDDKQYIDYVGSWGPLILGHCHPKVIEA 74
>sp|Q5WWG1|GSA_LEGPL Glutamate-1-semialdehyde 2,1-aminomutase OS=Legionella pneumophila
(strain Lens) GN=hemL PE=3 SV=1
Length = 429
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 80 GGARSPGTIRSIINAVGSKLFTDTG-GGFLLDYDDKYEEKYIKQPAPLLLESEQPTCVEC 138
GG SP +R+ G +F +G G +L D DDK Y+ PL+L P +E
Sbjct: 17 GGVNSP--VRAFKGVGGEPVFFKSGKGAYLTDVDDKQYIDYVGSWGPLILGHCHPKVIEA 74
>sp|Q9M367|BECN1_ARATH Beclin-1-like protein OS=Arabidopsis thaliana GN=At3g61710 PE=2
SV=2
Length = 517
Score = 31.6 bits (70), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 129 ESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDL 185
+ EQP C+EC + L DK V D RD E+ V R + + + +L + D
Sbjct: 166 QVEQPLCLECMR-----VLSDKLEKEVEDVTRDVEAYEACVQRLEGETQDVLSEADF 217
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,210,406
Number of Sequences: 539616
Number of extensions: 4922677
Number of successful extensions: 18706
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 18639
Number of HSP's gapped (non-prelim): 70
length of query: 313
length of database: 191,569,459
effective HSP length: 117
effective length of query: 196
effective length of database: 128,434,387
effective search space: 25173139852
effective search space used: 25173139852
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)