Your job contains 1 sequence.
>psy5133
MQSPATPRKSAKGSKTISLSAMQKEQIERNRQRAIQIQQTRTRDLYDPYPNPVKAGVRQT
ASAPSSCPQSPNLRSTTRLGGARSPGTIRSIINAVGSKLFTDTGGGFLLDYDDKYEEKYI
KQPAPLLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLL
KDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSEEELEQERERRAEK
ASNSKLKQYNKKIKALRMAVRSSLFNKISTSPSSHSHQFGMEVHNEEDDTYTRKCSTCDF
EETFEKIFRLHDD
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy5133
(313 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0004832 - symbol:Xpac "Xeroderma pigmentosum group... 540 4.4e-52 1
UNIPROTKB|P27089 - symbol:XPA "DNA repair protein complem... 527 1.1e-50 1
UNIPROTKB|E2QWU4 - symbol:XPA "Uncharacterized protein" s... 513 3.2e-49 1
UNIPROTKB|Q2TBG4 - symbol:XPA "Uncharacterized protein" s... 512 4.1e-49 1
UNIPROTKB|P23025 - symbol:XPA "DNA repair protein complem... 502 4.7e-48 1
UNIPROTKB|F1SSH0 - symbol:XPA "Uncharacterized protein" s... 498 1.2e-47 1
MGI|MGI:99135 - symbol:Xpa "xeroderma pigmentosum, comple... 498 1.2e-47 1
ZFIN|ZDB-GENE-040426-1205 - symbol:xpa "xeroderma pigment... 496 2.0e-47 1
WB|WBGene00006963 - symbol:xpa-1 species:6239 "Caenorhabd... 407 5.5e-38 1
UNIPROTKB|F2Z2T2 - symbol:XPA "DNA repair protein-complem... 404 1.1e-37 1
RGD|1308769 - symbol:Xpa "xeroderma pigmentosum, compleme... 391 2.7e-36 1
UNIPROTKB|F1NKG8 - symbol:F1NKG8 "Uncharacterized protein... 256 5.5e-22 1
POMBASE|SPBC649.03 - symbol:rhp14 "XP-A family homolog Rh... 236 7.2e-20 1
SGD|S000004814 - symbol:RAD14 "Protein that recognizes an... 206 3.0e-16 1
CGD|CAL0003083 - symbol:RAD14 species:5476 "Candida albic... 167 1.5e-11 2
GENEDB_PFALCIPARUM|MAL7P1.32 - symbol:MAL7P1.32 "hypothet... 134 2.1e-06 2
UNIPROTKB|Q8IBY6 - symbol:MAL7P1.32 "Nucleotide excision ... 134 2.1e-06 2
>FB|FBgn0004832 [details] [associations]
symbol:Xpac "Xeroderma pigmentosum group A-like" species:7227
"Drosophila melanogaster" [GO:0006289 "nucleotide-excision repair"
evidence=IGI;ISS;IDA] [GO:0005634 "nucleus" evidence=NAS;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003684 "damaged
DNA binding" evidence=IEA] InterPro:IPR000465 InterPro:IPR009061
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0003684
EMBL:AE014298 GO:GO:0006289 EMBL:AL033125 SUPFAM:SSF46955
eggNOG:COG5145 KO:K10847 InterPro:IPR022656 PANTHER:PTHR10142
Pfam:PF05181 TIGRFAMs:TIGR00598 PROSITE:PS00752 PROSITE:PS00753
InterPro:IPR022652 Pfam:PF01286 GeneTree:ENSGT00390000002721
InterPro:IPR022658 EMBL:D31893 EMBL:D31892 PIR:JQ1325
RefSeq:NP_476866.1 UniGene:Dm.3118 ProteinModelPortal:P28518
SMR:P28518 DIP:DIP-17686N IntAct:P28518 MINT:MINT-341278
STRING:P28518 EnsemblMetazoa:FBtr0070670 GeneID:31357
KEGG:dme:Dmel_CG6358 CTD:31357 FlyBase:FBgn0004832
InParanoid:P28518 OMA:HEFGPDT OrthoDB:EOG4C2FSH PhylomeDB:P28518
GenomeRNAi:31357 NextBio:773225 Bgee:P28518 GermOnline:CG6358
Uniprot:P28518
Length = 296
Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
Identities = 110/248 (44%), Positives = 150/248 (60%)
Query: 72 NLRSTTRLGGARSPGTIRSIINAVGSKLFTDTGGGFLLDYDDKYE-------EKYIKQPA 124
N T A S G+ S+I G+K + D+GGGFLL+ K ++
Sbjct: 54 NKEGGTHPEAALSQGS--SVIKVQGTK-YIDSGGGFLLEQPVMPTGVGPAGLNKSGEEAP 110
Query: 125 PLLLES-----EQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYL 179
P+L ++ + C+EC F S+L++ FGHSVCD CRD + ++ L+TRT+AK EYL
Sbjct: 111 PILDDAIAIPVQYEECLECGDMFADSYLFNNFGHSVCDKCRDKDERYALITRTEAKAEYL 170
Query: 180 LKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSXXXXXXXXXXXXX 239
LKDCD DKREP LR++ KNPHN WG+MKLYL LQ+ QRA+EVWGS
Sbjct: 171 LKDCDFDKREPKLRYISRKNPHNVRWGEMKLYLHLQIHQRALEVWGSEEELVRQHEARED 230
Query: 240 KASNSKLKQYNKKIKALRMAVRSSLFNKISTSPSSHSHQFGMEVHNEEDDTYTRKCSTCD 299
K K ++YNKK+K LRM VRSS++ K + H H+FG + ++EE+DTYT C TC
Sbjct: 231 KREEGKARKYNKKMKQLRMEVRSSIYTK--KTHEVHEHEFGPDTYDEEEDTYTHTCITCP 288
Query: 300 FEETFEKI 307
+ ET+EK+
Sbjct: 289 YSETYEKM 296
>UNIPROTKB|P27089 [details] [associations]
symbol:XPA "DNA repair protein complementing XP-A cells
homolog" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] InterPro:IPR000465 InterPro:IPR009061 GO:GO:0005654
GO:GO:0000166 GO:GO:0046872 GO:GO:0003684 GO:GO:0006281
GO:GO:0006289 Reactome:REACT_115612 SUPFAM:SSF46955 eggNOG:COG5145
KO:K10847 InterPro:IPR022656 PANTHER:PTHR10142 Pfam:PF05181
TIGRFAMs:TIGR00598 PROSITE:PS00752 PROSITE:PS00753
InterPro:IPR022652 Pfam:PF01286 InterPro:IPR022658 EMBL:D31896
IPI:IPI00591658 PIR:JQ1323 RefSeq:NP_990184.1 UniGene:Gga.3310
ProteinModelPortal:P27089 SMR:P27089 STRING:P27089 PRIDE:P27089
GeneID:395659 KEGG:gga:395659 CTD:7507 HOVERGEN:HBG009053
NextBio:20815731 Uniprot:P27089
Length = 267
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 114/267 (42%), Positives = 153/267 (57%)
Query: 48 PYPNPVKAGVRQTASAPSSCPQSPNLRSTTRLGGAR-SPGTIRSIINAVGSKLFTDTGGG 106
P P+ G R + SA + N R L AR + G DTGGG
Sbjct: 6 PGPDEGAEGERPSISATALARMERNRRRALALRQARLAARPYPQAAAGAGPPQGRDTGGG 65
Query: 107 FLLDYDDKYEE------KYIKQPAPLLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSCR 160
F L+ +++ EE + + PAP+L + + C +C K+F S+L F + CD+CR
Sbjct: 66 FFLEEEEEEEEQRRAAERIVHPPAPVL-QFDYLICGDCGKEFMDSYLMQHFDWATCDNCR 124
Query: 161 DGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRA 220
D E KH L+TRT+AK EYLLKDCDLDKREPVLRF+ KNPHN WGDMKLYL LQV +RA
Sbjct: 125 DAEDKHKLITRTEAKEEYLLKDCDLDKREPVLRFIVKKNPHNPRWGDMKLYLKLQVIKRA 184
Query: 221 IEVWGSXXXXXXXXXXXXXKASNSKLKQYNKKIKALRMAVRSSLFNKISTSPSSHSHQFG 280
+EVWG+ K K+++KK+K LR AVRSSL+ K + S H H++G
Sbjct: 185 LEVWGNEESLQEAKEQRRDSREKMKQKRFDKKVKELRRAVRSSLWKKTA---SIHEHEYG 241
Query: 281 MEVHNEEDDTYTRKCSTCDFEETFEKI 307
E N +++TY + C+ C E T+EK+
Sbjct: 242 PE-ENVDEETYKKTCTVCGHELTYEKM 267
>UNIPROTKB|E2QWU4 [details] [associations]
symbol:XPA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0009636 "response to toxic substance"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IEA] [GO:0006979 "response to oxidative
stress" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000465 InterPro:IPR009061
GO:GO:0005634 GO:GO:0009411 GO:GO:0008630 GO:GO:0006979
GO:GO:0000166 GO:GO:0003684 GO:GO:0009636 GO:GO:0006289
SUPFAM:SSF46955 KO:K10847 InterPro:IPR022656 PANTHER:PTHR10142
Pfam:PF05181 TIGRFAMs:TIGR00598 PROSITE:PS00752 PROSITE:PS00753
InterPro:IPR022652 Pfam:PF01286 GeneTree:ENSGT00390000002721
InterPro:IPR022658 CTD:7507 OMA:GFFLEEE EMBL:AAEX03007976
RefSeq:XP_538745.2 ProteinModelPortal:E2QWU4
Ensembl:ENSCAFT00000003869 GeneID:481623 KEGG:cfa:481623
NextBio:20856379 Uniprot:E2QWU4
Length = 273
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 101/229 (44%), Positives = 142/229 (62%)
Query: 82 ARSPGTIRSIINAVGSKLFTDTGGGFLLDYDDKYEEKY---IKQPAPLLLESEQPTCVEC 138
A +PG + N + DTGGGF+L+ +++ E K I QP P++ E + C EC
Sbjct: 53 AAAPG---GMANVKAAPKIIDTGGGFILEEEEEEEHKIGKVIHQPGPVM-EFDYAICEEC 108
Query: 139 KKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAK 198
K+F S+L F + CD+CRD + KH L+T+T+AK EYLLKDCDL+KREP L+F+ K
Sbjct: 109 GKEFMDSYLMSHFDLATCDNCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKK 168
Query: 199 NPHNKHWGDMKLYLSLQVEQRAIEVWGSXXXXXXXXXXXXXKASNSKLKQYNKKIKALRM 258
NPH+ WGDMKLYL LQ+ +R++EVWGS K K+++KK+K LR
Sbjct: 169 NPHHSQWGDMKLYLKLQIVKRSLEVWGSQEALEEAKEARQENREKMKQKKFDKKVKELRR 228
Query: 259 AVRSSLFNKISTSPSSHSHQFGMEVHNEEDDTYTRKCSTCDFEETFEKI 307
AVRSSL+ + + + H H++G E N EDD Y + C+ C E T+EK+
Sbjct: 229 AVRSSLWKRETVA---HQHEYGPE-ENLEDDMYRKTCTVCGHELTYEKM 273
>UNIPROTKB|Q2TBG4 [details] [associations]
symbol:XPA "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0009636 "response to toxic substance"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IEA] [GO:0006979 "response to oxidative
stress" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000465 InterPro:IPR009061
GO:GO:0005634 GO:GO:0009411 GO:GO:0008630 GO:GO:0006979
GO:GO:0000166 GO:GO:0003684 GO:GO:0009636 GO:GO:0006289
SUPFAM:SSF46955 eggNOG:COG5145 KO:K10847 InterPro:IPR022656
PANTHER:PTHR10142 Pfam:PF05181 TIGRFAMs:TIGR00598 PROSITE:PS00752
PROSITE:PS00753 InterPro:IPR022652 Pfam:PF01286
GeneTree:ENSGT00390000002721 InterPro:IPR022658 CTD:7507
HOVERGEN:HBG009053 HOGENOM:HOG000045820 OMA:GFFLEEE
OrthoDB:EOG4G7C06 EMBL:DAAA02023246 EMBL:BC110270 IPI:IPI00718080
RefSeq:NP_001033770.1 UniGene:Bt.87681 SMR:Q2TBG4 STRING:Q2TBG4
Ensembl:ENSBTAT00000012834 GeneID:537958 KEGG:bta:537958
InParanoid:Q2TBG4 NextBio:20877253 Uniprot:Q2TBG4
Length = 273
Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
Identities = 108/265 (40%), Positives = 154/265 (58%)
Query: 50 PNPVKAGVRQTASAPSSCPQSPNLRSTTRLGGARSPGTIRS----IINAVGSKLFTDTGG 105
P + A VR AS ++ LR RL P T + + N + DTGG
Sbjct: 17 PTELSASVR--ASIERKRQRALMLRQA-RLAARPYPATAAATTGGMANVKAAPKIIDTGG 73
Query: 106 GFLLDYDDKYEE---KYIKQPAPLLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDG 162
GF+L+ +++ E K + QP P++ E + C EC K+F S+L + F + CD+CRD
Sbjct: 74 GFILEEEEEEEHTVGKVVHQPGPVM-EFDYVICEECGKEFMDSYLMNHFDLATCDNCRDA 132
Query: 163 ESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIE 222
+ KH L+T+T+AK EYLLKDCDL+KREP L+F+ KNPH+ WGDMKLYL LQ+ +R++E
Sbjct: 133 DDKHKLITKTEAKQEYLLKDCDLEKREPALKFIVKKNPHHSQWGDMKLYLRLQIVKRSLE 192
Query: 223 VWGSXXXXXXXXXXXXXKASNSKLKQYNKKIKALRMAVRSSLFNKISTSPSSHSHQFGME 282
VWGS K K+++KK+K LR AVRSS++ K ++H H++G E
Sbjct: 193 VWGSQEALEEAKEVRQKNREKMKQKKFDKKVKELRRAVRSSVWKK---ETAAHQHEYGAE 249
Query: 283 VHNEEDDTYTRKCSTCDFEETFEKI 307
EDD Y + C+ C E T+EK+
Sbjct: 250 -EKLEDDMYRKTCTVCGHELTYEKM 273
>UNIPROTKB|P23025 [details] [associations]
symbol:XPA "DNA repair protein complementing XP-A cells"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006979 "response
to oxidative stress" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0009411 "response to UV" evidence=IEA] [GO:0009636 "response to
toxic substance" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0019904 "protein domain specific binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=TAS] [GO:0000718
"nucleotide-excision repair, DNA damage removal" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] Reactome:REACT_216 InterPro:IPR000465
InterPro:IPR009061 GO:GO:0009411 GO:GO:0008630 GO:GO:0005654
GO:GO:0006979 GO:GO:0000166 GO:GO:0046872 GO:GO:0003684
GO:GO:0009636 EMBL:CH471105 GO:GO:0000718 SUPFAM:SSF46955 PDB:2JNW
PDBsum:2JNW EMBL:AL445531 eggNOG:COG5145 KO:K10847
InterPro:IPR022656 PANTHER:PTHR10142 Pfam:PF05181
TIGRFAMs:TIGR00598 PROSITE:PS00752 PROSITE:PS00753
InterPro:IPR022652 Pfam:PF01286 InterPro:IPR022658 CTD:7507
HOVERGEN:HBG009053 EMBL:D14533 EMBL:BT019518 EMBL:AF503166
EMBL:BC014965 EMBL:U16815 EMBL:U10347 EMBL:U10343 EMBL:U10344
EMBL:U10345 EMBL:U10346 IPI:IPI00009694 PIR:I38886 PIR:JG0190
RefSeq:NP_000371.1 UniGene:Hs.654364 PDB:1D4U PDB:1XPA PDBsum:1D4U
PDBsum:1XPA DisProt:DP00243 ProteinModelPortal:P23025 SMR:P23025
DIP:DIP-24191N IntAct:P23025 STRING:P23025 PhosphoSite:P23025
DMDM:139816 PRIDE:P23025 DNASU:7507 Ensembl:ENST00000375128
GeneID:7507 KEGG:hsa:7507 UCSC:uc004axr.4 GeneCards:GC09M100437
HGNC:HGNC:12814 HPA:CAB000155 MIM:278700 MIM:611153
neXtProt:NX_P23025 Orphanet:276249 PharmGKB:PA368
HOGENOM:HOG000045820 InParanoid:P23025 OMA:GFFLEEE
OrthoDB:EOG4G7C06 PhylomeDB:P23025 EvolutionaryTrace:P23025
GenomeRNAi:7507 NextBio:29387 ArrayExpress:P23025 Bgee:P23025
CleanEx:HS_XPA Genevestigator:P23025 GermOnline:ENSG00000136936
Uniprot:P23025
Length = 273
Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 103/261 (39%), Positives = 150/261 (57%)
Query: 50 PNPVKAGVRQTASAPSSCPQSPNLRSTTRLGGARSPGTIRSIINAVGSKLFTDTGGGFLL 109
P V+A + + Q+ R R A + + N + DTGGGF+L
Sbjct: 21 PASVRASIERKRQRALMLRQA---RLAARPYSATAAAATGGMANVKAAPKIIDTGGGFIL 77
Query: 110 DYDDKYEEKY---IKQPAPLLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKH 166
+ +++ E+K + QP P++ E + C EC K+F S+L + F CD+CRD + KH
Sbjct: 78 EEEEEEEQKIGKVVHQPGPVM-EFDYVICEECGKEFMDSYLMNHFDLPTCDNCRDADDKH 136
Query: 167 CLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGS 226
L+T+T+AK EYLLKDCDL+KREP L+F+ KNPH+ WGDMKLYL LQ+ +R++EVWGS
Sbjct: 137 KLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKLYLKLQIVKRSLEVWGS 196
Query: 227 XXXXXXXXXXXXXKASNSKLKQYNKKIKALRMAVRSSLFNKISTSPSSHSHQFGMEVHNE 286
K K+++KK+K LR AVRSS++ + + H H++G E N
Sbjct: 197 QEALEEAKEVRQENREKMKQKKFDKKVKELRRAVRSSVWKRETIV---HQHEYGPE-ENL 252
Query: 287 EDDTYTRKCSTCDFEETFEKI 307
EDD Y + C+ C E T+EK+
Sbjct: 253 EDDMYRKTCTMCGHELTYEKM 273
>UNIPROTKB|F1SSH0 [details] [associations]
symbol:XPA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0009636 "response to toxic substance"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IEA] [GO:0006979 "response to oxidative
stress" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000465 InterPro:IPR009061
GO:GO:0005634 GO:GO:0009411 GO:GO:0008630 GO:GO:0006979
GO:GO:0000166 GO:GO:0003684 GO:GO:0009636 GO:GO:0006289
SUPFAM:SSF46955 KO:K10847 InterPro:IPR022656 PANTHER:PTHR10142
Pfam:PF05181 TIGRFAMs:TIGR00598 PROSITE:PS00752 PROSITE:PS00753
InterPro:IPR022652 Pfam:PF01286 GeneTree:ENSGT00390000002721
InterPro:IPR022658 OMA:GFFLEEE EMBL:CU915414 RefSeq:XP_003122073.1
UniGene:Ssc.25793 Ensembl:ENSSSCT00000005908 GeneID:100522779
KEGG:ssc:100522779 Uniprot:F1SSH0
Length = 273
Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 102/261 (39%), Positives = 149/261 (57%)
Query: 50 PNPVKAGVRQTASAPSSCPQSPNLRSTTRLGGARSPGTIRSIINAVGSKLFTDTGGGFLL 109
P V+A + + Q+ R R A + + N + DTGGGF+L
Sbjct: 21 PASVRANIERKRQRALMLRQA---RLAARPYPATTAAATGGVANVKAAPKIIDTGGGFIL 77
Query: 110 DYDDKYEE---KYIKQPAPLLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKH 166
+ + + E K + QP P++ E + C EC K+F S+L + F + CD+CRD + KH
Sbjct: 78 EEEVEEEHAIGKVVHQPGPVM-EFDYVICEECGKEFMDSYLMNHFDLATCDNCRDADDKH 136
Query: 167 CLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGS 226
L+T+T+AK EYLLKDCDL+KREP L+F+ KNPH+ WGDMKLYL LQ+ +R++EVWG+
Sbjct: 137 KLITKTEAKQEYLLKDCDLEKREPALKFIVKKNPHHSQWGDMKLYLKLQIVKRSLEVWGT 196
Query: 227 XXXXXXXXXXXXXKASNSKLKQYNKKIKALRMAVRSSLFNKISTSPSSHSHQFGMEVHNE 286
K K+++KK+K LR AVRSS++ + + + H H +G E N
Sbjct: 197 QEALEEAKAIRQKNREKMKQKKFDKKVKELRRAVRSSVWKRETVA---HQHVYGPE-ENL 252
Query: 287 EDDTYTRKCSTCDFEETFEKI 307
EDD Y + C+ C E T+EK+
Sbjct: 253 EDDMYRKTCTVCGHELTYEKM 273
>MGI|MGI:99135 [details] [associations]
symbol:Xpa "xeroderma pigmentosum, complementation group A"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IMP] [GO:0006289
"nucleotide-excision repair" evidence=IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0006979 "response to
oxidative stress" evidence=IMP] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IMP]
[GO:0009411 "response to UV" evidence=IMP] [GO:0009636 "response to
toxic substance" evidence=IMP] [GO:0019904 "protein domain specific
binding" evidence=ISO] [GO:0035264 "multicellular organism growth"
evidence=IGI] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000465 InterPro:IPR009061 MGI:MGI:99135 GO:GO:0005634
GO:GO:0009411 GO:GO:0008630 GO:GO:0006979 GO:GO:0000166
GO:GO:0046872 GO:GO:0003684 GO:GO:0009636 GO:GO:0035264
GO:GO:0006289 SUPFAM:SSF46955 EMBL:AL806523 eggNOG:COG5145
KO:K10847 InterPro:IPR022656 PANTHER:PTHR10142 Pfam:PF05181
TIGRFAMs:TIGR00598 PROSITE:PS00752 PROSITE:PS00753
InterPro:IPR022652 Pfam:PF01286 GeneTree:ENSGT00390000002721
InterPro:IPR022658 CTD:7507 HOVERGEN:HBG009053 HOGENOM:HOG000045820
OMA:GFFLEEE OrthoDB:EOG4G7C06 EMBL:X74345 EMBL:X74346 EMBL:X74347
EMBL:X74348 EMBL:X74349 EMBL:X74350 EMBL:X74351 EMBL:AK008962
IPI:IPI00132269 IPI:IPI00461145 PIR:S41498 RefSeq:NP_035858.2
UniGene:Mm.247036 ProteinModelPortal:Q64267 SMR:Q64267
STRING:Q64267 PhosphoSite:Q64267 PRIDE:Q64267
Ensembl:ENSMUST00000030013 Ensembl:ENSMUST00000142380 GeneID:22590
KEGG:mmu:22590 UCSC:uc008stm.2 UCSC:uc008stn.1 NextBio:302929
Bgee:Q64267 CleanEx:MM_XPA Genevestigator:Q64267
GermOnline:ENSMUSG00000028329 Uniprot:Q64267
Length = 272
Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 107/262 (40%), Positives = 151/262 (57%)
Query: 50 PNPVKAGVRQTASAPSSCPQSPNLRSTTRLGGARSPGTIRS--IINAVGSKLFTDTGGGF 107
P + A VR AS ++ LR RL P + + + + DT GGF
Sbjct: 19 PAQLPAAVR--ASVERKRQRALMLRQA-RLAARPYPAAAATGGVASVKAAPKMIDTKGGF 75
Query: 108 LLDYDDKYEE--KYIKQPAPLLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESK 165
+L+ +++ E + +P P++ E + C EC K+F S+L + F CDSCRD + K
Sbjct: 76 ILEEEEEKHEIGNIVHEPGPVM-EFDYTICEECGKEFMDSYLMNHFDLPTCDSCRDADDK 134
Query: 166 HCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWG 225
H L+T+T+AK EYLLKDCDL+KREP LRFL KNP + WGDMKLYL LQV +RA+EVWG
Sbjct: 135 HKLITKTEAKQEYLLKDCDLEKREPALRFLVKKNPRHSQWGDMKLYLKLQVVKRALEVWG 194
Query: 226 SXXXXXXXXXXXXXKASNSKLKQYNKKIKALRMAVRSSLFNKISTSPSSHSHQFGMEVHN 285
S K K+++KK+K LR A+RSS++ + +T+ H H++G E N
Sbjct: 195 SQEALEDAKEVRQENREKMKQKKFDKKVKELRRAIRSSVWKRETTT---HQHKYGPE-EN 250
Query: 286 EEDDTYTRKCSTCDFEETFEKI 307
EDD Y + C+ C E T+EK+
Sbjct: 251 LEDDMYRKTCTLCGHELTYEKM 272
>ZFIN|ZDB-GENE-040426-1205 [details] [associations]
symbol:xpa "xeroderma pigmentosum, complementation
group A" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000465
InterPro:IPR009061 ZFIN:ZDB-GENE-040426-1205 GO:GO:0005634
GO:GO:0000166 GO:GO:0003684 GO:GO:0006289 SUPFAM:SSF46955
eggNOG:COG5145 KO:K10847 InterPro:IPR022656 PANTHER:PTHR10142
Pfam:PF05181 TIGRFAMs:TIGR00598 PROSITE:PS00752 HSSP:P23025
InterPro:IPR022652 Pfam:PF01286 CTD:7507 OrthoDB:EOG4G7C06
EMBL:BC055179 IPI:IPI00497415 RefSeq:NP_956765.1 UniGene:Dr.82371
ProteinModelPortal:Q7SY02 SMR:Q7SY02 STRING:Q7SY02 PRIDE:Q7SY02
GeneID:393443 KEGG:dre:393443 InParanoid:Q7SY02 NextBio:20814480
ArrayExpress:Q7SY02 Bgee:Q7SY02 Uniprot:Q7SY02
Length = 549
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 100/223 (44%), Positives = 138/223 (61%)
Query: 82 ARSPGTIRSIINAVGSKLFTDTGGGFLLDY----DDKYEEKYIKQPAPLLLESEQPTCVE 137
+R + +A +K D+G GF ++ D++ E++ ++QPAP++ E + C E
Sbjct: 52 SRPSSAVEGATHAKVAKTI-DSGAGFFIEEETTEDEQQEKRVVQQPAPVM-EPDYLMCEE 109
Query: 138 CKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRA 197
C+K F S+L + F SVCD CRD E KH L++RT+AK YLLKDCDLDKREP LRF+
Sbjct: 110 CQKPFMDSYLSNSFDLSVCDKCRDNEVKHKLISRTEAKKNYLLKDCDLDKREPPLRFILR 169
Query: 198 KNPHNKHWGDMKLYLSLQVEQRAIEVWGSXXXXXXXXXXXXXKASNSKLKQYNKKIKALR 257
KNPHN WGDMKLYL QVE+R++EVWGS K K++NKK+K LR
Sbjct: 170 KNPHNPRWGDMKLYLKTQVEKRSMEVWGSDEALEEAKETREENKEVQKQKRFNKKVKELR 229
Query: 258 MAVRSSLFNKISTSPSSHSHQFGM-EVHNEEDDTYTRKCSTCD 299
VRSS+F K S H H +G E+ +EE+D+++ KC+ D
Sbjct: 230 RTVRSSMFKK---DTSIHQHDYGHDELLDEEEDSFSEKCNFRD 269
>WB|WBGene00006963 [details] [associations]
symbol:xpa-1 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040025 "vulval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0009411 "response to UV" evidence=IGI;IMP]
[GO:0006974 "response to DNA damage stimulus" evidence=IGI;IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0010225 "response to
UV-C" evidence=IMP] InterPro:IPR000465 InterPro:IPR009061
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0000166
GO:GO:0003684 GO:GO:0000003 GO:GO:0006974 GO:GO:0040025
GO:GO:0006289 GO:GO:0010225 SUPFAM:SSF46955 eggNOG:COG5145
KO:K10847 InterPro:IPR022656 PANTHER:PTHR10142 Pfam:PF05181
TIGRFAMs:TIGR00598 HSSP:P23025 InterPro:IPR022652 Pfam:PF01286
GeneTree:ENSGT00390000002721 HOGENOM:HOG000045820 EMBL:Z71264
PIR:T23428 RefSeq:NP_492025.1 UniGene:Cel.18482
ProteinModelPortal:Q21302 SMR:Q21302 IntAct:Q21302 STRING:Q21302
EnsemblMetazoa:K07G5.2 GeneID:187120 KEGG:cel:CELE_K07G5.2
CTD:187120 WormBase:K07G5.2 InParanoid:Q21302 OMA:HNPRYGD
NextBio:934162 Uniprot:Q21302
Length = 241
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 87/213 (40%), Positives = 125/213 (58%)
Query: 104 GGGFLLDYDDKYEEKY-----IKQP----APLLLESEQPTCVECKKKFPQSFLYDKFGHS 154
GGGF D DD+ +E+ ++Q A L+++ + C +C K S+L++++ +
Sbjct: 33 GGGFC-DDDDEVQERREQISEMRQKREEAAHNLIQAPE-NCEKCDKGLMDSWLWERYNCA 90
Query: 155 VCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSL 214
VCD+CRD + +H L+ RT+ KN YLLKDCDLD R+P LR+ KNPHN +GDMKLYL
Sbjct: 91 VCDACRDDKGEHKLLARTEVKNTYLLKDCDLDLRKPKLRYWAKKNPHNPRYGDMKLYLKC 150
Query: 215 QVEQRAIEVWGSXXXXXXXXXXXXXKASNSKLKQYNKKIKALRMAVRSSLFNKISTSPSS 274
Q+E R +EV GS K++ KK+K LR +R + K+
Sbjct: 151 QIETRVLEVHGSWEDLELKKELREQSKEVRSEKRFEKKLKDLRQQIRGTSGVKVDFG-RP 209
Query: 275 HSHQFGMEVHNEEDDTYTRKCSTCDFEETFEKI 307
H+H+FG E H EED T+ R C TC++EE FEK+
Sbjct: 210 HTHEFGKETHVEED-TWRRTCITCEYEEVFEKL 241
>UNIPROTKB|F2Z2T2 [details] [associations]
symbol:XPA "DNA repair protein-complementing XP-A cells"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR000465
InterPro:IPR009061 GO:GO:0005634 GO:GO:0000166 GO:GO:0003684
GO:GO:0006289 SUPFAM:SSF46955 EMBL:AL445531 InterPro:IPR022656
PANTHER:PTHR10142 Pfam:PF05181 TIGRFAMs:TIGR00598 PROSITE:PS00752
PROSITE:PS00753 InterPro:IPR022652 Pfam:PF01286 InterPro:IPR022658
HGNC:HGNC:12814 IPI:IPI00979716 ProteinModelPortal:F2Z2T2
SMR:F2Z2T2 Ensembl:ENST00000462523 ArrayExpress:F2Z2T2 Bgee:F2Z2T2
Uniprot:F2Z2T2
Length = 264
Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 81/208 (38%), Positives = 118/208 (56%)
Query: 50 PNPVKAGVRQTASAPSSCPQSPNLRSTTRLGGARSPGTIRSIINAVGSKLFTDTGGGFLL 109
P V+A + + Q+ R R A + + N + DTGGGF+L
Sbjct: 21 PASVRASIERKRQRALMLRQA---RLAARPYSATAAAATGGMANVKAAPKIIDTGGGFIL 77
Query: 110 DYDDKYEEKY---IKQPAPLLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKH 166
+ +++ E+K + QP P++ E + C EC K+F S+L + F CD+CRD + KH
Sbjct: 78 EEEEEEEQKIGKVVHQPGPVM-EFDYVICEECGKEFMDSYLMNHFDLPTCDNCRDADDKH 136
Query: 167 CLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGS 226
L+T+T+AK EYLLKDCDL+KREP L+F+ KNPH+ WGDMKLYL LQ+ +R++EVWGS
Sbjct: 137 KLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKLYLKLQIVKRSLEVWGS 196
Query: 227 XXXXXXXXXXXXXKASNSKLKQYNKKIK 254
K K+++KK+K
Sbjct: 197 QEALEEAKEVRQENREKMKQKKFDKKVK 224
>RGD|1308769 [details] [associations]
symbol:Xpa "xeroderma pigmentosum, complementation group A"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=ISO]
[GO:0006289 "nucleotide-excision repair" evidence=IEA;ISO]
[GO:0006979 "response to oxidative stress" evidence=IEA;ISO]
[GO:0008150 "biological_process" evidence=ND] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA;ISO] [GO:0009411 "response to UV" evidence=IEA;ISO]
[GO:0009636 "response to toxic substance" evidence=IEA;ISO]
[GO:0019904 "protein domain specific binding" evidence=IEA;ISO]
[GO:0035264 "multicellular organism growth" evidence=ISO]
[GO:0042803 "protein homodimerization activity" evidence=IEA;ISO]
InterPro:IPR000465 InterPro:IPR009061 RGD:1308769 GO:GO:0005634
GO:GO:0000166 GO:GO:0003684 EMBL:CH473962 GO:GO:0006289
SUPFAM:SSF46955 KO:K10847 InterPro:IPR022656 PANTHER:PTHR10142
Pfam:PF05181 TIGRFAMs:TIGR00598 PROSITE:PS00752 PROSITE:PS00753
InterPro:IPR022652 Pfam:PF01286 GeneTree:ENSGT00390000002721
InterPro:IPR022658 CTD:7507 OrthoDB:EOG4G7C06 IPI:IPI00950310
RefSeq:NP_001100126.1 UniGene:Rn.12469 Ensembl:ENSRNOT00000064685
GeneID:298074 KEGG:rno:298074 UCSC:RGD:1308769 NextBio:643106
Uniprot:D4A981
Length = 241
Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
Identities = 82/190 (43%), Positives = 116/190 (61%)
Query: 82 ARSPGTIRSIINAVGSKLFTDTGGGFLLDYDDKYEEKY---IKQPAPLLLESEQPTCVEC 138
A + G + SI A K+ DT GGF+L+ +++ + K + +P P++ E + C EC
Sbjct: 53 AAATGGVTSIKAA--PKVI-DTKGGFILEEEEEEKHKIGDVVHEPGPVM-EFDYTICEEC 108
Query: 139 KKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAK 198
K+F S+L + F CDSCRD + KH L+T+T+AK EYLLKDCDL+KREP LRF+ K
Sbjct: 109 GKEFMDSYLMNHFDLPTCDSCRDADDKHKLITKTEAKQEYLLKDCDLEKREPALRFIVKK 168
Query: 199 NPHNKHWGDMKLYLSLQVEQRAIEVWGSXXXXXXXXXXXXXKASNSKLKQYNKKIKA-LR 257
NP + WGDMKLYL LQV +RA+EVWGS K K+++KK+K
Sbjct: 169 NPRHSQWGDMKLYLKLQVVKRALEVWGSQEALEDAKEVRQENREKMKQKKFDKKVKVGFY 228
Query: 258 MAVRSSLFNK 267
A++ L++K
Sbjct: 229 DAMKILLYDK 238
>UNIPROTKB|F1NKG8 [details] [associations]
symbol:F1NKG8 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006979 "response to oxidative stress"
evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0009636 "response to toxic substance"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] InterPro:IPR000465 InterPro:IPR009061 GO:GO:0005634
GO:GO:0009411 GO:GO:0008630 GO:GO:0006979 GO:GO:0000166
GO:GO:0003684 GO:GO:0009636 GO:GO:0006289 SUPFAM:SSF46955
InterPro:IPR022656 PANTHER:PTHR10142 Pfam:PF05181 PROSITE:PS00753
GeneTree:ENSGT00390000002721 InterPro:IPR022658 IPI:IPI00591658
EMBL:AADN02016025 EMBL:AADN02060115 Ensembl:ENSGALT00000037558
OMA:HAHSGDM Uniprot:F1NKG8
Length = 65
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 46/63 (73%), Positives = 50/63 (79%)
Query: 159 CRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQ 218
CRD E KH L+TRT+AK EYLLKDCDLDKREPVLRF+ KNPHN WGDMKLYL LQV
Sbjct: 1 CRDAEDKHKLITRTEAKEEYLLKDCDLDKREPVLRFIVKKNPHNPRWGDMKLYLKLQVSS 60
Query: 219 RAI 221
+
Sbjct: 61 GTV 63
>POMBASE|SPBC649.03 [details] [associations]
symbol:rhp14 "XP-A family homolog Rhp14" species:4896
"Schizosaccharomyces pombe" [GO:0000109 "nucleotide-excision repair
complex" evidence=ISO] [GO:0000715 "nucleotide-excision repair, DNA
damage recognition" evidence=ISO] [GO:0003684 "damaged DNA binding"
evidence=ISO] [GO:0006289 "nucleotide-excision repair"
evidence=IGI] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0070914 "UV-damage excision repair" evidence=IMP] [GO:1901255
"nucleotide-excision repair involved in interstrand cross-link
repair" evidence=IMP] InterPro:IPR000465 InterPro:IPR009061
PomBase:SPBC649.03 GO:GO:0000166 GO:GO:0046872 GO:GO:0003684
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0070914
SUPFAM:SSF46955 GO:GO:0000715 GO:GO:0000109 GO:GO:1901255
eggNOG:COG5145 KO:K10847 InterPro:IPR022656 PANTHER:PTHR10142
Pfam:PF05181 TIGRFAMs:TIGR00598 PROSITE:PS00752 PROSITE:PS00753
PIR:T40596 RefSeq:NP_595222.1 HSSP:P23025 ProteinModelPortal:O59753
STRING:O59753 EnsemblFungi:SPBC649.03.1 GeneID:2541120
KEGG:spo:SPBC649.03 HOGENOM:HOG000161510 OMA:ECDSIEL
OrthoDB:EOG44N22D NextBio:20802233 InterPro:IPR022652 Pfam:PF01286
Uniprot:O59753
Length = 289
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 69/224 (30%), Positives = 108/224 (48%)
Query: 97 SKLFTDTGGGFLL------DYDDKYEEKYIKQP---------APLLLESEQ-PTCVECKK 140
SK+ DT GG+LL D +K E+ +++ APL L+ E P C EC
Sbjct: 63 SKI-EDTKGGYLLEEKKVEDLREKPAERELREQEERQKKLRLAPLNLDPETAPKCFECDS 121
Query: 141 KFPQSFLYDKFGHSVCDSCRDG-ESKHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKN 199
+ +D F VC +CR+ K+ L+T+T+ K +YLL + +L +E + R L+A N
Sbjct: 122 IELDTKYFDIFHCRVCHTCREKYPDKYSLLTKTECKLDYLLTEPELQDQELLPRLLKA-N 180
Query: 200 PHNKHWGDMKLYLSLQVEQRAIEVWGSXXXXXXXXXXXXXKASNSKLKQYNKKIKALRMA 259
PH + W +M LYL QVE+ A + WGS + K K++ K++ LR
Sbjct: 181 PHQQGWSNMMLYLRYQVEEFAKKKWGSMEALDAEFERREVQKKEMKEKKFEKQLLELRKR 240
Query: 260 VRSSLFNKISTSPS-SHSHQFGMEVHN-EEDDTYTRKCSTCDFE 301
R+S ++++S H H + E E ++C C E
Sbjct: 241 TRTSNYSRMSIREKRKHVHSYDEEFEKPNEPGVIVQRCK-CGLE 283
>SGD|S000004814 [details] [associations]
symbol:RAD14 "Protein that recognizes and binds damaged DNA
during NER" species:4932 "Saccharomyces cerevisiae" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003684 "damaged DNA binding"
evidence=IEA;IDA;TAS] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0000110 "nucleotide-excision repair factor 1
complex" evidence=TAS;IPI] [GO:0000715 "nucleotide-excision repair,
DNA damage recognition" evidence=IDA;TAS] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IDA]
InterPro:IPR000465 InterPro:IPR009061 SGD:S000004814 GO:GO:0000166
GO:GO:0046872 GO:GO:0003684 GO:GO:0008270 EMBL:BK006946
SUPFAM:SSF46955 GO:GO:0000715 GO:GO:0000110 EMBL:Z48755
eggNOG:COG5145 KO:K10847 InterPro:IPR022656 PANTHER:PTHR10142
Pfam:PF05181 TIGRFAMs:TIGR00598 PROSITE:PS00752 PROSITE:PS00753
HOGENOM:HOG000161510 OrthoDB:EOG44N22D InterPro:IPR022652
EMBL:X64064 PIR:S59442 RefSeq:NP_013928.1 ProteinModelPortal:P28519
SMR:P28519 DIP:DIP-1896N IntAct:P28519 MINT:MINT-406437
STRING:P28519 PaxDb:P28519 PeptideAtlas:P28519 EnsemblFungi:YMR201C
GeneID:855241 KEGG:sce:YMR201C CYGD:YMR201c
GeneTree:ENSGT00390000002721 OMA:ECKEDYF NextBio:978795
Genevestigator:P28519 GermOnline:YMR201C InterPro:IPR022658
Uniprot:P28519
Length = 371
Score = 206 (77.6 bits), Expect = 3.0e-16, P = 3.0e-16
Identities = 55/199 (27%), Positives = 94/199 (47%)
Query: 113 DKYEEKYIKQPAPLLLE-SEQPTCVECKKKFPQS-FLYDKFGHSVCDSC-RDGESKHCLV 169
++ E K + + AP S+ P C+EC L+D F VC C ++ K+ L+
Sbjct: 168 EQLERKMLYENAPPPEHISKAPKCIECHINIEMDPVLHDVFKLQVCKQCSKEHPEKYALL 227
Query: 170 TRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSXXX 229
T+T+ K +Y L D +L+ E + L NPH+ + M+L++ +VE A + WG
Sbjct: 228 TKTECKEDYFLTDPELND-EDLFHRLEKPNPHSGTFARMQLFVRCEVEAFAFKKWGGEEG 286
Query: 230 XXXXXXXXXXKASNSKLKQYNKKIKALRMAVRSSLF-NKISTSP--SSHSHQFGMEVHNE 286
++ + K+Y KKIK +R+ R+ + N++ +H H F V
Sbjct: 287 LDEEWQRREEGKAHRREKKYEKKIKEMRLKTRAQEYTNRLREKKHGKAHIHHFSDPVDGG 346
Query: 287 -EDDTYT---RKCSTCDFE 301
++D Y R+C+ C E
Sbjct: 347 IDEDGYQIQRRRCTDCGLE 365
>CGD|CAL0003083 [details] [associations]
symbol:RAD14 species:5476 "Candida albicans" [GO:0000110
"nucleotide-excision repair factor 1 complex" evidence=IEA]
[GO:0000715 "nucleotide-excision repair, DNA damage recognition"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000465
InterPro:IPR009061 CGD:CAL0003083 GO:GO:0005634 GO:GO:0000166
GO:GO:0046872 GO:GO:0003684 EMBL:AP006852 EMBL:AACQ01000020
EMBL:AACQ01000016 GO:GO:0006289 SUPFAM:SSF46955 EMBL:X81025
RefSeq:XP_720842.1 RefSeq:XP_721355.1 RefSeq:XP_888822.1
ProteinModelPortal:P53709 STRING:P53709 GeneID:3636953
GeneID:3637509 GeneID:3704127 KEGG:cal:CaO19.13870
KEGG:cal:CaO19.6517 KEGG:cal:CaO19_6517 eggNOG:COG5145 KO:K10847
InterPro:IPR022656 PANTHER:PTHR10142 Pfam:PF05181
TIGRFAMs:TIGR00598 PROSITE:PS00752 PROSITE:PS00753 Uniprot:P53709
Length = 396
Score = 167 (63.8 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 53/201 (26%), Positives = 88/201 (43%)
Query: 108 LLDYDDKYEE--KYIKQPAPLLLESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDG-ES 164
L D+ +K E K + P P+ L++ P C EC+ + L F C C
Sbjct: 195 LQDWKNKQRELQKIRELPPPIDLQNI-PRCRECQSMEVDANLMTNFNVRACRKCIKALPE 253
Query: 165 KHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVW 224
K+ L+T+T+ K +YLL + +L + R + NPH + M+L++ QVE+ A + W
Sbjct: 254 KYSLLTKTECKEDYLLTEPELQDTTLLPR-IEKPNPHG--YSRMQLFVRFQVEEFAWKKW 310
Query: 225 GSXXXXXXXXXXXXXKASNSKLKQYNKKIKALRMAVRSSLFN-KISTSPS---SHSHQFG 280
G K K+Y+ +++ +R R+ + K+ S H H +
Sbjct: 311 GGPEELDKEWERREENKVKRKEKKYHDQLREMRKRTRAEEYTRKLRDGKSLGERHVHDWS 370
Query: 281 MEVHNEEDDTYTRKCSTCDFE 301
V N + T R+C C E
Sbjct: 371 SPV-NIDKHTIKRRCIDCGIE 390
Score = 49 (22.3 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 64 PSSCPQSPNLRSTTRLGGARSPG-TIRSIINA 94
PSS P+S + +TT+ G+ SP T+ I+N+
Sbjct: 41 PSSTPKSTST-TTTKETGSYSPTKTLSQIVNS 71
>GENEDB_PFALCIPARUM|MAL7P1.32 [details] [associations]
symbol:MAL7P1.32 "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=RCA] InterPro:IPR000465 InterPro:IPR009061
GO:GO:0005634 GO:GO:0000166 GO:GO:0003684 GO:GO:0006289
EMBL:AL844506 SUPFAM:SSF46955 KO:K10847 PANTHER:PTHR10142
RefSeq:XP_001349017.1 ProteinModelPortal:Q8IBY6
EnsemblProtists:MAL7P1.32:mRNA GeneID:2655205 KEGG:pfa:MAL7P1.32
EuPathDB:PlasmoDB:PF3D7_0710400 ProtClustDB:CLSZ2500633
Uniprot:Q8IBY6
Length = 396
Score = 134 (52.2 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 42/176 (23%), Positives = 74/176 (42%)
Query: 135 CVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRF 194
C + KK + ++ ++ +C C+ ++ +++ T +Y L DL K E L
Sbjct: 217 CNKKKKNYNETLVHINI--YLCKECKALDNNFRMISLTKLIKKYSLNTYDLSKYEKQLAL 274
Query: 195 LRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSXXXXXXXXXXXX----XKASNSKLKQYN 250
L KNP + MKLY Q+++ A+ GS +S +K+ + +
Sbjct: 275 LSTKNPRG-YMKQMKLYFIFQIKEIALRKHGSLLTVKNLYNNKLLNINSSSSTNKINKTS 333
Query: 251 K---KIKALRMAVRSSLFN--KISTSPSSHSHQFGMEVH-NEEDDTYTRKCSTCDF 300
K K K + + N K+ + H F V N+ D+TY +KC C +
Sbjct: 334 KLIHKFKKTKTIYSKDVRNMEKLKIICEDNEHDFDTPVCINQNDNTYNKKCKKCSY 389
Score = 39 (18.8 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 10/17 (58%), Positives = 10/17 (58%)
Query: 105 GGFLLDYD-DKYEEKYI 120
GGFLLD D D YI
Sbjct: 131 GGFLLDNDEDDNNNLYI 147
>UNIPROTKB|Q8IBY6 [details] [associations]
symbol:MAL7P1.32 "Nucleotide excision repair protein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0020011
"apicoplast" evidence=RCA] InterPro:IPR000465 InterPro:IPR009061
GO:GO:0005634 GO:GO:0000166 GO:GO:0003684 GO:GO:0006289
EMBL:AL844506 SUPFAM:SSF46955 KO:K10847 PANTHER:PTHR10142
RefSeq:XP_001349017.1 ProteinModelPortal:Q8IBY6
EnsemblProtists:MAL7P1.32:mRNA GeneID:2655205 KEGG:pfa:MAL7P1.32
EuPathDB:PlasmoDB:PF3D7_0710400 ProtClustDB:CLSZ2500633
Uniprot:Q8IBY6
Length = 396
Score = 134 (52.2 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 42/176 (23%), Positives = 74/176 (42%)
Query: 135 CVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKNEYLLKDCDLDKREPVLRF 194
C + KK + ++ ++ +C C+ ++ +++ T +Y L DL K E L
Sbjct: 217 CNKKKKNYNETLVHINI--YLCKECKALDNNFRMISLTKLIKKYSLNTYDLSKYEKQLAL 274
Query: 195 LRAKNPHNKHWGDMKLYLSLQVEQRAIEVWGSXXXXXXXXXXXX----XKASNSKLKQYN 250
L KNP + MKLY Q+++ A+ GS +S +K+ + +
Sbjct: 275 LSTKNPRG-YMKQMKLYFIFQIKEIALRKHGSLLTVKNLYNNKLLNINSSSSTNKINKTS 333
Query: 251 K---KIKALRMAVRSSLFN--KISTSPSSHSHQFGMEVH-NEEDDTYTRKCSTCDF 300
K K K + + N K+ + H F V N+ D+TY +KC C +
Sbjct: 334 KLIHKFKKTKTIYSKDVRNMEKLKIICEDNEHDFDTPVCINQNDNTYNKKCKKCSY 389
Score = 39 (18.8 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 10/17 (58%), Positives = 10/17 (58%)
Query: 105 GGFLLDYD-DKYEEKYI 120
GGFLLD D D YI
Sbjct: 131 GGFLLDNDEDDNNNLYI 147
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.390 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 313 281 0.00083 115 3 11 22 0.40 34
33 0.42 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 604 (64 KB)
Total size of DFA: 216 KB (2120 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:03
No. of threads or processors used: 24
Search cpu time: 24.81u 0.08s 24.89t Elapsed: 00:00:14
Total cpu time: 24.81u 0.08s 24.89t Elapsed: 00:00:17
Start: Thu Aug 15 12:50:56 2013 End: Thu Aug 15 12:51:13 2013