RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5133
(313 letters)
>d1d4ua1 a.6.1.2 (A:37-111) DNA repair factor XPA DNA- and
RPA-binding domain, C-terminal subdomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 75
Score = 119 bits (299), Expect = 9e-35
Identities = 47/73 (64%), Positives = 61/73 (83%)
Query: 165 KHCLVTRTDAKNEYLLKDCDLDKREPVLRFLRAKNPHNKHWGDMKLYLSLQVEQRAIEVW 224
KH L+T+T+AK EYLLKDCDL+KREP L+F+ KNPH+ WGDMKLYL LQ+ +R++EVW
Sbjct: 2 KHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKLYLKLQIVKRSLEVW 61
Query: 225 GSEEELEQERERR 237
GS+E LE+ +E R
Sbjct: 62 GSQEALEEAKEVR 74
>d1d4ua2 g.39.1.5 (A:1-36) DNA repair factor XPA DNA- and
RPA-binding domain, N-terminal subdomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 36
Score = 47.9 bits (114), Expect = 1e-08
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 128 LESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGE 163
+E + C EC K+F S+L D F CD CRD +
Sbjct: 1 MEFDYVICEECGKEFMDSYLMDHFDLPTCDDCRDAD 36
>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus
agalactiae [TaxId: 1311]}
Length = 269
Score = 28.8 bits (64), Expect = 0.82
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 174 AKNEYLLKDCDLDKREPVLRFLR 196
E L++ + +E +L
Sbjct: 28 IWTEVFLREINRSNQEIILHIWP 50
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein
Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 25.7 bits (56), Expect = 1.4
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 7/32 (21%)
Query: 133 PTCVECKKKFPQSFLYDK-----FGHSVCDSC 159
P+C C F + K + C +C
Sbjct: 1 PSCKSCGAHF--ANTARKQTCLDCKKNFCMTC 30
>d1wdka1 a.100.1.3 (A:497-620) Fatty oxidation complex alpha
subunit, C-terminal domain {Pseudomonas fragi [TaxId:
296]}
Length = 124
Score = 27.1 bits (59), Expect = 1.6
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 103 TGGGFLLDYDDKYEEKYIKQPAPLLLESEQPTCVECK 139
G GF Y+ + K K +LE +P E +
Sbjct: 89 NGKGFY-AYEADKKGKQKKLVDSSVLEVLKPIVYEQR 124
>d2a21a1 c.1.10.4 (A:1002-1264) 3-deoxy-D-manno-octulosonate
8-phosphate synthase (KDO8P synthase) {Aquifex aeolicus
[TaxId: 63363]}
Length = 263
Score = 27.1 bits (59), Expect = 3.0
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Query: 245 KLKQYNKKIKALRMAVRSSLFNKISTSPSSHSHQ--FGMEVHNEEDDTYTRKCSTCDF 300
++K+ ++K K + +SS +S S + T D
Sbjct: 24 EIKRLSEKFKEVEFVFKSSFDKANRSSIHSFRGHGLEYGVKALRKVKEEFGLKITTDI 81
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus
halodurans [TaxId: 86665]}
Length = 265
Score = 26.6 bits (58), Expect = 3.8
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 174 AKNEYLLKDCDLDKREPVLRFLRAKN 199
A ++ L + P LR N
Sbjct: 21 AYDDTLCTSIGKSQSPPTLRAWVHHN 46
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 64
Score = 24.3 bits (52), Expect = 5.1
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 129 ESEQPTCVECKKKFP---QSFLYDKFGHSVCDSC 159
++E C+ C K F + + G+ C C
Sbjct: 5 DNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAEC 38
>d1mr1c_ d.217.1.2 (C:) SMAD4-binding domain of oncoprotein Ski
{Human (Homo sapiens) [TaxId: 9606]}
Length = 97
Score = 24.8 bits (54), Expect = 6.3
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 22/91 (24%)
Query: 125 PLLLESEQPTCV---ECKKKF-PQSFLYDKFGHSVCDSCRDGESKHCLVTRTDAKN--EY 178
P L S C+ +C+ + P F V S + E++ C D+ N Y
Sbjct: 19 PELYSSPSAACIQCLDCRLMYPPHKF--------VVHSHKALENRTCHW-GFDSANWRAY 69
Query: 179 LLKDCDLDKREPVLRFLRAKNPHNKHWGDMK 209
+L D +E R R D+K
Sbjct: 70 ILLSQDYTGKEEQARLGRC-------LDDVK 93
>d1g47a2 g.39.1.3 (A:36-70) Pinch (particularly interesting new
Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 23.5 bits (51), Expect = 6.3
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 134 TCVECKKKFPQSFLYDKFGHSVCDSC 159
C +C ++FP+ Y+ G C+
Sbjct: 2 VCAQCFQQFPEGLFYEFEGRKYCEHD 27
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 23.7 bits (51), Expect = 6.9
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 129 ESEQPTCVECKKKFPQSFLYDKFGHSVCDSCRDGESKHCLVTRTD 173
E + C +C+ + L H++C C + C + +
Sbjct: 3 EFQFLRCQQCQAEAKCPKLL-PCLHTLCSGCLEASGMQCPICQAP 46
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 72
Score = 23.9 bits (51), Expect = 8.9
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 7/35 (20%)
Query: 130 SEQPTCVECKKKFPQSFLYDK-----FGHSVCDSC 159
++ C C+ +F +F K G C C
Sbjct: 11 ADGRVCHRCRVEF--TFTNRKHHCRNCGQVFCGQC 43
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 67
Score = 23.8 bits (51), Expect = 9.0
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 7/34 (20%)
Query: 131 EQPTCVECKKKFPQSFLYDK-----FGHSVCDSC 159
+ C+ C KKF S L K G C
Sbjct: 4 DSDACMICSKKF--SLLNRKHHCRSCGGVFCQEH 35
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.130 0.380
Gapped
Lambda K H
0.267 0.0584 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,127,788
Number of extensions: 52383
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 19
Length of query: 313
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 228
Effective length of database: 1,240,546
Effective search space: 282844488
Effective search space used: 282844488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.5 bits)