Query psy5133
Match_columns 313
No_of_seqs 191 out of 244
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 18:11:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1d4u_A Nucleotide excision rep 100.0 7.1E-48 2.4E-52 319.4 6.2 111 126-238 1-111 (111)
2 2enk_A HUEL, solute carrier fa 100.0 3.3E-33 1.1E-37 227.9 4.8 85 163-252 9-93 (101)
3 2p57_A GTPase-activating prote 47.3 3.7 0.00013 35.1 -0.2 28 133-161 38-65 (144)
4 2crw_A ARF GAP 3, ADP-ribosyla 46.7 4.5 0.00015 34.7 0.2 28 133-161 30-57 (149)
5 3dwd_A ADP-ribosylation factor 46.0 4.4 0.00015 34.8 0.0 28 133-161 39-66 (147)
6 3o47_A ADP-ribosylation factor 45.3 4.7 0.00016 37.2 0.1 28 133-161 38-65 (329)
7 2gmg_A Hypothetical protein PF 45.2 7.9 0.00027 31.5 1.5 25 133-162 68-93 (105)
8 1dcq_A PYK2-associated protein 45.1 4.3 0.00015 36.0 -0.1 27 133-160 18-44 (278)
9 2iqj_A Stromal membrane-associ 43.2 4.2 0.00014 34.1 -0.5 29 132-161 27-55 (134)
10 2owa_A Arfgap-like finger doma 41.8 4.5 0.00015 34.1 -0.5 28 133-161 37-64 (138)
11 2olm_A Nucleoporin-like protei 41.7 4.6 0.00016 34.0 -0.4 28 133-161 26-53 (140)
12 2b0o_E UPLC1; arfgap, structur 40.5 6 0.00021 35.6 0.1 28 133-161 43-70 (301)
13 2crr_A Stromal membrane-associ 40.5 5.5 0.00019 33.6 -0.1 28 133-161 30-57 (141)
14 1j26_A Immature colon carcinom 39.2 32 0.0011 27.9 4.2 32 17-48 54-109 (112)
15 3sub_A ADP-ribosylation factor 37.2 6.2 0.00021 34.4 -0.4 29 132-161 22-50 (163)
16 1znf_A 31ST zinc finger from X 31.2 22 0.00076 18.9 1.5 17 134-150 3-20 (27)
17 1ard_A Yeast transcription fac 30.0 23 0.0008 19.0 1.5 13 134-146 4-16 (29)
18 3o39_A Periplasmic protein rel 29.7 29 0.001 27.9 2.5 17 17-33 89-105 (108)
19 3d00_A Tungsten formylmethanof 29.7 10 0.00034 33.3 -0.3 23 133-161 164-186 (191)
20 3jue_A Arfgap with coiled-coil 29.7 11 0.00039 35.3 0.0 28 133-161 46-73 (368)
21 2kvh_A Zinc finger and BTB dom 28.3 18 0.00063 19.5 0.8 13 134-146 5-17 (27)
22 3lvq_E ARF-GAP with SH3 domain 26.4 14 0.00048 35.4 0.0 28 133-161 24-51 (497)
23 2gvi_A Conserved hypothetical 26.2 9.2 0.00032 33.7 -1.2 29 133-161 173-201 (204)
24 1klr_A Zinc finger Y-chromosom 25.9 27 0.00093 18.7 1.2 13 134-146 4-16 (30)
25 2k4x_A 30S ribosomal protein S 25.8 14 0.00049 26.3 0.0 26 133-162 19-45 (55)
26 3lju_X ARF-GAP with dual PH do 25.4 13 0.00044 35.5 -0.4 28 133-161 35-62 (386)
27 2m0e_A Zinc finger and BTB dom 25.3 29 0.00098 18.4 1.3 13 134-146 4-16 (29)
28 1paa_A Yeast transcription fac 25.2 28 0.00097 18.9 1.2 17 134-150 4-21 (30)
29 1y02_A CARP2, FYVE-ring finger 25.2 11 0.00038 31.0 -0.8 27 135-161 38-65 (120)
30 2lvu_A Zinc finger and BTB dom 31.1 15 0.00051 19.7 0.0 13 134-146 4-16 (26)
31 1rim_A E6APC2 peptide; E6-bind 24.2 33 0.0011 19.8 1.5 13 134-146 4-16 (33)
32 2m0f_A Zinc finger and BTB dom 24.0 24 0.00083 18.8 0.8 13 134-146 4-16 (29)
33 1vd4_A Transcription initiatio 23.8 22 0.00075 24.1 0.7 29 133-161 15-47 (62)
34 2jr7_A DPH3 homolog; DESR1, CS 23.8 22 0.00076 28.0 0.7 26 135-161 26-53 (89)
35 1p7a_A BF3, BKLF, kruppel-like 23.8 33 0.0011 19.9 1.4 14 133-146 12-25 (37)
36 1rik_A E6APC1 peptide; E6-bind 23.2 23 0.00079 19.1 0.6 13 134-146 4-16 (29)
37 2epx_A Zinc finger protein 28 23.1 35 0.0012 20.9 1.5 18 133-150 13-31 (47)
38 3mhs_E SAGA-associated factor 22.9 20 0.0007 28.7 0.4 13 135-147 78-90 (96)
39 2m0d_A Zinc finger and BTB dom 22.9 26 0.0009 18.8 0.8 13 134-146 5-17 (30)
40 3jyw_9 60S ribosomal protein L 22.9 45 0.0015 25.3 2.2 36 133-171 27-64 (72)
41 1x4u_A Zinc finger, FYVE domai 22.6 13 0.00043 28.2 -0.9 10 133-142 15-24 (84)
42 2g2k_A EIF-5, eukaryotic trans 22.1 18 0.0006 31.7 -0.2 27 135-161 99-127 (170)
43 2elr_A Zinc finger protein 406 22.0 39 0.0013 19.3 1.5 14 133-146 10-23 (36)
44 1a92_A Delta antigen; leucine 21.6 2.2E+02 0.0074 20.2 5.4 18 236-253 16-33 (50)
45 2em5_A ZFP-95, zinc finger pro 21.5 35 0.0012 21.0 1.2 18 133-150 13-31 (46)
46 3twe_A Alpha4H; unknown functi 21.4 1.1E+02 0.0039 18.8 3.4 13 250-262 14-26 (27)
47 2y39_A Nickel and cobalt resis 21.3 93 0.0032 25.7 4.0 25 17-41 19-43 (118)
48 2lo3_A SAGA-associated factor 21.2 47 0.0016 23.1 1.8 21 288-308 13-33 (44)
49 1wge_A Hypothetical protein 26 21.2 30 0.001 26.9 1.0 26 135-161 33-60 (83)
50 2el4_A Zinc finger protein 268 20.9 38 0.0013 20.7 1.3 18 133-150 13-31 (46)
51 2ema_A Zinc finger protein 347 20.9 37 0.0013 20.9 1.2 14 133-146 13-26 (46)
52 2elx_A Zinc finger protein 406 20.7 31 0.001 19.6 0.8 14 133-146 8-21 (35)
53 1yop_A KTI11P; zinc finger, me 20.3 25 0.00085 27.3 0.4 26 135-161 26-53 (83)
54 2kvf_A Zinc finger and BTB dom 20.3 32 0.0011 18.4 0.8 17 134-150 5-22 (28)
No 1
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=100.00 E-value=7.1e-48 Score=319.39 Aligned_cols=111 Identities=55% Similarity=1.057 Sum_probs=106.3
Q ss_pred CCCcCCCcccccccccCCchhHHhhcCccccccccCCCcccccccccccccccccCCCCcCCCCccccceeccCCCCCCC
Q psy5133 126 LLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHW 205 (313)
Q Consensus 126 i~~~~~~~~C~eC~~~~~Ds~l~~~F~~~VC~~Cr~~~~k~~LiTkTeak~dYlL~d~DL~~re~~L~~i~k~NPh~~~w 205 (313)
|++++ ++|++||++|+|++|+++|+++||++|++.+++|+|||+|+||++|||+|+||++++++|+||.|+|||+++|
T Consensus 1 ~~~~~--~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~~~~~~liTkt~ak~dYlL~d~dL~~~~~~L~~~~k~NPh~~~~ 78 (111)
T 1d4u_A 1 MEFDY--VICEECGKEFMDSYLMDHFDLPTCDDCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQW 78 (111)
T ss_dssp CCCCC--EECTTTCCEESCSSSTTTTSCCCCTTTCSSSSSCCCEEHHHHTTTTTCCSSSTTTSCCSCCEEESSCSSSCCC
T ss_pred CCCCC--CccccCCChhhHHHHHHhCCeeechhhcccccccccccHHHHHHHHcCCchhhccccccCCeeccCCCCCCCC
Confidence 34566 4599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy5133 206 GDMKLYLSLQVEQRAIEVWGSEEELEQERERRA 238 (313)
Q Consensus 206 ~~MkLYlr~QVe~~A~~~WGS~E~Le~E~erRe 238 (313)
++|+|||++|||++|++||||+|+|++|+++|+
T Consensus 79 ~~MkLYlr~qVe~~A~~vwGS~E~Le~E~e~R~ 111 (111)
T 1d4u_A 79 GDMKLYLKLQIVKRSLEVWGSQEALEEAKEVRQ 111 (111)
T ss_dssp SCCEEECHHHHHHHHHHHTSSHHHHHHHHHHCC
T ss_pred ccceeehHHHHHHHHHHHHCCHHHHHHHHHhhC
Confidence 999999999999999999999999999999984
No 2
>2enk_A HUEL, solute carrier family 30 member 9; cation transporter, cobalt, zinc, cadmium, protein of unknown function DUF993, embryonic LUNG protein; NMR {Homo sapiens}
Probab=99.97 E-value=3.3e-33 Score=227.90 Aligned_cols=85 Identities=32% Similarity=0.600 Sum_probs=82.5
Q ss_pred CcccccccccccccccccCCCCcCCCCccccceeccCCCCCCCCCcchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q psy5133 163 ESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEKAS 242 (313)
Q Consensus 163 ~~k~~LiTkTeak~dYlL~d~DL~~re~~L~~i~k~NPh~~~w~~MkLYlr~QVe~~A~~~WGS~E~Le~E~erRe~~r~ 242 (313)
+++|+|||+|+|+++|||+|+||++ |+||.++|||+++ ++|+|||++|||++||+||||+|+|++|+++|++++.
T Consensus 9 ~~~~~lITkteAk~dYlLkd~dL~~----L~~i~k~NPh~~~-~~MkLYlr~qVe~rAlevWGS~E~Le~E~e~R~~~r~ 83 (101)
T 2enk_A 9 YTQNNFITGVRAINEFCLKSSDLEQ----LRKIRRRSPHEDT-ESFTVYLRSDVEAKSLEVWGSPEALAREKKLRKEAEI 83 (101)
T ss_dssp CCCCSEEEHHHHHHHTCCCHHHHHH----SCCBCTTCSSCSS-CCCCEEEHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHCCChhhhhh----CcccccCCCCCCC-CCceeehHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999995 9999999999999 9999999999999999999999999999999999999
Q ss_pred hhHHHHHHHH
Q psy5133 243 NSKLKQYNKK 252 (313)
Q Consensus 243 ~~K~Kkf~kk 252 (313)
++++|+|..|
T Consensus 84 ~~~~k~f~~k 93 (101)
T 2enk_A 84 EYRERLFRNQ 93 (101)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999654
No 3
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=47.33 E-value=3.7 Score=35.08 Aligned_cols=28 Identities=25% Similarity=0.600 Sum_probs=22.8
Q ss_pred cccccccccCCchhHHhhcCccccccccC
Q psy5133 133 PTCVECKKKFPQSFLYDKFGHSVCDSCRD 161 (313)
Q Consensus 133 ~~C~eC~~~~~Ds~l~~~F~~~VC~~Cr~ 161 (313)
..|.+||....+| ..-+||+-||..|.-
T Consensus 38 ~~CaDCga~~P~W-aS~n~GvfiC~~Csg 65 (144)
T 2p57_A 38 KACFDCGAKNPSW-ASITYGVFLCIDCSG 65 (144)
T ss_dssp GBCTTTCCBSCCE-EEGGGTEEECHHHHH
T ss_pred CcCCCCcCCCCCe-EEeccCEEEhhhchH
Confidence 5699999876554 466899999999976
No 4
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.70 E-value=4.5 Score=34.65 Aligned_cols=28 Identities=25% Similarity=0.593 Sum_probs=22.6
Q ss_pred cccccccccCCchhHHhhcCccccccccC
Q psy5133 133 PTCVECKKKFPQSFLYDKFGHSVCDSCRD 161 (313)
Q Consensus 133 ~~C~eC~~~~~Ds~l~~~F~~~VC~~Cr~ 161 (313)
..|.+||....+| ..-+||+-||..|.-
T Consensus 30 ~~CaDCga~~P~W-aS~n~GvfiC~~Csg 57 (149)
T 2crw_A 30 KVCFDCGAKNPSW-ASITYGVFLCIDCSG 57 (149)
T ss_dssp SBCSSSCCBSCCC-EETTTTEECCHHHHH
T ss_pred CcCCCCcCCCCCc-EEeccCEEEchhcch
Confidence 5699999875543 466899999999976
No 5
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=46.00 E-value=4.4 Score=34.80 Aligned_cols=28 Identities=29% Similarity=0.600 Sum_probs=22.8
Q ss_pred cccccccccCCchhHHhhcCccccccccC
Q psy5133 133 PTCVECKKKFPQSFLYDKFGHSVCDSCRD 161 (313)
Q Consensus 133 ~~C~eC~~~~~Ds~l~~~F~~~VC~~Cr~ 161 (313)
..|.+||....+| ..-+||+-||..|.-
T Consensus 39 ~~CaDCga~~P~W-aS~nlGvfiC~~CSg 66 (147)
T 3dwd_A 39 NVCFECGAFNPQW-VSVTYGIWICLECSG 66 (147)
T ss_dssp TBCTTTCCBSCCE-EETTTTEEECHHHHH
T ss_pred CccCCCCCCCCCe-EEecccEeEhHhhCh
Confidence 5699999976443 467899999999976
No 6
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=45.33 E-value=4.7 Score=37.16 Aligned_cols=28 Identities=29% Similarity=0.682 Sum_probs=23.1
Q ss_pred cccccccccCCchhHHhhcCccccccccC
Q psy5133 133 PTCVECKKKFPQSFLYDKFGHSVCDSCRD 161 (313)
Q Consensus 133 ~~C~eC~~~~~Ds~l~~~F~~~VC~~Cr~ 161 (313)
..|.+||....+ |..-+||+-+|..|.-
T Consensus 38 ~~c~dc~~~~~~-~~~~~~~~~~c~~c~~ 65 (329)
T 3o47_A 38 NVCFECGAFNPQ-WVSVTYGIWICLECSG 65 (329)
T ss_dssp TBCTTTCCBSCC-EEEGGGTEEECHHHHH
T ss_pred CcCCCCCCCCCC-eEEecCCEEEChhhhh
Confidence 569999997663 4567999999999976
No 7
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=45.19 E-value=7.9 Score=31.53 Aligned_cols=25 Identities=24% Similarity=0.634 Sum_probs=18.9
Q ss_pred cccccccccCCchhHHhhcC-ccccccccCC
Q psy5133 133 PTCVECKKKFPQSFLYDKFG-HSVCDSCRDG 162 (313)
Q Consensus 133 ~~C~eC~~~~~Ds~l~~~F~-~~VC~~Cr~~ 162 (313)
++|.+||-.| .+-++ -..|-.|+..
T Consensus 68 ~~C~~CG~~F-----~~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 68 AQCRKCGFVF-----KAEINIPSRCPKCKSE 93 (105)
T ss_dssp CBBTTTCCBC-----CCCSSCCSSCSSSCCC
T ss_pred cChhhCcCee-----cccCCCCCCCcCCCCC
Confidence 6699999998 23333 3889999876
No 8
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=45.09 E-value=4.3 Score=36.05 Aligned_cols=27 Identities=26% Similarity=0.710 Sum_probs=23.1
Q ss_pred cccccccccCCchhHHhhcCcccccccc
Q psy5133 133 PTCVECKKKFPQSFLYDKFGHSVCDSCR 160 (313)
Q Consensus 133 ~~C~eC~~~~~Ds~l~~~F~~~VC~~Cr 160 (313)
..|.+||.... .|+.-+||+-+|-.|.
T Consensus 18 ~~c~dc~~~~p-~w~s~~~g~~~c~~c~ 44 (278)
T 1dcq_A 18 DVCCDCGAPDP-TWLSTNLGILTCIECS 44 (278)
T ss_dssp TBCTTTCCBSC-CEEETTTTEEECHHHH
T ss_pred CcCCCCCCCCC-CeEEecCCeEEcHHHH
Confidence 55999999877 5678899999999993
No 9
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=43.25 E-value=4.2 Score=34.10 Aligned_cols=29 Identities=24% Similarity=0.529 Sum_probs=23.1
Q ss_pred CcccccccccCCchhHHhhcCccccccccC
Q psy5133 132 QPTCVECKKKFPQSFLYDKFGHSVCDSCRD 161 (313)
Q Consensus 132 ~~~C~eC~~~~~Ds~l~~~F~~~VC~~Cr~ 161 (313)
+..|.+||....+| ..-+||+-||..|.-
T Consensus 27 N~~CaDCg~~~P~W-aS~n~GvfiC~~Csg 55 (134)
T 2iqj_A 27 NKFCADCQSKGPRW-ASWNIGVFICIRCAG 55 (134)
T ss_dssp GGBCTTTCCBSCCE-EETTTTEEECHHHHH
T ss_pred CCcCCcCcCCCCCe-EEecCCEEEhHhhhH
Confidence 35699999986443 467899999999976
No 10
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=41.84 E-value=4.5 Score=34.15 Aligned_cols=28 Identities=29% Similarity=0.676 Sum_probs=22.7
Q ss_pred cccccccccCCchhHHhhcCccccccccC
Q psy5133 133 PTCVECKKKFPQSFLYDKFGHSVCDSCRD 161 (313)
Q Consensus 133 ~~C~eC~~~~~Ds~l~~~F~~~VC~~Cr~ 161 (313)
..|.+||....+| ..-+||+-||..|.-
T Consensus 37 ~~CaDCga~~P~W-aS~n~GvfiC~~Csg 64 (138)
T 2owa_A 37 RTCFDCESRNPTW-LSLSFAVFICLNCSS 64 (138)
T ss_dssp GBCTTTCCBSCCE-EETTTTEEECHHHHH
T ss_pred CcCCCCcCCCCCe-EEecCCEEEhHhhhH
Confidence 5699999876443 467999999999976
No 11
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=41.66 E-value=4.6 Score=34.05 Aligned_cols=28 Identities=29% Similarity=0.713 Sum_probs=22.4
Q ss_pred cccccccccCCchhHHhhcCccccccccC
Q psy5133 133 PTCVECKKKFPQSFLYDKFGHSVCDSCRD 161 (313)
Q Consensus 133 ~~C~eC~~~~~Ds~l~~~F~~~VC~~Cr~ 161 (313)
..|.+||....+| ..-+||+-||..|.-
T Consensus 26 ~~CaDCg~~~P~W-aS~n~GvfiC~~Csg 53 (140)
T 2olm_A 26 RKCFDCDQRGPTY-VNMTVGSFVCTSCSG 53 (140)
T ss_dssp GSCTTTCSSCCCE-EETTTTEEECHHHHH
T ss_pred CcCCCCCCCCCCc-eeeccCEEEchhccc
Confidence 5699999875443 466899999999976
No 12
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=40.54 E-value=6 Score=35.58 Aligned_cols=28 Identities=25% Similarity=0.604 Sum_probs=22.3
Q ss_pred cccccccccCCchhHHhhcCccccccccC
Q psy5133 133 PTCVECKKKFPQSFLYDKFGHSVCDSCRD 161 (313)
Q Consensus 133 ~~C~eC~~~~~Ds~l~~~F~~~VC~~Cr~ 161 (313)
..|.+||....+| ..-+||+-+|-.|.-
T Consensus 43 ~~c~dc~~~~p~w-~s~~~g~~~c~~cs~ 70 (301)
T 2b0o_E 43 SQCCDCGAADPTW-LSTNLGVLTCIQCSG 70 (301)
T ss_dssp TBCTTTCCBSCCE-EETTTTEEECHHHHH
T ss_pred CcCCCCCCCCCCe-EEeecCeEEcHHHHH
Confidence 5599999976543 467999999999954
No 13
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.53 E-value=5.5 Score=33.61 Aligned_cols=28 Identities=25% Similarity=0.534 Sum_probs=22.5
Q ss_pred cccccccccCCchhHHhhcCccccccccC
Q psy5133 133 PTCVECKKKFPQSFLYDKFGHSVCDSCRD 161 (313)
Q Consensus 133 ~~C~eC~~~~~Ds~l~~~F~~~VC~~Cr~ 161 (313)
..|.+||....+| ..-+||+-||..|.-
T Consensus 30 ~~CaDCga~~P~W-aS~n~GvfiC~~Csg 57 (141)
T 2crr_A 30 KYCADCEAKGPRW-ASWNIGVFICIRCAG 57 (141)
T ss_dssp SSCSSSCCSSCCS-EETTTTEECCHHHHH
T ss_pred CcCCCCCCCCCCe-EEeccCeEEhhhhhH
Confidence 5599999875443 467899999999976
No 14
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=39.19 E-value=32 Score=27.94 Aligned_cols=32 Identities=16% Similarity=0.131 Sum_probs=27.5
Q ss_pred CCCCHHHHHHH------------------------HHHHHHHHHHHHHhhhhccCC
Q psy5133 17 ISLSAMQKEQI------------------------ERNRQRAIQIQQTRTRDLYDP 48 (313)
Q Consensus 17 ~~lT~eq~~rI------------------------E~NR~kAl~lr~~r~~~~~~p 48 (313)
..|+++++.|+ ++||..|+++..+++.++..|
T Consensus 54 ~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~Nr~~Al~rL~~~l~~a~~~ 109 (112)
T 1j26_A 54 DWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAEASGP 109 (112)
T ss_dssp TTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccCCHHHHHHHHHhhccccccCCeEEEEECCccCHHHHHHHHHHHHHHHHHHhhcC
Confidence 56999999999 999999999999998765443
No 15
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=37.25 E-value=6.2 Score=34.42 Aligned_cols=29 Identities=21% Similarity=0.527 Sum_probs=22.9
Q ss_pred CcccccccccCCchhHHhhcCccccccccC
Q psy5133 132 QPTCVECKKKFPQSFLYDKFGHSVCDSCRD 161 (313)
Q Consensus 132 ~~~C~eC~~~~~Ds~l~~~F~~~VC~~Cr~ 161 (313)
+..|.+||.....| ..-+||+-+|..|.-
T Consensus 22 N~~CaDCga~~P~W-aS~nlGvflCi~CSG 50 (163)
T 3sub_A 22 NNKCFDCGISNPDW-VSVNHGIFLCINCSG 50 (163)
T ss_dssp GGBCTTTCCBSCCE-EETTTTEEECHHHHH
T ss_pred CCccccCCCCCCCe-EEecCCeeEHHhhhH
Confidence 35699999975443 467899999999975
No 16
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=31.15 E-value=22 Score=18.89 Aligned_cols=17 Identities=24% Similarity=0.542 Sum_probs=11.9
Q ss_pred ccccccccCCchh-HHhh
Q psy5133 134 TCVECKKKFPQSF-LYDK 150 (313)
Q Consensus 134 ~C~eC~~~~~Ds~-l~~~ 150 (313)
.|..||+.|.... |..+
T Consensus 3 ~C~~C~k~f~~~~~l~~H 20 (27)
T 1znf_A 3 KCGLCERSFVEKSALSRH 20 (27)
T ss_dssp BCSSSCCBCSSHHHHHHH
T ss_pred cCCCCCCcCCCHHHHHHH
Confidence 4999999997543 4443
No 17
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=30.02 E-value=23 Score=18.98 Aligned_cols=13 Identities=23% Similarity=0.685 Sum_probs=10.5
Q ss_pred ccccccccCCchh
Q psy5133 134 TCVECKKKFPQSF 146 (313)
Q Consensus 134 ~C~eC~~~~~Ds~ 146 (313)
.|..||+.|....
T Consensus 4 ~C~~C~~~f~~~~ 16 (29)
T 1ard_A 4 VCEVCTRAFARQE 16 (29)
T ss_dssp BCTTTCCBCSSHH
T ss_pred ECCCCCcccCCHH
Confidence 4999999997654
No 18
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=29.75 E-value=29 Score=27.90 Aligned_cols=17 Identities=29% Similarity=0.302 Sum_probs=14.2
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy5133 17 ISLSAMQKEQIERNRQR 33 (313)
Q Consensus 17 ~~lT~eq~~rIE~NR~k 33 (313)
.-|||||+++...|.++
T Consensus 89 ~lLTPEQk~q~~~~~~~ 105 (108)
T 3o39_A 89 NILTPEQKKQFNANFEK 105 (108)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 35999999999988764
No 19
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=29.71 E-value=10 Score=33.35 Aligned_cols=23 Identities=26% Similarity=0.862 Sum_probs=20.7
Q ss_pred cccccccccCCchhHHhhcCccccccccC
Q psy5133 133 PTCVECKKKFPQSFLYDKFGHSVCDSCRD 161 (313)
Q Consensus 133 ~~C~eC~~~~~Ds~l~~~F~~~VC~~Cr~ 161 (313)
..|..||..++++ |-.||..|..
T Consensus 164 ~~C~~CGE~~~~~------g~~~C~~C~~ 186 (191)
T 3d00_A 164 VLCPQCREAYPAQ------DGELCLSCQG 186 (191)
T ss_dssp EECTTTCCEEEGG------GCSSCHHHHT
T ss_pred EECCcCCCChhhC------CCcCCccccC
Confidence 4599999999988 8899999976
No 20
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=29.65 E-value=11 Score=35.35 Aligned_cols=28 Identities=21% Similarity=0.668 Sum_probs=22.2
Q ss_pred cccccccccCCchhHHhhcCccccccccC
Q psy5133 133 PTCVECKKKFPQSFLYDKFGHSVCDSCRD 161 (313)
Q Consensus 133 ~~C~eC~~~~~Ds~l~~~F~~~VC~~Cr~ 161 (313)
..|.+||....+| ..-+||+-+|..|.-
T Consensus 46 ~~c~dc~~~~p~w-~s~~~g~~~c~~c~~ 73 (368)
T 3jue_A 46 AQCCDCREPAPEW-ASINLGVTLCIQCSG 73 (368)
T ss_dssp TBCTTTCCBSCCE-EETTTTEEECHHHHH
T ss_pred CcCCCCCCCCCCe-EEecCCeEEcHhHHH
Confidence 5699999974433 467999999999974
No 21
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=28.31 E-value=18 Score=19.49 Aligned_cols=13 Identities=15% Similarity=0.409 Sum_probs=10.5
Q ss_pred ccccccccCCchh
Q psy5133 134 TCVECKKKFPQSF 146 (313)
Q Consensus 134 ~C~eC~~~~~Ds~ 146 (313)
.|..||+.|....
T Consensus 5 ~C~~C~k~f~~~~ 17 (27)
T 2kvh_A 5 SCSLCPQRSRDFS 17 (27)
T ss_dssp ECSSSSCEESSHH
T ss_pred cCCCcChhhCCHH
Confidence 5999999997654
No 22
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=26.39 E-value=14 Score=35.39 Aligned_cols=28 Identities=25% Similarity=0.604 Sum_probs=23.5
Q ss_pred cccccccccCCchhHHhhcCccccccccC
Q psy5133 133 PTCVECKKKFPQSFLYDKFGHSVCDSCRD 161 (313)
Q Consensus 133 ~~C~eC~~~~~Ds~l~~~F~~~VC~~Cr~ 161 (313)
..|.+||....+| ..-++|+-||..|.-
T Consensus 24 ~~c~dc~~~~p~w-~s~~~~~~~c~~c~~ 51 (497)
T 3lvq_E 24 SQCCDCGAADPTW-LSTNLGVLTCIQCSG 51 (497)
T ss_dssp TBCTTTCCBSCCE-EETTTTEEECHHHHH
T ss_pred CcccCCCCCCCCE-EEechhHHhHHhhHH
Confidence 5599999887765 567899999999975
No 23
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=26.21 E-value=9.2 Score=33.68 Aligned_cols=29 Identities=17% Similarity=0.120 Sum_probs=23.9
Q ss_pred cccccccccCCchhHHhhcCccccccccC
Q psy5133 133 PTCVECKKKFPQSFLYDKFGHSVCDSCRD 161 (313)
Q Consensus 133 ~~C~eC~~~~~Ds~l~~~F~~~VC~~Cr~ 161 (313)
..|..||..++++...-.=|-.||..|..
T Consensus 173 ~~C~~CGE~~~~~~~~~~~g~~~C~~C~~ 201 (204)
T 2gvi_A 173 VRCDVCGEYTYEADAKLLNGKPVCKPDYY 201 (204)
T ss_dssp EECTTTCCEEEGGGCEEETTEEECHHHHH
T ss_pred eECCCCCCchhhcceeeeCCcEEChhhhc
Confidence 45999999999998655557899999964
No 24
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=25.90 E-value=27 Score=18.70 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=10.2
Q ss_pred ccccccccCCchh
Q psy5133 134 TCVECKKKFPQSF 146 (313)
Q Consensus 134 ~C~eC~~~~~Ds~ 146 (313)
.|..||+.|....
T Consensus 4 ~C~~C~k~f~~~~ 16 (30)
T 1klr_A 4 QCQYCEFRSADSS 16 (30)
T ss_dssp CCSSSSCCCSCSH
T ss_pred cCCCCCCccCCHH
Confidence 4999999997543
No 25
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=25.84 E-value=14 Score=26.32 Aligned_cols=26 Identities=19% Similarity=0.475 Sum_probs=20.1
Q ss_pred ccccccccc-CCchhHHhhcCccccccccCC
Q psy5133 133 PTCVECKKK-FPQSFLYDKFGHSVCDSCRDG 162 (313)
Q Consensus 133 ~~C~eC~~~-~~Ds~l~~~F~~~VC~~Cr~~ 162 (313)
..|..||.. |+. .+|+..+|.+|--.
T Consensus 19 ~fCPkCG~~~~ma----~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 19 RFCPRCGPGVFLA----EHADRYSCGRCGYT 45 (55)
T ss_dssp CCCTTTTTTCCCE----ECSSEEECTTTCCC
T ss_pred ccCcCCCCceeEe----ccCCEEECCCCCCE
Confidence 459999985 444 77899999999653
No 26
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=25.40 E-value=13 Score=35.52 Aligned_cols=28 Identities=25% Similarity=0.556 Sum_probs=22.3
Q ss_pred cccccccccCCchhHHhhcCccccccccC
Q psy5133 133 PTCVECKKKFPQSFLYDKFGHSVCDSCRD 161 (313)
Q Consensus 133 ~~C~eC~~~~~Ds~l~~~F~~~VC~~Cr~ 161 (313)
..|.+||....++ ..-+||+-+|..|.-
T Consensus 35 ~~C~dC~~~~p~w-~s~~~g~~~C~~Csg 62 (386)
T 3lju_X 35 ARCADCGAPDPDW-ASYTLGVFICLSCSG 62 (386)
T ss_dssp SBCTTTCCBSCCE-EETTTTEEECHHHHH
T ss_pred CcCccCCCCCCCe-EEecccEEEhhhhch
Confidence 5599999974433 466899999999976
No 27
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=25.34 E-value=29 Score=18.44 Aligned_cols=13 Identities=46% Similarity=0.800 Sum_probs=10.1
Q ss_pred ccccccccCCchh
Q psy5133 134 TCVECKKKFPQSF 146 (313)
Q Consensus 134 ~C~eC~~~~~Ds~ 146 (313)
.|..||+.|....
T Consensus 4 ~C~~C~~~f~~~~ 16 (29)
T 2m0e_A 4 KCPHCDKKFNQVG 16 (29)
T ss_dssp CCSSCCCCCCTTT
T ss_pred cCCCCCcccCCHH
Confidence 4999999986543
No 28
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=25.23 E-value=28 Score=18.87 Aligned_cols=17 Identities=24% Similarity=0.679 Sum_probs=11.9
Q ss_pred ccccccccCCch-hHHhh
Q psy5133 134 TCVECKKKFPQS-FLYDK 150 (313)
Q Consensus 134 ~C~eC~~~~~Ds-~l~~~ 150 (313)
.|..||+.|... .|..+
T Consensus 4 ~C~~C~k~f~~~~~l~~H 21 (30)
T 1paa_A 4 ACGLCNRAFTRRDLLIRH 21 (30)
T ss_dssp BCTTTCCBCSSSHHHHHH
T ss_pred CCcccCcccCChHHHHHH
Confidence 499999999654 34443
No 29
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=25.23 E-value=11 Score=31.01 Aligned_cols=27 Identities=30% Similarity=0.661 Sum_probs=11.7
Q ss_pred cccccccCCchhHHhhc-CccccccccC
Q psy5133 135 CVECKKKFPQSFLYDKF-GHSVCDSCRD 161 (313)
Q Consensus 135 C~eC~~~~~Ds~l~~~F-~~~VC~~Cr~ 161 (313)
|+.||..|-+.=....+ .++||+.|..
T Consensus 38 CR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 38 CLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp CTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred CCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 55555554433222211 2566666643
No 30
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=31.10 E-value=15 Score=19.67 Aligned_cols=13 Identities=46% Similarity=0.861 Sum_probs=10.2
Q ss_pred ccccccccCCchh
Q psy5133 134 TCVECKKKFPQSF 146 (313)
Q Consensus 134 ~C~eC~~~~~Ds~ 146 (313)
.|.+||+.|....
T Consensus 4 ~C~~C~k~f~~~~ 16 (26)
T 2lvu_A 4 VCERCGKRFVQSS 16 (26)
Confidence 4999999987643
No 31
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=24.18 E-value=33 Score=19.79 Aligned_cols=13 Identities=46% Similarity=0.884 Sum_probs=10.5
Q ss_pred ccccccccCCchh
Q psy5133 134 TCVECKKKFPQSF 146 (313)
Q Consensus 134 ~C~eC~~~~~Ds~ 146 (313)
.|..||+.|....
T Consensus 4 ~C~~C~k~F~~~~ 16 (33)
T 1rim_A 4 ACPECPKRFMRSD 16 (33)
T ss_dssp CCSSSCCCCSSHH
T ss_pred cCCCCCchhCCHH
Confidence 4999999997654
No 32
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.00 E-value=24 Score=18.83 Aligned_cols=13 Identities=46% Similarity=0.830 Sum_probs=10.3
Q ss_pred ccccccccCCchh
Q psy5133 134 TCVECKKKFPQSF 146 (313)
Q Consensus 134 ~C~eC~~~~~Ds~ 146 (313)
.|..||+.|....
T Consensus 4 ~C~~C~k~f~~~~ 16 (29)
T 2m0f_A 4 KCRECGKQFTTSG 16 (29)
T ss_dssp ECTTTSCEESCHH
T ss_pred cCCCCCCccCChh
Confidence 5999999987554
No 33
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=23.82 E-value=22 Score=24.07 Aligned_cols=29 Identities=24% Similarity=0.500 Sum_probs=17.1
Q ss_pred cccccccccCCchhHHhhc----CccccccccC
Q psy5133 133 PTCVECKKKFPQSFLYDKF----GHSVCDSCRD 161 (313)
Q Consensus 133 ~~C~eC~~~~~Ds~l~~~F----~~~VC~~Cr~ 161 (313)
..|..||+.|....-+..+ .-..|..|-.
T Consensus 15 ~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k 47 (62)
T 1vd4_A 15 FKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHT 47 (62)
T ss_dssp EECSSSCCEEEHHHHHHHEETTTTEEBCSSSCC
T ss_pred ccCCCCCchhccHHHhHhhcCCCCCEECCCCCC
Confidence 4599999998654433221 2245666644
No 34
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=23.78 E-value=22 Score=28.00 Aligned_cols=26 Identities=27% Similarity=0.565 Sum_probs=20.4
Q ss_pred cccccccCC--chhHHhhcCccccccccC
Q psy5133 135 CVECKKKFP--QSFLYDKFGHSVCDSCRD 161 (313)
Q Consensus 135 C~eC~~~~~--Ds~l~~~F~~~VC~~Cr~ 161 (313)
|+ ||..|. ...|.+...+..|.+|.-
T Consensus 26 Cr-CGd~F~IteedLe~ge~iv~C~sCSL 53 (89)
T 2jr7_A 26 CP-CGDNFSITKEDLENGEDVATCPSCSL 53 (89)
T ss_dssp CT-TSSEEEEEHHHHHHTCCEEECTTTCC
T ss_pred CC-CCCEEEECHHHHhCCCEEEECCCCcc
Confidence 98 999873 445677778999999965
No 35
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=23.77 E-value=33 Score=19.88 Aligned_cols=14 Identities=29% Similarity=0.714 Sum_probs=11.1
Q ss_pred cccccccccCCchh
Q psy5133 133 PTCVECKKKFPQSF 146 (313)
Q Consensus 133 ~~C~eC~~~~~Ds~ 146 (313)
..|..|++.|....
T Consensus 12 ~~C~~C~k~f~~~~ 25 (37)
T 1p7a_A 12 FQCPDCDRSFSRSD 25 (37)
T ss_dssp BCCTTTCCCBSSHH
T ss_pred ccCCCCCcccCcHH
Confidence 35999999997654
No 36
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=23.19 E-value=23 Score=19.09 Aligned_cols=13 Identities=46% Similarity=0.884 Sum_probs=10.2
Q ss_pred ccccccccCCchh
Q psy5133 134 TCVECKKKFPQSF 146 (313)
Q Consensus 134 ~C~eC~~~~~Ds~ 146 (313)
.|..||+.|....
T Consensus 4 ~C~~C~k~f~~~~ 16 (29)
T 1rik_A 4 ACPECPKRFMRSD 16 (29)
T ss_dssp ECSSSSCEESCSH
T ss_pred cCCCCCchhCCHH
Confidence 4999999986544
No 37
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.05 E-value=35 Score=20.92 Aligned_cols=18 Identities=39% Similarity=0.696 Sum_probs=12.6
Q ss_pred cccccccccCCchh-HHhh
Q psy5133 133 PTCVECKKKFPQSF-LYDK 150 (313)
Q Consensus 133 ~~C~eC~~~~~Ds~-l~~~ 150 (313)
..|..||+.|.... |..+
T Consensus 13 ~~C~~C~k~F~~~~~L~~H 31 (47)
T 2epx_A 13 YECIECGKAFIQNTSLIRH 31 (47)
T ss_dssp BCCSSSCCCBSSHHHHHHH
T ss_pred EECCccCchhCChHHHHHH
Confidence 35999999997544 4444
No 38
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=22.92 E-value=20 Score=28.72 Aligned_cols=13 Identities=23% Similarity=0.680 Sum_probs=7.0
Q ss_pred cccccccCCchhH
Q psy5133 135 CVECKKKFPQSFL 147 (313)
Q Consensus 135 C~eC~~~~~Ds~l 147 (313)
|..||++..-+-+
T Consensus 78 Cn~CGkPI~l~AI 90 (96)
T 3mhs_E 78 CEKCGKPLALTAI 90 (96)
T ss_dssp ETTTCCEECGGGT
T ss_pred hhccCCceeHHHH
Confidence 6666666544433
No 39
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.87 E-value=26 Score=18.77 Aligned_cols=13 Identities=23% Similarity=0.657 Sum_probs=10.4
Q ss_pred ccccccccCCchh
Q psy5133 134 TCVECKKKFPQSF 146 (313)
Q Consensus 134 ~C~eC~~~~~Ds~ 146 (313)
.|..||+.|....
T Consensus 5 ~C~~C~~~f~~~~ 17 (30)
T 2m0d_A 5 QCDYCGRSFSDPT 17 (30)
T ss_dssp ECTTTCCEESCHH
T ss_pred cCCCCCcccCCHH
Confidence 5999999997544
No 40
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=22.86 E-value=45 Score=25.32 Aligned_cols=36 Identities=22% Similarity=0.381 Sum_probs=27.6
Q ss_pred cccccccccCCchhHHhhcCccccccccCC--Ccccccccc
Q psy5133 133 PTCVECKKKFPQSFLYDKFGHSVCDSCRDG--ESKHCLVTR 171 (313)
Q Consensus 133 ~~C~eC~~~~~Ds~l~~~F~~~VC~~Cr~~--~~k~~LiTk 171 (313)
..|..||+.-+-. ...||-.|.+|... -+.|.+-|.
T Consensus 27 y~C~fCgk~~vkR---~a~GIW~C~~C~~~~AGGAy~~~T~ 64 (72)
T 3jyw_9 27 YDCSFCGKKTVKR---GAAGIWTCSCCKKTVAGGAYTVSTA 64 (72)
T ss_dssp BCCSSCCSSCBSB---CSSSCBCCSSSCCCCCCSSSSSCCH
T ss_pred ccCCCCCCceeEe---cCCCeEECCCCCCEEeCCccccCCc
Confidence 4599999875443 67899999999887 677776654
No 41
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.62 E-value=13 Score=28.18 Aligned_cols=10 Identities=30% Similarity=0.929 Sum_probs=6.4
Q ss_pred cccccccccC
Q psy5133 133 PTCVECKKKF 142 (313)
Q Consensus 133 ~~C~eC~~~~ 142 (313)
..|..|+..|
T Consensus 15 ~~C~~C~~~F 24 (84)
T 1x4u_A 15 GNCTGCSATF 24 (84)
T ss_dssp SSCSSSCCCC
T ss_pred CcCcCcCCcc
Confidence 4477777666
No 42
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=22.07 E-value=18 Score=31.67 Aligned_cols=27 Identities=19% Similarity=0.438 Sum_probs=18.3
Q ss_pred cccccccCCchhH--HhhcCccccccccC
Q psy5133 135 CVECKKKFPQSFL--YDKFGHSVCDSCRD 161 (313)
Q Consensus 135 C~eC~~~~~Ds~l--~~~F~~~VC~~Cr~ 161 (313)
|.+|+++..+=.. .+-.=...|..|-.
T Consensus 99 C~~C~sPdT~L~k~~~~r~~~l~C~ACGa 127 (170)
T 2g2k_A 99 CPECENPETDLHVNPKKQTIGNSCKACGY 127 (170)
T ss_dssp CTTTSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCCCCccEEEEecCCCEEEEEccccCC
Confidence 9999999755444 23333578999944
No 43
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.02 E-value=39 Score=19.29 Aligned_cols=14 Identities=36% Similarity=0.536 Sum_probs=10.9
Q ss_pred cccccccccCCchh
Q psy5133 133 PTCVECKKKFPQSF 146 (313)
Q Consensus 133 ~~C~eC~~~~~Ds~ 146 (313)
..|..|++.|....
T Consensus 10 ~~C~~C~k~f~~~~ 23 (36)
T 2elr_A 10 HLCDMCGKKFKSKG 23 (36)
T ss_dssp CBCTTTCCBCSSHH
T ss_pred eecCcCCCCcCchH
Confidence 45999999997544
No 44
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=21.62 E-value=2.2e+02 Score=20.21 Aligned_cols=18 Identities=28% Similarity=0.178 Sum_probs=7.9
Q ss_pred HHHHHHHhhHHHHHHHHH
Q psy5133 236 RRAEKASNSKLKQYNKKI 253 (313)
Q Consensus 236 rRe~~r~~~K~Kkf~kkl 253 (313)
.++-.+..+|.||=.|+|
T Consensus 16 ~eeler~lrk~kk~iKkl 33 (50)
T 1a92_A 16 LEELERDLRKLKKKIKKL 33 (50)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 333444445554444444
No 45
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.47 E-value=35 Score=21.04 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=12.5
Q ss_pred cccccccccCCchh-HHhh
Q psy5133 133 PTCVECKKKFPQSF-LYDK 150 (313)
Q Consensus 133 ~~C~eC~~~~~Ds~-l~~~ 150 (313)
..|..||+.|.... |..+
T Consensus 13 ~~C~~C~k~f~~~~~L~~H 31 (46)
T 2em5_A 13 HQCHECGRGFTLKSHLNQH 31 (46)
T ss_dssp EECSSSCCEESSHHHHHHH
T ss_pred eECCcCCCccCCHHHHHHH
Confidence 45999999996544 4444
No 46
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=21.36 E-value=1.1e+02 Score=18.76 Aligned_cols=13 Identities=31% Similarity=0.649 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHh
Q psy5133 250 NKKIKALRMAVRS 262 (313)
Q Consensus 250 ~kklkeLRk~tR~ 262 (313)
+.+|+.||++.|+
T Consensus 14 qerlrklrkklrs 26 (27)
T 3twe_A 14 QERLRKLRKKLRS 26 (27)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 4556677777765
No 47
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=21.28 E-value=93 Score=25.66 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHh
Q psy5133 17 ISLSAMQKEQIERNRQRAIQIQQTR 41 (313)
Q Consensus 17 ~~lT~eq~~rIE~NR~kAl~lr~~r 41 (313)
..||++|+.+||.-+......|.+.
T Consensus 19 L~Lt~~Q~~~leaie~~fa~~r~~l 43 (118)
T 2y39_A 19 VPLDANEREILELKEDAFAQRRREI 43 (118)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999888777766544
No 48
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=21.22 E-value=47 Score=23.07 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=17.0
Q ss_pred CCceeeecCCCCCeeeeeehh
Q psy5133 288 DDTYTRKCSTCDFEETFEKIF 308 (313)
Q Consensus 288 ~~~y~k~C~~CG~ev~yEkm~ 308 (313)
..+-.+.|..||..|.++-++
T Consensus 13 ~~~~YRvC~~CgkPi~lsAIv 33 (44)
T 2lo3_A 13 KPIQYRVCEKCGKPLALTAIV 33 (44)
T ss_dssp CCCCEEECTTTCCEEETTTHH
T ss_pred ccccchhhcccCCcchHHHHH
Confidence 456678999999999988654
No 49
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=21.22 E-value=30 Score=26.87 Aligned_cols=26 Identities=27% Similarity=0.563 Sum_probs=20.6
Q ss_pred cccccccCC--chhHHhhcCccccccccC
Q psy5133 135 CVECKKKFP--QSFLYDKFGHSVCDSCRD 161 (313)
Q Consensus 135 C~eC~~~~~--Ds~l~~~F~~~VC~~Cr~ 161 (313)
|+ ||..|. ...|.+...+..|.+|.-
T Consensus 33 Cr-CGd~F~it~edL~~ge~iv~C~sCSL 60 (83)
T 1wge_A 33 CP-CGDNFAITKEDLENGEDVATCPSCSL 60 (83)
T ss_dssp CS-SSSCEEEEHHHHHTTCCEEECTTTCC
T ss_pred CC-CCCEEEECHHHHhCCCEEEECCCCce
Confidence 98 999873 455777778999999965
No 50
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=20.94 E-value=38 Score=20.72 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=12.6
Q ss_pred cccccccccCCchh-HHhh
Q psy5133 133 PTCVECKKKFPQSF-LYDK 150 (313)
Q Consensus 133 ~~C~eC~~~~~Ds~-l~~~ 150 (313)
..|..||+.|.... |..+
T Consensus 13 ~~C~~C~k~f~~~~~L~~H 31 (46)
T 2el4_A 13 YGCSQCAKTFSLKSQLIVH 31 (46)
T ss_dssp EECSSSSCEESSHHHHHHH
T ss_pred eECCCCCchhCCHHHHHHH
Confidence 45999999997544 4444
No 51
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=20.91 E-value=37 Score=20.85 Aligned_cols=14 Identities=36% Similarity=0.686 Sum_probs=10.9
Q ss_pred cccccccccCCchh
Q psy5133 133 PTCVECKKKFPQSF 146 (313)
Q Consensus 133 ~~C~eC~~~~~Ds~ 146 (313)
..|..||+.|....
T Consensus 13 ~~C~~C~k~f~~~~ 26 (46)
T 2ema_A 13 YKCNECGKVFSRNS 26 (46)
T ss_dssp EECSSSCCEESSHH
T ss_pred cCCCCCcchhCCHH
Confidence 45999999997544
No 52
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.75 E-value=31 Score=19.57 Aligned_cols=14 Identities=43% Similarity=0.717 Sum_probs=11.0
Q ss_pred cccccccccCCchh
Q psy5133 133 PTCVECKKKFPQSF 146 (313)
Q Consensus 133 ~~C~eC~~~~~Ds~ 146 (313)
..|..|++.|....
T Consensus 8 ~~C~~C~k~f~~~~ 21 (35)
T 2elx_A 8 YVCALCLKKFVSSI 21 (35)
T ss_dssp EECSSSCCEESSHH
T ss_pred eECCCCcchhCCHH
Confidence 35999999997654
No 53
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=20.29 E-value=25 Score=27.29 Aligned_cols=26 Identities=27% Similarity=0.664 Sum_probs=20.2
Q ss_pred cccccccCC--chhHHhhcCccccccccC
Q psy5133 135 CVECKKKFP--QSFLYDKFGHSVCDSCRD 161 (313)
Q Consensus 135 C~eC~~~~~--Ds~l~~~F~~~VC~~Cr~ 161 (313)
|+ ||..|. ...|.+...+..|.+|.-
T Consensus 26 Cr-CGd~F~it~edL~~ge~iv~C~sCSL 53 (83)
T 1yop_A 26 CP-CGDRFQIYLDDMFEGEKVAVCPSCSL 53 (83)
T ss_dssp ET-TTEEEEEEHHHHHTTCCEEECSSSCC
T ss_pred CC-CCCeEEECHHHHhCCCEEEECCCCcc
Confidence 98 998763 444677778999999965
No 54
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.28 E-value=32 Score=18.42 Aligned_cols=17 Identities=24% Similarity=0.597 Sum_probs=11.7
Q ss_pred ccccccccCCch-hHHhh
Q psy5133 134 TCVECKKKFPQS-FLYDK 150 (313)
Q Consensus 134 ~C~eC~~~~~Ds-~l~~~ 150 (313)
.|..||+.|... .|..+
T Consensus 5 ~C~~C~k~f~~~~~l~~H 22 (28)
T 2kvf_A 5 SCSVCGKRFSLKHQMETH 22 (28)
T ss_dssp ECSSSCCEESCHHHHHHH
T ss_pred cCCCCCcccCCHHHHHHH
Confidence 599999998754 34433
Done!